lowQualScore : 1 3333 11111111111111 11 11 11
lowQualScore : 5555 2 6 2 2 2 2 55 2 33 4 4 1111 2 88888888 44444444444444 77777 666666 6 3 6 4 2 22 7777 6666 6 3 7 6 333 6 5 2 6 33 88 2 22 2 2 33 6
lowQualScore : .... . . . . . . .. . .. . . .... . ........ .............. ..... ...... . . . . . .. .... .... . . . . ... . . . . .. .. . .. . . .. .
lowQualScore : 3333 5 3 6 1 2 2 99 4 99 2 8 1111 4 55555555 77777777777777 77777 444444 2 3 2 0 8 99 4444 6666 9 6 6 5 999 2 9 2 6 22 77 1 33 1 1 66 2
consensus : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTT-ACATTTTG-AAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACACGAAAACATGTC-AAACGATATACCCTTGATGANAACAA-T-TAAATAGTTATTGTTTTA--------TAA--------------TGTTCAACTAT----NATTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAG---TAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACC--T-ATCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
Reference ( gi|2 ) : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAAGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTT-ACATTTTG-AAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAATGATATACCCGTGATGACAAT-A-T-TAAATAGTTATTGTTTTA--------TAA--------------TGTTCAACTAT----AATTT------AACGTTATTGTGTGTGTACGGAAAGGCCAAAAACGTATTTCCCACCATCTGTCAAATGGCAC--CTGATAACCAATCAAAATCATA----CA----AGACATTTGCACTGTGCAATCGGAAA---TAACTAGGCAAGGCAAATGTTGGACTTGTTTAGGAACGTAAAATATTA-ATTTTATAAGCAAAACACGACC--T-TTCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTATGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTGATGGATCATAGATTCAGTGA
gi|3 : TGCATTTTT----T-GGCGAAATCCAAGTTTCTACATTTACGAAGGCTATTCATATCCGGTATTGACATGGATTGAATATGTCGTCATTGTATGATTAGCCAAAATTTAAGCCTT-ACATTTTG-AAGGTTAGAAATTTGGTTA-GAATATAT--CAAAACTATAACATAATAAACATGAAAACATTTC-AAACAATATAACCTTGATGACAAA-ATT-TAAATAGTAATTGTTTTA--------TAA--------------TGTTCAACTAT----AATTT------AACAATATGGTGTGTGTACAGAAAGACCGAAAACGTATTTCCCACCATCTGTCAAACAGCAC--CTGATAACAAATCAAAACTATA----CA----AGATATTCGCATCATGCAACCAGAAG---CAACTAAGCAAGGCAACTGATGGATTCGTTTAAGATCA-AAAATATTC-ATTTTATAGGCAAAACATGACC--C-ATCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTATGCTA-TAACTTT-ATTTCATCGAAATCGGTCATGGATC-TAGATTCAG
gi|5 : TGCATTTTT----TACGCGAAATCTAAGATTCTACATTTACAAAGGCTGTACACATTCGGTACTGATACGGAGTTAATATGTCGTCATTGAATGATAAGCCAAAATTTAAACCTT-ACATTTTG-AAGGTTTGAAATTTGGTTA-GAATATAT--CAGAAAGATTACATAATAAACACGAAAACATGTC-AAATTATATACCCTTGGCGA-AATAA-T-TGAATAGTTATTGTTTCA--------TAA--------------TGTTCAACTAT----CATTT------AACGTTATCGTGTGCGTACGGAAAGGCCAAAAACGTATTTCCCGCCATCTGTCAACCGGCAC--TTGATAACCAATCAAAACCATA----CA----AGATATTCGCAACGTGAAACCGGAAG---TAACTTGGCAACGCAAATGTTTGAATAGTTTAGGAACGTAAAATATTA-ATTTTATAGGTAAAACAAGACT--T-ATCTGTTGTTATTACATGATGTTAATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTAACATCGGCCATGGATCATGAATc
gi|1 : TGTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGATTGAATATGTGGTCATTACATGATTAGCCAAAATTTAAACCTT-ACATATTG-AAGGTTTGAAATTTGGTTA-GAATATAT--GAAAAATATTACATAATTAACACAAAAACATGTC-AAACGATAAACTCTTGATGACAAC-AAT-TAGATAATTATTGTTTTA--------TAAATATTGTTTTATAATGTTCAACTAT----AATTTTAAAAAAATGATACCGTTTGTGTACGGAAAGACCGAAAACATATTTCCCACCGTCTGTCAAACGGCAC--CTGATAACCAATCAAAAT--------------------TCACACCATGCAACCAGGAA---TAACTAGGCAAGGCAAATGTTGAACTCGTTTAGGAACATAAAATATTA-ATTTTATAGGCAAAACATGACC--T-ATCTGTTGTAATTGCATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAACTTTCATTTTATTGAAATAGG-------TCACGGATTCAGTGA
gi|6 : TGCATTTTT----C-CGCGATATCCAAATTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGAGTAAATATGTCGTCATGG-ATGATAAGCCAAAATTTAAACCTA-ACGGTTTG-AAGGTTTGAAATTTGGTTA-GACTATAT--CAGAAATTTTACATAATACACAAGAAAACATGTG-AAATTATATACCCTTGCTGAAAACAA-T-TGAATAGTTATTGTTTTG--------TAA--------------TGTTCAACTAT----CATTT------ATTGTTATTGTGTGTGCACGACAAAACC-GGAACGTATTACCCGCTATCTGTCAAACGGCAT--CTGATAACAAATCAAAATCTAA----CT----GGATATTCGCACCGTGCAACCGGAAG---TTTCTTAGCAAAGCAAGTGTTGAACTCGTTTAACAACGTAAAATATTA-TTTTTATAGGTAAAACACGACTTAT-CTCTGTTGTTATTACATGATGTATATGTTTGGAATATTA-TTTTCTACTTACGCTA-TAGCTTT-ATTACATTGAAATCGGCCATGGATCAT
gi|7 : TGCATTTTT----C-CGCGAATTTCAAGTTTCTACATTTACGAAGGCTGTACAAATCCGGTACTAACACGGAGTGAATATGTCCTAGTTGCATGATATGCCAAAATTTAAACCTT-ACATTTTG-AAGGTTTGAAAT--------------AT--GAGAAGTATTACATAATAAACATGAAAACATTAC-AAAATATATACCCTTGGTAAAAAC-AAT-TAAATGGTTCTTGTTTTA--------TAA--------------TGTTCAACTAT----CATTT------AAAGTTAGCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCTCGCCATCTGTCAAATGGCAC--CTGATAACCATTCAAAATCAAA----CA----AGTTATTTGTACCGTGCAACCGGAAG---TAACCAGGCAGAGCAAATGTTGGA-TCATTTAGGAATGTAAAATATTA-ATTTTATAGGTAAAACACGACT--T-ATCTGTTGTACCTACATGATGTATATGTTCAGAATATTATTTTTCTACTTGCGCTT-TAACCTT-ATTTTATTGAAATCGGTCATGGA
gi|9 : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACAGTTACGAAGGATGTACACATCCGGTACTAACAAGGACTGAACATGTCGT-ATTACCTGATTTGCCAAAATTTAAACTTT-ACATTTTG-AAAGTTTGAAATTTGGTTA-GAATATATA-AAAAAATATTACATATTAAACACGAAATCATGTC-TAATTATATACCCTTGATGAAAACAA-T-TAAATATTTATTGTTTTA--------TCA--------------TGTTGAATTAT----CATTT------AAGGCCATCGTGTGTGTACGGAAAGA-AAGAAAAGTATTTCCCGCCATCTGTCAAACGG-----CT------------------------CA----AGATATTCGCACCGTGCAACCGGAAG---TAACTAGGCAAGGCAAATGTTGGAATCGTTTAGGAACGTAAAATATTA-ATTTTATGGGCAAAACACGACC--T-ATCT-TTGTTATTACATGATGTGTATGTTTGGAATACTA-TTTTCTACTTACGATA-TAACTTT-ATTTCATTGGACTCGATCATGGATCATGGATTCAGTcgcagt
gi|12 : TGCATTTTC----C-CCAAAAATCCAAGTTTCTACTTTTACGAAGGGTGTACACATCCGGTACTGACACGGAGTGAATATGTTGTCATTGTATGATTAGCCAAAATTTAAACCTT-ACATTTTG-AAGGTTTGAAATTTGGTTA-GAATATATATCAGAAATATTACATAATAAACATGAAAACAAGTC-AAATTATATACTCTTGGTGAAAAC-AAT-TAAATGGTTATTATTTCAGAAATTCATAA--------------TGTTCAACTATCTTAAATTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACGTATTTCCCACCAACTGTCAAATGGTAC--CTGATAACCAGTCAAAATCATA----CA----AGATATTCGCATCGTGCAACCGGAAA---TAACTAGGCACCGCAAATGTTAGAATTGTTTAGGAACGTAAAATATTA-ATCTTAT
gi|17 : TGCATTTTT----C-CATGAAATCCAAGTTTCTACATTT------------TACATCCGGTTCTGACACAGACTGAATATGTCAGCATTGCATGATTAGCCAAAATTTAAACCTT-ACATTATG-AAGGTTTGAAGTTTTATTAGGAATATAT--AAAAAATATTACATAATCAACATGAAAACATGTA-AAATTATATATCCTTGATGAAAACAA-T-TAAATAGTTATTGTTTTA--------TAA--------------TGATCATCTAT----CATTT------AACGGTATCGTATGTGTACGGAAAGACCGAAAAAGTATTTCCCGCCATCTGTCAAACG
gi|14 : GTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAATGCTGTACACACTCGGTACTGACACGGATGGAACATGTCGTCATTGCATGATTAGCCACAATTTAAACCTT-ATATTTTT-AAGGTTTGAAATTTGGTTA-GAATATAT--CGAAAATATTACATAATAAACATGAAAACATGTC-AAACAATATACCCTTGATGACAACAA-T-TAGATAGTTACTGTTTTA--------TAA--------------AGTTCAACTAT----AATTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGTAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAA---TA
gi|13 : GTATTTTT----C-CACGAAATCCAAATTTCTACATTTACACAGGCTGTACACATGAGGTACTGACATGGAGTATATGTGTCATCATTGCATGATTAGCCAATATTTAAACCTT-GCATTTTA-AAGGTTTGAAATTTTGTGA-GAATATAT--CAGAAATATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-N-N-NNNNN---------TTTG--------TAA--------------TGTTCAGCTAT----CATTT------AACGTTATCTTGTGTGTATGGAAAGACCGAAA-CATATTTCCTGCCATCTGTCAAATGGTAC--CTGATAACCAATTAAAATCATA----AA----AGTTTTTTGCATAGTGCAACCGGATG---TAACTAAGCAGAGCAAA--------TCATTAAGGAACATAAAATATTT-ATTTTATAGGTAAAACACAACT--T-ATCTGTTGTT
