lowQualScore : 1 22222222 22 11 1 1 4444444 111111111111 1 33333333333 11111 11 1 111111111 11 11 3333333 1111111111111 3333 1
lowQualScore : 5 6 44 7 5 2 33 2 33333333 2 4 2 2 0 44 6 77 2 33 55 66 2 2 0 333 4444 333 666 2 7 66 1 2 7777777 0000000 55 444 444444444444 1 6 2 2 2 44444444444 444 33 2 66666 666 66666 77 2 44444 2 00 1 444 77777 3 7 555 9 7 777777777 8 3 11 77 5555 1 0 33 2 0000000 2 5555 33 1 2 5555555555555 2 4 66 1 8888888888 999999999999 1 5 22 2 4444 4444 22 2 1111 0
lowQualScore : . . .. . . . .. . ........ . . . . . .. . .. . .. .. .. . . . ... .... ... ... . . .. . . ....... ....... .. ... ............ . . . . . ........... ... .. . ..... ... ..... .. . ..... . .. . ... ..... . . ... . . ......... . . .. .. .... . . .. . ....... . .... .. . . ............. . . .. . .......... ............ . . .. . .... .... .. . .... .
lowQualScore : 2 4 55 9 3 1 55 4 77777777 4 4 4 2 4 55 2 55 2 11 44 88 2 2 3 999 7777 999 111 2 3 88 0 4 6666666 0000000 33 111 888888888888 6 9 9 8 9 66666666666 777 77 7 77777 222 77777 33 4 33333 9 55 1 777 77777 1 1 444 5 8 555555555 0 6 22 11 7777 5 6 99 5 8888888 5 3333 44 9 4 0000000000000 0 0 22 8 0000000000 333333333333 8 1 55 0 2222 2222 99 1 4444 8
consensus : NCTTCGCAGAGTTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAG-T----TTAT-GCAGTTGTAAGCATATTGTT-AAAA-CCAGACAACAAAACT-AGAAAC-A-AAT--CAT-CACTA-TTTTACATTAG-AA-CAAAAAC---AACA----AAG---CA---GC-TTTTACA-CGAATAAATGATGAACTATTTTCTTGTTT-T-------TT-TTT-TTACGCAGA--GCG---ATTT-C--------CCGATTAATACGCAAATGTAAACAAACATGGA-AGATATCA-ACG-C--GATCGTTCGTTGT---TATGATG--A-A-----AACATTGT--TTTAAGGG-----ATAAA--CAGC-----G-TGAT-GCCCTGTTAT---ATTTGGCGAGCAGAA-----A-GAGA---TATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGA-GT-TTGCT-GTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAAT-GNC-----GT-G----G--AAGCC-A-T----T-T--G-AA-A-TG-GCAGTGATCATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGA--AAGTAGTCCG-GAGC----C----AATGACA--GA-G--GTGAATGTAATGAGTCGA
Reference ( gi|4 ) : TCTTAGCAGAGTTGTCGTTCGTTACACTCA--TTCACCTCCGCAACAGGCTAAACGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAG-T----T-AT-GCAGTTGTAAACATATTGTT-AAAA-CCAGACAACAAAACT-AGGAA--A-AAT--CAT-TACTT-TTTTACATTAG-AA-CAAAAGC---AACA----AAG---CA---AC-TTTGACA-AGAATAAATGATGAACTATTTTCTTGTTT-T-------TT-TTTGTTACGCAGA--GCG---ATAT-C--------CCGATTAATACGCAAATTTAAACAAATATGGA-AGATATCA-ATG-G--AATC-TTCGTTGT---TATGATG--A-A-----AACATTGT--TTTAAGGG-----ATAAA--CAGC-----G-TGAT-TCCCTATTAT---ATTTGGCGAGCAGAA-----A-GATA---TATTTAATTGTCAGTTTTCCTGTCGGATACAGGAATGATTAGGA-GT-TCACT-TTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAAT-GTA-----GT-G----G--AAGCC-A-T----T-T--G-AA-A-TG-ACAGTGATCATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCAA--AAGTAGTCCG-GAGC----C----AATGACA--GA-G--G-GAATGTAATGAGTAGA
gi|7 : CTTCACAGAGTTATCGTTCATTACACTCA--TTCACGTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTAAAG-T----TTAT-TTAGCTGTAAGGATATTGTT-AATG-CTAGA-AACAAAGC------------AT--CAC-TA----TTTTACATTAG-AA-CAAAA-----AACA----A-----CA---AC-TTTTGCA-AGAATAAATGATGAACTATTTTCGTGTTG-T-------TT-TTT---ACACAGA--GCG---ATTT-C--------CCGATTTATATGCAATTGTAAACAAATATGAA-A-AGATCA-ACA-C--AATC-TTCGTTGT---TATGATG--A-A-----AACCTTGT--TTTAAGGG-----ATAAA--CCGC-----A-TGAT-GCCCTGTTAT---TTTTGGTGACCAGAA-----A-GAGA---GATTTAATTGTCAGTTTGCCTGTTGGATACAGGATGGGTTACGA-GT-TT-CT-GTACAGACGAAACA---GTTGAAGAGCATTGTTT--TCAAT-AGG-----GT-G----G--AA-------------------A-G-GGTACAATGATCATGTAAT-T----------GGAA------------A-GTCAAGTTAAGCTGA--AAGTAGTACG-GAGC----C----AATGACA--GA-G--GTGAATGTAATGAGTGGA
gi|11 : CTTCGCAGACTTACCGTTCGTTACACTCA--TTCACCTCTGCGACAGGC----------------------GAAACTT-AATAAATACAG-T----TCAT-GCAGTTGTAAACATATTGTT-AAAAACCAGACAACAAAACT-AGAAAC-A-AAC--CAT-CACTA-CTTTAAATTAG-AATCAAAAAC---AACA----AAG---CA---GC-TTTTACA-AGAATAAATGATGCACTGTTTTTTTGTTT-G-------TT-----TTACGCAGA--AAG---ATTTAC--------CCGAGTAATGCGCAAATGTAAACAAACATGGA-ATATATCA-ACA-C--GATCGTTTGTTGT---TATGATG--A-A-----AACATTG---TTTAAGGG-----ATATA--CA---------------CCGTATTAT---ACTTGatgtgttag
gi|10 : cCTTTACAGAGTTATCGTCTGTTACACTCA--TTCACCTCTGCAACAAGCTAAATATCAGG--TTTTTG-ACGAAAATG-AGTAATCACAG-T----TTAT-GCACTTGTAAGCATATTGTTTAAAA-CTAGA-AACA---C------------AT--CGT-CACTA-TTTTACAT-AG-AT-CAAAAAC---AACA----AAG---GA---GC-TTTTACA-CAAATAGATGATTTACTATGCTCTTGTTT-T-------TT-T-----ACACAGA--GCA---ATTT-C--------TTGATTAATAGGCAAATATAAACAAACATGGA-AGATATCA-ACACG--ATTG-TTTGTTGTAAATATAATATCA-A-----CACGTTATCATCTAATAACAATTATAAAACCATCCAATTG-TGAT-TTCCTACCATTTAATTTtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgttacaaacaaaacagttgaaaagttttgttttcaatggtgtggacaatggcaatgttcatgtgactggatagtggtcaatgtaatgagtcgaatgtgttaggga
gi|1 : tcCTTCGCAGAGTTATCGTTCATTACACTCACATGTACTTCTGCAACGGGTTACATGTCAGGA-TTTTTTTACGAAACTT-AGCAATTACAG-T----TTAT-GATGATGTAAGCATATAGTT-GAAA-CCAGACAATAAAACT-AGAAA--ATAATAGCA---ACTC-TCTTACATTTA-AA-CACAATA---GACA----ATG---CATATAT-TTT-ACA-AG--TAAATGATGAACTAT----TTGTTT-A-------TA-TTTA--GCGCAGA--GCGGTTATAA-CG-------CCGA--A----GTAAA-TTAAAC------------ATGTC--ATG---------------------ATG-TA--A-A-------CATTGT--ATTAACGG-----ATACA--CAGC-----GTTGACATCTGTA--AT---GTTTGATCATCAAAAAAAGGA-GATG---TAT----TTCTCAGTTTGTCTG-CTGATACAGGAA-GAGTATTATTT-TTAAT-TTACTACCAAAACatagaattttgtattgtctaagacaaaagttgatgagcgttgtttcaatggcgtggaagccattttgtaatggtagtgatcatgtgtcacgtgaagtcgaaagtagccgtgagtcaatgacagagttgaatgtaatgagtcgaatgtgttagaga
gi|16 : cCTTCGCAGAGTAATCGTTTGTTACACTCA--TTCACCTCTGCAACCGGCTTAATGTCAAGA-TTTTTG-ACGAAAttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaaatgcagtgatcagatcatgtgactgaaacgtcactggtcatgttacctaaaaatcacatggagccgaaagtagtccggagcctatgacagaggtgaatgtaatgagtcgactgtgttagaga
gi|31 : tcCTTCACATAGTTATCATTTGTTACACTTG--TTCAACTCTGCAACAAGCTAAATGTCATGA-TTTTTG-ACGAAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattaaacaacacaacccaaccaatcgtcactgttttacattagaacaaaaataacaaagcagattttacacgaataaatgacagactattttcttgtgttttttttacgcagagcgatttcccgagtaatac
gi|36 : CTTCGCAGAGTTATCGTTCGTTACACCCG--TTCA
gi|5 : cTTCGCAGAGTAATCGTTTTTTACATTCA--TTCATCTCTGCAACAGGCTAAATGTCAAGG-GTTTTC-ACAAAACTT-AGTAATTACAG-T----T-TTTGCAGTTGTAAGCATATTGTT-CAAA-CCAGACAACACAACT-CAAAGC-A-AAT--CGT-CCCTA-TTTCACATTAG-AA-CTAAAAC---GAAA----AAG---CA---AC-TTTAACA-TGAATAA--------CTACTTTC--ATTT-T-------TT-T-----ACGCATA--ACA---ATTT-C--------CCGATTAATACTTAAATGTAAACACACATGGA-AGATACTACACG-----ATC-TTCGTTGT---TATGATG--A-A-----ATTATTGT--TTTAAGGG-----ATAAA--CAGC-----G-TGTT-GTCCTGTTAT---ACTTGGTGACCAGAA-----A-GCGA---TATTTCATTGTCAGTTTGCCTGTTGGATACGGAAACGGTTAGGATGT-T-GCT-GTACAGACAAAAAA---TTTGACGAGTATTGTTT--TCAAT----------T-GCTTTT--CATTC-ATT----T-T--G-AA-A-CG-ACAGTG-TCA-------T----------GAAA------------A-GTCACGTGAAGCCGA--AAGTAGTCCG-GAGC----C----AATGGCA--GACG--T-AAATCCACTGAGTCGA
gi|8 : TTCGCAGAGTTATCGTTCGTTACACTCT--TTCACCTCTGCACCTGGCTCAATGTCAGGA-TTTTAG-ACGAAACTT-AGTAATTACAGTT----T-AT-GCAGTTGTGAGCGTATTGTT-AAAC-CCAAACAACACAACT-AGAAAC-A-AAT--CAT-CACTA-TTTTACATTAG-AA-CAAAAAC---AAAA----AAG---TA---GC-TTTTACA-CGAATTAATTATGAACTATTTTCTTATGT-T-------TT-T---CTAAGCAGA--GCG---ATTT-C--------CCGACTAATACGCAAATGTAAACAAACATTGA-AGATATTA-ACA-T--GATCGTTCGTTGT---TTAGATG--A-G-----AACATTGT--TTTAAGGA-----ATAAA--TAGC-----G-TGA------------------TGACGAGCAGAA-----ATTATAACTTATTTAacgtgttagag
gi|12 : TTCGCAAAGTTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTT-ACTTAACTT-AGTAATC-CAGTT----T-AT-GCAGTTGTAAACATATTGTG-AAAA-GCAGACAACAAAATT-AGAAAC-A-AAG--CAC-TACTA-TTTTACATTAG-AA-CAAAAAC-----C----------------GC-TTTTACA-CGAATAAATGATGAACTA-TTTCTTGTTTGT-------TTGTTTTTTACGCAGA--GTG---ATTT-C--------CCGATTAATACGCAAATGTAAGCAAACATGGA-AGATATCA-AAG-C--GATCGTTCGTTGT---TTTAATA--ACAATTCTAAC-TTGT--TT-----------ATAAAACCATCCGATTG-TGAT-TTCCTA--AC---ATTTtaaaactacccgattgtaatttcctaaactttaatttaaagaatctcgcatgtattggcgtggaagccatttttaaatgacagtgatcacgtgaagccgagagtagtgcagagtcaatgaaagaggtgaatgtaatgagtaaatgtgttaaagag
gi|2 : GCATAGTTATTGTTCATTACACTCA--TTCACCTCAGTAACAGGCTAAACGTCATG--TTTTTT-ACGAAACTA-AGTAATTACAC-TAAAAT-AT-GAAGTTGTAAGCATACTGTA-AAAA-TCAAACAACACAACTTAACAC--A-AAT--TAT-CCCTA-CTTTACATTAG-AA-CAAAAAC---AACA----AAG---CA---AC-TTTTCCA-AGAATAAATGATGAACTATTTTCTTGTTT-T-------GT-TTT--TACGCAGA--GCG---ATTT-C--------CAGGTTAATAAGTAAATATAAACAAACATGGA-AGATATCA-ACA-C--GTTC-TTTATTGT---TATGATG--A-A-----AACATTGT--TTTAAGGG-----ATAAA--CAAC-----A-TGAT-GTCCTATTGT---ATTTGGCGAGTAACA-----A-TAGA---TAGTTAACTGTAAGTTTGCCTGTTGAATACGGGAATTGTTAAGA-GT-TTGCT-GTACAGACTTAACA---GCTGACGAGTGTTGTT-------T-GTAGC---GT-G----A--AAGCCTT-T----T-T--G-GA-A-TG-ACAGTGGTCATGTGAC-T----------GGAA------------A-GTAACGTGAAGCCGA--AAATAGTTCA-GAGC----C----ACTGACA--GG-G--GTAAATGTAA-GAGTaatttaaagaatctg
gi|3 : ccgtcGCAGAGTTACCGTTTATTACAATAC--TTTACCTCTGCT---GGCTAAACGTCAGGA-TTGTTT-ACGAAACTT-TGTAAATACAG-T----TTAT-GCAGTTGTAAGCATATTGTT-AAAT-TAATATATCAAAACA-AAAAAC-A-AAT--CAG-CATTA-TTTTAAATCAG-AA-CCAAAAC---AACA----AAG---CA---AC-TTTTACA-ATAATAAATAATGAACTGTTTTCTTCTTT-TAAAATAGTT-TATATTA---------------TTT-CTTCTTTTTCCGATTAATACGCAAATTTAAACAAACATGAA-AGATAT-A-ACA-C--GATC-TTCATTGT---TATGATG--A-A-----AACATTGA--TTTTAGGG-----ATACA--CAGC-----G-TGAT-GTCCTGTTAT---ATTTGGCGAGCAGAC-----A-GATA---TATTTAATAGTCAGTTTGCCTGTCGG--------ACGGTTAGGA-GT-TTGCT-GTACAGATAAAACA---TTTGACGAGCGTTGTTA--ACAATAGT------GT-G----G--AAGCC-ATT----T-T--G-AA-A-TG-ACAGTTATCATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGA--AAGTAGTACG-GAGC----C----AGTGACA--GA-G--GTCAATGTAATGAGTCGAcaaatgtgttagaaa
gi|15 : tcGCAGAGTTATCGTTCGTTACACCCT--TTCACCTCTGCAATAGGCTAAATGTCAGGA-TATTTT-ACGAAACTT-AGCAATTACAG-T----TCAT-G----------CATATTGTA-AAAA-CCAGACAACAAAACT-AGAAAC-A-AAT--CAT-CACTA-TTTTACATTAG-AA-CAAAAACAAAAACA----AA-----A---GT-TTTTACA-CGAATAAATGACGAACTCATTTCTTGT-----------------------------------ATA--------------ATTAATACACAAATGTAAACAAACATGGA-CTATATCA-AAA-C--GACCGTTCGTTGT---TATGATG--A-A-----AACACTGT--TTTatgtgctagag
gi|21 : tcGTAGAGTTATCGTTCGTTGCACTCA--TTCACCTCGGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTTCAGTAATTTCAGTT----T-AA-GCAGTTGTAAGCATATTGTT-CAAC-GCAGACAACAAAACT-AGAAAC-A-AAT--CAT-TACTA-TTTTACATTAG-AA-TAAAA-C---AACAGTTGAAG---CA---GA-TTTTACA-CGAATACATGTTGAACT-TTTT----TTC-T-------TT-TTTG--ACGCCGA--G
gi|6 : tcGCAGAGTTATCATTCGACACACTCA--TTCACCTCTGCAATAGGGTTAATATCAGGA-TTTGTG-ACGAAAC--------TTACAGTT----T-AT-GCCGTTGTAAGCATATTGTT-AAAA-CCAGCTACCAAAAAC-AAGAAACA-AAT--CAT-CACTA-TTTTACATAAG-AA-CAAAAAC---AACA----AAGCCTCA---AT-T---ACA-AGAATAAATTATGATC-ATTGTC-TGTGT-T-------TT-TTTGTTCCGTATAACACG---ATCT-C--------C
gi|32 : ctcGCCGAGTTATCGT-CGTTACACTCAC-TTCAgttgttataatgaaaacattgttttaagggataaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgccctgttatatttggcgagcagaaagagataattaattgtcagtttgcctgttggataattaggagtttgctgtacagataaacgatttgactagcgttgttttaaatggggtggaaccatttttaaatatggcagtgatcatgtgactgcgaagtcgtgtgaagccgaaagtagtacagcgctaatgacagaggtgaaagtaatgggtcgcgtgtgttagagac
