lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 1 1111 11 11 22222 11111111 1 2222 1 111111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 111111111111111111 1 1 2 3 11 1
lowQualScore : 22222222 0 444 2 2 4444 00 6 44 5 777777 00000 2 2 33 33 2 888888 66666666 44 44 3 3 7777 3 7777 6 5 5 222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 3 66 6 77 2 2 5555 2 666 666666666666666666 3 4 3 2 55555 2 5 2 55555 44 33 99 2 5555 7
lowQualScore : ........ . ... . . .... .. . .. . ...... ..... . . .. .. . ...... ........ .. .. . . .... . .... . . . ......... ..................................................................................................... . . .. . .. . . .... . ... .................. . . . . ..... . . . ..... .. .. .. . .... .
lowQualScore : 66666666 8 111 4 4 7777 33 3 66 0 222222 44444 5 5 44 22 4 222222 77777777 66 66 5 3 1111 3 2222 2 5 0 333333333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 5 99 0 55 4 4 0000 2 111 444444444444444444 8 9 5 6 99999 4 3 4 99999 88 77 00 3 7777 7
consensus : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT-T-TTTC----GCGC--CATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATAATTT------CT----TAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAATC--ATGA-T----TT-TTTT-ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AGG---------------T-----------------TTGG---------GGNAAACCT--TATTNT---------------TA--AACTTCCTNATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCACAAA-TAA----GTTTT-CTGAATGA---AT------------------ATGAAAGTGGTGAAAGTAGCATTCTATTT-TATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-TAAGTGTGATTTTG--T--CAA----AAAAAAACAGGGTCGG
Reference ( gi|6 ) : AAATGAGGGAGATTGGATGCAAATGC-------GGGATA---TTTT-T-TTTT----GCGC--CATAAAATTTAAAAATT-TTGTCATTTCGGTACAGTTTTACATAATTT------CA----TAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAATC--ATCA-T----TT-TTTA-AGTAAAA-TTTCTGTTTCTTCATTACAGCATATA---------AAAGTT---------------AGG---------------T-----------------TTGG---------GGTAAACCT--TTTTTT---------------TA--AACTTCCTAACAAGTCTGAATC-TTAACTTTATTCATCACAACAACTGTTCT-AATACCACAAA-TAA----GTTTT-CTGAATGA---AT------------------ATGAAAGTTGTAAAAGTAGCATTATATTTCTATTTT-----GTTTG-T-AAAATTC-AAC-----CATG-AAAGTGTGATTTTG--T--CAA----AATAAAACAGGGTCGG
gi|4 : AAATGACGGAGATTGGATGCAAATTA-------GGGAGA---TTTT-T-TTTTTC--GCAC--CATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATAACTT------CT----TAATAATTCA-A-GTATATTAAACCATATAAGATTGTGTTTTGTCATA--ATATATA--G-AGAATTT------AAATTAATAATAAGAGTAAT------ATA--TAGAATC--ATGA-T----TT-ATTT-ATTAAAA-TTTTCGTTTCTTCATTAAAACATATA---------AAAGTT---------------AGG---------------G-----------------GTGGTGGGGGGGAGGTAAATCT--TTTGTTAAAACCTGGCATTCCTAATAACTTCCTAATAAGTCGGAATC-CTAATTTTATTCATCACAACTAC---TCT-AATACCACAAA-TAA----GTTTT-C----TGA---AT------------------ATGAATGTGGTGAAGGTACCATTCTATTT-TATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-TAGGTGTGATTTTG--A--GAA----AA
gi|3 : gttttgAAATGAGGGAGATTATATGCAAATGA-------GGGAGA---TTTT-T-TTTT----TCGCAACATTAAATTTGAAAATA-TTGTCATTTCTGTACAATTCTCCATAATTT------CT----TAATAATTCA-A-GCATA--AAACCATAAAAGATGTTTTTTTGTCATA--ATATACA--G-AGAATAT------AAATCAATAACAAGAGTA--------ATA--TAGAATC--ATGA-T----TTATTTT-ATTAAAAATTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTGGG------------AGGGGGNNNNNNNNNNNNN-----------------NNNN---------NNNNNNNNN--NNNNNN---------------NN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTTGTCACAACAACTACTCT-AATACCACAAA-CAA----GTTTT-CTGAATGAATTAT------------------ATGAAAGTGGTTAAAGGAGCATTCTATTT-TATTTT-----GTTTG-TAAAAATCC-AAC-----CATG-TGAGTGTGATTTTG--T--CCA----CAAAAAAa
gi|8 : gttttgAAATGAGTGAGATTGGATGCAAATGA-------GGAAGA---TATT-T-TTTC----GCGC--CATAAAATTTTAAAATA-TTGTCATTTCGGTACAATTTTACATAATTT------CT----TAATAATTCA-A-GTATATTAAACAATAAAAGATGGTGTTTTGTCATA--ATATATA--T-TGAATAA------AAATTAATAACAAGAGTA--------ATA--TAGAATC--ATGA-T----TT-TTTT-ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATANNNNNNNNNNNNNNN---------------NNN---------------N-----------------NNNN---------NNNNNNNNN--NNNNNN---------------NN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTCACCACAACAACTA--CT-TATACCACACA-TAA----GTTTT-CTGAATGA---AT------------------ATGAATGAAGTGAAAGTAGCATTTTATTTa
gi|12 : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT-T-TTTC----GCGC--CATAAAATTTGAAAATA-TTGTCATTTCGCCACAATTTTACATAATTT------CT----TAATAATTCA-A-GTATATTAATCTATAAAAGATGGTG-TTTGTCATAATATATATA--T-AGAATATAAATTAAAATTAATAACAAGAGTA--------ATA--TAGAATC--ATGA-T----TT-TTTT-ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AA
gi|1 : ttttgAAATGAGGGTGATTGGATGCAAATAA-------GGGATT---TTTT-T-TTTTTTTCGCAC--CATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATAATTT------CT----TAATAATTCT-A-GTATATTAAACTACAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAAT---AAGAGTAATACATATATA--TAGAATC--ATAA-T----TT-TTTA-ATTAAAA-T-----TTTCGTCATTAAAGC--ATA---------ACAGTTGGGAAG---------AGG---------------T-----------------TGGG---------GG
gi|2 : ggttttgAAATGAGGGAGATTGGATGCAAATGA-------GGGATA---TTTT-T-TTTTTTC-GTGC--CATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATAATTT------CT----TAAAAATTAA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATT--ATATATA--G-AGAATTT------AATTTAATAACATGAGT----------T-------ATC--ATGATT----TT-TTTT-ATTGAAA-TTTTCGTTTCTTCATTAAAGCATATT---------AAAGTgggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaattttattcatcacaacaactactcttaatatcacaaataagttttctgcatgaatatgaaattggtgaaagtagcattctgttttgtttgtaaaaattcaaccacgtaagtgtgattttgccccaaaaaaaac
gi|17 : gttctgAAATGAGGGGGATTGGATGGAAATGA-------GGGATA---TTTT-T-TTTTC---GCGG--CATAAAGTTTGAAAATA-TTGTCATTTCGGTACAATTTTACATAATTT------CT----TAATAATACA-A-GTATATTAAACAATAACAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAaannnnnnnnnnnnnnnnnnnnnnnnngggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaatgaatatgaaagtggtgaaagtagcattctattttattttgtttgtaaaaattcaaccatgtaagtgtgattttgtccaaaa
gi|20 : gttttgAAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT-T-TTTT-----CGCAGCATAAAAT------ATT---GTCGTTTCGGTACAATTTTACATAATTT------CT----TAATAATTCA-A-GTATATTAAACCATAAAATATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAA
gi|18 : ggttttgAAATGAGGGAGATTGGATGAAAATGA-------GGAAGA---TTTT-T-TTAC----GTGG--CATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATAATTT------CT----TAATAATACA-A-GTATATTAAACCATAACAGATGATGTTTTGTCATA--ATATATA--G-AGAATAT------
gi|19 : tttaAAATGAGGGGGATTGGATGAAAATGA-------GGGAGA---TTTT-T-TT-------CGCTGCATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATTATTT------CT----TAATAATACA-A-GTATATTAAACCATAACAGATGGTTTTTTGTCATA--ATATATA--G-AGAATA
gi|23 : ttttgAAATGAGGGAGATTGGATGGAAATGA-------GAG------TTTT-T-TTTC----GCGG--CATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTATATAATTT------CT----TAATAATACA-A-GTATATTAAACCATAACAGATGGTGTTCTGTCATA--ATATATC--G-AGA
gi|16 : AAATGAGGGAGATTGGATGCAAATGATGGTTGAGGGAGA---TTTT-T-TTTC----ACGC--TATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATATTTTTTAATACATTTTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCAT
gi|15 : gttttgAAATGAGGGAGATCGGATGCAAATGA-------GGGAGA---TTTTTT-TTTT----GCCC--TATACGATTTGAAAACA-GTGTCATTTCGGTACAATTTTACATAATTT------CT----TAA
gi|31 : atgttagaattgattgatatgtgtaattaatatacatgtgaacctttttggaaagcactgagggagattgggttttgAAATGAGAAATAATAAATACAAATGA-------GAGAGA---TTTT-T-TTCT----GCagcctcattaaac
gi|5 : tgaaattggcttttcAATGAGGGAGATTGGATGCAAATGA-------GAGAGA---TTTT-T-TTTC----GCAC--AATAAAA-TTAGAAATTGCTGCTATTTCGGTATAAATTAAAGTAA-TT------CT----TGATAATTCA-A-GTATATAAAACTGTAAAAGAAGGTGTTTTACCATA--ATAGATAATG-AAAAAAT------AAATGAATAACAAAAGTA--------AAA--TAGTATCGGGTTA-A----TT-TT----ATTAAA-TTTTTATTTCTTC-------CAAAAA---------AAAATT---------------------------------T-----------------TTTT---------TTCAAACAT--TATT----------------------ACTTTCTTATAAATCTGAATCATTAATTTAATTAATCACCACAACCATTCT-AATAGCACAAA-TA------TTTTATTGAATGA---ATATTTAAAATGAAATGAAAATGAAAGTGGCGAAAGTAAAATTTTATTT-TATTTCGTGTGGTTTG-T-AAAAATCTAACTACTGTATG-AAAGTGTGATTTTG--T--CCA----AATAAAACAatgaatattgtt
gi|7 : aacgcAAATGA-------GGGAGAGATTTTT-T-TTTT----GCGC--CATAAAATTTGAAAATA-TTGTCATTTCGGTACAATTTTACATAATTT------CT----TAACAATTCA-A-GTATATTGAACCATAAAAGATGGTGTTTT-TCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAG-----------TA--TAGAATA--ATGA-T----TT-TTTT-ATTAAAA-TTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTTGGGGGTGG------AGG---------------TNNNNNNN----------NNNN---------NNNNNNNNN--NNNNNN---------------NN--NNNNNNNNNNNNNNNNNNNNTT-CTAATTTTATTCATCCCAACAACTACTCC-AATACCACAAA-TAA----GTTTT-CTGAATGA---AT------------------ATGAAAGTGATGAAAGTAGCAGTGTATTTTCATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-TAAGTGTGATTTTG--T--CCA----AAAAAAAGAG
gi|21 : ttttgAAATGA-------GGGAGA---TTTT-TTTTTC----GCGT--GATAAAATTAGAAATTT-TTGCTATTTCAGTATAGATTAAAGTAATTT------CT----TGACAATTCATACATATATTAAACAATAAAAGAATGTGTTTTATCATA--ACAGATA--GAAAAAAAT------AAATGAATAACAAAAG
gi|9 : ----TAATAATTAA-A-GTATATTAAACCAAAAAATATGGTGTTT-GTCATA--ATATATA--G--GAATAT------TAATTAATAACAAGAGCA--------ATAAATAGAA----ATTA-TATTTTT-TTTT-ATTAAAAATTTTCGATTCTTCATTAAAGCATATA---------AAAGTT---------------AGT---------------G-----------------TTA-------------AAACCTAGCATTCC---------------TAATAACTTCCTTATAAGTCTGAATC-CTAATTTTATTCGCCACAACAACTACTCT-TATACCAAAAA-TAA----GTTTT-CTGAATGA---AT------------------ATGAAAGTGGTGAAAGTAGCATTCTAATT-TATTTT-----GTTTC-TAAAAATTC-AAC-----CATG-TAAGTGTGAT
gi|29 : agtttaatgagccttATG--ACATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAATC--ATGA-T----TT-TTTT-ATTAAAA-TTTTCATTACTTCATTAAAACAAATA---------AAAG-A---------------AAG---------------T-----------------TTGA---------GG
gi|10 : A--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAATC--ATGG-T----TT-TTCA--TTAAAA-TTTTTGTTCCTTCATTAAAGCGTATA---------AAAATTCNNNNNNNNNNNNNNNNN---------------N-----------------NNNN---------NNNNNNNNN--NNNNNN---------------NN--NNNNNNNNNNNNNNNNNNNNTC-TTAATTTTATTCATCACAGCACCTACTCT-TATACCACAAA-CAA----GTTTT-CTGAATGA---AG------------------ATGGAGGTTGCAAAAGAAGCATTCTATTT-TATTTT-----GTTTG-TAAAAATCC-AAC-----CATG-TAAGTGTGATTTTG--TC-CAA----AAACAAACAGGGACGGgggggtgggggggtggg
gi|11 : ATTAATAACAAGAGTA--------ATA--TAGAATC--ATGA-T----TT-TTTTTATTAAAA-TTTCTGTTTCTTCATTAAACCATATA---------AAAGTT---------------GG-----------------------------------TGG---------GGGAGGG-------TAT---------------TA-----TTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAAGTACT---CT-AATACCACAAAACAATCACGTTTT-CTGAATGA---AT------------------ATGAAAGTGGTGAAAGTAGCATTCTATTT-TATTTT-----GTTTG-TAAAAATTC-AAC-----CATGTAAAGTGTGATTTTG--T--CAACAACAAAAAAACAGGtggg
gi|13 : AAA-TGTTTGTTTTTTCATTAAAGCATATA---------AAAGTT---------------GGG---------------TGGNNNNNNNNNNNNNNNNNNN---------NNNNNNNNN--NNNNNN---------------NN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTCTATTCATC-CAACAACTACCTT-AATACCATAAA-TAA----GTTTT-CAGAATGA---AT------------------ATGAAAGTGATGAAAGTAGCAGTCTATTTTTATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-TAAGTGTGA-TTTG--T--CAT----AGAAAAA
gi|14 : ACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTATTCT-AATACCACAAA-TAA----GTTTT-CTGAATGA---AT------------------ATGAAAGTGGTGAAAGTAGCATTTTATTTATATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-TAAGTATGATTTTG--T--T-A----AACAAAACAGGGTC
gi|1 : tttttatttaatcctagcagtcttTC-CTAATTTTATTCATCACAACAACTACTCTTAATATCACAAA-TAA----GTTTT-CTGCATGA---AT------------------ATGAAATTGGTGAAAGTAGCA------TTCTGTTTT-----GTTTG-TAAAAATTC-AAC-----CACG-TAAGTGTGATTTTGCCC--CAA----AA-AAAAC
gi|22 : ggttttgaaatgagggtgattggatgcaaataagggattttttttttttttcgcaccataaaatttgaaaatattgtcatttcggtacaattttacataatttcttaataattctagtatattaaactacaaaagatggtgttttgtcataatatatagagaatataaattaataagagtaatacatatatatagaatcataattttttaattaaaattttcgtcattaaagcataacagttgggaagaggttggggggggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAATTTTATTCATCACAACAACTACTCT-AATACCACAAA-TAA----GTTTT-CTGAATGA---AT------------------ATGAAAGTGGTGAAAGTTGCATTATATTTTTATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-AAAGTGTGATTTTG--T--TAA----AA-AAAACAGGATCGG
gi|28 : cTAATTTTATTCATCTCAACAACTACTCT-AATACCACAAA-TAA----GTTTT-CTGAATGA---AT------------------ATAAAAGTGATGAAAGTAGCAGTCTTTTTTTATTTT-----GTTTG-TAAAAATTC-AAT-----CATG-TAAGAGTGATTTtgggt
gi|27 : cTAATTTTATTCATCACAACAACTACTCT-AATATCACAAA-TAA----GTTTT-CTGAATG-----------------------------AGTGGAAAAAGTAGCTTTCTATCT-TATTTT-----GTTTGTT-AAAATTC-AAC-----CACG-TAAGTGTGATTTTG--TC-CAA----AAAAAACCAGGg
gi|25 : cTAATTGTATTCATCCCAACAACT------------ACAA--TAG----GTTTT-CTGAAGGA---AT------------------ATGAAAGTGGTGAAAGTAGCAGTCTATTTCTATTTT-----GATTG-TAAAAATTC-AAC-----AATG-TAAGTGTGATTTTG--T--CCA----AAAAAAAGAGGGTCGG
gi|26 : ATTTTATTCATCACAACAACTATTCT-AATACCACAAA-TAA----GTTTT-CTGAATGAT--AT-------------------TGAAAGTGGTGAAAGTAGCCTTCTATTTTTATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-TCAGTGTGATTTTG--T--TAA----AAATAAACAtgg
gi|24 : ATTAATCACAATAGCTACTCT-AATACCACAAA-CAA----GTTTT-CTGAATGA---GT------------------CTGAAAGTGGTGAAAGAAGCATTCTATTT-TATTTT-----GTTTG-TAAAAATTC-AAC-----CAAG-TAAGTGTGATTTTG--TCCCAA----AAAAACACAGGGTCG
gi|2 : c-CTGAATGA---AT------------------ATGAAAGTGGTGAAAGTAGCATTCTATTT-TATTTT-----GTTTG-TAAAAATTC-AAC-----CATG-TAAGTGTGATTTTG--T--CCA----AActggg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|30 ): AATGATTATGGGATTTCTTGCTACATGTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11111111 111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111 11111
lowQualScore : 7777777 333 2222 666 2 33 7777777 444 2 2 33 33 2 777777 55555555 44 3 3 6 3 44 5 111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 3 2 2 4444 2 999999999999999999 2 2 6 6 2 55555 2 6666 11111 5555
lowQualScore : ....... ... .... ... . .. ....... ... . . .. .. . ...... ........ .. . . . . .. . ......... ...................................................................................................... . . . . . .... . .................. . . . . . ..... . .... ..... ....