gi|4 : CATTTTC----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTATTGAAACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTT-ACATTTTG-AAGGTTTGAAATTTGGTTA-GAATATAT--AGAAAATATTACAAAATAAACATGAAAACATGTCAAAACGATATACCCTTGATGACAACAA-T-TAAATAGTTATTGTTTTA--------TAA--------------TATTCGATTAT----AATTT------AATGTTATCGTGTGTGTACGTAAAGATCGAAAACGTA-TTCCCGCCATCTGTCATACGGTAC--CTGATAACCAATAAAAATCGTA----CA----AGATATTTGCACCGTGCATCCGGAAA---TAACTTGGCAAGGCAAATGTTGGACTCG-TTAGTAACGTAAAATA-TG-ATTTTATAGGCAAAACACGACC--T-ATCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAGCTTT-ATTTCATTGGAATCGGTCAATGATAATCGATTCAGTGA
gi|16 : CATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAGGGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATAATTAGCCAAAATTTAAACCTT-ACATTTTG-AAGGTTTGAAATTTGGTTT-GAATATAT--CAAAAATATTACATAATAAACATG-AATCATGTC-AAACGATATGCCTTTGATGACA---A-T-TAAATAGTTATTGTTTTA--------TAA--------------TGTTCAACTAT----AATTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACATATTTC---CCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCACACCATGCAACCGGA
gi|8 : tATTTTTTCCCC-CGCGAAATCCAAGTTTCTTCATTTACGAAGGCTGTACACATCCGATACTGACACGGATTAAATATGTCGTCATTGCATGATTAACCAAAATTTAAACCTT-ACAATTTG-AAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACAAAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGAAAAC-AAT-TAAATAGTTATTATTTTA--------TAA--------------TGTTCAACTAT----AATTT------AACGTTATCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----AA----AGATATTCGCACCGTGCAACCGCAAA---TTACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACC--T-ATCTGTTGTTTTTACATGATGTATAAGTTTAGAAT--------------------A-TAACTTT-ATTTCATTGAAATCGGTCATGGGTCATGGATTC
gi|19 : ATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTATACATCCGGTACTGACATGGATTGAATAATTTGTCATTGCATGATTAGCCAAAATTTAAACCTT-ACATTTTT-AAGGTTTGAAATTTTGTTT-GAATGTAT--CAAAAATATTACATAATAAACATGAAAACATTTC-AAACGATATACCCTTGATGGCAACAA-T-TAAATAGTTACTGTTTTA--------
gi|11 : tTTTTC----C-CGCGAAATCCAAGTTTTT-CATTTACGAAGGCTGTACACATCCGGTAGTGACACGGATT-AATATGTCGTCATTGCATGATTAGCCAAAATT----------------A-AAGGTTTGAAATTTGGTTT-GAACATAT--CAAAG-TATTACATAATAAACACGAAAACATGCT-AAACGTTATACCCTTGATGACAAC-AAT-TAAATAGTTATTGTTTAA--------TAA--------------TGTTCAACTAC----ACTTT------AGCGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGACAC--CTGATAACAAATGAAATTCATA----CA----GGATATTCGCACCGTGCAACCGGAAA---TAACTAGGCAAGGCA-------------TTTAGGAACGCAAAATATTA-ATTTCACAGGCAAAACACGACC--T-ATCTATTG---TTACACGATGTATATGTTTAGAATATTA-TTTT----------------CTTT-ATTTTATTGAAATCGGTGATGGATCATCGATTCAGTGAacacttataaaaaaaactatttgaatgtaattagtttattgaaaaa
gi|24 : TTTT----C-CGCGAAAGCTAAGATTTTTCATTTACGAAGGCTGCACACATCCGGTATTGACACGGAGTGAATATGTCGTCATTACATGCTTAGCCAAACATGAAACCTA-ACATTT
gi|10 : AGATATATATATCCGGTTCTTACACGGAGTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTT-ACAGTTTG-AAGGTTTGAAATTTGGTTA-GAATATAT--CATAAATATTACATAATAAACATGAAA-CGTGTC-AAATCATATACCCTTGGTGAAAAC-AAT-TAAATAGTTATTGTTTTG--------TAA--------------TGTTCAACTAT----CATTT-------------------GTGTACGGAAAGACCGAAA-CGTATTTCCCGCCATCTGTCAAACGGCATATCTGAGAACCAATCAAAATCATAATCGCA----AGATAATCGCACCGTACAACCGGAAG---TAACTAAGCAGAGCAAATATTGAGATCGTTTAGGAAAGTAAAATATAA-ATTTTATAGGTAAAACACGACT--T-ATCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTATGCTA-TAACTTT-ATTTCATT-AAATTGGTTACGGATCATGGATTCAGTAA
gi|8 : TAACCAAATTTCAAACCTTCAAATTGT--AAGGTTTAAATTTTGGTTA-
gi|1 : attttttcccccgcgaaatccaagtttcttcatttacgaaggctgtacacatccgatactgacacggattaaatatgtcgtcattgcatgatTAACCAAATTTCAAACCTT--CAATATGTAAGGTTTAAATTTTGGCTA-gaatatatcaaaaatattacaaaataaacatgaaaacatgtcaaacgatatacccttgatgaaaacaattaaatagttattattttataatgttcaactataatttaacgttatcgtgtgtgtacggaaaggtcgaaaacgtatttcccgccatctgtcaaacggcacctgataaccaatcaaaatcataaaagatattcgcaccgtgcaaccgcaaattactaggcaaggcaaatgttggactcgtttaggaacgtaaaatattaattttataggcaaaacacgacctatctgttgtttttacatgatgtataagtttagaatataactttatttcattgaaatcggtcatgggtcatggattc
gi|15 : tgtatttttccgcgaaatccaagtttctacatttacgaaggctgtacacatccggtactgacacggattgaatatgtggtcattacatgatAACATGAACTCATGTC-AAACGATATACCCTTGATGTTAAG-A-CGTAAATAGTTATTGTTTTA--------TAA--------------TGTTCAACTAT----AATTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCGATCAAAAATATA----CA----AGATATTCGCACCGTGCAACCGGAAG---TAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAACATATTGTTTTTTATAGGCAAAACACGACC--T-ATCTTTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTT-TAATTTT-ATTTTATTGAAATCGGTCATGGATAATgaatatatgaaaaatattacataattaacacaaaaacatgtcaaacgataaactcttgatgacaacaattagataattattgttttataaatattgttttataatgttcaactataattttaaaaaaatgataccgtttgtgtacggaaagaccgaaaacatatttcccaccgtctgtcaaacggcacctgataaccaatcaaaattcacaccatgcaaccaggaataactaggcaaggcaaatgttgaactcgtttaggaacataaaatattaattttataggcaaaacatgacctatctgttgtaattgcatgatgtatatgtttagaatattattttctacgtacgctataactttcattttattgaaataggtcacggattcagtga
gi|22 : TTCAACTAT----CATTT------AACATTATCGTGTGTGTACCTACAGACCGAAA-CATCTTTCCCGCCATTTGTAAAATGACAC--TTGATAACCAATCAAAATCATA----CAT---AG----TCGTAC--------CGGAAACTGCAACTAAGCAGAGCAAATGTTGGAATCGTTTCGAAATGAAAAATATTA-ATTGTAg
gi|18 : CTAT----CATTT------AACGCTATCATGTATGAACAGAAAGACCGAAAACGTATGTCCTGCCATCTTTCAATCGGCAC--CTAATAGCCAATCAAAACCATA----CA----AGATATTCGCACCGTGCAACCGGAAG---TAACTAGGCAGAGCAAATGAT-----------GGAACGTAAAATATTA-ATTTTATATGTAAAACACG-CC--TAATCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCTGTCATGGAACATGGATTCAGT
gi|20 : aacTCAAACGGCAC--CTGATAACCAATCATAATCATAAT--CATGTTAGATTTTCGCACTATGCAACCAGAAG---TAACTAGGCAAGGCAAATGTTGGCATCGTTTAGGAACGTAAAATATTA-ATTTTTTAGGCAAAACACGACT--T-ATCTGTTTTTATTACATGTTATATATGTTTAGAATATTA-TTTTCTACTTACACTT-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTG
gi|21 : C--CTGATAACTGATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAA---TAACTAGGCAAGACAAATGTTGGACTTGTTTAGGAACGTAAAATAATA-TTTTTATAGGCAAAATAAGACC--T-ATCTGTTGTTATTACATGATGTATATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGA
gi|25 : gGGCAAGGCAAATGATGGACTCGTTTAGGAACGTAAAATATTA-ACTTTATAGGCAAAACACGACC--T-ATCTGTTGTTGTTACATGATGTATATGTTTAGAATATTA-TTTTCTActc
gi|23 : ATAGGTAAAACACAACA--T-ATCTGTTGTTATTACAGGATGTATATGTTTAGATTATTA-TTTTCTACTAACACTG-TAACTTT-ATTTCATTGAAATCGGTCATATATCATGGAATCATTGA
gi|26 : TATATATGTTTAGAATATTA-TTTTCTACGTATGCTACTAACTTT-ATTTCATTGAAATC-------GATCATGGATTCAGTGActt
gi|27 : tgGTTTAGATTATTA-TTTTCTACTTGCGCTA-TAACTTT-ATTTCATTGAAATCGG-------TCATGGATTCAGTGAt
gi|28 : GTTTAGATTATCA-TTTTCTACTTACACTT-TAACTTT-ACTTCATTGAAATCAGTCATGGAT
gi|29 : cTACGCTT-TAACTTT--TTACATTGAAATCGG-------TCATGGATTCAGTGAtca
gi|30 : ctATCGGTGATGGATCATGGATTCAGTGAt
Alignments
lowQualScore : 11111111111111
lowQualScore : 5555 2 1 2 55 2 2 2 3 33333333333333 88888888 55555 666666 22 7777 4444 5 2 2 33 2 3 2 2 0
lowQualScore : .... . . . .. . . . . .............. ........ ..... ...... .. .... .... . . . .. . . . . .