gi|9 : cctccCATAGTTATCGTTCGTTACACGCG--TTCACCTCTGCAACAGGCTAAGTGTCAGGA-TTGTTG-ACGAAAGTT-AGTAATTAAAGTT----T-AT-GCAGTTGTAAGCATATTGTT-AGAA-CCAGATACCAAAACT-AGAAAC-A-AAT--CGT-CACTA-TTTTACATTTT-AA-CAAAAAC---AACA----AAG---AA---AC-TTTTACA-AGAATAAATGATG-ACTATTTT----TTT-T-------TT-T---------AAAT-GCA---A-AT-------------GTTAA----------CAAACA----TGGA-ATATATCA-ACA-C--GATC-TTCGTTGT---TATGACG--A-A-----AACATTGT--TTTACGGG-----ATACA--CAGC-----G-TGAT-ACCCTGTTAC---ATTTAGCGAGCAGAA-----A-GACA---TATTTAATTGTCAGTTTGCCTGTTGG--------ACGGTTCGGA-CT-TTGCT-GTACAAATAAAACA---TTTGATGAGCGTTGTTT--TCAAT-GCC-----G--------------C-A-------------AA-A-TG-GCAGTGATCCTGTGAC-C----------GGAA------------A-GTCACTTGAAGCCGA--AAGTAGTACG-GAGT----C----AATGACA--GA-G--GTGAATGTAATGAGTCGAatgtgaatgtaatgagtcgaatgtgttagagagtg
gi|17 : ctCAGAGTAAACGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAAATTC--GA-TTTTTG-ACGAAATGT-AGTAATTACAGTT----T-AT-GCAGTTGTAAGCATATTGCT-AAAA-TCAGACAACAAAACT-AGAAAC-A-AAT--CAT-CACTA-TTTTACTATAG-AA-CAAAAAC---AACA----AAG---CA---GC-TTTTACA-CGAATACATGATGAACTATTTTCTTGCTG-T-------TT-----TTACACAGA--TCG---ATTT-C--------CTGATTAATTCGCatgtgttagaga
gi|23 : cctCAGAGTTATTGTTCGTTACACTAA--T--------GCAGCAGGCTAAATATCAGGA-CTTTTG-ATGGAACTT-A-------CAG-T----GGAT-GCAGTTG----CTTATTATT-AAAA-CCAGACAACAAAACT-AGAAAC-A-AAT--CAT-CACTA-TTTTACATTAGAAA-AAAAAAC---ATCA----AAG---CAT--AA-TTT-ACATAGAATGA
gi|20 : tAGAGTTATCGTTCGTTACACTCA--TTCATCTCTGCAACAGGCTAAATATCAGGAATTTTTA-ACGAAACTT-AGTTACTACAG-T----TTAT-GCAGTTGTACGCGTATTGCT-TAAA-CCAGACAACACAACT-AGAAAC-A-AAT--CAT-C-CTTATTTTACATTAG-AA-CAAAAAC---AACA----AAG---CA---GC-TTTTATA-TAAATAAATGATGGACTATTTTCTTGCTG-T-------TT-----TTACACAGA--GCA---Atttcccgattaataagcaaatgcatacaaacatggaa
gi|13 : tttcgcagGTTTTCGTTCGTTACACACA--ATCACTT-----ATGGGCTTAATGTCAAGT-CGTTTT-ACGA--------TAA--ACAG-T----TTAT-ACAGATGAAGAT-TATTGTT-AAAA-CCAGACAACGAAAC--AAGAA--A-A----CATATA----TTTTACA--AA-AA-CAAAAAC---AACA----AAG---CA---GCGTTTTACG-CATATAAATGATGAACTATTTTCTTATGT-A-------TT-TTTAT---ACAGA--GCG---ATAT-C--------CCGATTAATACGCAAATGTAAACAAACATGGA-AGATAGCA-GTA-C--GATCGTTCGTTGT---TATGACG--A-A-----AACATTG--------------------A--CAAT-----G-TGAT-CCCCTATTTT---ATTTGGCGAGCAGAA-----A-TGGA---GATTTA
gi|16 : AAA-CAACACAACCCAACC-A---------AT--CGT-CACTG-TTTTACATTAG-AA-CAAAAAT---AACA----AAG---CA---GA-TTTTACA-CGAATAAATGACAGACTATTTTCTTGTGT-T-------TT-TT--TTACGCAGA--GCG---ATTT-C--------CCGAGTAATAC
gi|23 : tccttcgcagagtaatcgtttgttacactcattcacctctgcaaccggcttaatgtcaagatttttgacgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattTTACATAGA--ATG---ATTT-C--------CCGATTAATAAGCAAATGCATACAAACATGGA-A
gi|14 : tcagagttattgttcgttacactaatgcagcaggctaaatatcaggacttttgatggaacttacagtggatgcagttgcttattattaaaaccagacaacaaaactagaaacaaatcatcactattttacattagaaaaaaaaacatcaaagcataatCAAAGATAAATAAATA-CA-ACG-CCCAATT-TTTGTT-T---TATT-TG--A-A-----GAAATTG----------------ATAAA--CAGC-----G-TGAA-GCCCTGTTAT---AGTTGGAGAGCAGAA-----A-GAAA---TATCTAATTGTCAGTTTGCCTGTTGGATAT--GGATGGTTAGGA-GT-TTGCT-GTTCATACAA--------T--ACGAGTGTTGTTT--TCAAT-GC------GT-G----G--AAGCC-A-T----T-T------------------------TGAA-T----------GGAA------------A-GTCACGTGAAGCTTA--AAGTAGTCCA-GAGC----C----AGTGCCATTAA-G--ATAAATGTTATGAGT
gi|19 : caaaaagaaaaaacattttcgttcgtaccttcaaatattttttgcATCA-ACA-C--GATCGTTCGTTGT---TATGATG--A-A-----AACATTGT--TTTAAGAG-----ATAAC--AATC-----G-AGAT-TCCCTATTAT---ATTTGGCGAGAGGAA-----A-GAGA---GGCGTAATTGTCAATGTGCCTGTAGGATTCGGGAAcaaatgtgtttgaga
gi|6 : ATC-TCCGTTGT---TATAATG--A-A-----AACATTGT--TTTAAGGG-----ATAAA--CAaagcattcttttattttcagagtgatcatgtgactggaatgtcacgtgaagtcgaaaattgtccggagctgatggtagaggtgaatgtaatgagtggaatgtcttagag
gi|27 : ctcgcagagttatcattcgacacactcattcacctctgcaatagggttaatatcaggatttgtgacgaaacttacagtttatgccgttgtaagcatattgttaaaaccagctaccaaaaacaagaaacaaatcatcactattttacataagaacaaaaacaacaaagcctcaattacaagaataaattatgatcattgtctgtgtttttttgttccgtataacacgGGG-----ATAAA--CAAC-----G-TGAT-GCCCTGCTGT---TTTTGTCGAGCAGAA-----A-GGGA---GAAACAATTGTCA-TTT---------ATA---GAAT--CTCGTA-TTGTCAATGCTACAGACGAAACA---GTTGACGAGCGTTTTTTCCCCAAT-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgccctgttatatttggcgagcagaaagagataattaattgtcagtttgcctgttggataattaggagtttgctgtacagataaacgatttgactagcgttgttttaaatggggtggaaccatttttaaatatggcagtgatcatgtgactgcgaagtcgtgtgaagccgaaagtagtacagcgctaatgacagaggtgaaagtaatgggtcgcgtgtgttagagac
gi|6 : CCCTGTTAT---ATTTGGCGAGCAGAA-----A-GAGA---TAATTAATTGTCAGTTTGCCTGTTGGATA--------ATTAGGA-GT-TTGCT-GTACAGATAAACGA---TTTGACTAGCGTTGTTT--TAAAT-GGG-----GT-G----G--AA-CC-A-T----T-TTTA-AATA-TG-GCAGTGATCATGTGAC-T----------GCGA------------A-GTCGTGTGAAGCCGA--AAGTAGTACA-GCGC----T----AATGACA--GA-G--GTGAAAGTAATGGGT
gi|22 : ctcgcagagttatcattcgacacactcattcacctctgcaatagggttaatatcaggatttgtgacgaaacttacagtttatgccgttgtaagcatattgttaaaaccagctaccaaaaacaagaaacaaatcatcactattttacataagaacaaaaacaacaaagcctcaattacaagaataaattatgatcattgtctgtgtttttttgttccgtataacacgatctccgttgttataatgaaaacattgttttaagggataaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgTCGGCGAGCAGAA-----A-GATA---T--TTAATTGTCAATTT----GT---ATACAGGAAGGATTAGGA-GT-TTGCT-GTACAGACAAAACA---TTTGACAAGCCTTGTTT--TCAAT-GGC-----AT-A----G--ATGCC-ATT----T-T--G-AA-A-TG-GTAGTTATTATGTGAC-A----------GGAA------------A-GTCATGTGAAGACAA--AAGTAGTCCG-GAGCCATGC----AATGACA--GA-GTTG-AAAC-TAATGcgcgtgtgttagagac
gi|11 : T-TCAATGTTACAAACAAAACA---GTTGAAAAGTTTTGTTT--TCAAT-GGT-----GT-G----G--A--C-----------------A-A-TG-GCAATGTTCATGTGAC-T----------GGAT------------A-GTcatcggatgtgttagaga
gi|18 : ccttcgcagacttaccgttcgttacactcattcacctctgcgacaggcgaaacttaataaatacagttcatgcagttgtaaacatattgttaaaaaccagacaacaaaactagaaacaaaccatcactactttaaattagaatcaaaaacaacaaagcagcttttacaagaataaatgatgcactgtttttttgtttgttttacgcagaaagatttacccgagtaatgcgcaaatgtaaacaaacatggaatatatcaacacgatcgtttgttgttatgatgaaaacattgtttaagggatatacaccgtattatacttgtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattTACAGACAAAAAAAACGT-GACAAGCGTTGTTT--TCAAT-GAC-----GC-G----G--AAGCC-A-A----TAT--G-AA-A-TG-GCAGAGATCATGTGAC-T----------GAAA------------A-GTCAAGTCAAGCCGA--AAGTAATCAG-GAGC----C----AATGACA--GA-G--GTGAATGTAATGAGTCGAggtcaatgtaatgagtcgaatgtgttaggga
gi|24 : ccctgttatacttgtttataaaagtaaaaaccatccgagttagattttaaccatttaatttttaaaatatcttgttattaaatgcTGCAGACAAAACA---GT-----AGCATTGTTC--TTAAT-GGC-----GG-A----G--AAGCC-A-T----T-TT-G-AA-A-TG-GCAGTGATCATGTGAC-T----------AGAA------------A-GTCACGTGAAGCCGA--AAGTAATatgtgttagag
gi|26 : ttataaaaccattcctaccatctaattaatagaatctcgtattggcagtgcTACAGACAAAACA---GTTGACGAGC--TGTTT--TCAAT-GAC-----GTGG----G--AAGTC-A-C----G-T--G-AA-GCCG-AAAGTAGTCatttagtatata
gi|10 : gaatctggtactgtcaatgcAGACAAAA-----GTTGATGAGCGTTGTTT---CAAT-GGC-----GT-G----G--AAGCC-A-T----T-TT-G-TA-A-TG-GTAGTGATCATGTG---------------------------------TCACGTGAAGTCGA--AAGTAG-CCGTGAGT----C----AATGACA--GA-GT-T-GAATGTAATGAGTCGAcggcaccaatggcaggggtgaatgtaatgagtggaatgtgttagagagtg
gi|1 : tcctttacagagttatcgtctgttacactcattcacctctgcaacaagctaaatatcaggtttttgacgaaaatgagtaatcacagtttatgcacttgtaagcatattgtttaaaactagaaacacatcgtcactattttacatagatcaaaaacaacaaaggagcttttacacaaatagatgatttactatgctcttgtttttttacacagagcaatttcttgattaataggcaaatataaacaaacatggaagatatcaacacgattgtttgttgtaaatataatatcaacacgttatcatctaataacaattataaaaccatccaattgtgatttcctaccatttaatttatagaattttgtattgtctaAAT-GCA-----GT-G----ATCAGATC-A-TGTGAC-T--G-AA-A-CG-TCACTGGTCATGTTAC-C----------TAAA------------A-ATCACATGGAGCCGA--AAGTAGTCCG-GAGC----C----TATGACA--GA-G--GTGAATGTAATGAGTCGAatgtgttagaga
gi|8 : ccttcgcagagttatcgttcattacactcacatgtacttctgcaacgggttacatgtcaggatttttttacgaaacttagcaattacagtttatgatgatgtaagcatatagttgaaaccagacaataaaactagaaaataatagcaactctcttacatttaaacacaatagacaatgcatatattttacaagtaaatgatgaactatttgtttatatttagcgcagagcggttataacgccgaagtaaattaaacatgtcatgatgtaaacattgtattaacggatacacagcgttgacatctgtaatgtttgatcatcaaaaaaaggagatgtatttctcagtttgtctgctgatacaggaagagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaAT-GTATTGGCGT-G----G--AAGCC-A-T----T-T--TTAA-A-TG-ACAGTGATCA----------------------------------------CGTGAAGCCGA--GAGTAGTGCA-GAGT----C----AATGAAA--GA-G--GTGAATGTAATGAGTAAActgtgttagaga
gi|25 : ttcgcagagttatcgttcgttacactctttcacctctgcacctggctcaatgtcaggattttagacgaaacttagtaattacagtttatgcagttgtgagcgtattgttaaacccaaacaacacaactagaaacaaatcatcactattttacattagaacaaaaacaaaaaagtagcttttacacgaattaattatgaactattttcttatgtttttctaagcagagcgatttcccgactaatacgcaaatgtaaacaaacattgaagatattaacatgatcgttcgttgtttagatgagaacattgttttaaggaataaatagcgtgatgacgagcagaaattataacttatttataaaactacccgattgtaatttcctaaactttaatttaaagaatctcgc-----GT-A----G--AAGCC-A-T----T-TT-G-AA-C-TG--CGCTGATCATGTAAT-TTAAACGTAACGGAATGTGCGATTACAACGTTATGTGAAGTCGA--AATTATTT---GAGC----C----AATGACA--GA-G--GTGAATATAtgtgttaaagag
gi|29 : cagc-A-T----T-T--G-AA-AATG-GCAGTGACCATGTGAC-T----------GGAG------------A-GGTACGTGAAGCTGA--AAGTAGTCCT-GAGC----C----AATCACA--GA-G--ATCAATGTAATGAGTCGAtgtatattgagttgactctgatagagtg
gi|28 : ----T-T--G-AA-A-TG-GCAGTGATCACCTGAC-T----------GGAA------------A-GTCCCGTGAAGCCGA--AAATAGTCCG-GAGC----CAATGAATGACA--G--G--T-GAATGCAATGctgtgttgga
gi|33 : -T--G-AA-A-TG-GCAGTGATAATGTGAC-T----------AGAA------------A-GTCACGCAAAGCTGG--AAGTAGTCCG-GAGC----C----AAtgacgaatgtgttaaatagag
gi|30 : -A-TG-GCAATGATCATGTGAC-T----------GGAA------------A-GTCAAATAAAGTCGC--AAGTAGTCCG-GAGC----C----AACGACA--GA-G--GTGAATATAATGAGT
gi|19 : aaatAGTGATCATGTGAC-T----------GGAA------------T-GTCACGTGAAGTCGA--AAATTGTCCG-GAGC----T----GATGGTA--GA-G--GTGAATGTAATGAGTGGActatatattagaga
gi|34 : atcaacacgatcgttcgttgttatgatgaaaacattgttttaagagataacaatcgagattccctattatatttggcgagaggaaagagaggcgtaattgtcaatgtgcctgtaggattcgggaaaagcattcttttattttcagTCATGTGAC-T----------GAAA------------A-GTC---CGAAGCCAATGAAGTatgtcttagag
gi|26 : TGACGT----------GGGA------------A-GTCACGTGAAGCCGA--AAGTAGTCCG-GCAC----C----AATGGCA--GG-G--GTGAATGTAATGAGTGGAgaatgttatgcgtcgaatgtgcttgag
gi|34 : gaatctggtactgtcaatgctacagacaaaacagttgacgagctgttttcaaTCATGTGA--CTGA--AA--AGTCCG-AAGC----C----AATGA-----A-G--T-GAATGTTATGCGTCGAatgtgttagagagtg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|35 ): GCATTAAAATGTTTCATTTCCATTTAAATATAGAAAACATCTGATTCAAAATCACCAA
Alignments
lowQualScore : 2222222222222222222222 1
lowQualScore : 22 44 2 22 2 0 333 1 2 2 22 2 2 333 4444 22 2 22 66 2 7777777777777777777777 2 2 2 0 33 2 0 2 2 0 5555 2 0 3 33 4 444 33 3 1 0 44 33 0 555555 3 444 0 33 3 2 2 6 1 66 1 1 1 22 44444 1 7777777777 999999999999 1 1 4444 22 22
lowQualScore : .. .. . .. . . ... . . . .. . . ... .... .. . .. .. . ...................... . . . . .. . . . . . .... . . . .. . ... .. . . . .. .. . ...... . ... . .. . . . . . .. . . . .. ..... . .......... ............ . . .... .. ..