lowQualScore : 2222222 999 2222 111 2 22 6666666 111 4 4 22 11 2 777777 44444444 22 1 1 2 1 22 7 444444444 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 7 3 2 2 7777 1 222222222222222222 1 1 3 3 2 66666 2 9999 66666 3333
consensus : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTCCTA--AACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CA-A----AAAAAAACAGGGTCGG
Reference ( family-2199 ) : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTNTTA--AACTTCCTNATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CA-A----AAAAAAACAGGGTCGG
gi|1 : AAATGAGGGTGATTGGATGCAAATAA-------GGGATT---TTTTTTTTTTTT---C-GCAC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCT-A-GTATATTAAACTACAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAAT---AAGAGTAATACATATATA--TAGAA-TCATAA-TTT-T-TTA--ATTAAAA-TTTTCG-----TCATTAAAGC--ATA---------ACAGTTGGGAAG---------AG-G---------------T-----------------TGGG---------GG
gi|1 : ggttttgTC-CTAATTTTATTCATCACAACAACTACTCTTAATATCAC-AAATAA----GTTTT-CTGCATGAAT------------------A-TGAAATTGGTGAAAGTAGCATTC-TG-TTT-T-----------GTTTGTAAAAATTCAACCA-CGT----AAGTGTGATTTTGC--CCCA----AAAAAAACgggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaattttattcatcacaacaactactcttaatatcacaaataagttttctgcatgaatatgaaattggtgaaagtagcattctgttttgtttgtaaaaattcaaccacgtaagtgtgattttgccccaaaaaaaac
gi|10 : ggttttgaaatgagggtgattggatgcaaataagggattttttttttttttcgcaccataaaatttgaaaatattgtcatttcggtacaattttacataatttcttaataattctagtatattaaactacaaaagatggtgttttgtcataatatatagagaatataaattaataagagtaatacatatatatagaatcataattttttaattaaaattttcgtcattaaagcataacagttgggaagaggttggggggggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGG-TTT-T-TC---ATTAAAA-TTTTTGTTCCTTCATTAAAGCGTATA---------AAAATTCNNNNNNNNNNNNNNNN-N---------------N-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-TTAATTTTATTCATCACAGCACCTACTCT-TATACCAC-AAACAA----GTTTT-CTGAATGAAG------------------A-TGGAGGTTGCAAAAGAAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATCCAACCA-TGT----AAGTGTGATTTTGTC-CA-A----AAACAAACAGGGACGG
gi|11 : ATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-TTTTT--ATTAAAA-TTTCTGTTTCTTCATTAAACCATATA---------AAAGTT---------------GG------------------------------------TGG---------GGGAGG--G--T---------------ATTA--------TTCCTAATAAGTCTGAATC-CTAATTTTATTCATC---ACAAGTACTCT-AATACCACAAAACAATCACGTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGTA---AAGTGTGATTTTGT--CA-ACAACAAAAAAACAGGtggg
gi|12 : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGCCACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAATCTATAAAAGATGGTG-TTTGTCATAATATATATA--T-AGAATATAAATTAAAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AA
gi|13 : ttttgAAA-TGTTTGTTTTTTCATTAAAGCATATA---------AAAGTT---------------GG-G---------------TGGNNNNNNNNNNNNNNNNNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTCTATTCATC-CAACAACTACCTT-AATACCAT-AAATAA----GTTTT-CAGAATGAAT------------------A-TGAAAGTGATGAAAGTAGCAGTC-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGA-TTTGT--CA-T----AGAAAAA
gi|14 : ACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTATTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTT-TA-TTTAT-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTATGATTTTGT--T--A----AACAAAACAGGGTC
gi|15 : tttttatttaatcctagcagtcttAAATGAGGGAGATCGGATGCAAATGA-------GGGAGA---TTTT----TTTT---TTGCCC--TATACGATTTGAAAACAGTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAA
gi|16 : atgttagaattgattgatatgtgtaattaatatacatgtgaacctttttggaaagcactgagggagattgggttttgAAATGAGGGAGATTGGATGCAAATGATGGTTGAGGGAGA---TTTT----TTTT---C-ACGC--TATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACATATTTTTTAATACATTTTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATagcctcattaaac
gi|17 : gttttgAAATGAGGGGGATTGGATGGAAATGA-------GGGATA---TTTTT---TTTT---C-GCGG--CATAAAGTTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACAATAACAGATGGTGTTTTGTCATA--ATATATA--G-AGAATA
gi|18 : gttttgAAATGAGGGAGATTGGATGAAAATGA-------GGAAGA---TTTT----TTTA---C-GTGG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGATGTTTTGTCATA--ATATATA--G-AGAATAT------
gi|19 : tttaAAATGAGGGGGATTGGATGAAAATGA-------GGGAGA---TTTT----TTT----C-GCTG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TTAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGGTTTTTTGTCATA--ATATATA--G-AGAATA
gi|2 : ttttgAAATGAGGGAGATTGGATGCAAATGA-------GGGATA---TTTT----TTTTTTTC-GTGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAAAAATTAA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATT--ATATATA--G-AGAATTT------AATTTAATAACATGAGT----------T-------A-TCATGATTTT-T-TTT--ATTGAAA-TTTTCGTTTCTTCATTAAAGCATATT---------AAAGT
gi|2 : gttctg-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CC-A----AAAaannnnnnnnnnnnnnnnnnnnnnnnngggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaatgaatatgaaagtggtgaaagtagcattctattttattttgtttgtaaaaattcaaccatgtaagtgtgattttgtccaaaa
gi|20 : gttctgaaatgagggagattggatgcaaatgagggatatttttttttttcgtgccataaaatttgaaaatattgtcatttcggtacaattttacataatttcttaaaaattaaagtatattaaaccataaaagatggtgttttgtcattatatatagagaatttaatttaataacatgagttatcatgattttttttattgaaattttcgtttcttcattaaagcatattaaagtaannnnnnnnnnnnnnnnnnnnnnnnngggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTTT--C-GCAG--CATAAAA--------TATTGTCGTTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAATATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAA
gi|21 : ggttttgAAATGA-------GGGAGA---TTTTT---TTTT---C-GCGT--GATAAAATTAGAAATTTTTGCTATTTCAGTATAGATTAAAG-------TAAT---TTCTTGACAATTCATACATATATTAAACAATAAAAGAATGTGTTTTATCATA--ACAGATA--GAAAAAAAT------AAATGAATAACAAAAG
gi|22 : -CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTTGCATTA-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGA----AAGTGTGATTTTGT--T--A----AAAAAAACAGGATCGG
gi|23 : AAATGAGGGAGATTGGATGGAAATGA-------GAG------TTTT----TTTT---C-GCGG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTATA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGGTGTTCTGTCATA--ATATATC--G-AGAtgggt