lowQualScore : 0000 4 0 4 66 7 2 1 9 11111111111111 11111111 55555 111111 88 0000 2222 3 1 2 11 0 0 0 0 6
consensus : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----ATTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
Reference ( family-2177 ) : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACACGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATN----ATTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
gi|1 : TGTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGATTGAATATGTGGTCATTACATGATTAGCCAAAATTTAAACCTTACATATTGAAGGTTTGAAATTTGGTTA-GAATATAT--GAAAAATATTACATAATTAACACAAAAACATGTC-AAACGATAAACTCTTGATGACAACAATTAGATAATTATTGTTTTATAAATATTGTTTTA--------TAATGTTCAACTATA----ATTTTAAAAAAATGATACCGTTTGTGTACGGAAAGACCGAAAACATATTTCCCACCGTCTGTCAAACGGCAC--CTGATAACCAATCAAA--------------------ATTCACACCATGCAACCAGGAATAACTAGGCAAGGCAAATGTTGAACTCGTTTAGGAACATAAAATATTA-ATTTTATAGGCAAAACATGACCT-A--TCTGTTGTAATTGCATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAACTTTCATTTTATTGAAATAGG-------TCACGGATTCAGTGA
gi|10 : TATATATATCCGGTTCTTACACGGAGTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACAGTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CATAAATATTACATAATAAACATGAAA-CGTGTC-AAATCATATACCCTTGGTGAAAACAATTAAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----ATTT-------------------GTGTACGGAAAGACCGAAA-CGTATTTCCCGCCATCTGTCAAACGGCATATCTGAGAACCAATCAAAATCATAATCGCA----AGATAATCGCACCGTACAACCGGAAGTAACTAAGCAGAGCAAATATTGAGATCGTTTAGGAAAGTAAAATATAA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTATGCTA-TAACTTT-ATTTCATT-AAATTGGTTACGGATCATGGATTCAGTAA
gi|11 : agaTTTTC----C-CGCGAAATCCAAGTTTTT-CATTTACGAAGGCTGTACACATCCGGTAGTGACACGGATT-AATATGTCGTCATTGCATGATTAGCCAAAATT---------------AAAGGTTTGAAATTTGGTTT-GAACATAT--CAAAG-TATTACATAATAAACACGAAAACATGCT-AAACGTTATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TAA--------TAATGTTCAACTACA----CTTT------AGCGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGACAC--CTGATAACAAATGAAATTCATA----CA----GGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGGCA-------------TTTAGGAACGCAAAATATTA-ATTTCACAGGCAAAACACGACCT-A--TCTATTG---TTACACGATGTATATGTTTAGAATATTA-TTTT----------------CTTT-ATTTTATTGAAATCGGTGATGGATCATCGATTCAGTGA
gi|12 : TGCATTTTC----C-CCAAAAATCCAAGTTTCTACTTTTACGAAGGGTGTACACATCCGGTACTGACACGGAGTGAATATGTTGTCATTGTATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATATATCAGAAATATTACATAATAAACATGAAAACAAGTC-AAATTATATACTCTTGGTGAAAACAATTAAATGGTTATTATT--------------TCAGAAATTCATAATGTTCAACTATCTTAAATTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACGTATTTCCCACCAACTGTCAAATGGTAC--CTGATAACCAGTCAAAATCATA----CA----AGATATTCGCATCGTGCAACCGGAAATAACTAGGCACCGCAAATGTTAGAATTGTTTAGGAACGTAAAATATTA-ATCTTAT
gi|13 : GTATTTTT----C-CACGAAATCCAAATTTCTACATTTACACAGGCTGTACACATGAGGTACTGACATGGAGTATATGTGTCATCATTGCATGATTAGCCAATATTTAAACCTTGCATTTTAAAGGTTTGAAATTTTGTGA-GAATATAT--CAGAAATATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------------------------TTG--------TAATGTTCAGCTATC----ATTT------AACGTTATCTTGTGTGTATGGAAAGACCGAAA-CATATTTCCTGCCATCTGTCAAATGGTAC--CTGATAACCAATTAAAATCATA----AA----AGTTTTTTGCATAGTGCAACCGGATGTAACTAAGCAGAGCAAA--------TCATTAAGGAACATAAAATATTT-ATTTTATAGGTAAAACACAACTT-A--TCTGTTGTT
gi|14 : GTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAATGCTGTACACACTCGGTACTGACACGGATGGAACATGTCGTCATTGCATGATTAGCCACAATTTAAACCTTATATTTTTAAGGTTTGAAATTTGGTTA-GAATATAT--CGAAAATATTACATAATAAACATGAAAACATGTC-AAACAATATACCCTTGATGACAACAATTAGATAGTTACTGTT--------------TTA--------TAAAGTTCAACTATA----ATTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGTAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATA
gi|15 : AACATGAACTCATGTC-AAACGATATACCCTTGATGTTAAGACGTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----ATTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCGATCAAAAATATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAACATATTGTTTTTTATAGGCAAAACACGACCT-A--TCTTTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTT-TAATTTT-ATTTTATTGAAATCGGTCATGGATAATG
gi|16 : CATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAGGGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATAATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTT-GAATATAT--CAAAAATATTACATAATAAACATG-AATCATGTC-AAACGATATGCCTTTGATG---ACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----ATTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACATATTTC---CCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCACACCATGCAACCGGA
gi|17 : tTGCATTTTT----C-CATGAAATCCAAGTTTCTACATTT------------TACATCCGGTTCTGACACAGACTGAATATGTCAGCATTGCATGATTAGCCAAAATTTAAACCTTACATTATGAAGGTTTGAAGTTTTATTAGGAATATAT--AAAAAATATTACATAATCAACATGAAAACATGTA-AAATTATATATCCTTGATGAAAACAATTAAATAGTTATTGTT--------------TTA--------TAATGATCATCTATC----ATTT------AACGGTATCGTATGTGTACGGAAAGACCGAAAAAGTATTTCCCGCCATCTGTCAAACG
gi|18 : CTATC----ATTT------AACGCTATCATGTATGAACAGAAAGACCGAAAACGTATGTCCTGCCATCTTTCAATCGGCAC--CTAATAGCCAATCAAAACCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAGAGCAAATGAT-----------GGAACGTAAAATATTA-ATTTTATATGTAAAACACG-CCTAA--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCTGTCATGGAACATGGATTCAGT
gi|19 : aacATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTATACATCCGGTACTGACATGGATTGAATAATTTGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTTAAGGTTTGAAATTTTGTTT-GAATGTAT--CAAAAATATTACATAATAAACATGAAAACATTTC-AAACGATATACCCTTGATGGCAACAATTAAATAGTTACTGTT--------------TTA--------
gi|2 : tTGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAAGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAATGATATACCCGTGATGACAATA-TTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----ATTT------AACGTTATTGTGTGTGTACGGAAAGGCCAAAAACGTATTTCCCACCATCTGTCAAATGGCAC--CTGATAACCAATCAAAATCATA----CA----AGACATTTGCACTGTGCAATCGGAAATAACTAGGCAAGGCAAATGTTGGACTTGTTTAGGAACGTAAAATATTA-ATTTTATAAGCAAAACACGACCT-T--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTATGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTGATGGATCATAGATTCAGTGAacacttataaaaaaaactatttgaatgtaattagtttattgaaaaa
gi|20 : TCAAACGGCAC--CTGATAACCAATCATAATCATAAT--CATGTTAGATTTTCGCACTATGCAACCAGAAGTAACTAGGCAAGGCAAATGTTGGCATCGTTTAGGAACGTAAAATATTA-ATTTTTTAGGCAAAACACGACTT-A--TCTGTTTTTATTACATGTTATATATGTTTAGAATATTA-TTTTCTACTTACACTT-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTG
gi|21 : C--CTGATAACTGATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGACAAATGTTGGACTTGTTTAGGAACGTAAAATAATA-TTTTTATAGGCAAAATAAGACCT-A--TCTGTTGTTATTACATGATGTATATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGA
gi|22 : gTTCAACTATC----ATTT------AACATTATCGTGTGTGTACCTACAGACCGAAA-CATCTTTCCCGCCATTTGTAAAATGACAC--TTGATAACCAATCAAAATCATA----C-------ATAGTCGTACCG-GAAACT----GCAACTAAGCAGAGCAAATGTTGGAATCGTTTCGAAATGAAAAATATTA-ATTGTActc
gi|23 : ATAGGTAAAACACAACAT-A--TCTGTTGTTATTACAGGATGTATATGTTTAGATTATTA-TTTTCTACTAACACTG-TAACTTT-ATTTCATTGAAATCGGTCATATATCATGGAATCATTGA
gi|24 : TTTT----C-CGCGAAAGCTAAGATTTTTCATTTACGAAGGCTGCACACATCCGGTATTGACACGGAGTGAATATGTCGTCATTACATGCTTAGCCAAACATGAAACCTAACATTTctt
gi|25 : GGCAAGGCAAATGATGGACTCGTTTAGGAACGTAAAATATTA-ACTTTATAGGCAAAACACGACCT-A--TCTGTTGTTGTTACATGATGTATATGTTTAGAATATTA-TTTTCTA
gi|26 : TATATATGTTTAGAATATTA-TTTTCTACGTATGCTACTAACTTT-ATTTCATTGAAATC-------GATCATGGATTCAGTGA
gi|27 : tgGTTTAGATTATTA-TTTTCTACTTGCGCTA-TAACTTT-ATTTCATTGAAATCGG-------TCATGGATTCAGTGAt
gi|28 : GTTTAGATTATCA-TTTTCTACTTACACTT-TAACTTT-ACTTCATTGAAATCAGTCATGGAT
gi|29 : cCTTACGCTT-TAACTTT--TTACATTGAAATCGG-------TCATGGATTCAGTGAtca
gi|3 : TGCATTTTT----T-GGCGAAATCCAAGTTTCTACATTTACGAAGGCTATTCATATCCGGTATTGACATGGATTGAATATGTCGTCATTGTATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTAGAAATTTGGTTA-GAATATAT--CAAAACTATAACATAATAAACATGAAAACATTTC-AAACAATATAACCTTGATGACAAAATTTAAATAGTAATTGTT--------------TTA--------TAATGTTCAACTATA----ATTT------AACAATATGGTGTGTGTACAGAAAGACCGAAAACGTATTTCCCACCATCTGTCAAACAGCAC--CTGATAACAAATCAAAACTATA----CA----AGATATTCGCATCATGCAACCAGAAGCAACTAAGCAAGGCAACTGATGGATTCGTTTAAGATCA-AAAATATTC-ATTTTATAGGCAAAACATGACCC-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTATGCTA-TAACTTT-ATTTCATCGAAATCGGTCATGGATC-TAGATTCAGt