lowQualScore : 55 33 0 88 2 1 999 4 2 1 99 1 1 777 5555 99 1 99 55 2 1111111111111111111111 2 1 1 3 11 4 7 4 5 4 3333 5 1 6 44 1 444 44 2 4 6 22 99 2 888888 9 777 8 44 4 4 2 7 9 44 9 8 9 66 55555 7 6666666666 333333333333 8 9 0000 66 66
consensus : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGGCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
Reference ( family-2167 ) : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACGC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGNCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
gi|1 : CTTCGCAGAG--TTATCGTTCATTACACTCACATGTACTTCTGCAACGGGTTACATGTCAGGA-TTTTTTTACGAAACTT-AGCAATTACAGTT---TATGATGATGTAAGCATATAGTTGAAA-CCAGACAATAAAA-CTAGAAAATAATAGCA--ACTCTCTTACATTTA-AA-CACAATA---GACA----ATGCATATA-TT--TTACA---AGTAAATGATGAACTAT----T-T-----------G--T------TT-ATAT-TTAGCGCAGAGC--GGTT----------ATAACGCCGAAGTAAATTAAACAT---------------------------------GT---CATGATG--TAAACATTGTATTAACGGATACACAGCGT--TGACATCTGTAATGTTTGATCATCAAAAAAAGGAGATGTATTTCTCAGTTTGTCTGCT-GATACAGGAA
gi|1 : c--TTAACGAGGT-AAAAGCC-T-TT-T--G-AA-A-TG---CAGTGATCAGATCATGTGAC-T----------Ggagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaaatgcagtgatcagatcatgtgactgaaacgtcactggtcatgttacctaaaaatcacatggagccgaaagtagtccggagcctatgacagaggtgaatgtaatgagtcgactgtgttagaga
gi|1 : ccttcgcagagttatcgttcattacactcacatgtacttctgcaacgggttacatgtcaggatttttttacgaaacttagcaattacagtttatgatgatgtaagcatatagttgaaaccagacaataaaactagaaaataatagcaactctcttacatttaaacacaatagacaatgcatatattttacaagtaaatgatgaactatttgtttatatttagcgcagagcggttataacgccgaagtaaattaaacatgtcatgatgtaaacattgtattaacggatacacagcgttgacatctgtaatgtttgatcatcaaaaaaaggagatgtatttctcagtttgtctgctgatacaggaagagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaa-T--G-AA-A-CGT--CACTGGTC-----ATGTTAC-C----------TAAA------------A-ATCACATGGAGCCGAAAGTAGTCCG-GAGC----CTATGA--CA--GAGGTGAATGTAATGAGTCGAaaacgtcactggtcatgttacctaaaaatcacatggagccgaaagtagtccggagcctatgacagaggtgaatgtaatgagtcgactgtgttagaga
gi|10 : ccttcgcagagttatcgttcattacactcacatgtacttctgcaacgggttacatgtcaggatttttttacgaaacttagcaattacagtttatgatgatgtaagcatatagttgaaaccagacaataaaactagaaaataatagcaactctcttacatttaaacacaatagacaatgcatatattttacaagtaaatgatgaactatttgtttatatttagcgcagagcggttataacgccgaagtaaattaaacatgtcatgatgtaaacattgtattaacggatacacagcgttgacatctgtaatgtttgatcatcaaaaaaaggagatgtatttctcagtttgtctgctgatacaggaagagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaaatgcagtgatcagatcatgtgacCTTTACAGAG--TTATCGTCTGTTACACTCA--TTCACCTCTGCAACAAGCTAAATATCAGG--TTTTTG-ACGAAAATG-AGTAATCACAGTT---TATGCACTTGTAAGCATATTGTT-------------TAAAA-CTAGAAACACAT--CGTCACTATTTTACAT-AG-AT-CAAAAAC---AACA----AAGG--AGC-TT--TTACAC-AAATAGATGATTTACTATGCTCT-T-----------GTTT------TT-TT-----A-CACAGAGC--AATTT-CTTGATTAAT-AGGCAAATATAAA-CAAACATGG----A-AGATATCAACAC--GATTGTTTGTTGTAAATATAATATCAACACGTTATctgtgttagaga
gi|10 : tcAGACAAAA-----GTTGATGAGCGTTGTTT---CAATGGCGT-GGAAGCC-A-TT-TT-G-TA-A-TGG--TAGTGATC-----ATGTG---------------------------------TCACGTGAAGTCGAAAGTAG-CCGTGAGT----CAATGA--CA--GAGTTGAATGTAATGAGTCGAcatctaataacaattataaaaccatccaattgtgatttcctaccatttaatttatagaattttgtattgtctaagacaaaagttgatgagcgttgtttcaatggcgtggaagccattttgtaatggtagtgatcatgtgtcacgtgaagtcgaaagtagccgtgagtcaatgacagagttgaatgtaatgagtcgaatgtgttagaga
gi|11 : tcctttacagagttatcgtctgttacactcattcacctctgcaacaagctaaatatcaggtttttgacgaaaatgagtaatcacagtttatgcacttgtaagcatattgtttaaaactagaaacacatcgtcactattttacatagatcaaaaacaacaaaggagcttttacacaaatagatgatttactatgctcttgtttttttacacagagcaatttcttgattaataggcaaatataaacaaacatggaagatatcaacacgattgtttgttgtaaatataatatcaacacgttatcatctaataacaattataaaaccatccaattgtgatttcctaccatttaatttatagaattttgtattgtctaCTTCGCAGAC--TTACCGTTCGTTACACTCA--TTCACCTCTGCGACAGGC----------------------GAAACTT-AATAAATACAGTT---CATGCAGTTGTAAACATATTGTTAAAAACCAGACAACAAAA-CTAGAAACAAAC--CATCACTACTTTAAATTAG-AATCAAAAAC---AACA----AAGC--AGC-TT--TTACAA-GAATAAATGATGCACTGTTTTTT-T-----------GTTT------GT-TTT----A-CGCAGAAA--GATTTACCCGAGTAAT-GCGCAAATGTAAA-CAAACATGG----A-ATATATCAACAC--GATCGTTTGTTGT---TATGATG--AAAACATTG-TTTAAGGGATATACA--------CC--GTATTATACTTGatgtgttagaga
gi|11 : cTACAAACAAAACA---GTTGAAAAGTTTTGTTT--TCAATGGTGT-GGA--C-------------A-A-TGG--CAATGTTC-----ATGTGAC-T----------GGAT------------A-GTtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgttacaaacaaaacagttgaaaagttttgttttcaatggtgtggacaatggcaatgttcatgtgactggatagtggtcaatgtaatgagtcgaatgtgttaggga
gi|11 : ccttcgcagacttaccgttcgttacactcattcacctctgcgacaggcgaaacttaataaatacagttcatgcagttgtaaacatattgttaaaaaccagacaacaaaactagaaacaaaccatcactactttaaattagaatcaaaaacaacaaagcagcttttacaagaataaatgatgcactgtttttttgtttgttttacgcagaaagatttacccgagtaatgcgcaaatgtaaacaaacatggaatatatcaacacgatcgtttgttgttatgatgaaaacattgtttaagggatatacaccgtattatacttgtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgtGA--TA--GTGGTCAATGTAATGAGTCGAggtcaatgtaatgagtcgaatgtgttaggga
gi|12 : ccttcgcagacttaccgttcgttacactcattcacctctgcgacaggcgaaacttaataaatacagttcatgcagttgtaaacatattgttaaaaaccagacaacaaaactagaaacaaaccatcactactttaaattagaatcaaaaacaacaaagcagcttttacaagaataaatgatgcactgtttttttgtttgttttacgcagaaagatttacccgagtaatgcgcaaatgtaaacaaacatggaatatatcaacacgatcgtttgttgttatgatgaaaacattgtttaagggatatacaccgtattatacttgtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgttacaaacaaaacagttgaaaagttttgttttcaatggtgtggacaatggcaatgttcatgtgactgTTCGCAAAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTT-ACTTAACTT-AGTAATC-CAGTT---TATGCAGTTGTAAACATATTGTGAAAA-GCAGACAACAAAA-TTAGAAACAAAG--CACTACTATTTTACATTAG-AA-CAAAAAC--------------C---GC-TT--TTACAC-GAATAAATGATGAACTATTT-CT-T-----------GTTTGT----TTGTTTT-TTA-CGCAGAGT--GATTT-CCCGATTAAT-ACGCAAATGTAAG-CAAACATGG----A-AGATATCAAAGC--GATCGTTCGTTGT---TTTAATA--ACAAatgtgttaggga
gi|13 : G--TTTTCGTTCGTTACACACA--ATCACTTATG-----GGCTTAATGTCAAGT-CGTTTT-ACGA--------TAA--ACAGTT---TATACAGATG-AAGATTATTGTTAAAA-CCAGACAACGAAA-CAAGAAA---A---CAT-A-TATTTTACA--AA-AA-CAAAAAC---AACA----AAGC--AGCGTT--TTACGC-ATATAAATGATGAACTATTTTCT-T-----------ATGT------AT-TTTT-ATA-C--AGAGC--GATAT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATAGCAGTAC--GATCGTTCGTTGT---TATGACG--AAAACATTG-------------ACAATGTGATCCC--CTATTTTATTTGGCGAGCAGAAATG-GAGATTTAttctaacttgtttataaaaccatccgattgtgatttcctaacatttaatttaaagaatctg
gi|14 : -CAAAGATAA----ATAAATA-CAACGCCCAATT-TTTGTT-T---TATT-TG--AAGAAATTG---------ATAAACAGCGTGAAGCC--CTGTTATAGTTGGAGAGCAGAAAGA-AATATCTAATTGTCAGTTTGCCTGTTGGATATGG--ATGGTTAGGAGTTTGCTGTTCATACAA--------T--ACGAGTGTTGTTT--TCAATG-CGT-GGAAGCC-A-TT-T------------------------------TGAA-T----------GGAA------------A-GTCACGTGAAGCTTAAAGTAGTCCA-GAGC----CAGTGC--CATTAAGATAAATGTTATGAGTCAA
gi|15 : caaaaagaaaaaacattttcgttcgtaccttcaaatattttttgcTCGCAGAG--TTATCGTTCGTTACACCCT--TTCACCTCTGCAATAGGCTAAATGTCAGGA-TATTTT-ACGAAACTT-AGCAATTACAGTT---CAT----------GCATATTGTAAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAACAAAAACA----AA----AGT-TT--TTACAC-GAATAAATGACGAACTCATTTCT-T-----------G-TA------TA-ATTA-ATA-CACA-------------------AAT---GTAAA--CAAA-CA----TGG----A-CTATATCAAAAC--GACCGTTCGTTGT---TATGATG--AAAACACTGTTTTatgtgtttgaga
gi|16 : CTTCGCAGAG--TAATCGTTTGTTACACTCA--TTCACCTCTGCAACCGGCTTAATGTCAAGA-TTTTTG-ACGAAA
gi|16 : tcAAACAACACAA-CCC--AACCAAT--CGTCACTGTTTTACATTAG-AA-CAAAAAT---AACA----AAGC--AGA-TT--TTACAC-GAATAAATGACAGACTATTTTCT-T-----------G-TG------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGAGTAAT-ACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattaaacaacacaacccaaccaatcgtcactgttttacattagaacaaaaataacaaagcagattttacacgaataaatgacagactattttcttgtgttttttttacgcagagcgatttcccgagtaatac
gi|17 : tccttcgcagagtaatcgtttgttacactcattcacctctgcaaccggcttaatgtcaagatttttgacgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattCAGAG--TAAACGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAAATTC--GA-TTTTTG-ACGAAATGT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGCTAAAA-TCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACTATAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATACATGATGAACTATTTTCT-T-----------G---------CT-GTTT-TTA-CACAGATC--GATTT-CCTGATTAAT-TCGC
gi|18 : cctTACAGACAAAAAAAACGT-GACAAGCGTTGTTT--TCAATGACGC-GGAAGCC-A-ATAT--G-AA-A-TGG--CAGAGATC-----ATGTGAC-T----------GAAA------------A-GTCAAGTCAAGCCGAAAGTAATCAG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
gi|19 : ccctgttatacttgtttataaaagtaaaaaccatccgagttagattttaaccatttaatttttaaaatatcttgttattaaatgcATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGAGATAACAATCGAGATTCC--CTATTATATTTGGCGAGAGGAAAGA-GAGGCGTAATTGTCAATGTGCCTGTAGGATTCGGGAAatgtgttagag
gi|19 : AGTGATC-----ATGTGAC-T----------GGAA------------T-GTCACGTGAAGTCGAAAATTGTCCG-GAGC----TGATGG--TA--GAGGTGAATGTAATGAGTGGAaagcattcttttattttcagagtgatcatgtgactggaatgtcacgtgaagtcgaaaattgtccggagctgatggtagaggtgaatgtaatgagtggaatgtcttagag
gi|2 : atcaacacgatcgttcgttgttatgatgaaaacattgttttaagagataacaatcgagattccctattatatttggcgagaggaaagagaggcgtaattgtcaatgtgcctgtaggattcgggaaaagcattcttttattttcagTCGCATAG--TTATTGTTCATTACACTCA--TTCACCTCAGTAACAGGCTAAACGTCATG--TTTTTT-ACGAAACTA-AGTAATTACACTAAAATATGAAGTTGTAAGCATACTGTAAAAA-TCAAACAACACAA-CTTAACACAAAT--TATCCCTACTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AAC-TT--TTCCAA-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TG-TTTT-T-A-CGCAGAGC--GATTT-CCAGGTTAAT-AAGTAAATATAAA-CAAACATGG----A-AGATATCAACAC--GTTC-TTTATTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAACATGATGTC--CTATTGTATTTGGCGAGTAACAATA-GATAGTTAACTGTAAGTTTGCCTGTTGAATACGGGAATTGTTAAGAGTTTGCTGTACAGACTTAACA---GCTGACGAGTGTTGTTT-----GTAGCGT-GAAAGCCTT-TT-T--G-GA-A-TGA--CAGTGGTC-----ATGTGAC-T----------GGAA------------A-GTAACGTGAAGCCGAAAATAGTTCA-GAGC----CACTGA--CA--GGGGTAAATGTAA-GAGTCAAatgtcttagag