gi|24 : ATTAATCACAATAGCTACTCT-AATACCAC-AAACAA----GTTTT-CTGAATGAGT------------------C-TGAAAGTGGTGAAAGAAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-AGT----AAGTGTGATTTTGTCCCA-A----AAAAACACAGGGTCG
gi|25 : cTAATTGTATTCATCCCAACAACTAC--------------AATAG----GTTTT-CTGAAGGAAT------------------A-TGAAAGTGGTGAAAGTAGCAGTC-TA-TTTCT-ATTTT-----GATTGTAAAAATTCAACAA-TGT----AAGTGTGATTTTGT--CC-A----AAAAAAAGAGGGTCGGctggg
gi|26 : ATTTTATTCATCACAACAACTATTCT-AATACCAC-AAATAA----GTTTT-CTGAATG-AT------------------ATTGAAAGTGGTGAAAGTAGCCTTC-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----CAGTGTGATTTTGT--TA-A----AAATAAACAtgg
gi|27 : -CTAATTTTATTCATCACAACAACTACTCT-AATATCAC-AAATAA----GTTTT-CTGAATGA---------------------------GTGGAAAAAGTAGCTTTC-TA-TCT-T-ATTTT-----GTTTGTTAAAATTCAACCA-CGT----AAGTGTGATTTTGTC-CA-A----AAAAAACCAGG
gi|28 : -CTAATTTTATTCATCTCAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TAAAAGTGATGAAAGTAGCAGTCTTT-TTT-T-ATTTT-----GTTTGTAAAAATTCAATCA-TGT----AAGAGTGATTT
gi|29 : ATG--ACATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCATTACTTCATTAAAACAAATA---------AAAG-A---------------AA-G---------------T-----------------TTGA---------GGg
gi|3 : AAATGAGGGAGATTATATGCAAATGA-------GGGAGA---TTTT----TTTT---T-TCGCAACATTAAATTTGAAAATATTGTCATTTCTGTACAATTCTCCA-------TAAT---TTCTTAATAATTCA-A-GCATA--AAACCATAAAAGATGTTTTTTTGTCATA--ATATACA--G-AGAATAT------AAATCAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTTAT-TTT--ATTAAAAATTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTGGG------------AG-GGGGNNNNNNNNNNNNN-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTTGTCACAACAACTACTCT-AATACCAC-AAACAA----GTTTT-CTGAATGAATTAT---------------A-TGAAAGTGGTTAAAGGAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATCCAACCA-TGT----GAGTGTGATTTTGT--CC-A----CAAAAAAgggggtgggggggtggg
gi|31 : gttttgAAATGAGAAATAATAAATACAAATGA-------GAGAGA---TTTT----TTTC---T-GCa
gi|4 : tgaaattggcttttcAAATGACGGAGATTGGATGCAAATTA-------GGGAGA---TTTTTT--TTTT---C-GCAC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAC---TTCTTAATAATTCA-A-GTATATTAAACCATATAAGATTGTGTTTTGTCATA--ATATATA--G-AGAATTT------AAATTAATAATAAGAGTAAT------ATA--TAGAA-TCATGA-TTT-A-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAACATATA---------AAAGTT---------------AG-G---------------G-----------------GTGGTGGGGGGGAGGTAAATCT--TTTGTTAAAACCTGGCATTCCTAATAACTTCCTAATAAGTCGGAATC-CTAATTTTATTCATC---ACAACTACTCT-AATACCAC-AAATAA----GTTTT-C----TGAAT------------------A-TGAATGTGGTGAAGGTACCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AGGTGTGATTTTG----A-G----AAAAAatgaatattgtt
gi|5 : gttttgAATGAGGGAGATTGGATGCAAATGA-------GAGAGA---TTTT----TTTT---C-GCAC--AATAAAATTAGAAATTGCTGCTATTTCGGTATAAATTAAAG-------TAAT---T-CTTGATAATTCA-A-GTATATAAAACTGTAAAAGAAGGTGTTTTACCATA--ATAGATAATG-AAAAAAT------AAATGAATAACAAAAGTA--------AAA--TAGTA-TCG-GG-TTAAT-TTT--ATTAAA--TTTTTATTTCTTC--CAAA----AAA---------AAATTT---------------TT-T---------------T-----------------TT-------------CAAACAT--T---------------ATT-------ACTTTCTTATAAATCTGAATCATTAATTTAATTAATCACCACAACCATTCT-AATAGCAC-AAATA------TTTTATTGAATGAATATTTAAAATGAAATGAAAA-TGAAAGTGGCGAAAGTAAAATTT-TA-TTT-T-ATTTCGTGTGGTTTGTAAAAATCTAACTACTGTATGAAAGTGTGATTTTGT--CC-A----AATAAAACA
gi|6 : aacgcAAATGAGGGAGATTGGATGCAAATGC-------GGGATA---TTTT----TTTT---T-GCGC--CATAAAATTTAAAAATTTTGTCATTTCGGTACAGTTTTACA-------TAAT---TTCATAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATCA-TTT-T-TTA--AGTAAAA-TTTCTGTTTCTTCATTACAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGTAAACCT--T---------------TTTTTTA--AACTTCCTAACAAGTCTGAATC-TTAACTTTATTCATCACAACAACTGTTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTTGTAAAAGTAGCATTA-TA-TTTCT-ATTTT-----GTTTGT-AAAATTCAACCA-TGA----AAGTGTGATTTTGT--CA-A----AATAAAACAGGGTCGG
gi|7 : AAATGA-------GGGAGAGATTTTT----TTTT---T-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAACAATTCA-A-GTATATTGAACCATAAAAGATGGTGTTTT-TCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAG-----------TA--TAGAA-TAATGA-TTT-T-TTT--ATTAAAA-TTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTTGGGGGTGG------AG-G---------------TNNNNNNN----------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTT-CTAATTTTATTCATCCCAACAACTACTCC-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGATGAAAGTAGCAGTG-TA-TTT-TCATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CC-A----AAAAAAAGAG
gi|8 : ttttgAAATGAGTGAGATTGGATGCAAATGA-------GGAAGA---TATT----TTTT---C-GCGC--CATAAAATTTTAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACAATAAAAGATGGTGTTTTGTCATA--ATATATA--T-TGAATAA------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATANNNNNNNNNNNNNNN---------------NN-N---------------N-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTCACCACAACAACTACTT---ATACCAC-ACATAA----GTTTT-CTGAATGAAT------------------A-TGAATGAAGTGAAAGTAGCATTT-TA-TTT-
gi|9 : TTAATAATTAA-A-GTATATTAAACCAAAAAATATGGTGTTT-GTCATA--ATATATA--G--GAATAT------TAATTAATAACAAGAGCA--------ATAAATAGAAATTAT-A-TTT-T-TTTTTATTAAAAATTTTCGATTCTTCATTAAAGCATATA---------AAAGTT---------------AGTG---------------T-----------------T--------------AAAACCTAGC---------------ATTCCTAATAACTTCCTTATAAGTCTGAATC-CTAATTTTATTCGCCACAACAACTACTCT-TATACCAA-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-ATT-T-ATTTT-----GTTTCTAAAAATTCAACCA-TGT----AAGTGTGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATGATTATGGGATTTCTTGCTACATGTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11111111 111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111 11111
lowQualScore : 7777777 333 2222 666 2 33 7777777 444 2 2 33 33 2 777777 55555555 44 3 3 6 3 44 5 111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 3 2 2 4444 2 999999999999999999 2 2 6 6 2 55555 2 6666 11111 5555
lowQualScore : ....... ... .... ... . .. ....... ... . . .. .. . ...... ........ .. . . . . .. . ......... ...................................................................................................... . . . . . .... . .................. . . . . . ..... . .... ..... ....