gi|30 : ATCGGTGATGGATCATGGATTCAGTGAc
gi|4 : CATTTTC----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTATTGAAACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--AGAAAATATTACAAAATAAACATGAAAACATGTCAAAACGATATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TTA--------TAATATTCGATTATA----ATTT------AATGTTATCGTGTGTGTACGTAAAGATCGAAAACGTA-TTCCCGCCATCTGTCATACGGTAC--CTGATAACCAATAAAAATCGTA----CA----AGATATTTGCACCGTGCATCCGGAAATAACTTGGCAAGGCAAATGTTGGACTCG-TTAGTAACGTAAAATA-TG-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAGCTTT-ATTTCATTGGAATCGGTCAATGATAATCGATTCAGTGAttt
gi|5 : TGCATTTTT----TACGCGAAATCTAAGATTCTACATTTACAAAGGCTGTACACATTCGGTACTGATACGGAGTTAATATGTCGTCATTGAATGATAAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAGAAAGATTACATAATAAACACGAAAACATGTC-AAATTATATACCCTTGGCGA-AATAATTGAATAGTTATTGTT--------------TCA--------TAATGTTCAACTATC----ATTT------AACGTTATCGTGTGCGTACGGAAAGGCCAAAAACGTATTTCCCGCCATCTGTCAACCGGCAC--TTGATAACCAATCAAAACCATA----CA----AGATATTCGCAACGTGAAACCGGAAGTAACTTGGCAACGCAAATGTTTGAATAGTTTAGGAACGTAAAATATTA-ATTTTATAGGTAAAACAAGACTT-A--TCTGTTGTTATTACATGATGTTAATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTAACATCGGCCATGGATCATGAAT
gi|6 : TGCATTTTT----C-CGCGATATCCAAATTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGAGTAAATATGTCGTCATGG-ATGATAAGCCAAAATTTAAACCTAACGGTTTGAAGGTTTGAAATTTGGTTA-GACTATAT--CAGAAATTTTACATAATACACAAGAAAACATGTG-AAATTATATACCCTTGCTGAAAACAATTGAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----ATTT------ATTGTTATTGTGTGTGCACGACAAAACCG-GAACGTATTACCCGCTATCTGTCAAACGGCAT--CTGATAACAAATCAAAATCTAA----CT----GGATATTCGCACCGTGCAACCGGAAGTTTCTTAGCAAAGCAAGTGTTGAACTCGTTTAACAACGTAAAATATTA-TTTTTATAGGTAAAACACGACTT-ATCTCTGTTGTTATTACATGATGTATATGTTTGGAATATTA-TTTTCTACTTACGCTA-TAGCTTT-ATTACATTGAAATCGGCCATGGATCAT
gi|7 : TGCATTTTT----C-CGCGAATTTCAAGTTTCTACATTTACGAAGGCTGTACAAATCCGGTACTAACACGGAGTGAATATGTCCTAGTTGCATGATATGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAAT--------------AT--GAGAAGTATTACATAATAAACATGAAAACATTAC-AAAATATATACCCTTGGTAAAAACAATTAAATGGTTCTTGTT--------------TTA--------TAATGTTCAACTATC----ATTT------AAAGTTAGCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCTCGCCATCTGTCAAATGGCAC--CTGATAACCATTCAAAATCAAA----CA----AGTTATTTGTACCGTGCAACCGGAAGTAACCAGGCAGAGCAAATGTTGGA-TCATTTAGGAATGTAAAATATTA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTACCTACATGATGTATATGTTCAGAATATTATTTTTCTACTTGCGCTT-TAACCTT-ATTTTATTGAAATCGGTCATGGA
gi|8 : ATTTTTTCCCC-CGCGAAATCCAAGTTTCTTCATTTACGAAGGCTGTACACATCCGATACTGACACGGATTAAATATGTCGTCATTGCATGATTAACCAAAATTTAAACCTTACAATTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACAAAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGAAAACAATTAAATAGTTATTATT--------------TTA--------TAATGTTCAACTATA----ATTT------AACGTTATCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----AA----AGATATTCGCACCGTGCAACCGCAAATTACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTTTTACATGATGTATAAGTTTAGAA--------------------TA-TAACTTT-ATTTCATTGAAATCGGTCATGGGTCATGGATTCcgcagt
gi|9 : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACAGTTACGAAGGATGTACACATCCGGTACTAACAAGGACTGAACATGTCGT-ATTACCTGATTTGCCAAAATTTAAACTTTACATTTTGAAAGTTTGAAATTTGGTTA-GAATATATA-AAAAAATATTACATATTAAACACGAAATCATGTC-TAATTATATACCCTTGATGAAAACAATTAAATATTTATTGTT--------------TTA--------TCATGTTGAATTATC----ATTT------AAGGCCATCGTGTGTGTACGGAAAGAAAGAAAA-GTATTTCCCGCCATCTGTCAAACGG-----CT------------------------CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGAATCGTTTAGGAACGTAAAATATTA-ATTTTATGGGCAAAACACGACCT-A--TCT-TTGTTATTACATGATGTGTATGTTTGGAATACTA-TTTTCTACTTACGATA-TAACTTT-ATTTCATTGGACTCGATCATGGATCATGGATTCAGT
Alignments
lowQualScore : 11111111111111
lowQualScore : 5555 2 1 2 55 2 2 3 33333333333333 88888888 55555 2 666666 22 7777 4444 5 2 2 33 2 3 2 2 0
lowQualScore : .... . . . .. . . . .............. ........ ..... . ...... .. .... .... . . . .. . . . . .
lowQualScore : 0000 4 0 4 66 2 1 9 11111111111111 11111111 00000 1 111111 88 0000 2222 3 1 2 11 0 0 0 0 6
consensus : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
Reference ( family-2177 ) : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
gi|1 : TGTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGATTGAATATGTGGTCATTACATGATTAGCCAAAATTTAAACCTTACATATTGAAGGTTTGAAATTTGGTTA-GAATATAT--GAAAAATATTACATAATTAACACAAAAACATGTC-AAACGATAAACTCTTGATGACAACAATTAGATAATTATTGTTTTATAAATATTGTTTTA--------TAATGTTCAACTATA----A-TTTTAAAAAAATGATACCGTTTGTGTACGGAAAGACCGAAAACATATTTCCCACCGTCTGTCAAACGGCAC--CTGATAACCAATCAAA--------------------ATTCACACCATGCAACCAGGAATAACTAGGCAAGGCAAATGTTGAACTCGTTTAGGAACATAAAATATTA-ATTTTATAGGCAAAACATGACCT-A--TCTGTTGTAATTGCATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAACTTTCATTTTATTGAAATAGG-------TCACGGATTCAGTGA
gi|10 : TATATATATCCGGTTCTTACACGGAGTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACAGTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CATAAATATTACATAATAAACATGAAA-CGTGTC-AAATCATATACCCTTGGTGAAAACAATTAAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----A-TTT-------------------GTGTACGGAAAGACCGAAA-CGTATTTCCCGCCATCTGTCAAACGGCATATCTGAGAACCAATCAAAATCATAATCGCA----AGATAATCGCACCGTACAACCGGAAGTAACTAAGCAGAGCAAATATTGAGATCGTTTAGGAAAGTAAAATATAA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTATGCTA-TAACTTT-ATTTCATT-AAATTGGTTACGGATCATGGATTCAGTAA
gi|11 : agaTTTTC----C-CGCGAAATCCAAGTTTTT-CATTTACGAAGGCTGTACACATCCGGTAGTGACACGGATT-AATATGTCGTCATTGCATGATTAGCCAAAATT---------------AAAGGTTTGAAATTTGGTTT-GAACATAT--CAAAG-TATTACATAATAAACACGAAAACATGCT-AAACGTTATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TAA--------TAATGTTCAACTA-C----ACTTT------AGCGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGACAC--CTGATAACAAATGAAATTCATA----CA----GGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGGCA-------------TTTAGGAACGCAAAATATTA-ATTTCACAGGCAAAACACGACCT-A--TCTATTG---TTACACGATGTATATGTTTAGAATATTA-TTTT----------------CTTT-ATTTTATTGAAATCGGTGATGGATCATCGATTCAGTGA
gi|12 : TGCATTTTC----C-CCAAAAATCCAAGTTTCTACTTTTACGAAGGGTGTACACATCCGGTACTGACACGGAGTGAATATGTTGTCATTGTATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATATATCAGAAATATTACATAATAAACATGAAAACAAGTC-AAATTATATACTCTTGGTGAAAACAATTAAATGGTTATTATT--------------TCAGAAATTCATAATGTTCAACTATCTTAAA-TTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACGTATTTCCCACCAACTGTCAAATGGTAC--CTGATAACCAGTCAAAATCATA----CA----AGATATTCGCATCGTGCAACCGGAAATAACTAGGCACCGCAAATGTTAGAATTGTTTAGGAACGTAAAATATTA-ATCTTAT
gi|13 : GTATTTTT----C-CACGAAATCCAAATTTCTACATTTACACAGGCTGTACACATGAGGTACTGACATGGAGTATATGTGTCATCATTGCATGATTAGCCAATATTTAAACCTTGCATTTTAAAGGTTTGAAATTTTGTGA-GAATATAT--CAGAAATATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------------------------TTG--------TAATGTTCAGCTATC----A-TTT------AACGTTATCTTGTGTGTATGGAAAGACCGAAA-CATATTTCCTGCCATCTGTCAAATGGTAC--CTGATAACCAATTAAAATCATA----AA----AGTTTTTTGCATAGTGCAACCGGATGTAACTAAGCAGAGCAAA--------TCATTAAGGAACATAAAATATTT-ATTTTATAGGTAAAACACAACTT-A--TCTGTTGTT
gi|14 : GTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAATGCTGTACACACTCGGTACTGACACGGATGGAACATGTCGTCATTGCATGATTAGCCACAATTTAAACCTTATATTTTTAAGGTTTGAAATTTGGTTA-GAATATAT--CGAAAATATTACATAATAAACATGAAAACATGTC-AAACAATATACCCTTGATGACAACAATTAGATAGTTACTGTT--------------TTA--------TAAAGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGTAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATA
gi|15 : AACATGAACTCATGTC-AAACGATATACCCTTGATGTTAAGACGTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCGATCAAAAATATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAACATATTGTTTTTTATAGGCAAAACACGACCT-A--TCTTTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTT-TAATTTT-ATTTTATTGAAATCGGTCATGGATAATG