gi|20 : ccgTTCGCAGAGAGTTATCGTTCGTTACACTCA--TTCATCTCTGCAACAGGCTAAATATCAGGAATTTTTA-ACGAAACTT-AGTTACTACAGTT---TATGCAGTTGTACGCGTATTGCTTAAA-CCAGACAACACAA-CTAGAAACAAAT--CATCCTTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTATAT-AAATAAATGATGGACTATTTTCT-T-----------G---------CT-GTTT-TTA-CACAGAGC--AAatgtgttagaaa
gi|21 : tTCGTAGAG--TTATCGTTCGTTGCACTCA--TTCACCTCGGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTTCAGTAATTTCAGTT---TAAGCAGTTGTAAGCATATTGTTCAAC-GCAGACAACAAAA-CTAGAAACAAAT--CATTACTATTTTACATTAG-AA-T-AAAAC---AACAGTTGAAGC--AGA-TT--TTACAC-GAATACATGTTGAACT-TTT-----------------TTT------CT-TTTT-TGA-CGCCGAG
gi|22 : TCGGCGAGCAGAAAGA---TATTTAATTGTCAATTTGT-------ATACAGGAAGGATTAGGAGTTTGCTGTACAGACAAAACA---TTTGACAAGCCTTGTTT--TCAATGGCAT-AGATGCC-ATTT-T--G-AA-A-TGG--TAGTTATT-----ATGTGAC-A----------GGAA------------A-GTCATGTGAAGACAAAAGTAGTCCG-GAGCCATGCAATGA--CA--GAGTTGAAACTAATGCATCG
gi|23 : CAGAG--TTATTGTTCGTTACACTAA--T--------GCAGCAGGCTAAATATCAGGA-CTTTTG-ATGGAACTT-A-------CAGTG---GATGCAGTTG----CTTATTATTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAGAAA-AAAAAAC---ATCA----AAGC--ATA-AT--TTACATAGAATGAgatgtgttagaga
gi|23 : tT-TTA-CATAGAAT--GATTT-CCCGATTAAT-AAGCAAATGCATA-CAAACATGG----A-Atttcccgattaataagcaaatgcatacaaacatggaa
gi|24 : tcagagttattgttcgttacactaatgcagcaggctaaatatcaggacttttgatggaacttacagtggatgcagttgcttattattaaaaccagacaacaaaactagaaacaaatcatcactattttacattagaaaaaaaaacatcaaagcataaTGCTG--CAGACAAAACA---GT-----AGCATTGTTC--TTAATGGCGG-AGAAGCC-A-TT-TT-G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------AGAA------------A-GTCACGTGAAGCCGAAAGTAAT
gi|25 : ttataaaaccattcctaccatctaattaatagaatctcgtattggcagCGT-AGAAGCC-A-TT-T--T-GA-A-CTG--CGCTGATC-----ATGTAAT-TTAAACGTAACGGAATGTGCGATTACAACGTTATGTGAAGTCGAAATTATTT---GAGC----CAATGA--CA--GAGGTGAATATAatttagtatata
gi|26 : cagTACAGACAAAACA---GTTGACGAGC--TGTTT--TCAATGACGTGGGAAGTC-A-CG-T--G-AA-tgtatattgagttgactctgatagagtg
gi|26 : gaatctggtactgtcaatgcTGACGT----------GGGA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GCAC----CAATGG--CA--GGGGTGAATGTAATGAGTGGAgccgaaagtagtccggcaccaatggcaggggtgaatgtaatgagtggaatgtgttagagagtg
gi|27 : gaatctggtactgtcaatgctacagacaaaacagttgacgagctgttttcaaGGGATAAACAACGTGATGCC--CTGCTGTTTTTGTCGAGCAGAAAGG-GAGAAACAATTGTCA-TT----TATAGAAT-CTCGTATTGTCAA-----TGC--TACAGACGAAACA---GTTGACGAGCGTTTTTTCCCCAATGatgtgttagagagtg
gi|28 : T-T--G-AA-A-TGG--CAGTGATC-----ACCTGAC-T----------GGAA------------A-GTCCCGTGAAGCCGAAAATAGTCCG-GAGC----CAATGAATGA--CAGGTGAATGCAATGTGACGA
gi|29 : -A-TT-T--G-AA-AATGG--CAGTGACC-----ATGTGAC-T----------GGAG------------A-GGTACGTGAAGCTGAAAGTAGTCCT-GAGC----CAATCA--CA--GAGATCAATGTAATGAGTCGAatgtgttaaatagag
gi|3 : TCGCAGAG--TTACCGTTTATTACAATAC--TTTACCTCTGCT---GGCTAAACGTCAGGA-TTGTTT-ACGAAACTT-TGTAAATACAGTT---TATGCAGTTGTAAGCATATTGTTAAAT-TAATATATCAAAA-CAAAAAACAAAT--CAGCATTATTTTAAATCAG-AA-CCAAAAC---AACA----AAGC--AAC-TT--TTACAA-TAATAAATAATGAACTGTTTTCT-TCTTTTAAAATAGTTTATATTATT-TCTT-CT--------------TTT-TCCGATTAAT-ACGCAAATTTAAA-CAAACATGA----A-AGATAT-AACAC--GATC-TTCATTGT---TATGATG--AAAACATTGATTTTAGGGATACACAGCGTGATGTC--CTGTTATATTTGGCGAGCAGACAGA-TATATTTAATAGTCAGTTTGCCTGTCGG--------ACGGTTAGGAGTTTGCTGTACAGATAAAACA---TTTGACGAGCGTTGTTA--ACAATAGTGT-GGAAGCC-ATTT-T--G-AA-A-TGA--CAGTTATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTACG-GAGC----CAGTGA--CA--GAGGTCAATGTAATGAGTCGActgtgttgga
gi|30 : -A-TGG--CAATGATC-----ATGTGAC-T----------GGAA------------A-GTCAAATAAAGTCGCAAGTAGTCCG-GAGC----CAACGA--CA--GAGGTGAATATAATGAGTCatgtgctagag
gi|31 : aaatCTTCACATAG--TTATCATTTGTTACACTTG--TTCAACTCTGCAACAAGCTAAATGTCATGA-TTTTTG-ACGAAACTtatatattagaga
gi|32 : CTCCGCCGAG--TTATCG-TCGTTACACTCAC-TTCA
gi|32 : cGTGAATGTAATGAGTCGAatgtgaatgtaatgagtcgaatgtgttagagagtg
gi|33 : cctccgccgagttatcgtcgttacactcacttcaat-T--G-AA-A-TGG--CAGTGATA-----ATGTGAC-T----------AGAA------------A-GTCACGCAAAGCTGGAAGTAGTCCG-GAGC----CAAatgtgttagagagtg
gi|34 : TCATGTGA--CTGAAA--AGTCCG-AAGC----CAAT--------GAAGTGAATGTTATGCGTCGA
gi|36 : CTTCGCAGAG--TTATCGTTCGTTACACCCG--TTCAatgtgcttgag
gi|4 : cCTTAGCAGAG--TTGTCGTTCGTTACACTCA--TTCACCTCCGCAACAGGCTAAACGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT----ATGCAGTTGTAAACATATTGTTAAAA-CCAGACAACAAAA-CTAGGAA-AAAT--CATTACTTTTTTACATTAG-AA-CAAAAGC---AACA----AAGC--AAC-TT--TGACAA-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTTGTTA-CGCAGAGC--GATAT-CCCGATTAAT-ACGCAAATTTAAA-CAAATATGG----A-AGATATCAATGG--AATC-TTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATTCC--CTATTATATTTGGCGAGCAGAAAGA-TATATTTAATTGTCAGTTTTCCTGTCGGATACAGGAATGATTAGGAGTTCACTTTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGTAGT-GGAAGCC-A-TT-T--G-AA-A-TGA--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCAAAAGTAGTCCG-GAGC----CAATGA--CA--GAGG-GAATGTAATGAGTAGA
gi|5 : tTTCGCAGAG--TAATCGTTTTTTACATTCA--TTCATCTCTGCAACAGGCTAAATGTCAAGG-GTTTTC-ACAAAACTT-AGTAATTACAGTT---TTTGCAGTTGTAAGCATATTGTTCAAA-CCAGACAACACAA-CTCAAAGCAAAT--CGTCCCTATTTCACATTAG-AA-CTAAAAC---GAAA----AAGC--AAC-TT--TAACAT-GAAT--------AACTACTTTC------------------------AT-TTTT-TTA-CGCATAAC--AATTT-CCCGATTAAT-ACTTAAATGTAAA-CACACATGG----A-AGATA-CTACAC--GATC-TTCGTTGT---TATGATG--AAATTATTGTTTTAAGGGATAAACAGCGTGTTGTC--CTGTTATACTTGGTGACCAGAAAGC-GATATTTCATTGTCAGTTTGCCTGTTGGATACGGAAACGGTTAGGATGTTGCTGTACAGACAAAAAA---TTTGACGAGTATTGTTT--TCAATTGCTT-TTCATTC-ATTT-T--G-AA-A-CGA--CAGTG-TC-----A-------T----------GAAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGG--CA--GACGTAAATCCACTGAGTCGA
gi|6 : TCGCAGAG--TTATCATTCGACACACTCA--TTCACCTCTGCAATAGGGTTAATATCAGGA-TTTGTG-ACGAAACTT-A-------CAGTT---TATGCCGTTGTAAGCATATTGTTAAAA-CCAGCTACCAAAAACAAGAAACAAAT--CATCACTATTTTACATAAG-AA-CAAAAAC---AACA----AAGC----C-TCAATTACAA-GAATAAATTATGATC-ATTGTCTGT-----------GTTT------TT-TTGT-TC--CGTATAACACGATCT-CC--GTTGTT-AT---AATG---A--AAACATTGTTTTA-AGGGATAAACAN--NNNNNNNNNNNNN---NNNNNNN--NNNNNNNNNNNNNNNGG--------------TGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATAATTAATTGTCAGTTTGCCTGTTGGATA--------ATTAGGAGTTTGCTGTACAGATAAACGA---TTTGACTAGCGTTGTTT--TAAATGGGGT-GGAA-CC-A-TT-TTTA-AATA-TGG--CAGTGATC-----ATGTGAC-T----------GCGA------------A-GTCGTGTGAAGCCGAAAGTAGTACA-GCGC----TAATGA--CA--GAGGTGAAAGTAATGGGTCGacgtgttagag
gi|7 : cCTTCACAGAG--TTATCGTTCATTACACTCA--TTCACGTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTAAAGTT---TATTTAGCTGTAAGGATATTGTT--------------AATG-CTAGAAACAAAG--CATCACTATTTTACATTAG-AA-CAAAA-----AACA----A--C--AAC-TT--TTGCAA-GAATAAATGATGAACTATTTTC--------------GTGT------TG-TTTT-TTA-CACAGAGC--GATTT-CCCGATTTAT-ATGCAATTGTAAA-CAAATAT-G----A-AAAGATCAACAC--AATC-TTCGTTGT---TATGATG--AAAACCTTGTTTTAAGGGATAAACCGCATGATGCC--CTGTTATTTTTGGTGACCAGAAAGA-GAGATTTAATTGTCAGTTTGCCTGTTGGATACAGGATGGGTTACGAGTTT-CTGTACAGACGAAACA---GTTGAAGAGCATTGTTT--TCAATAGGGT-G---------------G-AA-A-GGGTACAATGATC-----ATGTAAT-T----------GGAA------------A-GTCAAGTTAAGCTGAAAGTAGTACG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTGGAcgtgtgttagagac
gi|8 : TTCGCAGAG--TTATCGTTCGTTACACTCT--TTCACCTCTGCACCTGGCTCAATGTCAGGA-TTTTAG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTGAGCGTATTGTTAAAC-CCAAACAACACAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AAAA----AAGT--AGC-TT--TTACAC-GAATTAATTATGAACTATTTTCT-T-----------A--T------GT-TTTT-CTA-AGCAGAGC--GATTT-CCCGACTAAT-ACGCAAATGTAAA-CAAACATTG----A-AGATATTAACAT--GATCGTTCGTTGT---TTAGATG--AGAACATTGTTTTAAGGAATAAATAGCGTGATGatgtgttag
gi|8 : TGGCGT-GGAAGCC-A-TT-T--TTAA-A-TGA--CAGTGATC-----A----------------------------------------CGTGAAGCCGAGAGTAGTGCA-GAGT----CAATGA--AA--GAGGTGAATGTAATGAGTacgagcagaaattataacttatttataaaactacccgattgtaatttcctaaactttaatttaaagaatctcgcatgtattggcgtggaagccatttttaaatgacagtgatcacgtgaagccgagagtagtgcagagtcaatgaaagaggtgaatgtaatgagtaaatgtgttaaagag
gi|9 : ttcgcagagttatcgttcgttacactctttcacctctgcacctggctcaatgtcaggattttagacgaaacttagtaattacagtttatgcagttgtgagcgtattgttaaacccaaacaacacaactagaaacaaatcatcactattttacattagaacaaaaacaaaaaagtagcttttacacgaattaattatgaactattttcttatgtttttctaagcagagcgatttcccgactaatacgcaaatgtaaacaaacattgaagatattaacatgatcgttcgttgtttagatgagaacattgttttaaggaataaatagcgtgatgacgagcagaaattataacttatttataaaactacccgattgtaatttcctaaactttaatttaaagaatctcgcatgtatCATAG--TTATCGTTCGTTACACGCG--TTCACCTCTGCAACAGGCTAAGTGTCAGGA-TTGTTG-ACGAAAGTT-AGTAATTAAAGTT---TATGCAGTTGTAAGCATATTGTTAGAA-CCAGATACCAAAA-CTAGAAACAAAT--CGTCACTATTTTACATTTT-AA-CAAAAAC---AACA----AAGA--AAC-TT--TTACAA-GAATAAATGATGA-CTATTTT--------------------------T-TTTT-TTA------------------------AAT---GCAAATGTTAA-CAAACATGG----A-ATATATCAACAC--GATC-TTCGTTGT---TATGACG--AAAACATTGTTTTACGGGATACACAGCGTGATACC--CTGTTACATTTAGCGAGCAGAAAGA-CATATTTAATTGTCAGTTTGCCTGTTGG--------ACGGTTCGGACTTTGCTGTACAAATAAAACA---TTTGATGAGCGTTGTTT--TCAATGCCG--------C-A---------AA-A-TGG--CAGTGATC-----CTGTGAC-C----------GGAA------------A-GTCACTTGAAGCCGAAAGTAGTACG-GAGT----CAATGA--CA--GAGGTGAATGTAATGAGTCGAaaatgtgttaaagag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): GCATTAAAATGTTTCATTTCCATTTAAATATAGAAAACATCTGATTCAAAATCACCAA
Alignments
lowQualScore : 2222222222222222222222 1
lowQualScore : 22 44 2 22 2 0 333 1 2 2 22 2 2 333 4444 22 2 22 66 2 7777777777777777777777 2 2 2 0 33 2 0 2 2 0 5555 2 0 33 4 444 33 3 1 0 44 33 0 555555 3 444 0 33 2 2 6 1 66 1 1 1 22 44444 1 7777777777 999999999999 1 1 4444 22 22
lowQualScore : .. .. . .. . . ... . . . .. . . ... .... .. . .. .. . ...................... . . . . .. . . . . . .... . . .. . ... .. . . . .. .. . ...... . ... . .. . . . . .. . . . .. ..... . .......... ............ . . .... .. ..