lowQualScore : 2222222 999 2222 111 2 22 6666666 111 4 4 22 11 2 777777 44444444 22 1 1 2 1 22 7 444444444 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 7 3 2 2 7777 1 222222222222222222 1 1 3 3 2 66666 2 9999 66666 3333
consensus : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTCCTA--AACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CA-A----AAAAAAACAGGGTCGG
Reference ( family-2199 ) : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTCCTA--AACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CA-A----AAAAAAACAGGGTCGG
gi|1 : AAATGAGGGTGATTGGATGCAAATAA-------GGGATT---TTTTTTTTTTTT---C-GCAC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCT-A-GTATATTAAACTACAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAAT---AAGAGTAATACATATATA--TAGAA-TCATAA-TTT-T-TTA--ATTAAAA-TTTTCG-----TCATTAAAGC--ATA---------ACAGTTGGGAAG---------AG-G---------------T-----------------TGGG---------GG
gi|1 : ggttttgTC-CTAATTTTATTCATCACAACAACTACTCTTAATATCAC-AAATAA----GTTTT-CTGCATGAAT------------------A-TGAAATTGGTGAAAGTAGCATTC-TG-TTT-T-----------GTTTGTAAAAATTCAACCA-CGT----AAGTGTGATTTTGC--CCCA----AAAAAAACgggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaattttattcatcacaacaactactcttaatatcacaaataagttttctgcatgaatatgaaattggtgaaagtagcattctgttttgtttgtaaaaattcaaccacgtaagtgtgattttgccccaaaaaaaac
gi|10 : ggttttgaaatgagggtgattggatgcaaataagggattttttttttttttcgcaccataaaatttgaaaatattgtcatttcggtacaattttacataatttcttaataattctagtatattaaactacaaaagatggtgttttgtcataatatatagagaatataaattaataagagtaatacatatatatagaatcataattttttaattaaaattttcgtcattaaagcataacagttgggaagaggttggggggggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGG-TTT-T-TC---ATTAAAA-TTTTTGTTCCTTCATTAAAGCGTATA---------AAAATTCNNNNNNNNNNNNNNNN-N---------------N-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-TTAATTTTATTCATCACAGCACCTACTCT-TATACCAC-AAACAA----GTTTT-CTGAATGAAG------------------A-TGGAGGTTGCAAAAGAAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATCCAACCA-TGT----AAGTGTGATTTTGTC-CA-A----AAACAAACAGGGACGG
gi|11 : ATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-TTTTT--ATTAAAA-TTTCTGTTTCTTCATTAAACCATATA---------AAAGTT---------------GG------------------------------------TGG---------GGGAGG--G--T---------------AT---TA-----TTCCTAATAAGTCTGAATC-CTAATTTTATTCATC---ACAAGTACTCT-AATACCACAAAACAATCACGTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGTA---AAGTGTGATTTTGT--CA-ACAACAAAAAAACAGGtggg
gi|12 : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGCCACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAATCTATAAAAGATGGTG-TTTGTCATAATATATATA--T-AGAATATAAATTAAAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AA
gi|13 : ttttgAAA-TGTTTGTTTTTTCATTAAAGCATATA---------AAAGTT---------------GG-G---------------TGGNNNNNNNNNNNNNNNNNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTCTATTCATC-CAACAACTACCTT-AATACCAT-AAATAA----GTTTT-CAGAATGAAT------------------A-TGAAAGTGATGAAAGTAGCAGTC-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGA-TTTGT--CA-T----AGAAAAA
gi|14 : ACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTATTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTT-TA-TTTAT-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTATGATTTTGT--T--A----AACAAAACAGGGTC
gi|15 : tttttatttaatcctagcagtcttAAATGAGGGAGATCGGATGCAAATGA-------GGGAGA---TTTT----TTTT---TTGCCC--TATACGATTTGAAAACAGTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAA
gi|16 : atgttagaattgattgatatgtgtaattaatatacatgtgaacctttttggaaagcactgagggagattgggttttgAAATGAGGGAGATTGGATGCAAATGATGGTTGAGGGAGA---TTTT----TTTT---C-ACGC--TATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACATATTTTTTAATACATTTTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATagcctcattaaac
gi|17 : gttttgAAATGAGGGGGATTGGATGGAAATGA-------GGGATA---TTTTT---TTTT---C-GCGG--CATAAAGTTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACAATAACAGATGGTGTTTTGTCATA--ATATATA--G-AGAATA
gi|18 : gttttgAAATGAGGGAGATTGGATGAAAATGA-------GGAAGA---TTTT----TTTA---C-GTGG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGATGTTTTGTCATA--ATATATA--G-AGAATAT------
gi|19 : tttaAAATGAGGGGGATTGGATGAAAATGA-------GGGAGA---TTTT----TTT----C-GCTG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TTAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGGTTTTTTGTCATA--ATATATA--G-AGAATA
gi|2 : ttttgAAATGAGGGAGATTGGATGCAAATGA-------GGGATA---TTTT----TTTTTTTC-GTGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAAAAATTAA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATT--ATATATA--G-AGAATTT------AATTTAATAACATGAGT----------T-------A-TCATGATTTT-T-TTT--ATTGAAA-TTTTCGTTTCTTCATTAAAGCATATT---------AAAGT
gi|2 : gttctg-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CC-A----AAAaannnnnnnnnnnnnnnnnnnnnnnnngggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaatgaatatgaaagtggtgaaagtagcattctattttattttgtttgtaaaaattcaaccatgtaagtgtgattttgtccaaaa
gi|20 : gttctgaaatgagggagattggatgcaaatgagggatatttttttttttcgtgccataaaatttgaaaatattgtcatttcggtacaattttacataatttcttaaaaattaaagtatattaaaccataaaagatggtgttttgtcattatatatagagaatttaatttaataacatgagttatcatgattttttttattgaaattttcgtttcttcattaaagcatattaaagtaannnnnnnnnnnnnnnnnnnnnnnnngggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTTT--C-GCAG--CATAAAA--------TATTGTCGTTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAATATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAA
gi|21 : ggttttgAAATGA-------GGGAGA---TTTTT---TTTT---C-GCGT--GATAAAATTAGAAATTTTTGCTATTTCAGTATAGATTAAAG-------TAAT---TTCTTGACAATTCATACATATATTAAACAATAAAAGAATGTGTTTTATCATA--ACAGATA--GAAAAAAAT------AAATGAATAACAAAAG
gi|22 : -CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTTGCATTA-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGA----AAGTGTGATTTTGT--T--A----AAAAAAACAGGATCGG
gi|23 : AAATGAGGGAGATTGGATGGAAATGA-------GAG------TTTT----TTTT---C-GCGG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTATA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGGTGTTCTGTCATA--ATATATC--G-AGAtgggt
gi|24 : ATTAATCACAATAGCTACTCT-AATACCAC-AAACAA----GTTTT-CTGAATGAGT------------------C-TGAAAGTGGTGAAAGAAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-AGT----AAGTGTGATTTTGTCCCA-A----AAAAACACAGGGTCG
gi|25 : cTAATTGTATTCATCCCAACAACTAC--------------AATAG----GTTTT-CTGAAGGAAT------------------A-TGAAAGTGGTGAAAGTAGCAGTC-TA-TTTCT-ATTTT-----GATTGTAAAAATTCAACAA-TGT----AAGTGTGATTTTGT--CC-A----AAAAAAAGAGGGTCGGctggg
gi|26 : ATTTTATTCATCACAACAACTATTCT-AATACCAC-AAATAA----GTTTT-CTGAATG-AT------------------ATTGAAAGTGGTGAAAGTAGCCTTC-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----CAGTGTGATTTTGT--TA-A----AAATAAACAtgg
gi|27 : -CTAATTTTATTCATCACAACAACTACTCT-AATATCAC-AAATAA----GTTTT-CTGAATGA---------------------------GTGGAAAAAGTAGCTTTC-TA-TCT-T-ATTTT-----GTTTGTTAAAATTCAACCA-CGT----AAGTGTGATTTTGTC-CA-A----AAAAAACCAGG
gi|28 : -CTAATTTTATTCATCTCAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TAAAAGTGATGAAAGTAGCAGTCTTT-TTT-T-ATTTT-----GTTTGTAAAAATTCAATCA-TGT----AAGAGTGATTT