gi|16 : CATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAGGGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATAATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTT-GAATATAT--CAAAAATATTACATAATAAACATG-AATCATGTC-AAACGATATGCCTTTGATG---ACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACATATTTC---CCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCACACCATGCAACCGGA
gi|17 : tTGCATTTTT----C-CATGAAATCCAAGTTTCTACATTT------------TACATCCGGTTCTGACACAGACTGAATATGTCAGCATTGCATGATTAGCCAAAATTTAAACCTTACATTATGAAGGTTTGAAGTTTTATTAGGAATATAT--AAAAAATATTACATAATCAACATGAAAACATGTA-AAATTATATATCCTTGATGAAAACAATTAAATAGTTATTGTT--------------TTA--------TAATGATCATCTATC----A-TTT------AACGGTATCGTATGTGTACGGAAAGACCGAAAAAGTATTTCCCGCCATCTGTCAAACG
gi|18 : CTATC----A-TTT------AACGCTATCATGTATGAACAGAAAGACCGAAAACGTATGTCCTGCCATCTTTCAATCGGCAC--CTAATAGCCAATCAAAACCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAGAGCAAATGAT-----------GGAACGTAAAATATTA-ATTTTATATGTAAAACACG-CCTAA--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCTGTCATGGAACATGGATTCAGT
gi|19 : aacATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTATACATCCGGTACTGACATGGATTGAATAATTTGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTTAAGGTTTGAAATTTTGTTT-GAATGTAT--CAAAAATATTACATAATAAACATGAAAACATTTC-AAACGATATACCCTTGATGGCAACAATTAAATAGTTACTGTT--------------TTA--------
gi|2 : tTGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAAGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAATGATATACCCGTGATGACAATA-TTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATTGTGTGTGTACGGAAAGGCCAAAAACGTATTTCCCACCATCTGTCAAATGGCAC--CTGATAACCAATCAAAATCATA----CA----AGACATTTGCACTGTGCAATCGGAAATAACTAGGCAAGGCAAATGTTGGACTTGTTTAGGAACGTAAAATATTA-ATTTTATAAGCAAAACACGACCT-T--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTATGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTGATGGATCATAGATTCAGTGAacacttataaaaaaaactatttgaatgtaattagtttattgaaaaa
gi|20 : TCAAACGGCAC--CTGATAACCAATCATAATCATAAT--CATGTTAGATTTTCGCACTATGCAACCAGAAGTAACTAGGCAAGGCAAATGTTGGCATCGTTTAGGAACGTAAAATATTA-ATTTTTTAGGCAAAACACGACTT-A--TCTGTTTTTATTACATGTTATATATGTTTAGAATATTA-TTTTCTACTTACACTT-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTG
gi|21 : C--CTGATAACTGATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGACAAATGTTGGACTTGTTTAGGAACGTAAAATAATA-TTTTTATAGGCAAAATAAGACCT-A--TCTGTTGTTATTACATGATGTATATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGA
gi|22 : gTTCAACTATC----A-TTT------AACATTATCGTGTGTGTACCTACAGACCGAAA-CATCTTTCCCGCCATTTGTAAAATGACAC--TTGATAACCAATCAAAATCATA----C-------ATAGTCGTACCG-GAAACT----GCAACTAAGCAGAGCAAATGTTGGAATCGTTTCGAAATGAAAAATATTA-ATTGTActc
gi|23 : ATAGGTAAAACACAACAT-A--TCTGTTGTTATTACAGGATGTATATGTTTAGATTATTA-TTTTCTACTAACACTG-TAACTTT-ATTTCATTGAAATCGGTCATATATCATGGAATCATTGA
gi|24 : TTTT----C-CGCGAAAGCTAAGATTTTTCATTTACGAAGGCTGCACACATCCGGTATTGACACGGAGTGAATATGTCGTCATTACATGCTTAGCCAAACATGAAACCTAACATTTctt
gi|25 : GGCAAGGCAAATGATGGACTCGTTTAGGAACGTAAAATATTA-ACTTTATAGGCAAAACACGACCT-A--TCTGTTGTTGTTACATGATGTATATGTTTAGAATATTA-TTTTCTA
gi|26 : TATATATGTTTAGAATATTA-TTTTCTACGTATGCTACTAACTTT-ATTTCATTGAAATC-------GATCATGGATTCAGTGA
gi|27 : tgGTTTAGATTATTA-TTTTCTACTTGCGCTA-TAACTTT-ATTTCATTGAAATCGG-------TCATGGATTCAGTGAt
gi|28 : GTTTAGATTATCA-TTTTCTACTTACACTT-TAACTTT-ACTTCATTGAAATCAGTCATGGAT
gi|29 : cCTTACGCTT-TAACTTT--TTACATTGAAATCGG-------TCATGGATTCAGTGAtca
gi|3 : TGCATTTTT----T-GGCGAAATCCAAGTTTCTACATTTACGAAGGCTATTCATATCCGGTATTGACATGGATTGAATATGTCGTCATTGTATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTAGAAATTTGGTTA-GAATATAT--CAAAACTATAACATAATAAACATGAAAACATTTC-AAACAATATAACCTTGATGACAAAATTTAAATAGTAATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACAATATGGTGTGTGTACAGAAAGACCGAAAACGTATTTCCCACCATCTGTCAAACAGCAC--CTGATAACAAATCAAAACTATA----CA----AGATATTCGCATCATGCAACCAGAAGCAACTAAGCAAGGCAACTGATGGATTCGTTTAAGATCA-AAAATATTC-ATTTTATAGGCAAAACATGACCC-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTATGCTA-TAACTTT-ATTTCATCGAAATCGGTCATGGATC-TAGATTCAGt
gi|30 : ATCGGTGATGGATCATGGATTCAGTGAc
gi|4 : CATTTTC----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTATTGAAACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--AGAAAATATTACAAAATAAACATGAAAACATGTCAAAACGATATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TTA--------TAATATTCGATTATA----A-TTT------AATGTTATCGTGTGTGTACGTAAAGATCGAAAACGTA-TTCCCGCCATCTGTCATACGGTAC--CTGATAACCAATAAAAATCGTA----CA----AGATATTTGCACCGTGCATCCGGAAATAACTTGGCAAGGCAAATGTTGGACTCG-TTAGTAACGTAAAATA-TG-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAGCTTT-ATTTCATTGGAATCGGTCAATGATAATCGATTCAGTGAttt
gi|5 : TGCATTTTT----TACGCGAAATCTAAGATTCTACATTTACAAAGGCTGTACACATTCGGTACTGATACGGAGTTAATATGTCGTCATTGAATGATAAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAGAAAGATTACATAATAAACACGAAAACATGTC-AAATTATATACCCTTGGCGA-AATAATTGAATAGTTATTGTT--------------TCA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGCGTACGGAAAGGCCAAAAACGTATTTCCCGCCATCTGTCAACCGGCAC--TTGATAACCAATCAAAACCATA----CA----AGATATTCGCAACGTGAAACCGGAAGTAACTTGGCAACGCAAATGTTTGAATAGTTTAGGAACGTAAAATATTA-ATTTTATAGGTAAAACAAGACTT-A--TCTGTTGTTATTACATGATGTTAATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTAACATCGGCCATGGATCATGAAT
gi|6 : TGCATTTTT----C-CGCGATATCCAAATTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGAGTAAATATGTCGTCATGG-ATGATAAGCCAAAATTTAAACCTAACGGTTTGAAGGTTTGAAATTTGGTTA-GACTATAT--CAGAAATTTTACATAATACACAAGAAAACATGTG-AAATTATATACCCTTGCTGAAAACAATTGAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----A-TTT------ATTGTTATTGTGTGTGCACGACAAAACCG-GAACGTATTACCCGCTATCTGTCAAACGGCAT--CTGATAACAAATCAAAATCTAA----CT----GGATATTCGCACCGTGCAACCGGAAGTTTCTTAGCAAAGCAAGTGTTGAACTCGTTTAACAACGTAAAATATTA-TTTTTATAGGTAAAACACGACTT-ATCTCTGTTGTTATTACATGATGTATATGTTTGGAATATTA-TTTTCTACTTACGCTA-TAGCTTT-ATTACATTGAAATCGGCCATGGATCAT
gi|7 : TGCATTTTT----C-CGCGAATTTCAAGTTTCTACATTTACGAAGGCTGTACAAATCCGGTACTAACACGGAGTGAATATGTCCTAGTTGCATGATATGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAAT--------------AT--GAGAAGTATTACATAATAAACATGAAAACATTAC-AAAATATATACCCTTGGTAAAAACAATTAAATGGTTCTTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AAAGTTAGCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCTCGCCATCTGTCAAATGGCAC--CTGATAACCATTCAAAATCAAA----CA----AGTTATTTGTACCGTGCAACCGGAAGTAACCAGGCAGAGCAAATGTTGGA-TCATTTAGGAATGTAAAATATTA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTACCTACATGATGTATATGTTCAGAATATTATTTTTCTACTTGCGCTT-TAACCTT-ATTTTATTGAAATCGGTCATGGA
gi|8 : ATTTTTTCCCC-CGCGAAATCCAAGTTTCTTCATTTACGAAGGCTGTACACATCCGATACTGACACGGATTAAATATGTCGTCATTGCATGATTAACCAAAATTTAAACCTTACAATTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACAAAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGAAAACAATTAAATAGTTATTATT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----AA----AGATATTCGCACCGTGCAACCGCAAATTACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTTTTACATGATGTATAAGTTTAGAA--------------------TA-TAACTTT-ATTTCATTGAAATCGGTCATGGGTCATGGATTCcgcagt
gi|9 : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACAGTTACGAAGGATGTACACATCCGGTACTAACAAGGACTGAACATGTCGT-ATTACCTGATTTGCCAAAATTTAAACTTTACATTTTGAAAGTTTGAAATTTGGTTA-GAATATATA-AAAAAATATTACATATTAAACACGAAATCATGTC-TAATTATATACCCTTGATGAAAACAATTAAATATTTATTGTT--------------TTA--------TCATGTTGAATTATC----A-TTT------AAGGCCATCGTGTGTGTACGGAAAGAAAGAAAA-GTATTTCCCGCCATCTGTCAAACGG-----CT------------------------CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGAATCGTTTAGGAACGTAAAATATTA-ATTTTATGGGCAAAACACGACCT-A--TCT-TTGTTATTACATGATGTGTATGTTTGGAATACTA-TTTTCTACTTACGATA-TAACTTT-ATTTCATTGGACTCGATCATGGATCATGGATTCAGT
Alignments
lowQualScore : 11111111111111
lowQualScore : 5555 2 1 2 55 2 2 3 33333333333333 88888888 55555 2 666666 22 7777 4444 5 2 2 33 2 3 2 2 0
lowQualScore : .... . . . .. . . . .............. ........ ..... . ...... .. .... .... . . . .. . . . . .