lowQualScore : 55 33 0 88 2 1 999 4 2 1 99 1 1 777 5555 99 1 99 55 2 1111111111111111111111 2 1 1 3 11 4 7 4 5 4 3333 5 1 44 1 444 44 2 4 6 22 99 2 888888 9 777 8 44 4 2 7 9 44 9 8 9 66 55555 7 6666666666 333333333333 8 9 0000 66 66
consensus : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGGCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
Reference ( family-2167 ) : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGGCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
gi|1 : CTTCGCAGAG--TTATCGTTCATTACACTCACATGTACTTCTGCAACGGGTTACATGTCAGGA-TTTTTTTACGAAACTT-AGCAATTACAGTT---TATGATGATGTAAGCATATAGTTGAAA-CCAGACAATAAAA-CTAGAAAATAATAGCA--ACTCTCTTACATTTA-AA-CACAATA---GACA----ATGCATATA-TT--TTACA---AGTAAATGATGAACTAT----T-T-----------G--T------TT-ATAT-TTAGCGCAGAGC--GGTT----------ATAACGCCGAAGTAAATTAAACAT---------------------------------GT---CATGATG--TAAACATTGTATTAACGGATACACAGCGT--TGACATCTGTAATGTTTGATCATCAAAAAAAGGAGATGTATTTCTCAGTTTGTCTGCT-GATACAGGAA
gi|1 : c--TTAACGAGGT-AAAAGCC-T-TT-T--G-AA-A-TG---CAGTGATCAGATCATGTGAC-T----------Ggagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaaatgcagtgatcagatcatgtgactgaaacgtcactggtcatgttacctaaaaatcacatggagccgaaagtagtccggagcctatgacagaggtgaatgtaatgagtcgactgtgttagaga
gi|1 : ccttcgcagagttatcgttcattacactcacatgtacttctgcaacgggttacatgtcaggatttttttacgaaacttagcaattacagtttatgatgatgtaagcatatagttgaaaccagacaataaaactagaaaataatagcaactctcttacatttaaacacaatagacaatgcatatattttacaagtaaatgatgaactatttgtttatatttagcgcagagcggttataacgccgaagtaaattaaacatgtcatgatgtaaacattgtattaacggatacacagcgttgacatctgtaatgtttgatcatcaaaaaaaggagatgtatttctcagtttgtctgctgatacaggaagagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaa-T--G-AA-A-CGT--CACTGGTC-----ATGTTAC-C----------TAAA------------A-ATCACATGGAGCCGAAAGTAGTCCG-GAGC----CTATGA--CA--GAGGTGAATGTAATGAGTCGAaaacgtcactggtcatgttacctaaaaatcacatggagccgaaagtagtccggagcctatgacagaggtgaatgtaatgagtcgactgtgttagaga
gi|10 : ccttcgcagagttatcgttcattacactcacatgtacttctgcaacgggttacatgtcaggatttttttacgaaacttagcaattacagtttatgatgatgtaagcatatagttgaaaccagacaataaaactagaaaataatagcaactctcttacatttaaacacaatagacaatgcatatattttacaagtaaatgatgaactatttgtttatatttagcgcagagcggttataacgccgaagtaaattaaacatgtcatgatgtaaacattgtattaacggatacacagcgttgacatctgtaatgtttgatcatcaaaaaaaggagatgtatttctcagtttgtctgctgatacaggaagagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaaatgcagtgatcagatcatgtgacCTTTACAGAG--TTATCGTCTGTTACACTCA--TTCACCTCTGCAACAAGCTAAATATCAGG--TTTTTG-ACGAAAATG-AGTAATCACAGTT---TATGCACTTGTAAGCATATTGTT-------------TAAAA-CTAGAAACACAT--CGTCACTATTTTACAT-AG-AT-CAAAAAC---AACA----AAGG--AGC-TT--TTACAC-AAATAGATGATTTACTATGCTCT-T-----------GTTT------TT-TT-----A-CACAGAGC--AATTT-CTTGATTAAT-AGGCAAATATAAA-CAAACATGG----A-AGATATCAACAC--GATTGTTTGTTGTAAATATAATATCAACACGTTATctgtgttagaga
gi|10 : tcAGACAAAA-----GTTGATGAGCGTTGTTT---CAATGGCGT-GGAAGCC-A-TT-TT-G-TA-A-TGG--TAGTGATC-----ATGTG---------------------------------TCACGTGAAGTCGAAAGTAG-CCGTGAGT----CAATGA--CA--GAGTTGAATGTAATGAGTCGAcatctaataacaattataaaaccatccaattgtgatttcctaccatttaatttatagaattttgtattgtctaagacaaaagttgatgagcgttgtttcaatggcgtggaagccattttgtaatggtagtgatcatgtgtcacgtgaagtcgaaagtagccgtgagtcaatgacagagttgaatgtaatgagtcgaatgtgttagaga
gi|11 : tcctttacagagttatcgtctgttacactcattcacctctgcaacaagctaaatatcaggtttttgacgaaaatgagtaatcacagtttatgcacttgtaagcatattgtttaaaactagaaacacatcgtcactattttacatagatcaaaaacaacaaaggagcttttacacaaatagatgatttactatgctcttgtttttttacacagagcaatttcttgattaataggcaaatataaacaaacatggaagatatcaacacgattgtttgttgtaaatataatatcaacacgttatcatctaataacaattataaaaccatccaattgtgatttcctaccatttaatttatagaattttgtattgtctaCTTCGCAGAC--TTACCGTTCGTTACACTCA--TTCACCTCTGCGACAGGC----------------------GAAACTT-AATAAATACAGTT---CATGCAGTTGTAAACATATTGTTAAAAACCAGACAACAAAA-CTAGAAACAAAC--CATCACTACTTTAAATTAG-AATCAAAAAC---AACA----AAGC--AGC-TT--TTACAA-GAATAAATGATGCACTGTTTTTT-T-----------GTTT------GT-TTT----A-CGCAGAAA--GATTTACCCGAGTAAT-GCGCAAATGTAAA-CAAACATGG----A-ATATATCAACAC--GATCGTTTGTTGT---TATGATG--AAAACATTG-TTTAAGGGATATACA--------CC--GTATTATACTTGatgtgttagaga
gi|11 : cTACAAACAAAACA---GTTGAAAAGTTTTGTTT--TCAATGGTGT-GGA--C-------------A-A-TGG--CAATGTTC-----ATGTGAC-T----------GGAT------------A-GTtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgttacaaacaaaacagttgaaaagttttgttttcaatggtgtggacaatggcaatgttcatgtgactggatagtggtcaatgtaatgagtcgaatgtgttaggga
gi|11 : ccttcgcagacttaccgttcgttacactcattcacctctgcgacaggcgaaacttaataaatacagttcatgcagttgtaaacatattgttaaaaaccagacaacaaaactagaaacaaaccatcactactttaaattagaatcaaaaacaacaaagcagcttttacaagaataaatgatgcactgtttttttgtttgttttacgcagaaagatttacccgagtaatgcgcaaatgtaaacaaacatggaatatatcaacacgatcgtttgttgttatgatgaaaacattgtttaagggatatacaccgtattatacttgtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgtGA--TA--GTGGTCAATGTAATGAGTCGAggtcaatgtaatgagtcgaatgtgttaggga
gi|12 : ccttcgcagacttaccgttcgttacactcattcacctctgcgacaggcgaaacttaataaatacagttcatgcagttgtaaacatattgttaaaaaccagacaacaaaactagaaacaaaccatcactactttaaattagaatcaaaaacaacaaagcagcttttacaagaataaatgatgcactgtttttttgtttgttttacgcagaaagatttacccgagtaatgcgcaaatgtaaacaaacatggaatatatcaacacgatcgtttgttgttatgatgaaaacattgtttaagggatatacaccgtattatacttgtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgttacaaacaaaacagttgaaaagttttgttttcaatggtgtggacaatggcaatgttcatgtgactgTTCGCAAAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTT-ACTTAACTT-AGTAATC-CAGTT---TATGCAGTTGTAAACATATTGTGAAAA-GCAGACAACAAAA-TTAGAAACAAAG--CACTACTATTTTACATTAG-AA-CAAAAAC--------------C---GC-TT--TTACAC-GAATAAATGATGAACTATTT-CT-T-----------GTTTGT----TTGTTTT-TTA-CGCAGAGT--GATTT-CCCGATTAAT-ACGCAAATGTAAG-CAAACATGG----A-AGATATCAAAGC--GATCGTTCGTTGT---TTTAATA--ACAAatgtgttaggga
gi|13 : G--TTTTCGTTCGTTACACACA--ATCACTTATG-----GGCTTAATGTCAAGT-CGTTTT-ACGA--------TAA--ACAGTT---TATACAGATG-AAGATTATTGTTAAAA-CCAGACAACGAAA-CAAGAAA---A---CAT-A-TATTTTACA--AA-AA-CAAAAAC---AACA----AAGC--AGCGTT--TTACGC-ATATAAATGATGAACTATTTTCT-T-----------ATGT------AT-TTTT-ATA-C--AGAGC--GATAT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATAGCAGTAC--GATCGTTCGTTGT---TATGACG--AAAACATTG-------------ACAATGTGATCCC--CTATTTTATTTGGCGAGCAGAAATG-GAGATTTAttctaacttgtttataaaaccatccgattgtgatttcctaacatttaatttaaagaatctg
gi|14 : -CAAAGATAA----ATAAATA-CAACGCCCAATT-TTTGTT-T---TATT-TG--AAGAAATTG---------ATAAACAGCGTGAAGCC--CTGTTATAGTTGGAGAGCAGAAAGA-AATATCTAATTGTCAGTTTGCCTGTTGGATATGG--ATGGTTAGGAGTTTGCTGTTCATACAA--------T--ACGAGTGTTGTTT--TCAAT-GCGT-GGAAGCC-A-TT-T------------------------------TGAA-T----------GGAA------------A-GTCACGTGAAGCTTAAAGTAGTCCA-GAGC----CAGTGC--CATTAAGATAAATGTTATGAGTCAA
gi|15 : caaaaagaaaaaacattttcgttcgtaccttcaaatattttttgcTCGCAGAG--TTATCGTTCGTTACACCCT--TTCACCTCTGCAATAGGCTAAATGTCAGGA-TATTTT-ACGAAACTT-AGCAATTACAGTT---CAT----------GCATATTGTAAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAACAAAAACA----AA----AGT-TT--TTACAC-GAATAAATGACGAACTCATTTCT-T-----------G-TA------TA-ATTA-ATA-CACA-------------------AAT---GTAAA--CAAA-CA----TGG----A-CTATATCAAAAC--GACCGTTCGTTGT---TATGATG--AAAACACTGTTTTatgtgtttgaga
gi|16 : CTTCGCAGAG--TAATCGTTTGTTACACTCA--TTCACCTCTGCAACCGGCTTAATGTCAAGA-TTTTTG-ACGAAA
gi|16 : tcAAACAACACAA-CCC--AACCAAT--CGTCACTGTTTTACATTAG-AA-CAAAAAT---AACA----AAGC--AGA-TT--TTACAC-GAATAAATGACAGACTATTTTCT-T-----------G-TG------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGAGTAAT-ACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattaaacaacacaacccaaccaatcgtcactgttttacattagaacaaaaataacaaagcagattttacacgaataaatgacagactattttcttgtgttttttttacgcagagcgatttcccgagtaatac
gi|17 : tccttcgcagagtaatcgtttgttacactcattcacctctgcaaccggcttaatgtcaagatttttgacgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattCAGAG--TAAACGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAAATTC--GA-TTTTTG-ACGAAATGT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGCTAAAA-TCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACTATAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATACATGATGAACTATTTTCT-T-----------G---------CT-GTTT-TTA-CACAGATC--GATTT-CCTGATTAAT-TCGC
gi|18 : cctTACAGACAAAAAAAACGT-GACAAGCGTTGTTT--TCAATGACGC-GGAAGCC-A-ATAT--G-AA-A-TGG--CAGAGATC-----ATGTGAC-T----------GAAA------------A-GTCAAGTCAAGCCGAAAGTAATCAG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
gi|19 : ccctgttatacttgtttataaaagtaaaaaccatccgagttagattttaaccatttaatttttaaaatatcttgttattaaatgcATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGAGATAACAATCGAGATTCC--CTATTATATTTGGCGAGAGGAAAGA-GAGGCGTAATTGTCAATGTGCCTGTAGGATTCGGGAAatgtgttagag
gi|19 : AGTGATC-----ATGTGAC-T----------GGAA------------T-GTCACGTGAAGTCGAAAATTGTCCG-GAGC----TGATGG--TA--GAGGTGAATGTAATGAGTGGAaagcattcttttattttcagagtgatcatgtgactggaatgtcacgtgaagtcgaaaattgtccggagctgatggtagaggtgaatgtaatgagtggaatgtcttagag
gi|2 : atcaacacgatcgttcgttgttatgatgaaaacattgttttaagagataacaatcgagattccctattatatttggcgagaggaaagagaggcgtaattgtcaatgtgcctgtaggattcgggaaaagcattcttttattttcagTCGCATAG--TTATTGTTCATTACACTCA--TTCACCTCAGTAACAGGCTAAACGTCATG--TTTTTT-ACGAAACTA-AGTAATTACACTAAAATATGAAGTTGTAAGCATACTGTAAAAA-TCAAACAACACAA-CTTAACACAAAT--TATCCCTACTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AAC-TT--TTCCAA-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TG-TTTT-T-A-CGCAGAGC--GATTT-CCAGGTTAAT-AAGTAAATATAAA-CAAACATGG----A-AGATATCAACAC--GTTC-TTTATTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAACATGATGTC--CTATTGTATTTGGCGAGTAACAATA-GATAGTTAACTGTAAGTTTGCCTGTTGAATACGGGAATTGTTAAGAGTTTGCTGTACAGACTTAACA---GCTGACGAGTGTTGTTT-----GTAGCGT-GAAAGCCTT-TT-T--G-GA-A-TGA--CAGTGGTC-----ATGTGAC-T----------GGAA------------A-GTAACGTGAAGCCGAAAATAGTTCA-GAGC----CACTGA--CA--GGGGTAAATGTAA-GAGTCAAatgtcttagag
gi|20 : ccgTTCGCAGAGAGTTATCGTTCGTTACACTCA--TTCATCTCTGCAACAGGCTAAATATCAGGAATTTTTA-ACGAAACTT-AGTTACTACAGTT---TATGCAGTTGTACGCGTATTGCTTAAA-CCAGACAACACAA-CTAGAAACAAAT--CATCCTTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTATAT-AAATAAATGATGGACTATTTTCT-T-----------G---------CT-GTTT-TTA-CACAGAGC--AAatgtgttagaaa
gi|21 : tTCGTAGAG--TTATCGTTCGTTGCACTCA--TTCACCTCGGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTTCAGTAATTTCAGTT---TAAGCAGTTGTAAGCATATTGTTCAAC-GCAGACAACAAAA-CTAGAAACAAAT--CATTACTATTTTACATTAG-AA-T-AAAAC---AACAGTTGAAGC--AGA-TT--TTACAC-GAATACATGTTGAACT-TTT-----------------TTT------CT-TTTT-TGA-CGCCGAG