gi|29 : ATG--ACATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCATTACTTCATTAAAACAAATA---------AAAG-A---------------AA-G---------------T-----------------TTGA---------GGg
gi|3 : AAATGAGGGAGATTATATGCAAATGA-------GGGAGA---TTTT----TTTT---T-TCGCAACATTAAATTTGAAAATATTGTCATTTCTGTACAATTCTCCA-------TAAT---TTCTTAATAATTCA-A-GCATA--AAACCATAAAAGATGTTTTTTTGTCATA--ATATACA--G-AGAATAT------AAATCAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTTAT-TTT--ATTAAAAATTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTGGG------------AG-GGGGNNNNNNNNNNNNN-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTTGTCACAACAACTACTCT-AATACCAC-AAACAA----GTTTT-CTGAATGAATTAT---------------A-TGAAAGTGGTTAAAGGAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATCCAACCA-TGT----GAGTGTGATTTTGT--CC-A----CAAAAAAgggggtgggggggtggg
gi|31 : gttttgAAATGAGAAATAATAAATACAAATGA-------GAGAGA---TTTT----TTTC---T-GCa
gi|4 : tgaaattggcttttcAAATGACGGAGATTGGATGCAAATTA-------GGGAGA---TTTTTT--TTTT---C-GCAC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAC---TTCTTAATAATTCA-A-GTATATTAAACCATATAAGATTGTGTTTTGTCATA--ATATATA--G-AGAATTT------AAATTAATAATAAGAGTAAT------ATA--TAGAA-TCATGA-TTT-A-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAACATATA---------AAAGTT---------------AG-G---------------G-----------------GTGGTGGGGGGGAGGTAAATCT--TTTGTTAAAACCTGGCATTCCTAATAACTTCCTAATAAGTCGGAATC-CTAATTTTATTCATC---ACAACTACTCT-AATACCAC-AAATAA----GTTTT-C----TGAAT------------------A-TGAATGTGGTGAAGGTACCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AGGTGTGATTTTG----A-G----AAAAAatgaatattgtt
gi|5 : gttttgAATGAGGGAGATTGGATGCAAATGA-------GAGAGA---TTTT----TTTT---C-GCAC--AATAAAATTAGAAATTGCTGCTATTTCGGTATAAATTAAAG-------TAAT---T-CTTGATAATTCA-A-GTATATAAAACTGTAAAAGAAGGTGTTTTACCATA--ATAGATAATG-AAAAAAT------AAATGAATAACAAAAGTA--------AAA--TAGTA-TCG-GG-TTAAT-TTT--ATTAAA--TTTTTATTTCTTC--CAAA----AAA---------AAATTT---------------TT-T---------------T-----------------TT-------------CAAACAT--T---------------ATT-------ACTTTCTTATAAATCTGAATCATTAATTTAATTAATCACCACAACCATTCT-AATAGCAC-AAATA------TTTTATTGAATGAATATTTAAAATGAAATGAAAA-TGAAAGTGGCGAAAGTAAAATTT-TA-TTT-T-ATTTCGTGTGGTTTGTAAAAATCTAACTACTGTATGAAAGTGTGATTTTGT--CC-A----AATAAAACA
gi|6 : aacgcAAATGAGGGAGATTGGATGCAAATGC-------GGGATA---TTTT----TTTT---T-GCGC--CATAAAATTTAAAAATTTTGTCATTTCGGTACAGTTTTACA-------TAAT---TTCATAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATCA-TTT-T-TTA--AGTAAAA-TTTCTGTTTCTTCATTACAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGTAAACCT--T---------------TTTTTTA--AACTTCCTAACAAGTCTGAATC-TTAACTTTATTCATCACAACAACTGTTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTTGTAAAAGTAGCATTA-TA-TTTCT-ATTTT-----GTTTGT-AAAATTCAACCA-TGA----AAGTGTGATTTTGT--CA-A----AATAAAACAGGGTCGG
gi|7 : AAATGA-------GGGAGAGATTTTT----TTTT---T-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAACAATTCA-A-GTATATTGAACCATAAAAGATGGTGTTTT-TCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAG-----------TA--TAGAA-TAATGA-TTT-T-TTT--ATTAAAA-TTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTTGGGGGTGG------AG-G---------------TNNNNNNN----------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTT-CTAATTTTATTCATCCCAACAACTACTCC-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGATGAAAGTAGCAGTG-TA-TTT-TCATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CC-A----AAAAAAAGAG
gi|8 : ttttgAAATGAGTGAGATTGGATGCAAATGA-------GGAAGA---TATT----TTTT---C-GCGC--CATAAAATTTTAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACAATAAAAGATGGTGTTTTGTCATA--ATATATA--T-TGAATAA------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATANNNNNNNNNNNNNNN---------------NN-N---------------N-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTCACCACAACAACTACTT---ATACCAC-ACATAA----GTTTT-CTGAATGAAT------------------A-TGAATGAAGTGAAAGTAGCATTT-TA-TTT-
gi|9 : TTAATAATTAA-A-GTATATTAAACCAAAAAATATGGTGTTT-GTCATA--ATATATA--G--GAATAT------TAATTAATAACAAGAGCA--------ATAAATAGAAATTAT-A-TTT-T-TTTTTATTAAAAATTTTCGATTCTTCATTAAAGCATATA---------AAAGTT---------------AGTG---------------T-----------------T--------------AAAACCTAGC---------------ATTCCTAATAACTTCCTTATAAGTCTGAATC-CTAATTTTATTCGCCACAACAACTACTCT-TATACCAA-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-ATT-T-ATTTT-----GTTTCTAAAAATTCAACCA-TGT----AAGTGTGAT
blockSeqs : TGGTTGA GAT TT TTT T AA TATTTTT ACA T C AT AT A AAATTA AT AA A T A T TT A NNNNNNNNN AGGGGTGGTGGGGGGGAGGTAAATCTTTTGTTAAAACCTGGCATTCCTAATA A A . A TCAC A ATTTAAAATGAAATGAAA T T T A C GTGTG C ATGA CCCA CAAC
blockSeqs : . . T T . . . . . . . . . . . . . . A . . A . GGGAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A . . . . TAT . . T C . . . A CCA .
blockSeqs : . . T . . . . . . . . . . . . . . . . . . . . GGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A . . . . . . . T C . . . . CCA .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . TGGGGGTGGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A . . . . . . . . . . . . . CA .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . AGGTTTGGGGTAAACCTTTTTTTTAA . C . . . . . . . . . . . . . CA .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNN . A . . . . . . . . . . . . . CC .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . AGTGTTAAAACCTAGCATTCCTAATA . A . . . . . . . . . . . . . CC .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . GGTGGGGGAGGGTATTA . T . . . . . . . . . . . . . TA .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . TTTTTTCAAACATTATT . A . . . . . . . . . . . . . CC .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . CC .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . CA .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . CC .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . A . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : **** ******** CC***
originalCons : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTCCTA--AACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGT--CA-A----AAAAAAACAGGGTCGG
finalCons : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTCCTA--AACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTGTCC---A----AAAAAAACAGGGTCGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATGATTATGGGATTTCTTGCTACATGTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11111111 111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111
lowQualScore : 7777777 333 2222 666 2 33 7777777 444 2 2 33 33 2 777777 55555555 44 3 3 6 3 44 5 111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 3 2 2 4444 2 999999999999999999 2 2 6 6 2 55555 2 6666 2 7777 33 2 2 3
lowQualScore : ....... ... .... ... . .. ....... ... . . .. .. . ...... ........ .. . . . . .. . ......... ...................................................................................................... . . . . . .... . .................. . . . . . ..... . .... . .... .. . . .