lowQualScore : 0000 4 0 4 66 2 1 9 11111111111111 11111111 00000 1 111111 88 0000 2222 3 1 2 11 0 0 0 0 6
consensus : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
Reference ( family-2177 ) : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
gi|1 : TGTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGATTGAATATGTGGTCATTACATGATTAGCCAAAATTTAAACCTTACATATTGAAGGTTTGAAATTTGGTTA-GAATATAT--GAAAAATATTACATAATTAACACAAAAACATGTC-AAACGATAAACTCTTGATGACAACAATTAGATAATTATTGTTTTATAAATATTGTTTTA--------TAATGTTCAACTATA----A-TTTTAAAAAAATGATACCGTTTGTGTACGGAAAGACCGAAAACATATTTCCCACCGTCTGTCAAACGGCAC--CTGATAACCAATCAAA--------------------ATTCACACCATGCAACCAGGAATAACTAGGCAAGGCAAATGTTGAACTCGTTTAGGAACATAAAATATTA-ATTTTATAGGCAAAACATGACCT-A--TCTGTTGTAATTGCATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAACTTTCATTTTATTGAAATAGG-------TCACGGATTCAGTGA
gi|10 : TATATATATCCGGTTCTTACACGGAGTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACAGTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CATAAATATTACATAATAAACATGAAA-CGTGTC-AAATCATATACCCTTGGTGAAAACAATTAAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----A-TTT-------------------GTGTACGGAAAGACCGAAA-CGTATTTCCCGCCATCTGTCAAACGGCATATCTGAGAACCAATCAAAATCATAATCGCA----AGATAATCGCACCGTACAACCGGAAGTAACTAAGCAGAGCAAATATTGAGATCGTTTAGGAAAGTAAAATATAA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTATGCTA-TAACTTT-ATTTCATT-AAATTGGTTACGGATCATGGATTCAGTAA
gi|11 : agaTTTTC----C-CGCGAAATCCAAGTTTTT-CATTTACGAAGGCTGTACACATCCGGTAGTGACACGGATT-AATATGTCGTCATTGCATGATTAGCCAAAATT---------------AAAGGTTTGAAATTTGGTTT-GAACATAT--CAAAG-TATTACATAATAAACACGAAAACATGCT-AAACGTTATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TAA--------TAATGTTCAACTA-C----ACTTT------AGCGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGACAC--CTGATAACAAATGAAATTCATA----CA----GGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGGCA-------------TTTAGGAACGCAAAATATTA-ATTTCACAGGCAAAACACGACCT-A--TCTATTG---TTACACGATGTATATGTTTAGAATATTA-TTTT----------------CTTT-ATTTTATTGAAATCGGTGATGGATCATCGATTCAGTGA
gi|12 : TGCATTTTC----C-CCAAAAATCCAAGTTTCTACTTTTACGAAGGGTGTACACATCCGGTACTGACACGGAGTGAATATGTTGTCATTGTATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATATATCAGAAATATTACATAATAAACATGAAAACAAGTC-AAATTATATACTCTTGGTGAAAACAATTAAATGGTTATTATT--------------TCAGAAATTCATAATGTTCAACTATCTTAAA-TTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACGTATTTCCCACCAACTGTCAAATGGTAC--CTGATAACCAGTCAAAATCATA----CA----AGATATTCGCATCGTGCAACCGGAAATAACTAGGCACCGCAAATGTTAGAATTGTTTAGGAACGTAAAATATTA-ATCTTAT
gi|13 : GTATTTTT----C-CACGAAATCCAAATTTCTACATTTACACAGGCTGTACACATGAGGTACTGACATGGAGTATATGTGTCATCATTGCATGATTAGCCAATATTTAAACCTTGCATTTTAAAGGTTTGAAATTTTGTGA-GAATATAT--CAGAAATATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------------------------TTG--------TAATGTTCAGCTATC----A-TTT------AACGTTATCTTGTGTGTATGGAAAGACCGAAA-CATATTTCCTGCCATCTGTCAAATGGTAC--CTGATAACCAATTAAAATCATA----AA----AGTTTTTTGCATAGTGCAACCGGATGTAACTAAGCAGAGCAAA--------TCATTAAGGAACATAAAATATTT-ATTTTATAGGTAAAACACAACTT-A--TCTGTTGTT
gi|14 : GTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAATGCTGTACACACTCGGTACTGACACGGATGGAACATGTCGTCATTGCATGATTAGCCACAATTTAAACCTTATATTTTTAAGGTTTGAAATTTGGTTA-GAATATAT--CGAAAATATTACATAATAAACATGAAAACATGTC-AAACAATATACCCTTGATGACAACAATTAGATAGTTACTGTT--------------TTA--------TAAAGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGTAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATA
gi|15 : AACATGAACTCATGTC-AAACGATATACCCTTGATGTTAAGACGTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCGATCAAAAATATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAACATATTGTTTTTTATAGGCAAAACACGACCT-A--TCTTTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTT-TAATTTT-ATTTTATTGAAATCGGTCATGGATAATG
gi|16 : CATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAGGGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATAATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTT-GAATATAT--CAAAAATATTACATAATAAACATG-AATCATGTC-AAACGATATGCCTTTGATG---ACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACATATTTC---CCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCACACCATGCAACCGGA
gi|17 : tTGCATTTTT----C-CATGAAATCCAAGTTTCTACATTT------------TACATCCGGTTCTGACACAGACTGAATATGTCAGCATTGCATGATTAGCCAAAATTTAAACCTTACATTATGAAGGTTTGAAGTTTTATTAGGAATATAT--AAAAAATATTACATAATCAACATGAAAACATGTA-AAATTATATATCCTTGATGAAAACAATTAAATAGTTATTGTT--------------TTA--------TAATGATCATCTATC----A-TTT------AACGGTATCGTATGTGTACGGAAAGACCGAAAAAGTATTTCCCGCCATCTGTCAAACG
gi|18 : CTATC----A-TTT------AACGCTATCATGTATGAACAGAAAGACCGAAAACGTATGTCCTGCCATCTTTCAATCGGCAC--CTAATAGCCAATCAAAACCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAGAGCAAATGAT-----------GGAACGTAAAATATTA-ATTTTATATGTAAAACACG-CCTAA--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCTGTCATGGAACATGGATTCAGT
gi|19 : aacATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTATACATCCGGTACTGACATGGATTGAATAATTTGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTTAAGGTTTGAAATTTTGTTT-GAATGTAT--CAAAAATATTACATAATAAACATGAAAACATTTC-AAACGATATACCCTTGATGGCAACAATTAAATAGTTACTGTT--------------TTA--------
gi|2 : tTGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAAGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAATGATATACCCGTGATGACAATA-TTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATTGTGTGTGTACGGAAAGGCCAAAAACGTATTTCCCACCATCTGTCAAATGGCAC--CTGATAACCAATCAAAATCATA----CA----AGACATTTGCACTGTGCAATCGGAAATAACTAGGCAAGGCAAATGTTGGACTTGTTTAGGAACGTAAAATATTA-ATTTTATAAGCAAAACACGACCT-T--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTATGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTGATGGATCATAGATTCAGTGAacacttataaaaaaaactatttgaatgtaattagtttattgaaaaa
gi|20 : TCAAACGGCAC--CTGATAACCAATCATAATCATAAT--CATGTTAGATTTTCGCACTATGCAACCAGAAGTAACTAGGCAAGGCAAATGTTGGCATCGTTTAGGAACGTAAAATATTA-ATTTTTTAGGCAAAACACGACTT-A--TCTGTTTTTATTACATGTTATATATGTTTAGAATATTA-TTTTCTACTTACACTT-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTG
gi|21 : C--CTGATAACTGATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGACAAATGTTGGACTTGTTTAGGAACGTAAAATAATA-TTTTTATAGGCAAAATAAGACCT-A--TCTGTTGTTATTACATGATGTATATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGA
gi|22 : gTTCAACTATC----A-TTT------AACATTATCGTGTGTGTACCTACAGACCGAAA-CATCTTTCCCGCCATTTGTAAAATGACAC--TTGATAACCAATCAAAATCATA----C-------ATAGTCGTACCG-GAAACT----GCAACTAAGCAGAGCAAATGTTGGAATCGTTTCGAAATGAAAAATATTA-ATTGTActc
gi|23 : ATAGGTAAAACACAACAT-A--TCTGTTGTTATTACAGGATGTATATGTTTAGATTATTA-TTTTCTACTAACACTG-TAACTTT-ATTTCATTGAAATCGGTCATATATCATGGAATCATTGA
gi|24 : TTTT----C-CGCGAAAGCTAAGATTTTTCATTTACGAAGGCTGCACACATCCGGTATTGACACGGAGTGAATATGTCGTCATTACATGCTTAGCCAAACATGAAACCTAACATTTctt
gi|25 : GGCAAGGCAAATGATGGACTCGTTTAGGAACGTAAAATATTA-ACTTTATAGGCAAAACACGACCT-A--TCTGTTGTTGTTACATGATGTATATGTTTAGAATATTA-TTTTCTA
gi|26 : TATATATGTTTAGAATATTA-TTTTCTACGTATGCTACTAACTTT-ATTTCATTGAAATC-------GATCATGGATTCAGTGA
gi|27 : tgGTTTAGATTATTA-TTTTCTACTTGCGCTA-TAACTTT-ATTTCATTGAAATCGG-------TCATGGATTCAGTGAt
gi|28 : GTTTAGATTATCA-TTTTCTACTTACACTT-TAACTTT-ACTTCATTGAAATCAGTCATGGAT
gi|29 : cCTTACGCTT-TAACTTT--TTACATTGAAATCGG-------TCATGGATTCAGTGAtca
gi|3 : TGCATTTTT----T-GGCGAAATCCAAGTTTCTACATTTACGAAGGCTATTCATATCCGGTATTGACATGGATTGAATATGTCGTCATTGTATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTAGAAATTTGGTTA-GAATATAT--CAAAACTATAACATAATAAACATGAAAACATTTC-AAACAATATAACCTTGATGACAAAATTTAAATAGTAATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACAATATGGTGTGTGTACAGAAAGACCGAAAACGTATTTCCCACCATCTGTCAAACAGCAC--CTGATAACAAATCAAAACTATA----CA----AGATATTCGCATCATGCAACCAGAAGCAACTAAGCAAGGCAACTGATGGATTCGTTTAAGATCA-AAAATATTC-ATTTTATAGGCAAAACATGACCC-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTATGCTA-TAACTTT-ATTTCATCGAAATCGGTCATGGATC-TAGATTCAGt
gi|30 : ATCGGTGATGGATCATGGATTCAGTGAc
gi|4 : CATTTTC----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTATTGAAACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--AGAAAATATTACAAAATAAACATGAAAACATGTCAAAACGATATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TTA--------TAATATTCGATTATA----A-TTT------AATGTTATCGTGTGTGTACGTAAAGATCGAAAACGTA-TTCCCGCCATCTGTCATACGGTAC--CTGATAACCAATAAAAATCGTA----CA----AGATATTTGCACCGTGCATCCGGAAATAACTTGGCAAGGCAAATGTTGGACTCG-TTAGTAACGTAAAATA-TG-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAGCTTT-ATTTCATTGGAATCGGTCAATGATAATCGATTCAGTGAttt
gi|5 : TGCATTTTT----TACGCGAAATCTAAGATTCTACATTTACAAAGGCTGTACACATTCGGTACTGATACGGAGTTAATATGTCGTCATTGAATGATAAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAGAAAGATTACATAATAAACACGAAAACATGTC-AAATTATATACCCTTGGCGA-AATAATTGAATAGTTATTGTT--------------TCA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGCGTACGGAAAGGCCAAAAACGTATTTCCCGCCATCTGTCAACCGGCAC--TTGATAACCAATCAAAACCATA----CA----AGATATTCGCAACGTGAAACCGGAAGTAACTTGGCAACGCAAATGTTTGAATAGTTTAGGAACGTAAAATATTA-ATTTTATAGGTAAAACAAGACTT-A--TCTGTTGTTATTACATGATGTTAATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTAACATCGGCCATGGATCATGAAT
gi|6 : TGCATTTTT----C-CGCGATATCCAAATTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGAGTAAATATGTCGTCATGG-ATGATAAGCCAAAATTTAAACCTAACGGTTTGAAGGTTTGAAATTTGGTTA-GACTATAT--CAGAAATTTTACATAATACACAAGAAAACATGTG-AAATTATATACCCTTGCTGAAAACAATTGAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----A-TTT------ATTGTTATTGTGTGTGCACGACAAAACCG-GAACGTATTACCCGCTATCTGTCAAACGGCAT--CTGATAACAAATCAAAATCTAA----CT----GGATATTCGCACCGTGCAACCGGAAGTTTCTTAGCAAAGCAAGTGTTGAACTCGTTTAACAACGTAAAATATTA-TTTTTATAGGTAAAACACGACTT-ATCTCTGTTGTTATTACATGATGTATATGTTTGGAATATTA-TTTTCTACTTACGCTA-TAGCTTT-ATTACATTGAAATCGGCCATGGATCAT
gi|7 : TGCATTTTT----C-CGCGAATTTCAAGTTTCTACATTTACGAAGGCTGTACAAATCCGGTACTAACACGGAGTGAATATGTCCTAGTTGCATGATATGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAAT--------------AT--GAGAAGTATTACATAATAAACATGAAAACATTAC-AAAATATATACCCTTGGTAAAAACAATTAAATGGTTCTTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AAAGTTAGCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCTCGCCATCTGTCAAATGGCAC--CTGATAACCATTCAAAATCAAA----CA----AGTTATTTGTACCGTGCAACCGGAAGTAACCAGGCAGAGCAAATGTTGGA-TCATTTAGGAATGTAAAATATTA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTACCTACATGATGTATATGTTCAGAATATTATTTTTCTACTTGCGCTT-TAACCTT-ATTTTATTGAAATCGGTCATGGA
gi|8 : ATTTTTTCCCC-CGCGAAATCCAAGTTTCTTCATTTACGAAGGCTGTACACATCCGATACTGACACGGATTAAATATGTCGTCATTGCATGATTAACCAAAATTTAAACCTTACAATTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACAAAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGAAAACAATTAAATAGTTATTATT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----AA----AGATATTCGCACCGTGCAACCGCAAATTACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTTTTACATGATGTATAAGTTTAGAA--------------------TA-TAACTTT-ATTTCATTGAAATCGGTCATGGGTCATGGATTCcgcagt
gi|9 : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACAGTTACGAAGGATGTACACATCCGGTACTAACAAGGACTGAACATGTCGT-ATTACCTGATTTGCCAAAATTTAAACTTTACATTTTGAAAGTTTGAAATTTGGTTA-GAATATATA-AAAAAATATTACATATTAAACACGAAATCATGTC-TAATTATATACCCTTGATGAAAACAATTAAATATTTATTGTT--------------TTA--------TCATGTTGAATTATC----A-TTT------AAGGCCATCGTGTGTGTACGGAAAGAAAGAAAA-GTATTTCCCGCCATCTGTCAAACGG-----CT------------------------CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGAATCGTTTAGGAACGTAAAATATTA-ATTTTATGGGCAAAACACGACCT-A--TCT-TTGTTATTACATGATGTGTATGTTTGGAATACTA-TTTTCTACTTACGATA-TAACTTT-ATTTCATTGGACTCGATCATGGATCATGGATTCAGT
blockSeqs : TCCC A G G AT A C A . GAAATTCA CTTAA C . AT ATCG TGTT A T A TC T T C .
blockSeqs : . . T . A . G C . . C . . . AT . A . . . . G . .
blockSeqs : . . G . . . T A . . C . . . . . C . . . . T . .
blockSeqs : . . G . . . N N . . C . . . . . C . . . . G . .
blockSeqs : . . T . . . A C . . A . . . . . A . . . . T . .
blockSeqs : . . T . . . G T . . A . . . . . C . . . . G . .
blockSeqs : . . C . . . G A . . A . . . . . A . . . . T . .
blockSeqs : . . T . . . T C . . C . . . . . C . . . . G . .
blockSeqs : . . T . . . G C . . C . . . . . T . . . . T . .
blockSeqs : . . G . . . G C . . A . . . . . C . . . . T . .
blockSeqs : . . T . . . A C . . C . . . . . A . . . . T . .
blockSeqs : . . T . . . G A . . A . . . . . C . . . . G . .
blockSeqs : . . G . . . T A . . A . . . . . C . . . . G . .
blockSeqs : . . G . . . T A . . C . . . . . A . . . . G . .
blockSeqs : . . G . . . T A . . C . . . . . . . . . . T . .
blockSeqs : . . T . . . G . . . C . . . . . . . . . . T . .
blockSeqs : C . T . . . A . . . . . . . . . . T . .
blockSeqs : C . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ************** ******
originalCons : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
finalCons : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
Alignments
lowQualScore : 11111111111111
lowQualScore : 5555 2 1 2 55 2 2 3 33333333333333 88888888 55555 2 666666 22 7777 4444 5 2 2 33 2 3 2 2 0
lowQualScore : .... . . . .. . . . .............. ........ ..... . ...... .. .... .... . . . .. . . . . .
lowQualScore : 0000 4 0 4 66 2 1 9 11111111111111 11111111 00000 1 111111 88 0000 2222 3 1 2 11 0 0 0 0 6
consensus : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
Reference ( family-2177 ) : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGANTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGANAACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTGA
gi|1 : TGTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGATTGAATATGTGGTCATTACATGATTAGCCAAAATTTAAACCTTACATATTGAAGGTTTGAAATTTGGTTA-GAATATAT--GAAAAATATTACATAATTAACACAAAAACATGTC-AAACGATAAACTCTTGATGACAACAATTAGATAATTATTGTTTTATAAATATTGTTTTA--------TAATGTTCAACTATA----A-TTTTAAAAAAATGATACCGTTTGTGTACGGAAAGACCGAAAACATATTTCCCACCGTCTGTCAAACGGCAC--CTGATAACCAATCAAA--------------------ATTCACACCATGCAACCAGGAATAACTAGGCAAGGCAAATGTTGAACTCGTTTAGGAACATAAAATATTA-ATTTTATAGGCAAAACATGACCT-A--TCTGTTGTAATTGCATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAACTTTCATTTTATTGAAATAGG-------TCACGGATTCAGTGA
gi|10 : TATATATATCCGGTTCTTACACGGAGTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACAGTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CATAAATATTACATAATAAACATGAAA-CGTGTC-AAATCATATACCCTTGGTGAAAACAATTAAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----A-TTT-------------------GTGTACGGAAAGACCGAAA-CGTATTTCCCGCCATCTGTCAAACGGCATATCTGAGAACCAATCAAAATCATAATCGCA----AGATAATCGCACCGTACAACCGGAAGTAACTAAGCAGAGCAAATATTGAGATCGTTTAGGAAAGTAAAATATAA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTATGCTA-TAACTTT-ATTTCATT-AAATTGGTTACGGATCATGGATTCAGTAA
gi|11 : agaTTTTC----C-CGCGAAATCCAAGTTTTT-CATTTACGAAGGCTGTACACATCCGGTAGTGACACGGATT-AATATGTCGTCATTGCATGATTAGCCAAAATT---------------AAAGGTTTGAAATTTGGTTT-GAACATAT--CAAAG-TATTACATAATAAACACGAAAACATGCT-AAACGTTATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TAA--------TAATGTTCAACTA-C----ACTTT------AGCGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGACAC--CTGATAACAAATGAAATTCATA----CA----GGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGGCA-------------TTTAGGAACGCAAAATATTA-ATTTCACAGGCAAAACACGACCT-A--TCTATTG---TTACACGATGTATATGTTTAGAATATTA-TTTT----------------CTTT-ATTTTATTGAAATCGGTGATGGATCATCGATTCAGTGA
gi|12 : TGCATTTTC----C-CCAAAAATCCAAGTTTCTACTTTTACGAAGGGTGTACACATCCGGTACTGACACGGAGTGAATATGTTGTCATTGTATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATATATCAGAAATATTACATAATAAACATGAAAACAAGTC-AAATTATATACTCTTGGTGAAAACAATTAAATGGTTATTATT--------------TCAGAAATTCATAATGTTCAACTATCTTAAA-TTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACGTATTTCCCACCAACTGTCAAATGGTAC--CTGATAACCAGTCAAAATCATA----CA----AGATATTCGCATCGTGCAACCGGAAATAACTAGGCACCGCAAATGTTAGAATTGTTTAGGAACGTAAAATATTA-ATCTTAT
gi|13 : GTATTTTT----C-CACGAAATCCAAATTTCTACATTTACACAGGCTGTACACATGAGGTACTGACATGGAGTATATGTGTCATCATTGCATGATTAGCCAATATTTAAACCTTGCATTTTAAAGGTTTGAAATTTTGTGA-GAATATAT--CAGAAATATNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------------------------TTG--------TAATGTTCAGCTATC----A-TTT------AACGTTATCTTGTGTGTATGGAAAGACCGAAA-CATATTTCCTGCCATCTGTCAAATGGTAC--CTGATAACCAATTAAAATCATA----AA----AGTTTTTTGCATAGTGCAACCGGATGTAACTAAGCAGAGCAAA--------TCATTAAGGAACATAAAATATTT-ATTTTATAGGTAAAACACAACTT-A--TCTGTTGTT
gi|14 : GTATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAATGCTGTACACACTCGGTACTGACACGGATGGAACATGTCGTCATTGCATGATTAGCCACAATTTAAACCTTATATTTTTAAGGTTTGAAATTTGGTTA-GAATATAT--CGAAAATATTACATAATAAACATGAAAACATGTC-AAACAATATACCCTTGATGACAACAATTAGATAGTTACTGTT--------------TTA--------TAAAGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGTAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATA
gi|15 : AACATGAACTCATGTC-AAACGATATACCCTTGATGTTAAGACGTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGACCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCGATCAAAAATATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAACATATTGTTTTTTATAGGCAAAACACGACCT-A--TCTTTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTT-TAATTTT-ATTTTATTGAAATCGGTCATGGATAATG
gi|16 : CATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAGGGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATAATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTT-GAATATAT--CAAAAATATTACATAATAAACATG-AATCATGTC-AAACGATATGCCTTTGATG---ACAATTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTATGGAAAGACCGAAAACATATTTC---CCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----CA----AGATATTCACACCATGCAACCGGA
gi|17 : tTGCATTTTT----C-CATGAAATCCAAGTTTCTACATTT------------TACATCCGGTTCTGACACAGACTGAATATGTCAGCATTGCATGATTAGCCAAAATTTAAACCTTACATTATGAAGGTTTGAAGTTTTATTAGGAATATAT--AAAAAATATTACATAATCAACATGAAAACATGTA-AAATTATATATCCTTGATGAAAACAATTAAATAGTTATTGTT--------------TTA--------TAATGATCATCTATC----A-TTT------AACGGTATCGTATGTGTACGGAAAGACCGAAAAAGTATTTCCCGCCATCTGTCAAACG
gi|18 : CTATC----A-TTT------AACGCTATCATGTATGAACAGAAAGACCGAAAACGTATGTCCTGCCATCTTTCAATCGGCAC--CTAATAGCCAATCAAAACCATA----CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAGAGCAAATGAT-----------GGAACGTAAAATATTA-ATTTTATATGTAAAACACG-CCTAA--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACTTACGCTA-TAACTTT-ATTTCATTGAAATCTGTCATGGAACATGGATTCAGT
gi|19 : aacATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTATACATCCGGTACTGACATGGATTGAATAATTTGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTTAAGGTTTGAAATTTTGTTT-GAATGTAT--CAAAAATATTACATAATAAACATGAAAACATTTC-AAACGATATACCCTTGATGGCAACAATTAAATAGTTACTGTT--------------TTA--------
gi|2 : tTGCATTTTT----C-CGCGAAATCCAAGTTTCTACATTTACGAAAGCTGTACACATCCGGTACTGACACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACATAATAAACATGAAAACATGTC-AAATGATATACCCGTGATGACAATA-TTAAATAGTTATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATTGTGTGTGTACGGAAAGGCCAAAAACGTATTTCCCACCATCTGTCAAATGGCAC--CTGATAACCAATCAAAATCATA----CA----AGACATTTGCACTGTGCAATCGGAAATAACTAGGCAAGGCAAATGTTGGACTTGTTTAGGAACGTAAAATATTA-ATTTTATAAGCAAAACACGACCT-T--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTATGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTGATGGATCATAGATTCAGTGAacacttataaaaaaaactatttgaatgtaattagtttattgaaaaa
gi|20 : TCAAACGGCAC--CTGATAACCAATCATAATCATAAT--CATGTTAGATTTTCGCACTATGCAACCAGAAGTAACTAGGCAAGGCAAATGTTGGCATCGTTTAGGAACGTAAAATATTA-ATTTTTTAGGCAAAACACGACTT-A--TCTGTTTTTATTACATGTTATATATGTTTAGAATATTA-TTTTCTACTTACACTT-TAACTTT-ATTTCATTGAAATCGGTCATGGATCATGGATTCAGTG
gi|21 : C--CTGATAACTGATCAAAATCATA----CA----AGATATTCGCACCGTGCAACCGGAAATAACTAGGCAAGACAAATGTTGGACTTGTTTAGGAACGTAAAATAATA-TTTTTATAGGCAAAATAAGACCT-A--TCTGTTGTTATTACATGATGTATATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTGAAATCGGTCATGGA
gi|22 : gTTCAACTATC----A-TTT------AACATTATCGTGTGTGTACCTACAGACCGAAA-CATCTTTCCCGCCATTTGTAAAATGACAC--TTGATAACCAATCAAAATCATA----C-------ATAGTCGTACCG-GAAACT----GCAACTAAGCAGAGCAAATGTTGGAATCGTTTCGAAATGAAAAATATTA-ATTGTActc
gi|23 : ATAGGTAAAACACAACAT-A--TCTGTTGTTATTACAGGATGTATATGTTTAGATTATTA-TTTTCTACTAACACTG-TAACTTT-ATTTCATTGAAATCGGTCATATATCATGGAATCATTGA
gi|24 : TTTT----C-CGCGAAAGCTAAGATTTTTCATTTACGAAGGCTGCACACATCCGGTATTGACACGGAGTGAATATGTCGTCATTACATGCTTAGCCAAACATGAAACCTAACATTTctt
gi|25 : GGCAAGGCAAATGATGGACTCGTTTAGGAACGTAAAATATTA-ACTTTATAGGCAAAACACGACCT-A--TCTGTTGTTGTTACATGATGTATATGTTTAGAATATTA-TTTTCTA
gi|26 : TATATATGTTTAGAATATTA-TTTTCTACGTATGCTACTAACTTT-ATTTCATTGAAATC-------GATCATGGATTCAGTGA
gi|27 : tgGTTTAGATTATTA-TTTTCTACTTGCGCTA-TAACTTT-ATTTCATTGAAATCGG-------TCATGGATTCAGTGAt
gi|28 : GTTTAGATTATCA-TTTTCTACTTACACTT-TAACTTT-ACTTCATTGAAATCAGTCATGGAT
gi|29 : cCTTACGCTT-TAACTTT--TTACATTGAAATCGG-------TCATGGATTCAGTGAtca
gi|3 : TGCATTTTT----T-GGCGAAATCCAAGTTTCTACATTTACGAAGGCTATTCATATCCGGTATTGACATGGATTGAATATGTCGTCATTGTATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTAGAAATTTGGTTA-GAATATAT--CAAAACTATAACATAATAAACATGAAAACATTTC-AAACAATATAACCTTGATGACAAAATTTAAATAGTAATTGTT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACAATATGGTGTGTGTACAGAAAGACCGAAAACGTATTTCCCACCATCTGTCAAACAGCAC--CTGATAACAAATCAAAACTATA----CA----AGATATTCGCATCATGCAACCAGAAGCAACTAAGCAAGGCAACTGATGGATTCGTTTAAGATCA-AAAATATTC-ATTTTATAGGCAAAACATGACCC-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTATGCTA-TAACTTT-ATTTCATCGAAATCGGTCATGGATC-TAGATTCAGt
gi|30 : ATCGGTGATGGATCATGGATTCAGTGAc
gi|4 : CATTTTC----C-CGCGAAATCCAAGTTTCTACATTTACGAAGGCTGTACACATCCGGTATTGAAACGGATTGAATATGTCGTCATTGCATGATTAGCCAAAATTTAAGCCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--AGAAAATATTACAAAATAAACATGAAAACATGTCAAAACGATATACCCTTGATGACAACAATTAAATAGTTATTGTT--------------TTA--------TAATATTCGATTATA----A-TTT------AATGTTATCGTGTGTGTACGTAAAGATCGAAAACGTA-TTCCCGCCATCTGTCATACGGTAC--CTGATAACCAATAAAAATCGTA----CA----AGATATTTGCACCGTGCATCCGGAAATAACTTGGCAAGGCAAATGTTGGACTCG-TTAGTAACGTAAAATA-TG-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTATTACATGATGTATATGTTTAGAATATTA-TTTTCTACGTACGCTA-TAGCTTT-ATTTCATTGGAATCGGTCAATGATAATCGATTCAGTGAttt
gi|5 : TGCATTTTT----TACGCGAAATCTAAGATTCTACATTTACAAAGGCTGTACACATTCGGTACTGATACGGAGTTAATATGTCGTCATTGAATGATAAGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAGAAAGATTACATAATAAACACGAAAACATGTC-AAATTATATACCCTTGGCGA-AATAATTGAATAGTTATTGTT--------------TCA--------TAATGTTCAACTATC----A-TTT------AACGTTATCGTGTGCGTACGGAAAGGCCAAAAACGTATTTCCCGCCATCTGTCAACCGGCAC--TTGATAACCAATCAAAACCATA----CA----AGATATTCGCAACGTGAAACCGGAAGTAACTTGGCAACGCAAATGTTTGAATAGTTTAGGAACGTAAAATATTA-ATTTTATAGGTAAAACAAGACTT-A--TCTGTTGTTATTACATGATGTTAATGTTAAGAATATTA-TTTTCTACGTACGCTA-TAACTTT-ATTTCATTAACATCGGCCATGGATCATGAAT
gi|6 : TGCATTTTT----C-CGCGATATCCAAATTTCTACATTTACGAAGGCTGTACACATCCGGTACTGACACGGAGTAAATATGTCGTCATGG-ATGATAAGCCAAAATTTAAACCTAACGGTTTGAAGGTTTGAAATTTGGTTA-GACTATAT--CAGAAATTTTACATAATACACAAGAAAACATGTG-AAATTATATACCCTTGCTGAAAACAATTGAATAGTTATTGTT--------------TTG--------TAATGTTCAACTATC----A-TTT------ATTGTTATTGTGTGTGCACGACAAAACCG-GAACGTATTACCCGCTATCTGTCAAACGGCAT--CTGATAACAAATCAAAATCTAA----CT----GGATATTCGCACCGTGCAACCGGAAGTTTCTTAGCAAAGCAAGTGTTGAACTCGTTTAACAACGTAAAATATTA-TTTTTATAGGTAAAACACGACTT-ATCTCTGTTGTTATTACATGATGTATATGTTTGGAATATTA-TTTTCTACTTACGCTA-TAGCTTT-ATTACATTGAAATCGGCCATGGATCAT
gi|7 : TGCATTTTT----C-CGCGAATTTCAAGTTTCTACATTTACGAAGGCTGTACAAATCCGGTACTAACACGGAGTGAATATGTCCTAGTTGCATGATATGCCAAAATTTAAACCTTACATTTTGAAGGTTTGAAAT--------------AT--GAGAAGTATTACATAATAAACATGAAAACATTAC-AAAATATATACCCTTGGTAAAAACAATTAAATGGTTCTTGTT--------------TTA--------TAATGTTCAACTATC----A-TTT------AAAGTTAGCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCTCGCCATCTGTCAAATGGCAC--CTGATAACCATTCAAAATCAAA----CA----AGTTATTTGTACCGTGCAACCGGAAGTAACCAGGCAGAGCAAATGTTGGA-TCATTTAGGAATGTAAAATATTA-ATTTTATAGGTAAAACACGACTT-A--TCTGTTGTACCTACATGATGTATATGTTCAGAATATTATTTTTCTACTTGCGCTT-TAACCTT-ATTTTATTGAAATCGGTCATGGA
gi|8 : ATTTTTTCCCC-CGCGAAATCCAAGTTTCTTCATTTACGAAGGCTGTACACATCCGATACTGACACGGATTAAATATGTCGTCATTGCATGATTAACCAAAATTTAAACCTTACAATTTGAAGGTTTGAAATTTGGTTA-GAATATAT--CAAAAATATTACAAAATAAACATGAAAACATGTC-AAACGATATACCCTTGATGAAAACAATTAAATAGTTATTATT--------------TTA--------TAATGTTCAACTATA----A-TTT------AACGTTATCGTGTGTGTACGGAAAGGTCGAAAACGTATTTCCCGCCATCTGTCAAACGGCAC--CTGATAACCAATCAAAATCATA----AA----AGATATTCGCACCGTGCAACCGCAAATTACTAGGCAAGGCAAATGTTGGACTCGTTTAGGAACGTAAAATATTA-ATTTTATAGGCAAAACACGACCT-A--TCTGTTGTTTTTACATGATGTATAAGTTTAGAA--------------------TA-TAACTTT-ATTTCATTGAAATCGGTCATGGGTCATGGATTCcgcagt
gi|9 : TGCATTTTT----C-CGCGAAATCCAAGTTTCTACAGTTACGAAGGATGTACACATCCGGTACTAACAAGGACTGAACATGTCGT-ATTACCTGATTTGCCAAAATTTAAACTTTACATTTTGAAAGTTTGAAATTTGGTTA-GAATATATA-AAAAAATATTACATATTAAACACGAAATCATGTC-TAATTATATACCCTTGATGAAAACAATTAAATATTTATTGTT--------------TTA--------TCATGTTGAATTATC----A-TTT------AAGGCCATCGTGTGTGTACGGAAAGAAAGAAAA-GTATTTCCCGCCATCTGTCAAACGG-----CT------------------------CA----AGATATTCGCACCGTGCAACCGGAAGTAACTAGGCAAGGCAAATGTTGGAATCGTTTAGGAACGTAAAATATTA-ATTTTATGGGCAAAACACGACCT-A--TCT-TTGTTATTACATGATGTGTATGTTTGGAATACTA-TTTTCTACTTACGATA-TAACTTT-ATTTCATTGGACTCGATCATGGATCATGGATTCAGT