gi|22 : TCGGCGAGCAGAAAGA---TATTTAATTGTCAATTTGT-------ATACAGGAAGGATTAGGAGTTTGCTGTACAGACAAAACA---TTTGACAAGCCTTGTTT--TCAATGGCAT-AGATGCC-ATTT-T--G-AA-A-TGG--TAGTTATT-----ATGTGAC-A----------GGAA------------A-GTCATGTGAAGACAAAAGTAGTCCG-GAGCCATGCAATGA--CA--GAGTTGAAACTAATGCATCG
gi|23 : CAGAG--TTATTGTTCGTTACACTAA--T--------GCAGCAGGCTAAATATCAGGA-CTTTTG-ATGGAACTT-A-------CAGTG---GATGCAGTTG----CTTATTATTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAGAAA-AAAAAAC---ATCA----AAGC--ATA-AT--TTACATAGAATGAgatgtgttagaga
gi|23 : tT-TTA-CATAGAAT--GATTT-CCCGATTAAT-AAGCAAATGCATA-CAAACATGG----A-Atttcccgattaataagcaaatgcatacaaacatggaa
gi|24 : tcagagttattgttcgttacactaatgcagcaggctaaatatcaggacttttgatggaacttacagtggatgcagttgcttattattaaaaccagacaacaaaactagaaacaaatcatcactattttacattagaaaaaaaaacatcaaagcataaTGCTG--CAGACAAAACA---GT-----AGCATTGTTC--TTAATGGCGG-AGAAGCC-A-TT-TT-G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------AGAA------------A-GTCACGTGAAGCCGAAAGTAAT
gi|25 : ttataaaaccattcctaccatctaattaatagaatctcgtattggcagGCGT-AGAAGCC-A-TT-T--T-GA-A-CTG--CGCTGATC-----ATGTAAT-TTAAACGTAACGGAATGTGCGATTACAACGTTATGTGAAGTCGAAATTATTT---GAGC----CAATGA--CA--GAGGTGAATATAatttagtatata
gi|26 : caTACAGACAAAACA---GTTGACGAGC--TGTTT--TCAATGACGTGGGAAGTC-A-CG-T--G-AA-tgtatattgagttgactctgatagagtg
gi|26 : gaatctggtactgtcaatgcTGACGT----------GGGA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GCAC----CAATGG--CA--GGGGTGAATGTAATGAGTGGAgccgaaagtagtccggcaccaatggcaggggtgaatgtaatgagtggaatgtgttagagagtg
gi|27 : gaatctggtactgtcaatgctacagacaaaacagttgacgagctgttttcaaGGGATAAACAACGTGATGCC--CTGCTGTTTTTGTCGAGCAGAAAGG-GAGAAACAATTGTCA-TT----TATAGAAT-CTCGTATTGTCAA-----TGC--TACAGACGAAACA---GTTGACGAGCGTTTTTTCCCCAATGatgtgttagagagtg
gi|28 : T-T--G-AA-A-TGG--CAGTGATC-----ACCTGAC-T----------GGAA------------A-GTCCCGTGAAGCCGAAAATAGTCCG-GAGC----CAATGAATGA--CAGGTGAATGCAATGTGACGA
gi|29 : -A-TT-T--G-AA-AATGG--CAGTGACC-----ATGTGAC-T----------GGAG------------A-GGTACGTGAAGCTGAAAGTAGTCCT-GAGC----CAATCA--CA--GAGATCAATGTAATGAGTCGAatgtgttaaatagag
gi|3 : TCGCAGAG--TTACCGTTTATTACAATAC--TTTACCTCTGCT---GGCTAAACGTCAGGA-TTGTTT-ACGAAACTT-TGTAAATACAGTT---TATGCAGTTGTAAGCATATTGTTAAAT-TAATATATCAAAA-CAAAAAACAAAT--CAGCATTATTTTAAATCAG-AA-CCAAAAC---AACA----AAGC--AAC-TT--TTACAA-TAATAAATAATGAACTGTTTTCT-TCTTTTAAAATAGTTTATATTATT-TCTT-CT--------------TTT-TCCGATTAAT-ACGCAAATTTAAA-CAAACATGA----A-AGATAT-AACAC--GATC-TTCATTGT---TATGATG--AAAACATTGATTTTAGGGATACACAGCGTGATGTC--CTGTTATATTTGGCGAGCAGACAGA-TATATTTAATAGTCAGTTTGCCTGTCGG--------ACGGTTAGGAGTTTGCTGTACAGATAAAACA---TTTGACGAGCGTTGTTA--ACAATAGTGT-GGAAGCC-ATTT-T--G-AA-A-TGA--CAGTTATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTACG-GAGC----CAGTGA--CA--GAGGTCAATGTAATGAGTCGActgtgttgga
gi|30 : -A-TGG--CAATGATC-----ATGTGAC-T----------GGAA------------A-GTCAAATAAAGTCGCAAGTAGTCCG-GAGC----CAACGA--CA--GAGGTGAATATAATGAGTCatgtgctagag
gi|31 : aaatCTTCACATAG--TTATCATTTGTTACACTTG--TTCAACTCTGCAACAAGCTAAATGTCATGA-TTTTTG-ACGAAACTtatatattagaga
gi|32 : CTCCGCCGAG--TTATCG-TCGTTACACTCAC-TTCA
gi|32 : cGTGAATGTAATGAGTCGAatgtgaatgtaatgagtcgaatgtgttagagagtg
gi|33 : cctccgccgagttatcgtcgttacactcacttcaat-T--G-AA-A-TGG--CAGTGATA-----ATGTGAC-T----------AGAA------------A-GTCACGCAAAGCTGGAAGTAGTCCG-GAGC----CAAatgtgttagagagtg
gi|34 : TCATGTGA--CTGAAA--AGTCCG-AAGC----CAAT--------GAAGTGAATGTTATGCGTCGA
gi|36 : CTTCGCAGAG--TTATCGTTCGTTACACCCG--TTCAatgtgcttgag
gi|4 : cCTTAGCAGAG--TTGTCGTTCGTTACACTCA--TTCACCTCCGCAACAGGCTAAACGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT----ATGCAGTTGTAAACATATTGTTAAAA-CCAGACAACAAAA-CTAGGAA-AAAT--CATTACTTTTTTACATTAG-AA-CAAAAGC---AACA----AAGC--AAC-TT--TGACAA-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTTGTTA-CGCAGAGC--GATAT-CCCGATTAAT-ACGCAAATTTAAA-CAAATATGG----A-AGATATCAATGG--AATC-TTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATTCC--CTATTATATTTGGCGAGCAGAAAGA-TATATTTAATTGTCAGTTTTCCTGTCGGATACAGGAATGATTAGGAGTTCACTTTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGTAGT-GGAAGCC-A-TT-T--G-AA-A-TGA--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCAAAAGTAGTCCG-GAGC----CAATGA--CA--GAGG-GAATGTAATGAGTAGA
gi|5 : tTTCGCAGAG--TAATCGTTTTTTACATTCA--TTCATCTCTGCAACAGGCTAAATGTCAAGG-GTTTTC-ACAAAACTT-AGTAATTACAGTT---TTTGCAGTTGTAAGCATATTGTTCAAA-CCAGACAACACAA-CTCAAAGCAAAT--CGTCCCTATTTCACATTAG-AA-CTAAAAC---GAAA----AAGC--AAC-TT--TAACAT-GAAT--------AACTACTTTC------------------------AT-TTTT-TTA-CGCATAAC--AATTT-CCCGATTAAT-ACTTAAATGTAAA-CACACATGG----A-AGATA-CTACAC--GATC-TTCGTTGT---TATGATG--AAATTATTGTTTTAAGGGATAAACAGCGTGTTGTC--CTGTTATACTTGGTGACCAGAAAGC-GATATTTCATTGTCAGTTTGCCTGTTGGATACGGAAACGGTTAGGATGTTGCTGTACAGACAAAAAA---TTTGACGAGTATTGTTT--TCAATTGCTT-TTCATTC-ATTT-T--G-AA-A-CGA--CAGTG-TC-----A-------T----------GAAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGG--CA--GACGTAAATCCACTGAGTCGA
gi|6 : TCGCAGAG--TTATCATTCGACACACTCA--TTCACCTCTGCAATAGGGTTAATATCAGGA-TTTGTG-ACGAAACTT-A-------CAGTT---TATGCCGTTGTAAGCATATTGTTAAAA-CCAGCTACCAAAAACAAGAAACAAAT--CATCACTATTTTACATAAG-AA-CAAAAAC---AACA----AAGC----C-TCAATTACAA-GAATAAATTATGATC-ATTGTCTGT-----------GTTT------TT-TTGT-TC--CGTATAACACGATCT-CC--GTTGTT-AT---AATG---A--AAACATTGTTTTA-AGGGATAAACAN--NNNNNNNNNNNNN---NNNNNNN--NNNNNNNNNNNNNNNGG--------------TGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATAATTAATTGTCAGTTTGCCTGTTGGATA--------ATTAGGAGTTTGCTGTACAGATAAACGA---TTTGACTAGCGTTGTTT--TAAATGGGGT-GGAA-CC-A-TT-TTTA-AATA-TGG--CAGTGATC-----ATGTGAC-T----------GCGA------------A-GTCGTGTGAAGCCGAAAGTAGTACA-GCGC----TAATGA--CA--GAGGTGAAAGTAATGGGTCGacgtgttagag
gi|7 : cCTTCACAGAG--TTATCGTTCATTACACTCA--TTCACGTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTAAAGTT---TATTTAGCTGTAAGGATATTGTT--------------AATG-CTAGAAACAAAG--CATCACTATTTTACATTAG-AA-CAAAA-----AACA----A--C--AAC-TT--TTGCAA-GAATAAATGATGAACTATTTTC--------------GTGT------TG-TTTT-TTA-CACAGAGC--GATTT-CCCGATTTAT-ATGCAATTGTAAA-CAAATAT-G----A-AAAGATCAACAC--AATC-TTCGTTGT---TATGATG--AAAACCTTGTTTTAAGGGATAAACCGCATGATGCC--CTGTTATTTTTGGTGACCAGAAAGA-GAGATTTAATTGTCAGTTTGCCTGTTGGATACAGGATGGGTTACGAGTTT-CTGTACAGACGAAACA---GTTGAAGAGCATTGTTT--TCAATAGGGT-G---------------G-AA-A-GGGTACAATGATC-----ATGTAAT-T----------GGAA------------A-GTCAAGTTAAGCTGAAAGTAGTACG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTGGAcgtgtgttagagac
gi|8 : TTCGCAGAG--TTATCGTTCGTTACACTCT--TTCACCTCTGCACCTGGCTCAATGTCAGGA-TTTTAG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTGAGCGTATTGTTAAAC-CCAAACAACACAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AAAA----AAGT--AGC-TT--TTACAC-GAATTAATTATGAACTATTTTCT-T-----------A--T------GT-TTTT-CTA-AGCAGAGC--GATTT-CCCGACTAAT-ACGCAAATGTAAA-CAAACATTG----A-AGATATTAACAT--GATCGTTCGTTGT---TTAGATG--AGAACATTGTTTTAAGGAATAAATAGCGTGATGatgtgttag
gi|8 : TGGCGT-GGAAGCC-A-TT-T--TTAA-A-TGA--CAGTGATC-----A----------------------------------------CGTGAAGCCGAGAGTAGTGCA-GAGT----CAATGA--AA--GAGGTGAATGTAATGAGTacgagcagaaattataacttatttataaaactacccgattgtaatttcctaaactttaatttaaagaatctcgcatgtattggcgtggaagccatttttaaatgacagtgatcacgtgaagccgagagtagtgcagagtcaatgaaagaggtgaatgtaatgagtaaatgtgttaaagag
gi|9 : ttcgcagagttatcgttcgttacactctttcacctctgcacctggctcaatgtcaggattttagacgaaacttagtaattacagtttatgcagttgtgagcgtattgttaaacccaaacaacacaactagaaacaaatcatcactattttacattagaacaaaaacaaaaaagtagcttttacacgaattaattatgaactattttcttatgtttttctaagcagagcgatttcccgactaatacgcaaatgtaaacaaacattgaagatattaacatgatcgttcgttgtttagatgagaacattgttttaaggaataaatagcgtgatgacgagcagaaattataacttatttataaaactacccgattgtaatttcctaaactttaatttaaagaatctcgcatgtatCATAG--TTATCGTTCGTTACACGCG--TTCACCTCTGCAACAGGCTAAGTGTCAGGA-TTGTTG-ACGAAAGTT-AGTAATTAAAGTT---TATGCAGTTGTAAGCATATTGTTAGAA-CCAGATACCAAAA-CTAGAAACAAAT--CGTCACTATTTTACATTTT-AA-CAAAAAC---AACA----AAGA--AAC-TT--TTACAA-GAATAAATGATGA-CTATTTT--------------------------T-TTTT-TTA------------------------AAT---GCAAATGTTAA-CAAACATGG----A-ATATATCAACAC--GATC-TTCGTTGT---TATGACG--AAAACATTGTTTTACGGGATACACAGCGTGATACC--CTGTTACATTTAGCGAGCAGAAAGA-CATATTTAATTGTCAGTTTGCCTGTTGG--------ACGGTTCGGACTTTGCTGTACAAATAAAACA---TTTGATGAGCGTTGTTT--TCAATGCCG--------C-A---------AA-A-TGG--CAGTGATC-----CTGTGAC-C----------GGAA------------A-GTCACTTGAAGCCGAAAGTAGTACG-GAGT----CAATGA--CA--GAGGTGAATGTAATGAGTCGAaaatgtgttaaagag
blockSeqs : AG C A G C AAA A A A . A T AAA GTTG . G AA TA G CTTTTAAAATAGTTTATATTAT G G . AC A . . TTTT T CC G AAA TC T T . G TCGGGA T AAC CC G T T A TT T T A TA . G TAAACGTAAC TGTGCGATTACA C T CATG AT TT
blockSeqs : . . . T . . A . . . . . . . . . . C . GTTTGTT . . . . . . . . . . G . . T A . A ACGGGA G . . . . T . T . . . . . . . . . . . . .
blockSeqs : . . . T . . A . . . . . . . . . . A . GTTTT . . . . . . . . . . G . . T A . G ACAGGA T . . . . T . T . . . . . . . . . . . . .
blockSeqs : . . . T . . A . . . . . . . . . . C . GTTTG . . . . . . . . . . G . . T A . G ACAGGA C . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . A . . . . . . . . . . C . ATGTA . . . . . . . . . . G . . A A . G ACGGAA T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . A . . . . . . . . . . C . GTTTT . . . . . . . . . . G . . T C . T ACAGGA C . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . T . . . . . . . . . . C . GTTTT . . . . . . . . . . N . . T A . T CTCGT G . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . C . . . . . . . . . . C . GTTTT . . . . . . . . . . G . . N A . G ATGG C . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . A . . . . . . . . . . A . GTGTT . . . . . . . . . . . . . T A . G A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . A . . . . . . . . . . T . GTAT . . . . . . . . . . . . . T A . G . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . A . . . . . . . . . . C . GTGT . . . . . . . . . . . . . T C . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . C . . . . . . . . . . A . TTTC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . A . . . . . . . . . . A . ATG . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . C . . A . . . . . . . . . . T . GC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . A . . . . . . . . . . A . GC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . . . . . A . A . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . .
blockSeqCons : ** G* ** ** C* GTTTT***************** ** G* *****
originalCons : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGGCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
finalCons : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-TGTTTT-----------------T-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGAG-ATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGGCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): GCATTAAAATGTTTCATTTCCATTTAAATATAGAAAACATCTGATTCAAAATCACCAA
Alignments
lowQualScore : 2222222222222222222222 1
lowQualScore : 22 44 2 22 2 0 333 1 2 2 22 2 2 333 4444 22 2 22 66 2 7777777777777777777777 2 2 2 0 33 2 0 2 2 0 5555 2 0 33 4 444 33 3 1 0 44 33 0 555555 3 444 0 33 2 2 6 1 66 1 1 1 22 44444 1 7777777777 999999999999 1 1 4444 22 22
lowQualScore : .. .. . .. . . ... . . . .. . . ... .... .. . .. .. . ...................... . . . . .. . . . . . .... . . .. . ... .. . . . .. .. . ...... . ... . .. . . . . .. . . . .. ..... . .......... ............ . . .... .. ..
lowQualScore : 55 33 0 88 2 1 999 4 2 1 99 1 1 777 5555 99 1 99 55 2 1111111111111111111111 2 1 1 3 11 4 7 4 5 4 3333 5 1 44 1 444 44 2 4 6 22 99 2 888888 9 777 8 44 4 2 7 9 44 9 8 9 66 55555 7 6666666666 333333333333 8 9 0000 66 66
consensus : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGGCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
Reference ( family-2167 ) : NCTTCGCAGAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGTTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATATTTAATTGTCAGTTTGCCTGTTGGATACGGGAACGGTTAGGAGTTTGCTGTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGGCGT-GGAAGCC-A-TT-T--G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
gi|1 : CTTCGCAGAG--TTATCGTTCATTACACTCACATGTACTTCTGCAACGGGTTACATGTCAGGA-TTTTTTTACGAAACTT-AGCAATTACAGTT---TATGATGATGTAAGCATATAGTTGAAA-CCAGACAATAAAA-CTAGAAAATAATAGCA--ACTCTCTTACATTTA-AA-CACAATA---GACA----ATGCATATA-TT--TTACA---AGTAAATGATGAACTAT----T-T-----------G--T------TT-ATAT-TTAGCGCAGAGC--GGTT----------ATAACGCCGAAGTAAATTAAACAT---------------------------------GT---CATGATG--TAAACATTGTATTAACGGATACACAGCGT--TGACATCTGTAATGTTTGATCATCAAAAAAAGGAGATGTATTTCTCAGTTTGTCTGCT-GATACAGGAA
gi|1 : c--TTAACGAGGT-AAAAGCC-T-TT-T--G-AA-A-TG---CAGTGATCAGATCATGTGAC-T----------Ggagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaaatgcagtgatcagatcatgtgactgaaacgtcactggtcatgttacctaaaaatcacatggagccgaaagtagtccggagcctatgacagaggtgaatgtaatgagtcgactgtgttagaga
gi|1 : ccttcgcagagttatcgttcattacactcacatgtacttctgcaacgggttacatgtcaggatttttttacgaaacttagcaattacagtttatgatgatgtaagcatatagttgaaaccagacaataaaactagaaaataatagcaactctcttacatttaaacacaatagacaatgcatatattttacaagtaaatgatgaactatttgtttatatttagcgcagagcggttataacgccgaagtaaattaaacatgtcatgatgtaaacattgtattaacggatacacagcgttgacatctgtaatgtttgatcatcaaaaaaaggagatgtatttctcagtttgtctgctgatacaggaagagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaa-T--G-AA-A-CGT--CACTGGTC-----ATGTTAC-C----------TAAA------------A-ATCACATGGAGCCGAAAGTAGTCCG-GAGC----CTATGA--CA--GAGGTGAATGTAATGAGTCGAaaacgtcactggtcatgttacctaaaaatcacatggagccgaaagtagtccggagcctatgacagaggtgaatgtaatgagtcgactgtgttagaga
gi|10 : ccttcgcagagttatcgttcattacactcacatgtacttctgcaacgggttacatgtcaggatttttttacgaaacttagcaattacagtttatgatgatgtaagcatatagttgaaaccagacaataaaactagaaaataatagcaactctcttacatttaaacacaatagacaatgcatatattttacaagtaaatgatgaactatttgtttatatttagcgcagagcggttataacgccgaagtaaattaaacatgtcatgatgtaaacattgtattaacggatacacagcgttgacatctgtaatgtttgatcatcaaaaaaaggagatgtatttctcagtttgtctgctgatacaggaagagtattatttttaatttactaccaaaacttatatgaggaaaaaaacattgtgtgtactggtcatttctctgccaacaattaattaacgaggtaaaagccttttgaaatgcagtgatcagatcatgtgacCTTTACAGAG--TTATCGTCTGTTACACTCA--TTCACCTCTGCAACAAGCTAAATATCAGG--TTTTTG-ACGAAAATG-AGTAATCACAGTT---TATGCACTTGTAAGCATATTGTT-------------TAAAA-CTAGAAACACAT--CGTCACTATTTTACAT-AG-AT-CAAAAAC---AACA----AAGG--AGC-TT--TTACAC-AAATAGATGATTTACTATGCTCT-T-----------GTTT------TT-TT-----A-CACAGAGC--AATTT-CTTGATTAAT-AGGCAAATATAAA-CAAACATGG----A-AGATATCAACAC--GATTGTTTGTTGTAAATATAATATCAACACGTTATctgtgttagaga
gi|10 : tcAGACAAAA-----GTTGATGAGCGTTGTTT---CAATGGCGT-GGAAGCC-A-TT-TT-G-TA-A-TGG--TAGTGATC-----ATGTG---------------------------------TCACGTGAAGTCGAAAGTAG-CCGTGAGT----CAATGA--CA--GAGTTGAATGTAATGAGTCGAcatctaataacaattataaaaccatccaattgtgatttcctaccatttaatttatagaattttgtattgtctaagacaaaagttgatgagcgttgtttcaatggcgtggaagccattttgtaatggtagtgatcatgtgtcacgtgaagtcgaaagtagccgtgagtcaatgacagagttgaatgtaatgagtcgaatgtgttagaga
gi|11 : tcctttacagagttatcgtctgttacactcattcacctctgcaacaagctaaatatcaggtttttgacgaaaatgagtaatcacagtttatgcacttgtaagcatattgtttaaaactagaaacacatcgtcactattttacatagatcaaaaacaacaaaggagcttttacacaaatagatgatttactatgctcttgtttttttacacagagcaatttcttgattaataggcaaatataaacaaacatggaagatatcaacacgattgtttgttgtaaatataatatcaacacgttatcatctaataacaattataaaaccatccaattgtgatttcctaccatttaatttatagaattttgtattgtctaCTTCGCAGAC--TTACCGTTCGTTACACTCA--TTCACCTCTGCGACAGGC----------------------GAAACTT-AATAAATACAGTT---CATGCAGTTGTAAACATATTGTTAAAAACCAGACAACAAAA-CTAGAAACAAAC--CATCACTACTTTAAATTAG-AATCAAAAAC---AACA----AAGC--AGC-TT--TTACAA-GAATAAATGATGCACTGTTTTTT-T-----------GTTT------GT-TTT----A-CGCAGAAA--GATTTACCCGAGTAAT-GCGCAAATGTAAA-CAAACATGG----A-ATATATCAACAC--GATCGTTTGTTGT---TATGATG--AAAACATTG-TTTAAGGGATATACA--------CC--GTATTATACTTGatgtgttagaga
gi|11 : cTACAAACAAAACA---GTTGAAAAGTTTTGTTT--TCAATGGTGT-GGA--C-------------A-A-TGG--CAATGTTC-----ATGTGAC-T----------GGAT------------A-GTtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgttacaaacaaaacagttgaaaagttttgttttcaatggtgtggacaatggcaatgttcatgtgactggatagtggtcaatgtaatgagtcgaatgtgttaggga
gi|11 : ccttcgcagacttaccgttcgttacactcattcacctctgcgacaggcgaaacttaataaatacagttcatgcagttgtaaacatattgttaaaaaccagacaacaaaactagaaacaaaccatcactactttaaattagaatcaaaaacaacaaagcagcttttacaagaataaatgatgcactgtttttttgtttgttttacgcagaaagatttacccgagtaatgcgcaaatgtaaacaaacatggaatatatcaacacgatcgtttgttgttatgatgaaaacattgtttaagggatatacaccgtattatacttgtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgtGA--TA--GTGGTCAATGTAATGAGTCGAggtcaatgtaatgagtcgaatgtgttaggga
gi|12 : ccttcgcagacttaccgttcgttacactcattcacctctgcgacaggcgaaacttaataaatacagttcatgcagttgtaaacatattgttaaaaaccagacaacaaaactagaaacaaaccatcactactttaaattagaatcaaaaacaacaaagcagcttttacaagaataaatgatgcactgtttttttgtttgttttacgcagaaagatttacccgagtaatgcgcaaatgtaaacaaacatggaatatatcaacacgatcgtttgttgttatgatgaaaacattgtttaagggatatacaccgtattatacttgtttataaaaccatccgattgtgaatacctaccatttaatttatagaaactcgtattttcaatgttacaaacaaaacagttgaaaagttttgttttcaatggtgtggacaatggcaatgttcatgtgactgTTCGCAAAG--TTATCGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAATGTCAGGA-TTTTTT-ACTTAACTT-AGTAATC-CAGTT---TATGCAGTTGTAAACATATTGTGAAAA-GCAGACAACAAAA-TTAGAAACAAAG--CACTACTATTTTACATTAG-AA-CAAAAAC--------------C---GC-TT--TTACAC-GAATAAATGATGAACTATTT-CT-T-----------GTTTGT----TTGTTTT-TTA-CGCAGAGT--GATTT-CCCGATTAAT-ACGCAAATGTAAG-CAAACATGG----A-AGATATCAAAGC--GATCGTTCGTTGT---TTTAATA--ACAAatgtgttaggga
gi|13 : G--TTTTCGTTCGTTACACACA--ATCACTTATG-----GGCTTAATGTCAAGT-CGTTTT-ACGA--------TAA--ACAGTT---TATACAGATG-AAGATTATTGTTAAAA-CCAGACAACGAAA-CAAGAAA---A---CAT-A-TATTTTACA--AA-AA-CAAAAAC---AACA----AAGC--AGCGTT--TTACGC-ATATAAATGATGAACTATTTTCT-T-----------ATGT------AT-TTTT-ATA-C--AGAGC--GATAT-CCCGATTAAT-ACGCAAATGTAAA-CAAACATGG----A-AGATAGCAGTAC--GATCGTTCGTTGT---TATGACG--AAAACATTG-------------ACAATGTGATCCC--CTATTTTATTTGGCGAGCAGAAATG-GAGATTTAttctaacttgtttataaaaccatccgattgtgatttcctaacatttaatttaaagaatctg
gi|14 : -CAAAGATAA----ATAAATA-CAACGCCCAATT-TTTGTT-T---TATT-TG--AAGAAATTG---------ATAAACAGCGTGAAGCC--CTGTTATAGTTGGAGAGCAGAAAGA-AATATCTAATTGTCAGTTTGCCTGTTGGATATGG--ATGGTTAGGAGTTTGCTGTTCATACAA--------T--ACGAGTGTTGTTT--TCAAT-GCGT-GGAAGCC-A-TT-T------------------------------TGAA-T----------GGAA------------A-GTCACGTGAAGCTTAAAGTAGTCCA-GAGC----CAGTGC--CATTAAGATAAATGTTATGAGTCAA
gi|15 : caaaaagaaaaaacattttcgttcgtaccttcaaatattttttgcTCGCAGAG--TTATCGTTCGTTACACCCT--TTCACCTCTGCAATAGGCTAAATGTCAGGA-TATTTT-ACGAAACTT-AGCAATTACAGTT---CAT----------GCATATTGTAAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAACAAAAACA----AA----AGT-TT--TTACAC-GAATAAATGACGAACTCATTTCT-T-----------G-TA------TA-ATTA-ATA-CACA-------------------AAT---GTAAA--CAAA-CA----TGG----A-CTATATCAAAAC--GACCGTTCGTTGT---TATGATG--AAAACACTGTTTTatgtgtttgaga
gi|16 : CTTCGCAGAG--TAATCGTTTGTTACACTCA--TTCACCTCTGCAACCGGCTTAATGTCAAGA-TTTTTG-ACGAAA
gi|16 : tcAAACAACACAA-CCC--AACCAAT--CGTCACTGTTTTACATTAG-AA-CAAAAAT---AACA----AAGC--AGA-TT--TTACAC-GAATAAATGACAGACTATTTTCT-T-----------G-TG------TT-TTTT-TTA-CGCAGAGC--GATTT-CCCGAGTAAT-ACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattaaacaacacaacccaaccaatcgtcactgttttacattagaacaaaaataacaaagcagattttacacgaataaatgacagactattttcttgtgttttttttacgcagagcgatttcccgagtaatac
gi|17 : tccttcgcagagtaatcgtttgttacactcattcacctctgcaaccggcttaatgtcaagatttttgacgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttcatgtagtattCAGAG--TAAACGTTCGTTACACTCA--TTCACCTCTGCAACAGGCTAAAATTC--GA-TTTTTG-ACGAAATGT-AGTAATTACAGTT---TATGCAGTTGTAAGCATATTGCTAAAA-TCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACTATAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTACAC-GAATACATGATGAACTATTTTCT-T-----------G---------CT-GTTT-TTA-CACAGATC--GATTT-CCTGATTAAT-TCGC
gi|18 : cctTACAGACAAAAAAAACGT-GACAAGCGTTGTTT--TCAATGACGC-GGAAGCC-A-ATAT--G-AA-A-TGG--CAGAGATC-----ATGTGAC-T----------GAAA------------A-GTCAAGTCAAGCCGAAAGTAATCAG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTCGA
gi|19 : ccctgttatacttgtttataaaagtaaaaaccatccgagttagattttaaccatttaatttttaaaatatcttgttattaaatgcATCAACAC--GATCGTTCGTTGT---TATGATG--AAAACATTGTTTTAAGAGATAACAATCGAGATTCC--CTATTATATTTGGCGAGAGGAAAGA-GAGGCGTAATTGTCAATGTGCCTGTAGGATTCGGGAAatgtgttagag
gi|19 : AGTGATC-----ATGTGAC-T----------GGAA------------T-GTCACGTGAAGTCGAAAATTGTCCG-GAGC----TGATGG--TA--GAGGTGAATGTAATGAGTGGAaagcattcttttattttcagagtgatcatgtgactggaatgtcacgtgaagtcgaaaattgtccggagctgatggtagaggtgaatgtaatgagtggaatgtcttagag
gi|2 : atcaacacgatcgttcgttgttatgatgaaaacattgttttaagagataacaatcgagattccctattatatttggcgagaggaaagagaggcgtaattgtcaatgtgcctgtaggattcgggaaaagcattcttttattttcagTCGCATAG--TTATTGTTCATTACACTCA--TTCACCTCAGTAACAGGCTAAACGTCATG--TTTTTT-ACGAAACTA-AGTAATTACACTAAAATATGAAGTTGTAAGCATACTGTAAAAA-TCAAACAACACAA-CTTAACACAAAT--TATCCCTACTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AAC-TT--TTCCAA-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TG-TTTT-T-A-CGCAGAGC--GATTT-CCAGGTTAAT-AAGTAAATATAAA-CAAACATGG----A-AGATATCAACAC--GTTC-TTTATTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAACATGATGTC--CTATTGTATTTGGCGAGTAACAATA-GATAGTTAACTGTAAGTTTGCCTGTTGAATACGGGAATTGTTAAGAGTTTGCTGTACAGACTTAACA---GCTGACGAGTGTTGTTT-----GTAGCGT-GAAAGCCTT-TT-T--G-GA-A-TGA--CAGTGGTC-----ATGTGAC-T----------GGAA------------A-GTAACGTGAAGCCGAAAATAGTTCA-GAGC----CACTGA--CA--GGGGTAAATGTAA-GAGTCAAatgtcttagag
gi|20 : ccgTTCGCAGAGAGTTATCGTTCGTTACACTCA--TTCATCTCTGCAACAGGCTAAATATCAGGAATTTTTA-ACGAAACTT-AGTTACTACAGTT---TATGCAGTTGTACGCGTATTGCTTAAA-CCAGACAACACAA-CTAGAAACAAAT--CATCCTTATTTTACATTAG-AA-CAAAAAC---AACA----AAGC--AGC-TT--TTATAT-AAATAAATGATGGACTATTTTCT-T-----------G---------CT-GTTT-TTA-CACAGAGC--AAatgtgttagaaa
gi|21 : tTCGTAGAG--TTATCGTTCGTTGCACTCA--TTCACCTCGGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTTCAGTAATTTCAGTT---TAAGCAGTTGTAAGCATATTGTTCAAC-GCAGACAACAAAA-CTAGAAACAAAT--CATTACTATTTTACATTAG-AA-T-AAAAC---AACAGTTGAAGC--AGA-TT--TTACAC-GAATACATGTTGAACT-TTT-----------------TTT------CT-TTTT-TGA-CGCCGAG
gi|22 : TCGGCGAGCAGAAAGA---TATTTAATTGTCAATTTGT-------ATACAGGAAGGATTAGGAGTTTGCTGTACAGACAAAACA---TTTGACAAGCCTTGTTT--TCAATGGCAT-AGATGCC-ATTT-T--G-AA-A-TGG--TAGTTATT-----ATGTGAC-A----------GGAA------------A-GTCATGTGAAGACAAAAGTAGTCCG-GAGCCATGCAATGA--CA--GAGTTGAAACTAATGCATCG
gi|23 : CAGAG--TTATTGTTCGTTACACTAA--T--------GCAGCAGGCTAAATATCAGGA-CTTTTG-ATGGAACTT-A-------CAGTG---GATGCAGTTG----CTTATTATTAAAA-CCAGACAACAAAA-CTAGAAACAAAT--CATCACTATTTTACATTAGAAA-AAAAAAC---ATCA----AAGC--ATA-AT--TTACATAGAATGAgatgtgttagaga
gi|23 : tT-TTA-CATAGAAT--GATTT-CCCGATTAAT-AAGCAAATGCATA-CAAACATGG----A-Atttcccgattaataagcaaatgcatacaaacatggaa
gi|24 : tcagagttattgttcgttacactaatgcagcaggctaaatatcaggacttttgatggaacttacagtggatgcagttgcttattattaaaaccagacaacaaaactagaaacaaatcatcactattttacattagaaaaaaaaacatcaaagcataaTGCTG--CAGACAAAACA---GT-----AGCATTGTTC--TTAATGGCGG-AGAAGCC-A-TT-TT-G-AA-A-TGG--CAGTGATC-----ATGTGAC-T----------AGAA------------A-GTCACGTGAAGCCGAAAGTAAT
gi|25 : ttataaaaccattcctaccatctaattaatagaatctcgtattggcagGCGT-AGAAGCC-A-TT-T--T-GA-A-CTG--CGCTGATC-----ATGTAAT-TTAAACGTAACGGAATGTGCGATTACAACGTTATGTGAAGTCGAAATTATTT---GAGC----CAATGA--CA--GAGGTGAATATAatttagtatata
gi|26 : caTACAGACAAAACA---GTTGACGAGC--TGTTT--TCAATGACGTGGGAAGTC-A-CG-T--G-AA-tgtatattgagttgactctgatagagtg
gi|26 : gaatctggtactgtcaatgcTGACGT----------GGGA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GCAC----CAATGG--CA--GGGGTGAATGTAATGAGTGGAgccgaaagtagtccggcaccaatggcaggggtgaatgtaatgagtggaatgtgttagagagtg
gi|27 : gaatctggtactgtcaatgctacagacaaaacagttgacgagctgttttcaaGGGATAAACAACGTGATGCC--CTGCTGTTTTTGTCGAGCAGAAAGG-GAGAAACAATTGTCA-TT----TATAGAAT-CTCGTATTGTCAA-----TGC--TACAGACGAAACA---GTTGACGAGCGTTTTTTCCCCAATGatgtgttagagagtg
gi|28 : T-T--G-AA-A-TGG--CAGTGATC-----ACCTGAC-T----------GGAA------------A-GTCCCGTGAAGCCGAAAATAGTCCG-GAGC----CAATGAATGA--CAGGTGAATGCAATGTGACGA
gi|29 : -A-TT-T--G-AA-AATGG--CAGTGACC-----ATGTGAC-T----------GGAG------------A-GGTACGTGAAGCTGAAAGTAGTCCT-GAGC----CAATCA--CA--GAGATCAATGTAATGAGTCGAatgtgttaaatagag
gi|3 : TCGCAGAG--TTACCGTTTATTACAATAC--TTTACCTCTGCT---GGCTAAACGTCAGGA-TTGTTT-ACGAAACTT-TGTAAATACAGTT---TATGCAGTTGTAAGCATATTGTTAAAT-TAATATATCAAAA-CAAAAAACAAAT--CAGCATTATTTTAAATCAG-AA-CCAAAAC---AACA----AAGC--AAC-TT--TTACAA-TAATAAATAATGAACTGTTTTCT-TCTTTTAAAATAGTTTATATTATT-TCTT-CT--------------TTT-TCCGATTAAT-ACGCAAATTTAAA-CAAACATGA----A-AGATAT-AACAC--GATC-TTCATTGT---TATGATG--AAAACATTGATTTTAGGGATACACAGCGTGATGTC--CTGTTATATTTGGCGAGCAGACAGA-TATATTTAATAGTCAGTTTGCCTGTCGG--------ACGGTTAGGAGTTTGCTGTACAGATAAAACA---TTTGACGAGCGTTGTTA--ACAATAGTGT-GGAAGCC-ATTT-T--G-AA-A-TGA--CAGTTATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCGAAAGTAGTACG-GAGC----CAGTGA--CA--GAGGTCAATGTAATGAGTCGActgtgttgga
gi|30 : -A-TGG--CAATGATC-----ATGTGAC-T----------GGAA------------A-GTCAAATAAAGTCGCAAGTAGTCCG-GAGC----CAACGA--CA--GAGGTGAATATAATGAGTCatgtgctagag
gi|31 : aaatCTTCACATAG--TTATCATTTGTTACACTTG--TTCAACTCTGCAACAAGCTAAATGTCATGA-TTTTTG-ACGAAACTtatatattagaga
gi|32 : CTCCGCCGAG--TTATCG-TCGTTACACTCAC-TTCA
gi|32 : cGTGAATGTAATGAGTCGAatgtgaatgtaatgagtcgaatgtgttagagagtg
gi|33 : cctccgccgagttatcgtcgttacactcacttcaat-T--G-AA-A-TGG--CAGTGATA-----ATGTGAC-T----------AGAA------------A-GTCACGCAAAGCTGGAAGTAGTCCG-GAGC----CAAatgtgttagagagtg
gi|34 : TCATGTGA--CTGAAA--AGTCCG-AAGC----CAAT--------GAAGTGAATGTTATGCGTCGA
gi|36 : CTTCGCAGAG--TTATCGTTCGTTACACCCG--TTCAatgtgcttgag
gi|4 : cCTTAGCAGAG--TTGTCGTTCGTTACACTCA--TTCACCTCCGCAACAGGCTAAACGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTACAGTT----ATGCAGTTGTAAACATATTGTTAAAA-CCAGACAACAAAA-CTAGGAA-AAAT--CATTACTTTTTTACATTAG-AA-CAAAAGC---AACA----AAGC--AAC-TT--TGACAA-GAATAAATGATGAACTATTTTCT-T-----------GTTT------TT-TTTTGTTA-CGCAGAGC--GATAT-CCCGATTAAT-ACGCAAATTTAAA-CAAATATGG----A-AGATATCAATGG--AATC-TTCGTTGT---TATGATG--AAAACATTGTTTTAAGGGATAAACAGCGTGATTCC--CTATTATATTTGGCGAGCAGAAAGA-TATATTTAATTGTCAGTTTTCCTGTCGGATACAGGAATGATTAGGAGTTCACTTTACAGACAAAACA---GTTGACGAGCGTTGTTT--TCAATGTAGT-GGAAGCC-A-TT-T--G-AA-A-TGA--CAGTGATC-----ATGTGAC-T----------GGAA------------A-GTCACGTGAAGCCAAAAGTAGTCCG-GAGC----CAATGA--CA--GAGG-GAATGTAATGAGTAGA
gi|5 : tTTCGCAGAG--TAATCGTTTTTTACATTCA--TTCATCTCTGCAACAGGCTAAATGTCAAGG-GTTTTC-ACAAAACTT-AGTAATTACAGTT---TTTGCAGTTGTAAGCATATTGTTCAAA-CCAGACAACACAA-CTCAAAGCAAAT--CGTCCCTATTTCACATTAG-AA-CTAAAAC---GAAA----AAGC--AAC-TT--TAACAT-GAAT--------AACTACTTTC------------------------AT-TTTT-TTA-CGCATAAC--AATTT-CCCGATTAAT-ACTTAAATGTAAA-CACACATGG----A-AGATA-CTACAC--GATC-TTCGTTGT---TATGATG--AAATTATTGTTTTAAGGGATAAACAGCGTGTTGTC--CTGTTATACTTGGTGACCAGAAAGC-GATATTTCATTGTCAGTTTGCCTGTTGGATACGGAAACGGTTAGGATGTTGCTGTACAGACAAAAAA---TTTGACGAGTATTGTTT--TCAATTGCTT-TTCATTC-ATTT-T--G-AA-A-CGA--CAGTG-TC-----A-------T----------GAAA------------A-GTCACGTGAAGCCGAAAGTAGTCCG-GAGC----CAATGG--CA--GACGTAAATCCACTGAGTCGA
gi|6 : TCGCAGAG--TTATCATTCGACACACTCA--TTCACCTCTGCAATAGGGTTAATATCAGGA-TTTGTG-ACGAAACTT-A-------CAGTT---TATGCCGTTGTAAGCATATTGTTAAAA-CCAGCTACCAAAAACAAGAAACAAAT--CATCACTATTTTACATAAG-AA-CAAAAAC---AACA----AAGC----C-TCAATTACAA-GAATAAATTATGATC-ATTGTCTGT-----------GTTT------TT-TTGT-TC--CGTATAACACGATCT-CC--GTTGTT-AT---AATG---A--AAACATTGTTTTA-AGGGATAAACAN--NNNNNNNNNNNNN---NNNNNNN--NNNNNNNNNNNNNNNGG--------------TGCC--CTGTTATATTTGGCGAGCAGAAAGA-GATAATTAATTGTCAGTTTGCCTGTTGGATA--------ATTAGGAGTTTGCTGTACAGATAAACGA---TTTGACTAGCGTTGTTT--TAAATGGGGT-GGAA-CC-A-TT-TTTA-AATA-TGG--CAGTGATC-----ATGTGAC-T----------GCGA------------A-GTCGTGTGAAGCCGAAAGTAGTACA-GCGC----TAATGA--CA--GAGGTGAAAGTAATGGGTCGacgtgttagag
gi|7 : cCTTCACAGAG--TTATCGTTCATTACACTCA--TTCACGTCTGCAACAGGCTAAATGTCAGGA-TTTTTG-ACGAAACTT-AGTAATTAAAGTT---TATTTAGCTGTAAGGATATTGTT--------------AATG-CTAGAAACAAAG--CATCACTATTTTACATTAG-AA-CAAAA-----AACA----A--C--AAC-TT--TTGCAA-GAATAAATGATGAACTATTTTC--------------GTGT------TG-TTTT-TTA-CACAGAGC--GATTT-CCCGATTTAT-ATGCAATTGTAAA-CAAATAT-G----A-AAAGATCAACAC--AATC-TTCGTTGT---TATGATG--AAAACCTTGTTTTAAGGGATAAACCGCATGATGCC--CTGTTATTTTTGGTGACCAGAAAGA-GAGATTTAATTGTCAGTTTGCCTGTTGGATACAGGATGGGTTACGAGTTT-CTGTACAGACGAAACA---GTTGAAGAGCATTGTTT--TCAATAGGGT-G---------------G-AA-A-GGGTACAATGATC-----ATGTAAT-T----------GGAA------------A-GTCAAGTTAAGCTGAAAGTAGTACG-GAGC----CAATGA--CA--GAGGTGAATGTAATGAGTGGAcgtgtgttagagac
gi|8 : TTCGCAGAG--TTATCGTTCGTTACACTCT--TTCACCTCTGCACCTGGCTCAATGTCAGGA-TTTTAG-ACGAAACTT-AGTAATTACAGTT---TATGCAGTTGTGAGCGTATTGTTAAAC-CCAAACAACACAA-CTAGAAACAAAT--CATCACTATTTTACATTAG-AA-CAAAAAC---AAAA----AAGT--AGC-TT--TTACAC-GAATTAATTATGAACTATTTTCT-T-----------A--T------GT-TTTT-CTA-AGCAGAGC--GATTT-CCCGACTAAT-ACGCAAATGTAAA-CAAACATTG----A-AGATATTAACAT--GATCGTTCGTTGT---TTAGATG--AGAACATTGTTTTAAGGAATAAATAGCGTGATGatgtgttag
gi|8 : TGGCGT-GGAAGCC-A-TT-T--TTAA-A-TGA--CAGTGATC-----A----------------------------------------CGTGAAGCCGAGAGTAGTGCA-GAGT----CAATGA--AA--GAGGTGAATGTAATGAGTacgagcagaaattataacttatttataaaactacccgattgtaatttcctaaactttaatttaaagaatctcgcatgtattggcgtggaagccatttttaaatgacagtgatcacgtgaagccgagagtagtgcagagtcaatgaaagaggtgaatgtaatgagtaaatgtgttaaagag
gi|9 : ttcgcagagttatcgttcgttacactctttcacctctgcacctggctcaatgtcaggattttagacgaaacttagtaattacagtttatgcagttgtgagcgtattgttaaacccaaacaacacaactagaaacaaatcatcactattttacattagaacaaaaacaaaaaagtagcttttacacgaattaattatgaactattttcttatgtttttctaagcagagcgatttcccgactaatacgcaaatgtaaacaaacattgaagatattaacatgatcgttcgttgtttagatgagaacattgttttaaggaataaatagcgtgatgacgagcagaaattataacttatttataaaactacccgattgtaatttcctaaactttaatttaaagaatctcgcatgtatCATAG--TTATCGTTCGTTACACGCG--TTCACCTCTGCAACAGGCTAAGTGTCAGGA-TTGTTG-ACGAAAGTT-AGTAATTAAAGTT---TATGCAGTTGTAAGCATATTGTTAGAA-CCAGATACCAAAA-CTAGAAACAAAT--CGTCACTATTTTACATTTT-AA-CAAAAAC---AACA----AAGA--AAC-TT--TTACAA-GAATAAATGATGA-CTATTTT--------------------------T-TTTT-TTA------------------------AAT---GCAAATGTTAA-CAAACATGG----A-ATATATCAACAC--GATC-TTCGTTGT---TATGACG--AAAACATTGTTTTACGGGATACACAGCGTGATACC--CTGTTACATTTAGCGAGCAGAAAGA-CATATTTAATTGTCAGTTTGCCTGTTGG--------ACGGTTCGGACTTTGCTGTACAAATAAAACA---TTTGATGAGCGTTGTTT--TCAATGCCG--------C-A---------AA-A-TGG--CAGTGATC-----CTGTGAC-C----------GGAA------------A-GTCACTTGAAGCCGAAAGTAGTACG-GAGT----CAATGA--CA--GAGGTGAATGTAATGAGTCGAaaatgtgttaaagag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): GCATTAAAATGTTTCATTTCCATTTAAATATAGAAAACATCTGATTCAAAATCACCAA