lowQualScore : 2222222 999 2222 111 2 22 6666666 111 4 4 22 11 2 777777 44444444 22 1 1 2 1 22 7 444444444 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 7 3 2 2 7777 1 222222222222222222 1 1 3 3 2 66666 2 9999 5 2222 44 7 7 1
consensus : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTCCTA--AACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTG-T-C--CA--AAAA-AA-A-CAGGGTCGG
Reference ( family-2199 ) : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGNAAACCT--T---------------ATTCCTA--AACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTG-T-C--CA--AAAA-AA-A-CAGGGTCGG
gi|1 : AAATGAGGGTGATTGGATGCAAATAA-------GGGATT---TTTTTTTTTTTT---C-GCAC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCT-A-GTATATTAAACTACAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAAT---AAGAGTAATACATATATA--TAGAA-TCATAA-TTT-T-TTA--ATTAAAA-TTTTCG-----TCATTAAAGC--ATA---------ACAGTTGGGAAG---------AG-G---------------T-----------------TGGG---------GG
gi|1 : ggttttgTC-CTAATTTTATTCATCACAACAACTACTCTTAATATCAC-AAATAA----GTTTT-CTGCATGAAT------------------A-TGAAATTGGTGAAAGTAGCATTC--------T-GTTTT-----GTTTGTAAAAATTCAACCA-CGT----AAGTGTGATTTTGCC-C--CA--AAAA-AA-A-gggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctaattttattcatcacaacaactactcttaatatcacaaataagttttctgcatgaatatgaaattggtgaaagtagcattctgttttgtttgtaaaaattcaaccacgtaagtgtgattttgccccaaaaaaaac
gi|10 : ggttttgaaatgagggtgattggatgcaaataagggattttttttttttttcgcaccataaaatttgaaaatattgtcatttcggtacaattttacataatttcttaataattctagtatattaaactacaaaagatggtgttttgtcataatatatagagaatataaattaataagagtaatacatatatatagaatcataattttttaattaaaattttcgtcattaaagcataacagttgggaagaggttggggggggggggggggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGG-TTT-T-TC---ATTAAAA-TTTTTGTTCCTTCATTAAAGCGTATA---------AAAATTCNNNNNNNNNNNNNNNN-N---------------N-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-TTAATTTTATTCATCACAGCACCTACTCT-TATACCAC-AAACAA----GTTTT-CTGAATGAAG------------------A-TGGAGGTTGCAAAAGAAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATCCAACCA-TGT----AAGTGTGATTTTG-T-C--CA--AAAACAA-A-CAGGGACGG
gi|11 : ATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-TTTTT--ATTAAAA-TTTCTGTTTCTTCATTAAACCATATA---------AAAGTT---------------GG------------------------------------TGG---------GGGAGG--G--T---------------AT---TA-----TTCCTAATAAGTCTGAATC-CTAATTTTATTCATC---ACAAGTACTCT-AATACCACAAAACAATCACGTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGTA---AAGTGTGATTTTG-T-CAACAACAAAA-AA-A-CAGGtggg
gi|12 : AAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTT---C-GCGC--CATAAAATTTGAAAATATTGTCATTTCGCCACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAATCTATAAAAGATGGTG-TTTGTCATAATATATATA--T-AGAATATAAATTAAAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATA---------AA
gi|13 : ttttgAAA-TGTTTGTTTTTTCATTAAAGCATATA---------AAAGTT---------------GG-G---------------TGGNNNNNNNNNNNNNNNNNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTCTATTCATC-CAACAACTACCTT-AATACCAT-AAATAA----GTTTT-CAGAATGAAT------------------A-TGAAAGTGATGAAAGTAGCAGTC-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGA-TTTG-T-CA-TA--GAAA-AA-
gi|14 : ACTTCCTAATAAGTCTGAATC-CTAATTTTATTCATCACAACAACTATTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTT-TA-TTTAT-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTATGATTTTG-T----TA--AACA-AA-A-CAGGGTC
gi|15 : tttttatttaatcctagcagtcttAAATGAGGGAGATCGGATGCAAATGA-------GGGAGA---TTTT----TTTT---TTGCCC--TATACGATTTGAAAACAGTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAA
gi|16 : atgttagaattgattgatatgtgtaattaatatacatgtgaacctttttggaaagcactgagggagattgggttttgAAATGAGGGAGATTGGATGCAAATGATGGTTGAGGGAGA---TTTT----TTTT---C-ACGC--TATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACATATTTTTTAATACATTTTTAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATagcctcattaaac
gi|17 : gttttgAAATGAGGGGGATTGGATGGAAATGA-------GGGATA---TTTTT---TTTT---C-GCGG--CATAAAGTTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACAATAACAGATGGTGTTTTGTCATA--ATATATA--G-AGAATA
gi|18 : gttttgAAATGAGGGAGATTGGATGAAAATGA-------GGAAGA---TTTT----TTTA---C-GTGG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGATGTTTTGTCATA--ATATATA--G-AGAATAT------
gi|19 : tttaAAATGAGGGGGATTGGATGAAAATGA-------GGGAGA---TTTT----TTT----C-GCTG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TTAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGGTTTTTTGTCATA--ATATATA--G-AGAATA
gi|2 : ttttgAAATGAGGGAGATTGGATGCAAATGA-------GGGATA---TTTT----TTTTTTTC-GTGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAAAAATTAA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATT--ATATATA--G-AGAATTT------AATTTAATAACATGAGT----------T-------A-TCATGATTTT-T-TTT--ATTGAAA-TTTTCGTTTCTTCATTAAAGCATATT---------AAAGT
gi|2 : gttctg-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTG-T-C--CA--AAAaannnnnnnnnnnnnnnnnnnnnnnnngggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaatgaatatgaaagtggtgaaagtagcattctattttattttgtttgtaaaaattcaaccatgtaagtgtgattttgtccaaaa
gi|20 : gttctgaaatgagggagattggatgcaaatgagggatatttttttttttcgtgccataaaatttgaaaatattgtcatttcggtacaattttacataatttcttaaaaattaaagtatattaaaccataaaagatggtgttttgtcattatatatagagaatttaatttaataacatgagttatcatgattttttttattgaaattttcgtttcttcattaaagcatattaaagtaannnnnnnnnnnnnnnnnnnnnnnnngggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATGAGGGAGATTGGATGCAAATGA-------GGGAGA---TTTT----TTTTT--C-GCAG--CATAAAA--------TATTGTCGTTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACCATAAAATATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAA
gi|21 : ggttttgAAATGA-------GGGAGA---TTTTT---TTTT---C-GCGT--GATAAAATTAGAAATTTTTGCTATTTCAGTATAGATTAAAG-------TAAT---TTCTTGACAATTCATACATATATTAAACAATAAAAGAATGTGTTTTATCATA--ACAGATA--GAAAAAAAT------AAATGAATAACAAAAG
gi|22 : -CTAATTTTATTCATCACAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTTGCATTA-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGA----AAGTGTGATTTTG-T----TA--AAAA-AA-A-CAGGATCGG
gi|23 : AAATGAGGGAGATTGGATGGAAATGA-------GAG------TTTT----TTTT---C-GCGG--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTATA-------TAAT---TTCTTAATAATACA-A-GTATATTAAACCATAACAGATGGTGTTCTGTCATA--ATATATC--G-AGAtgggt
gi|24 : ATTAATCACAATAGCTACTCT-AATACCAC-AAACAA----GTTTT-CTGAATGAGT------------------C-TGAAAGTGGTGAAAGAAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-AGT----AAGTGTGATTTTG-TCC--CA--AAAA-AACA-CAGGGTCG
gi|25 : cTAATTGTATTCATCCCAACAACTAC--------------AATAG----GTTTT-CTGAAGGAAT------------------A-TGAAAGTGGTGAAAGTAGCAGTC-TA-TTTCT-ATTTT-----GATTGTAAAAATTCAACAA-TGT----AAGTGTGATTTTG-T-C--CA--AAAA-AA-A-GAGGGTCGGctggg
gi|26 : ATTTTATTCATCACAACAACTATTCT-AATACCAC-AAATAA----GTTTT-CTGAATG-AT------------------ATTGAAAGTGGTGAAAGTAGCCTTC-TATTTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----CAGTGTGATTTTG-T-T--AA--AAAT-AA-A-CAtgg
gi|27 : -CTAATTTTATTCATCACAACAACTACTCT-AATATCAC-AAATAA----GTTTT-CTGAATGA---------------------------GTGGAAAAAGTAGCTTTC-TA-TCT-T-ATTTT-----GTTTGTTAAAATTCAACCA-CGT----AAGTGTGATTTTG-T-C--CA--AAAA-AA-ACCAGG
gi|28 : -CTAATTTTATTCATCTCAACAACTACTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TAAAAGTGATGAAAGTAGCAGTCTTT-TTT-T-ATTTT-----GTTTGTAAAAATTCAATCA-TGT----AAGAGTGATTT
gi|29 : ATG--ACATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCATTACTTCATTAAAACAAATA---------AAAG-A---------------AA-G---------------T-----------------TTGA---------GGg
gi|3 : AAATGAGGGAGATTATATGCAAATGA-------GGGAGA---TTTT----TTTT---T-TCGCAACATTAAATTTGAAAATATTGTCATTTCTGTACAATTCTCCA-------TAAT---TTCTTAATAATTCA-A-GCATA--AAACCATAAAAGATGTTTTTTTGTCATA--ATATACA--G-AGAATAT------AAATCAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTTAT-TTT--ATTAAAAATTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTGGG------------AG-GGGGNNNNNNNNNNNNN-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTTGTCACAACAACTACTCT-AATACCAC-AAACAA----GTTTT-CTGAATGAATTAT---------------A-TGAAAGTGGTTAAAGGAGCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATCCAACCA-TGT----GAGTGTGATTTTG-T-C--CA--CAAA-AA-A-gggggtgggggggtggg
gi|31 : gttttgAAATGAGAAATAATAAATACAAATGA-------GAGAGA---TTTT----TTTC---T-GCa
gi|4 : tgaaattggcttttcAAATGACGGAGATTGGATGCAAATTA-------GGGAGA---TTTTTT--TTTT---C-GCAC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAC---TTCTTAATAATTCA-A-GTATATTAAACCATATAAGATTGTGTTTTGTCATA--ATATATA--G-AGAATTT------AAATTAATAATAAGAGTAAT------ATA--TAGAA-TCATGA-TTT-A-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAACATATA---------AAAGTT---------------AG-G---------------G-----------------GTGGTGGGGGGGAGGTAAATCT--TTTGTTAAAACCTGGCATTCCTAATAACTTCCTAATAAGTCGGAATC-CTAATTTTATTCATC---ACAACTACTCT-AATACCAC-AAATAA----GTTTT-C----TGAAT------------------A-TGAATGTGGTGAAGGTACCATTC-TA-TTT-T-ATTTT-----GTTTGTAAAAATTCAACCA-TGT----AGGTGTGATTTTG-------A--GAAA-AA-atgaatattgtt
gi|5 : gttttgAATGAGGGAGATTGGATGCAAATGA-------GAGAGA---TTTT----TTTT---C-GCAC--AATAAAATTAGAAATTGCTGCTATTTCGGTATAAATTAAAG-------TAAT---T-CTTGATAATTCA-A-GTATATAAAACTGTAAAAGAAGGTGTTTTACCATA--ATAGATAATG-AAAAAAT------AAATGAATAACAAAAGTA--------AAA--TAGTA-TCG-GG-TTAAT-TTT--ATTAAA--TTTTTATTTCTTC--CAAA----AAA---------AAATTT---------------TT-T---------------T-----------------TT-------------CAAACAT--T---------------ATT-------ACTTTCTTATAAATCTGAATCATTAATTTAATTAATCACCACAACCATTCT-AATAGCAC-AAATA------TTTTATTGAATGAATATTTAAAATGAAATGAAAA-TGAAAGTGGCGAAAGTAAAATTT-TA-TTT-T-ATTTCGTGTGGTTTGTAAAAATCTAACTACTGTATGAAAGTGTGATTTTG-T-C--CA--AATA-AA-A-CA
gi|6 : aacgcAAATGAGGGAGATTGGATGCAAATGC-------GGGATA---TTTT----TTTT---T-GCGC--CATAAAATTTAAAAATTTTGTCATTTCGGTACAGTTTTACA-------TAAT---TTCATAATAATTCA-A-GTATATTAAACCATAAAAGATGGTGTTTTGTCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATCA-TTT-T-TTA--AGTAAAA-TTTCTGTTTCTTCATTACAGCATATA---------AAAGTT---------------AG-G---------------T-----------------TTGG---------GGTAAACCT--T---------------TTTTTTA--AACTTCCTAACAAGTCTGAATC-TTAACTTTATTCATCACAACAACTGTTCT-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTTGTAAAAGTAGCATTA-TA-TTTCT-ATTTT-----GTTTGT-AAAATTCAACCA-TGA----AAGTGTGATTTTG-T-C--AA--AATA-AA-A-CAGGGTCGG
gi|7 : AAATGA-------GGGAGAGATTTTT----TTTT---T-GCGC--CATAAAATTTGAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAACAATTCA-A-GTATATTGAACCATAAAAGATGGTGTTTT-TCATA--ATATATA--G-AGAATAT------AAATTAATAACAAGAG-----------TA--TAGAA-TAATGA-TTT-T-TTT--ATTAAAA-TTTTTGTTTCTTCATTAAAGCATATA---------AAAGTTTGGGGGTGG------AG-G---------------TNNNNNNN----------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTT-CTAATTTTATTCATCCCAACAACTACTCC-AATACCAC-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGATGAAAGTAGCAGTG-TA-TTT-TCATTTT-----GTTTGTAAAAATTCAACCA-TGT----AAGTGTGATTTTG-T-C--CA--AAAA-AA-A-GAG
gi|8 : ttttgAAATGAGTGAGATTGGATGCAAATGA-------GGAAGA---TATT----TTTT---C-GCGC--CATAAAATTTTAAAATATTGTCATTTCGGTACAATTTTACA-------TAAT---TTCTTAATAATTCA-A-GTATATTAAACAATAAAAGATGGTGTTTTGTCATA--ATATATA--T-TGAATAA------AAATTAATAACAAGAGTA--------ATA--TAGAA-TCATGA-TTT-T-TTT--ATTAAAA-TTTTCGTTTCTTCATTAAAGCATATANNNNNNNNNNNNNNN---------------NN-N---------------N-----------------NNNN---------NNNNNNNNN--N---------------NNNNNNN--NNNNNNNNNNNNNNNNNNNNTC-CTAATTTTATTCACCACAACAACTACTT---ATACCAC-ACATAA----GTTTT-CTGAATGAAT------------------A-TGAATGAAGTGAAAGTAGCATTT-TA-TTT-
gi|9 : TTAATAATTAA-A-GTATATTAAACCAAAAAATATGGTGTTT-GTCATA--ATATATA--G--GAATAT------TAATTAATAACAAGAGCA--------ATAAATAGAAATTAT-A-TTT-T-TTTTTATTAAAAATTTTCGATTCTTCATTAAAGCATATA---------AAAGTT---------------AGTG---------------T-----------------T--------------AAAACCTAGC---------------ATTCCTAATAACTTCCTTATAAGTCTGAATC-CTAATTTTATTCGCCACAACAACTACTCT-TATACCAA-AAATAA----GTTTT-CTGAATGAAT------------------A-TGAAAGTGGTGAAAGTAGCATTC-TA-ATT-T-ATTTT-----GTTTCTAAAAATTCAACCA-TGT----AAGTGTGAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATGATTATGGGATTTCTTGCTACATGTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT