lowQualScore : 1111111111111111111111111
lowQualScore : 1 99999999999999999 2222 111 55555555 1 4444444444444444444444444 4444444444 11 111 11 222222222 222 1 111 111 2222222222 33 1 66666666666666666666666666666666666666666666666666666666 2
lowQualScore : 5 6 2 22222222222222222 6666 6 6 444 22222222 0 4444444444444444444444444 4 0000000000 3 4 6 7 88 6 7 666 1 6 6 6 0 11 8 77 777777777 8 000 1 2 6 6 9 2 6 000 000 1111111111 4 6 6 55 3 55 9 1 44444444444444444444444444444444444444444444444444444444 7
lowQualScore : . . . ................. .... . . ... ........ . ......................... . .......... . . . . .. . . ... . . . . . .. . .. ......... . ... . . . . . . . ... ... .......... . . . .. . .. . . ........................................................ .
lowQualScore : 0 0 5 55555555555555555 5555 0 0 555 00000000 5 0000000000000000000000000 0 5555555555 0 7 7 3 33 0 3 555 2 0 0 0 6 66 0 88 000000000 0 222 0 5 7 7 5 5 7 000 000 4444444444 4 0 0 00 3 66 0 7 55555555555555555555555555555555555555555555555555555555 5
consensus : NTTTTTTTCAAACTGGCCACGCNCCNCCCACGCGAGGCGGCGCGCCANTCTGATCTGAGTCGCTGAGNCGCTTATGGAAAAGTGAGNCAATAACAGAAATCTGT---CTGAAAGCATAAGCNTCTCCGTGACNTNGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATTTGCTCCATACGATAATGACGTCATATCCGTTGCCATAACTGTTGA-GGACAAAAAAAATACGCNGT-TTTTT-GGGAACCCAGTGCGA-CATCTTC-TTCAAACGGCCGANTTAT-GCATAA---AC---ATCGGTAC-G----ATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCAAGCTCCTGT
Reference ( gi|1 ) : CTTGTTTTCAAATTGGCCATGCCCCT--------AAGAA---CGCAATTCTGATCCGAATCGCTGAGGTACTTAAAGAAAAATAAAGCAATAACAGAAATCTGTTAGCTGAAAGCCTAAGCTTCTCCGTGACATTGATTGGAAGACGTTTA--AAATACAACGAATTTTAACCAATCAGACACGACCCCTTTTTTGCTCCATACAATAATGACATCATATCTGTTGCCATAAATGTTGA-GGATAAAAAAAATACACCAT-TTTAT-GGGAACTCAGTGCGA-CATCTTC-TTCAAACGGCAGAGTTAT-GCATAA---AC---ATCGCTAT-G----ATCTTGAAGATAAA-TCATTCAGCGACAGAATGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAAGGGGGGTCAACGTTTGTTTCTTTCGTT---GTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAAGCTCCTGTG
gi|5 : TTTTTTTCAAATTGGCCACGCCTCA--------AAGCG---CGCTAT-CTGATCTGAGTCGCTGAGGCGTTTA--------TGAGTCAATA---------------CTGAAAGCATAAGCATCTCCGTGACTTGGATCGGAAGTCGTTTA--AAATACAGCGAATTTTAACCAATCAGATACGACCCCGTATTTGCTCCATACGATAATGACGTCATATCCGTTGCCATAATTGTTAA-GGATAAAAAAAA-A-GCCGT-TTTTG-GGGAACTCAGTGCGA-CATCTTC-TTCAAACGGCCGAGTTAT-GCATAA---AC---ATCGGTAC-A----ATCTTGAAGATAAA-TCATTCAGCAATAGAACGAGA--CCGGGTTTGTT-AAA
gi|2 : tTTTTTTTCAAACTGACCACGCGCTTCCCACGCGAGGAAGCGCGCCAATCTGATCTGAGTCGCTGAGCCGCTTATGGAAAA
gi|3 : tAAAGTAAAACAATAACAGAAATCTGT-------------AAGCTT---------ATTGATAGGAAGACGTT-A--AAATACAGCAAATTTTAACCAATCAGACACGACCCCGTATTTGCTCTATACGATAATGACGTCATATCCGTTGCCATAAATGTTGA-GGAC-AAAAAAATACGCCGT-TTTTT-GGAAACTCAGTGCGA-CATCTTC-TTCAAACGGCTGAGTAAT-GCATAA---AC---ATCGGTAC-G----ATCTTGtttacagaatacagcgaatttaaccaatctgacacggcactgtatctgctccatacgataatgacgtaatatccgttgccagacccgttgacgatcaaaaactacgcagttttaaggaacccagtgcagtatcgtcttcaaaccgccgatttatgcataaacatcggtacgatcttgaagataaatcattcagcgatagagcgagaccgggtttgttaaaattgatgacctttcgactaagaaattctaattttgatcggttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcct
gi|2 : gtTGGAAAA--TTTACAGAATACAGCGAATTT-AACCAATCTGACACGGCACTGTATCTGCTCCATACGATAATGACGTAATATCCGTTGCCAGACCCGTTGA-CGATCAAAAAC-TACGCAGT-TTTA--AGGAACCCAGTGCAG-TATCGTC-TTCAAACCGCCGATTTAT-GCATAA---AC---ATCGGTAC-G----ATCTTGAAGATAAA-TCATTCAGCGATAGAGCGAGA--CCGGGTTTGTT-AAAATTGATGACCTTTCGACTAAGAAATTCTAATTTTGATCGGttaaaattgatggcctattaacttagaaattctaatttggatcggggatggggtcaacgttgttttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgt
gi|4 : ttttttttcaaactgaccacgcgcttcccacgcgaggaagcgcgccaatctgatctgagtcgctgagccgcttaTTATGCTCCGTACGATAATGACGTCATATCCGTTGCCAGACCTGTTGA-CGAAAAATAAATTACGCAGT-TTTTTTGAGAACCCAGTGCGA-CATCTT----CAAACGGCCGATTTAT-GCATAA---AT---ATCGGTAC-G----ATCATGAAGATAAA-TCATTCAGCGATAGAACGTGA--CCGAGTTTGTA-AAAAGTGGTGGCCTATTGACTTTGAAACTCTAATTTTGATCGGGGAAGGGGA--CCACGTTTGTTTATTTCATT---GTttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcct
gi|6 : aactggcgcgtggcattattaTCCGTTGCCATAATTGTTGGTGGACAAAAAA-ATGC----TGTTTAT-G------C----CGAACATTTACATTTAAACATC---GTTTTTGCTTTACTTACCGGATCG----------ATCTTGAAGATAAA-TCATACAGCGATAGAACGAGA--CCGGATTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAA--GGGGTCAACGTTTGTTTCTTTCCTN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC-AAGCTCctctttatatacgttaggggaactgcccaccccatcgttaaacgttattatccactccccaagctcttg
gi|13 : gccaatttgaaaaaaaataaagccgagaatatccgaacatgctactGGAAACCAGTGCGA-CATCTTC-TTCAAACGGCCGATGTAT-GCATAA---AC---ATCGGTAC-G----ATCTTGAAAATAAA-TCATTCAGCGATAAAACGAGA--CCGGGTTTGTA-AACATTGATGG
gi|8 : TAA---AC---ATCGTTTTTGCTTTACTTTCCGGATAAG-TTATTTAGCGATATAACGAGAGACCGGGTTTGTT-AAAATCAATAGCCTATTGACTAAGAAACTCTAATTTTTATCGGGGAA--GTGGTCCACGTTTGTTTGTTNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCC-AAGCTCCTa
gi|9 : ttccgttgccacagatggtggtggacaacaattatgctgtttacgccgaacattcaccttT-A----ATCTTGCAGTTAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTTTTCAAAATTGATTGCCTATTGACTTAGAAATTACAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTtt
gi|7 : t-G----ATCTTGAAGATGAA-TTATTGAACGATAGAACGAGA--CCAGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTATGATCGGGGAAGGGG
gi|11 : aaagccgaggttatccgaacatgctacttccgttgccacagatgttggtggacaacaattatgctgttatcgccatacatttacctttaaacatcgtttttgctttacttaccggatc-G----ATCTTGAAGATAAAATCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-A-------------ATTGACTTAGAAACTCTAACTTTGATCGGTGAA--GGGATCCATGCTTGTTTCTTTCtccccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagcttctgtg
gi|10 : tttacatttaaacatcgtttttgatttacttaccgaatcAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATGTTTATCTGGGAA--GGGGTCCACGTTTGTTACTTTCCTT---ct
gi|15 : GAGA--CCGAGTTTGTT-AAAATTGATGGCTTATTGACTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagct
gi|3 : TTGTT-AAAATTGATGGCCTATTAACTTAGAAATTCTAATTTGGATCGGGGA--TGGGGTCAACGTTGTTTTCTTTCCTTN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTcta
gi|12 : gtaaagtaaaacaataacagaaatctgtaagcttattgataggaagacgttaaaatacagcaaattttaaccaatcagacacgaccccgtatttgctctatacgataatgacgtcatatccgttgccataaatgttgaggacaaaaaaatacgccgttttttggaaactcagtgcgacatcttcttcaaacggctgagtaatgcataaacatcggtacgatcTTAGAAACTTTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTTCTCTATAAATACGCTAGGGGACCTGCCCCCCCCCCCCCCCCCCCCCCCCACCACCACCACCTCCAATTAAACGTAAGTATCCGCTCCCCAAGCTCCTGT
Unaligned ( gi|16 ): CCATCAAACATTATTATCCACTTCCCAATCTCCTGTG
Alignments
lowQualScore : 99999999999999999 1 11 3333 11 1 1111 222222 11 88888888888888888888888888888888888888888888888888888888888
lowQualScore : 0 55555555555555555 3 4 1 99 3 0 11 7 0000 7 1 6 1 1 3 2 3 33 3 8 0 77 5 5 9999 2 1 444444 1 3 1 4 4 4 4 6 1 7 2 4 22 4 44 3 55 66666666666666666666666666666666666666666666666666666666666 0
lowQualScore : . ................. . . . .. . . .. . .... . . . . . . . . .. . . . .. . . .... . . ...... . . . . . . . . . . . . .. . .. . .. ........................................................... .
lowQualScore : 7 00000000000000000 7 0 0 77 7 7 77 3 0000 0 0 7 0 0 7 5 2 88 2 0 8 22 0 0 4444 2 0 666666 8 9 1 4 4 4 4 7 0 3 2 6 22 0 66 1 00 00000000000000000000000000000000000000000000000000000000000 2
consensus : NTTTTTTTCAAATTGGCCACGC-CCTCCCA---GAGG-AGCGCGCNA-TCTGATCCGAGTCGCTGAGGCGCTTA-GGAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGATGGA-CAAAAAAA-TACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGTTAGGGGAACTGCCCACCCCATCGTTAAACGTTATTATCCACCCCCCAAGCTCCTGT
Reference ( family-2158 ) : NTTTTTTTCAAACTGGCCACGCNCCNCCCACGCGAGGCGGCGCGCCANTCTGATCTGAGTCGCTGAGNCGCTTATGGAAAAGTGAGNCAATAACAGAAATCTGT---CTGAAAGCATAAGCNTCTCCGTGACNTNGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAACTGTTGA-GGA-CAAAAAAAATACGCNGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGANTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCAAGCTCCTGT
gi|1 : TTGTTTTCAAATTGGCCATGCCCCT-------AAGA----ACGCAATTCTGATCCGAATCGCTGAGGTACTTAAAGAAAAATAAAGCAATAACAGAAATCTGTTAGCTGAAAGCCTAAGCTTCTCCGTGACATTGATTGGAAGACGTTTA--AAATACAACGAATTTTAACCAATCAGACACGACCCCTTTTT-TGCTCCATACAATAATGACATCATATCTGTTGCCATAAATGTTGA-GGA-TAAAAAAAATACACCATTTTAT-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCAGAGTTATGCATAAAC--ATCGCTATGATCTTGAAGATAAA-TCATTCAGCGACAGAATGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAAGGGGGGTCAACGTTTGTTTCTTTCGTT---G-----TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAAGCTCCTGT
gi|10 : cAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATGTTTATCTGGGAA--GGGGTCCACGTTTGTTACTTTCCTT---g
gi|11 : CGATCTTGAAGATAAAATCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-A-------------ATTGACTTAGAAACTCTAACTTTGATCGGTGAA--GGGATCCATGCTTGTTTCTTTCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagct
gi|12 : tttacatttaaacatcgtttttgatttacttaccgaatTTAGAAACTTTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGCTCATGT
gi|13 : aGGAAACCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATGTATGCATAAAC--ATCGGTACGATCTTGAAAATAAA-TCATTCAGCGATAAAACGAGA--CCGGGTTTGTA-AACATTGATGG
gi|15 : GAGA--CCGAGTTTGTT-AAAATTGATGGCTTATTGACTTa
gi|2 : TTTTTTTCAAACTGACCACGCGCTTCCCACGCGAGGAAGCGCGCCAATCTGATCTGAGTCGCTGAGCCGCTTATGGAAAActa
gi|2 : tGGAAAA--TTTACAGAATACAGCGAATTT-AACCAATCTGACACGGCACTGTATC-TGCTCCATACGATAATGACGTAATATCCGTTGCCAGACCCGTTGA-CGATCAAAAAC--TACGCAGTTTTA--AGGAACCCAGTGCAG-TAT-CG-TC-TTCAAACCGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAGCGAGA--CCGGGTTTGTT-AAAATTGATGACCTTTCGACTAAGAAATTCTAATTTTGATCGG---------------------TTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTtttacagaatacagcgaatttaaccaatctgacacggcactgtatctgctccatacgataatgacgtaatatccgttgccagacccgttgacgatcaaaaactacgcagttttaaggaacccagtgcagtatcgtcttcaaaccgccgatttatgcataaacatcggtacgatcttgaagataaatcattcagcgatagagcgagaccgggtttgttaaaattgatgacctttcgactaagaaattctaattttgatcggttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcct
gi|3 : ttttttttcaaactgaccacgcgcttcccacgcgaggaagcgcgccaatctgatctgagtcgctgagccgcttatAAAGTAAAACAATAACAGAAATCTGT-------------AAGCTT---------ATTGATAGGAAGACGTT-A--AAATACAGCAAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCTATACGATAATGACGTCATATCCGTTGCCATAAATGTTGA-GGA-C-AAAAAAATACGCCGTTTTTT-GGAAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCTGAGTAATGCATAAAC--ATCGGTACGATCTTG
gi|3 : gtTTGTT-AAAATTGATGGCCTATTAACTTAGAAATTCTAATTTGGATCGGGGAT--GGGGTCAACGTTGTTTTCTTTCCTTN--N-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTttaaaattgatggcctattaacttagaaattctaatttggatcggggatggggtcaacgttgttttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgt
gi|4 : gtaaagtaaaacaataacagaaatctgtaagcttattgataggaagacgttaaaatacagcaaattttaaccaatcagacacgaccccgtatttgctctatacgataatgacgtcatatccgttgccataaatgttgaggacaaaaaaatacgccgttttttggaaactcagtgcgacatcttcttcaaacggctgagtaatgcataaacatcggtacgatcTATTATGCTCCGTACGATAATGACGTCATATCCGTTGCCAGACCTGTTGA-CGA-AAAATAAATTACGCAGTTTTTTTGAGAACCCAGTGCGA-CAT-CT-T----CAAACGGCCGATTTATGCATAAAT--ATCGGTACGATCATGAAGATAAA-TCATTCAGCGATAGAACGTGA--CCGAGTTTGTA-AAAAGTGGTGGCCTATTGACTTTGAAACTCTAATTTTGATCGGGGAA--GGGGACCACGTTTGTTTATTTCATT---GTCTCTTTATATACGTTAGGGGAACTGCCCACCCCATCGTTAAACGTTATTATCCACTCCCCAAGCTCTTG
gi|5 : aactggcgcgtggcattatTTTTTTTCAAATTGGCCACGC----CTCA----A---AGCGCGCTA-TCTGATCTGAGTCGCTGAGGCGTTTA--------TGAGTCAATA---------------CTGAAAGCATAAGCATCTCCGTGACTTGGATCGGAAGTCGTTTA--AAATACAGCGAATTTTAACCAATCAGATACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAATTGTTAA-GGA-TAAAAAAAA-A-GCCGTTTTTG-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGAGTTATGCATAAAC--ATCGGTACAATCTTGAAGATAAA-TCATTCAGCAATAGAACGAGA--CCGGGTTTGTT-AAA
gi|6 : tTCCGTTGCCATAATTGTTGGTGGA-CAAAAAAA---TGCTGTTTAT------GCCGA-----A-CAT-TT-ACATTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATAAA-TCATACAGCGATAGAACGAGA--CCGGATTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAA--GGGGTCAACGTTTGTTTCTTTCC-T---N-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGCTC
gi|7 : gccaatttgaaaaaaaataaagccgagaatatccgaacatgctactTCCGTTGCCACAGATGTTGGTGGA-CAACAAT--TATGCTGTTATC----G---CCA-T---A-CAT-TTACC-TTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATGAA-TTATTGAACGATAGAACGAGA--CCAGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTATGATCGGGGAA--GGGGTCC
gi|8 : aaagccgaggttatccgaacatgctactTCCGTTGCCACAGATGGTGGTGGA-CAACAAT--TATGCTGTTT--------ACGC----CGAACATTCA-CC-TTTAAACA-TCGTTTT-TGCTT-----------TAC---TTTCCGGATAAG-TTATTTAGCGATATAACGAGAGACCGGGTTTGTT-AAAATCAATAGCCTATTGACTAAGAAACTCTAATTTTTATCGGGGAA--GTGGTCCACGTTTGTTT-GTTNNNN---N-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCAAGCTCCTccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagcttctgtg
gi|9 : tATCTTGCAGTTAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTTTTCAAAATTGATTGCCTATTGACTTAGAAATTACAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCTCTATAAATACGCTAGGGGACCTGCCCCCCCCCCCCCCCCCCCCCCCCACCACCACCACCTCCAATTAAACGTAAGTATCCGCTCCCCAAGCTCCTGT
Unaligned ( gi|16 ): CCATCAAACATTATTATCCACTTCCCAATCTCCTGTG
Alignments
lowQualScore : 777777777777777777 111 333 444444444444 11 1 222222 11 6666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 444444444444444444 1 777 0 888 3 1 7 777777777777 6 3 2 3 33 3 8 0 11 3 5 0 9 0 2 444444 1 3 1 4 4 4 4 6 7 2 4 22 4 44 3 55 1111111111111111111111111111111111111111111111111111111111111111111111111 0 0 1
lowQualScore : .................. . ... . ... . . . ............ . . . . .. . . . .. . . . . . . ...... . . . . . . . . . . . .. . .. . .. ......................................................................... . . .
lowQualScore : 777777777777777777 0 777 7 777 7 0 3 777777777777 7 7 5 2 88 2 0 8 88 1 0 2 5 2 2 666666 8 9 1 4 4 4 4 7 3 2 6 22 0 66 1 00 2222222222222222222222222222222222222222222222222222222222222222222222222 6 4 4
consensus : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCNA-T-CTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGAC-AAAAAAATACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
Reference ( family-2158 ) : NTTTTTTTCAAATTGGCCACGC-CCTCCCA---GAGGA-GCGCGCNA-T-CTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGATGGAC-AAAAAAATACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGTTAGGGGAACTGC------------------------CCACC-CCATC----GTTAAACGTTATTATCCACCCCCCAAGCTCCTGT
gi|1 : TTGTTTTCAAATTGGCCATGC-CC--CTA----AGAA----CGCAA-TTCTGATCCGAATCGCTGAGGTACTTA-AAGAAAAATAAAGCAATAACAGAAATCTGTTAGCTGAAAGCCTAAGCTTCTCCGTGACATTGATTGGAAGACGTTTA--AAATACAACGAATTTTAACCAATCAGACACGACCCCTTTTT-TGCTCCATACAATAATGACATCATATCTGTTGCCATAAATGTTGA-GGATAAAAAAAATACACCATTTTAT-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCAGAGTTATGCATAAAC--ATCGCTATGATCTTGAAGATAAA-TCATTCAGCGACAGAATGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAAGGGGGGTCAACGTTTGTTTCTTTCGTT---G-----TGNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCAAAGCTCCTGT
gi|10 : cAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATGTTTATCTGGGAA--GGGGTCCACGTTTGTTACTTTCCTT---g
gi|11 : CGATCTTGAAGATAAAATCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-A-------------ATTGACTTAGAAACTCTAACTTTGATCGGTGAA--GGGATCCATGCTTGTTTCTTTCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagct
gi|12 : tttacatttaaacatcgtttttgatttacttaccgaatTTAGAAACTTTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCATGT
gi|13 : aGGAAACCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATGTATGCATAAAC--ATCGGTACGATCTTGAAAATAAA-TCATTCAGCGATAAAACGAGA--CCGGGTTTGTA-AACATTGATGG
gi|14 : TTTCTCT---A-----TAA-ATACGCTAGGGGACCTGCCCCCCCCCCCCCCCCCCCCCCCCACCACCACCACCTCCAATTAAACGTAAGTATCCGCTCCCCAAGCTCCTGTa
gi|15 : GAGA--CCGAGTTTGTT-AAAATTGATGGCTTATTGACTT
gi|16 : -CCATC-------AAACATTATTATCCACTTCCCAATCTCCTGTcta
gi|2 : TTTTTTTCAAACTGACCACGCGCTTCCCACGCGAGGAAGCGCGCCAAT-CTGATCTGAGTCGCTGAGCCGCTTATG-GAAAAg
gi|2 : tGGAAAA--TTTACAGAATACAGCGAATTT-AACCAATCTGACACGGCACTGTATC-TGCTCCATACGATAATGACGTAATATCCGTTGCCAGACCCGTTGACG-AT-CAAAAACTACGCAGTTTTA--AGGAACCCAGTGCAG-TAT-CG-TC-TTCAAACCGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAGCGAGA--CCGGGTTTGTT-AAAATTGATGACCTTTCGACTAAGAAATTCTAATTTTGATCGG---------------------TTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTtttacagaatacagcgaatttaaccaatctgacacggcactgtatctgctccatacgataatgacgtaatatccgttgccagacccgttgacgatcaaaaactacgcagttttaaggaacccagtgcagtatcgtcttcaaaccgccgatttatgcataaacatcggtacgatcttgaagataaatcattcagcgatagagcgagaccgggtttgttaaaattgatgacctttcgactaagaaattctaattttgatcggttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcct
gi|3 : ttttttttcaaactgaccacgcgcttcccacgcgaggaagcgcgccaatctgatctgagtcgctgagccgcttatAAAGTAAAACAATAACAGAAATCTGT-------------AAGCTT---------ATTGATAGGAAGACGTT-A--AAATACAGCAAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCTATACGATAATGACGTCATATCCGTTGCCATAAATGTTGA-GGAC-AAAAAAATACGCCGTTTTTT-GGAAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCTGAGTAATGCATAAAC--ATCGGTACGATCTTG
gi|3 : gtTTGTT-AAAATTGATGGCCTATTAACTTAGAAATTCTAATTTGGATCGGGGAT--GGGGTCAACGTTGTTTTCTTTCCTTN--N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTttaaaattgatggcctattaacttagaaattctaatttggatcggggatggggtcaacgttgttttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgt
gi|4 : gtaaagtaaaacaataacagaaatctgtaagcttattgataggaagacgttaaaatacagcaaattttaaccaatcagacacgaccccgtatttgctctatacgataatgacgtcatatccgttgccataaatgttgaggacaaaaaaatacgccgttttttggaaactcagtgcgacatcttcttcaaacggctgagtaatgcataaacatcggtacgatcTATTATGCTCCGTACGATAATGACGTCATATCCGTTGCCAGACCTGTTGACGAAA-AATAAATTACGCAGTTTTTTTGAGAACCCAGTGCGA-CAT-CT-T----CAAACGGCCGATTTATGCATAAAT--ATCGGTACGATCATGAAGATAAA-TCATTCAGCGATAGAACGTGA--CCGAGTTTGTA-AAAAGTGGTGGCCTATTGACTTTGAAACTCTAATTTTGATCGGGGAA--GGGGACCACGTTTGTTTATTTCATT---GTCTCTTTATATACGTTAGGGGAACTGC------------------------CCACC-CCATC----GTTAAACGTTATTATCCACTCCCCAAGCTCTTG
gi|5 : aactggcgcgtggcattatTTTTTTTCAAATTGGCCACGC-CT---CA---AAG----CGCGCTA-T-CTGATCTGAGTCGCTGAGGCGTTTA---------TGAGTCAATA---------------CTGAAAGCATAAGCATCTCCGTGACTTGGATCGGAAGTCGTTTA--AAATACAGCGAATTTTAACCAATCAGATACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAATTGTTAA-GGAT-AAAAAAA-AAGCCGTTTTTG-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGAGTTATGCATAAAC--ATCGGTACAATCTTGAAGATAAA-TCATTCAGCAATAGAACGAGA--CCGGGTTTGTT-AAA
gi|6 : tTCCGTTGCCATAATTGTTGGTGGAC-AAAAAAAT--GCTGTTTAT------GCCGA-----A-CAT-TT-ACATTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATAAA-TCATACAGCGATAGAACGAGA--CCGGATTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAA--GGGGTCAACGTTTGTTTCTTTCC-T---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTC
gi|7 : gccaatttgaaaaaaaataaagccgagaatatccgaacatgctactTCCGTTGCCACAGATGTTGGTGGAC-AACAAT-TATGCTGTTATC----G---CCA-T---A-CAT-TTACC-TTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATGAA-TTATTGAACGATAGAACGAGA--CCAGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTATGATCGGGGAA--GGGGTCC
gi|8 : aaagccgaggttatccgaacatgctactTCCGTTGCCACAGATGGTGGTGGAC-AACAAT-TATGCTGTTT--------ACGC----CGAACATTCA-CC-TTTAAACA-TCGTTTT-TGCTT-----------TAC---TTTCCGGATAAG-TTATTTAGCGATATAACGAGAGACCGGGTTTGTT-AAAATCAATAGCCTATTGACTAAGAAACTCTAATTTTTATCGGGGAA--GTGGTCCACGTTTGTTT-GTTNNNN---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNCCCCCAAGCTCCTccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagcttctgtg
gi|9 : tATCTTGCAGTTAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTTTTCAAAATTGATTGCCTATTGACTTAGAAATTACAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTtt
Alignments
lowQualScore : 1 555555555555555 222 333 444444444444 11 1 222222 11 6666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 3 777777777777777 111 0 888 3 1 7 777777777777 6 3 2 3 33 3 8 0 11 4 5 0 9 0 2 444444 1 3 1 4 4 4 4 6 7 2 4 22 4 44 3 55 0000000000000000000000000000000000000000000000000000000000000000000000000 1 0 0 1
lowQualScore : . ............... ... . ... . . . ............ . . . . .. . . . .. . . . . . . ...... . . . . . . . . . . . .. . .. . .. ......................................................................... . . . .
lowQualScore : 3 000000000000000 777 7 777 7 0 3 777777777777 7 7 5 2 88 2 0 8 88 8 0 2 5 2 2 666666 8 9 1 4 4 4 4 7 3 2 6 22 0 66 1 00 6666666666666666666666666666666666666666666666666666666666666666666666666 0 4 9 9
consensus : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCTA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGAC-AAAAAAATACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
Reference ( family-2158 ) : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCNA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGAC-AAAAAAATACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
gi|1 : TTGTTTTCAAATTGGCCATGC-CC--CTA----AGAA--CGCAAT--TCTGATCCGAATCGCTGAGGTACTTA-AAGAAAAATAAAGCAATAACAGAAATCTGTTAGCTGAAAGCCTAAGCTTCTCCGTGACATTGATTGGAAGACGTTTA--AAATACAACGAATTTTAACCAATCAGACACGACCCCTTTTT-TGCTCCATACAATAATGACATCATATCTGTTGCCATAAATGTTGA-GGATAAAAAAAATACACCATTTTAT-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCAGAGTTATGCATAAAC--ATCGCTATGATCTTGAAGATAAA-TCATTCAGCGACAGAATGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAAGGGGGGTCAACGTTTGTTTCTTTCGTT---G-----TGNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCAAAGCTCCTGT
gi|10 : cAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATGTTTATCTGGGAA--GGGGTCCACGTTTGTTACTTTCCTT---g
gi|11 : CGATCTTGAAGATAAAATCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-A-------------ATTGACTTAGAAACTCTAACTTTGATCGGTGAA--GGGATCCATGCTTGTTTCTTTCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagct
gi|12 : tttacatttaaacatcgtttttgatttacttaccgaatTTAGAAACTTTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCATGT
gi|13 : aGGAAACCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATGTATGCATAAAC--ATCGGTACGATCTTGAAAATAAA-TCATTCAGCGATAAAACGAGA--CCGGGTTTGTA-AACATTGATGG
gi|14 : TTTCTCT---A-----TAA-ATACGCTAGGGGACCTGCCCCCCCCCCCCCCCCCCCCCCCCACCACCACCACCTCCAATTAAACGTAAGTATCCGCTCCCCAAGCTCCTGTa
gi|15 : GAGA--CCGAGTTTGTT-AAAATTGATGGCTTATTGACTT
gi|16 : -CCATC-------AAACATTATTATCCACTTCCCAATCTCCTGTcta
gi|2 : TTTTTTTCAAACTGACCACGCGCTTCCCACGCGAGGAAGCGCGCCAATCTGATCTGAGTCGCTGAGCCGCTTATG-GAAAAg
gi|2 : tGGAAAA--TTTACAGAATACAGCGAATTT-AACCAATCTGACACGGCACTGTATC-TGCTCCATACGATAATGACGTAATATCCGTTGCCAGACCCGTTGACG-AT-CAAAAACTACGCAGTTTTA--AGGAACCCAGTGCAG-TAT-CG-TC-TTCAAACCGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAGCGAGA--CCGGGTTTGTT-AAAATTGATGACCTTTCGACTAAGAAATTCTAATTTTGATCGG---------------------TTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTtttacagaatacagcgaatttaaccaatctgacacggcactgtatctgctccatacgataatgacgtaatatccgttgccagacccgttgacgatcaaaaactacgcagttttaaggaacccagtgcagtatcgtcttcaaaccgccgatttatgcataaacatcggtacgatcttgaagataaatcattcagcgatagagcgagaccgggtttgttaaaattgatgacctttcgactaagaaattctaattttgatcggttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcct
gi|3 : ttttttttcaaactgaccacgcgcttcccacgcgaggaagcgcgccaatctgatctgagtcgctgagccgcttatAAAGTAAAACAATAACAGAAATCTGT-------------AAGCTT---------ATTGATAGGAAGACGTT-A--AAATACAGCAAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCTATACGATAATGACGTCATATCCGTTGCCATAAATGTTGA-GGAC-AAAAAAATACGCCGTTTTTT-GGAAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCTGAGTAATGCATAAAC--ATCGGTACGATCTTG
gi|3 : gtTTGTT-AAAATTGATGGCCTATTAACTTAGAAATTCTAATTTGGATCGGGGAT--GGGGTCAACGTTGTTTTCTTTCCTTN--N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTttaaaattgatggcctattaacttagaaattctaatttggatcggggatggggtcaacgttgttttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgt
gi|4 : gtaaagtaaaacaataacagaaatctgtaagcttattgataggaagacgttaaaatacagcaaattttaaccaatcagacacgaccccgtatttgctctatacgataatgacgtcatatccgttgccataaatgttgaggacaaaaaaatacgccgttttttggaaactcagtgcgacatcttcttcaaacggctgagtaatgcataaacatcggtacgatcTATTATGCTCCGTACGATAATGACGTCATATCCGTTGCCAGACCTGTTGACGAAA-AATAAATTACGCAGTTTTTTTGAGAACCCAGTGCGA-CAT-CT-T----CAAACGGCCGATTTATGCATAAAT--ATCGGTACGATCATGAAGATAAA-TCATTCAGCGATAGAACGTGA--CCGAGTTTGTA-AAAAGTGGTGGCCTATTGACTTTGAAACTCTAATTTTGATCGGGGAA--GGGGACCACGTTTGTTTATTTCATT---GTCTCTTTATATACGTTAGGGGAACTGC------------------------CCACC-CCATC----GTTAAACGTTATTATCCACTCCCCAAGCTCTTG
gi|5 : aactggcgcgtggcattatTTTTTTTCAAATTGGCCACGC-CT--C-A---AAG----CGCGCTA-TCTGATCTGAGTCGCTGAGGCGTTTA---------TGAGTCAATA---------------CTGAAAGCATAAGCATCTCCGTGACTTGGATCGGAAGTCGTTTA--AAATACAGCGAATTTTAACCAATCAGATACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAATTGTTAA-GGAT-AAAAAAA-AAGCCGTTTTTG-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGAGTTATGCATAAAC--ATCGGTACAATCTTGAAGATAAA-TCATTCAGCAATAGAACGAGA--CCGGGTTTGTT-AAA
gi|6 : tTCCGTTGCCATAATTGTTGGTGGAC-AAAAAAAT--GCTGTTTAT------GCCGA-----A-CAT-TT-ACATTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATAAA-TCATACAGCGATAGAACGAGA--CCGGATTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAA--GGGGTCAACGTTTGTTTCTTTCC-T---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTC
gi|7 : gccaatttgaaaaaaaataaagccgagaatatccgaacatgctactTCCGTTGCCACAGATGTTGGTGGAC-AACAAT-TATGCTGTTATC----G---CCA-T---A-CAT-TTACC-TTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATGAA-TTATTGAACGATAGAACGAGA--CCAGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTATGATCGGGGAA--GGGGTCC
gi|8 : aaagccgaggttatccgaacatgctactTCCGTTGCCACAGATGGTGGTGGAC-AACAAT-TATGCTGTTT--------ACGC----CGAACATTCA-CC-TTTAAACA-TCGTTTT-TGCTT-----------TAC---TTTCCGGATAAG-TTATTTAGCGATATAACGAGAGACCGGGTTTGTT-AAAATCAATAGCCTATTGACTAAGAAACTCTAATTTTTATCGGGGAA--GTGGTCCACGTTTGTTTGTTNNNNN---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNC-CCCCAAGCTCCTccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagcttctgtg
gi|9 : tATCTTGCAGTTAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTTTTCAAAATTGATTGCCTATTGACTTAGAAATTACAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTtt
Alignments
lowQualScore : 1 555555555555555 22 333 444444444444 11 1 222222 11 6666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 3 777777777777777 00 0 888 3 1 7 777777777777 6 3 2 3 33 3 8 0 11 4 5 0 9 0 2 444444 1 3 1 4 4 4 4 6 7 2 4 22 4 44 3 55 0000000000000000000000000000000000000000000000000000000000000000000000000 1 0 0 1
lowQualScore : . ............... .. . ... . . . ............ . . . . .. . . . .. . . . . . . ...... . . . . . . . . . . . .. . .. . .. ......................................................................... . . . .
lowQualScore : 3 000000000000000 77 7 777 7 0 3 777777777777 7 7 5 2 88 2 0 8 88 8 0 2 5 2 2 666666 8 9 1 4 4 4 4 7 3 2 6 22 0 66 1 00 6666666666666666666666666666666666666666666666666666666666666666666666666 0 4 9 9
consensus : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCTA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGAC-AAAAAAATACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
Reference ( family-2158 ) : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCTA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGAC-AAAAAAATACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
gi|1 : TTGTTTTCAAATTGGCCATGC-CC--CTA----AGAA--CGCAAT--TCTGATCCGAATCGCTGAGGTACTTA-AAGAAAAATAAAGCAATAACAGAAATCTGTTAGCTGAAAGCCTAAGCTTCTCCGTGACATTGATTGGAAGACGTTTA--AAATACAACGAATTTTAACCAATCAGACACGACCCCTTTTT-TGCTCCATACAATAATGACATCATATCTGTTGCCATAAATGTTGA-GGATAAAAAAAATACACCATTTTAT-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCAGAGTTATGCATAAAC--ATCGCTATGATCTTGAAGATAAA-TCATTCAGCGACAGAATGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAAGGGGGGTCAACGTTTGTTTCTTTCGTT---G-----TGNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCAAAGCTCCTGT
gi|10 : cAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATGTTTATCTGGGAA--GGGGTCCACGTTTGTTACTTTCCTT---g
gi|11 : CGATCTTGAAGATAAAATCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-A-------------ATTGACTTAGAAACTCTAACTTTGATCGGTGAA--GGGATCCATGCTTGTTTCTTTCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagct
gi|12 : tttacatttaaacatcgtttttgatttacttaccgaatTTAGAAACTTTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCATGT
gi|13 : aGGAAACCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATGTATGCATAAAC--ATCGGTACGATCTTGAAAATAAA-TCATTCAGCGATAAAACGAGA--CCGGGTTTGTA-AACATTGATGG
gi|14 : TTTCTCT---A-----TAA-ATACGCTAGGGGACCTGCCCCCCCCCCCCCCCCCCCCCCCCACCACCACCACCTCCAATTAAACGTAAGTATCCGCTCCCCAAGCTCCTGTa
gi|15 : GAGA--CCGAGTTTGTT-AAAATTGATGGCTTATTGACTT
gi|16 : -CCATC-------AAACATTATTATCCACTTCCCAATCTCCTGTcta
gi|2 : TTTTTTTCAAACTGACCACGCGCTTCCCACGCGAGGAAGCGCGCCAATCTGATCTGAGTCGCTGAGCCGCTTATG-GAAAAg
gi|2 : tGGAAAA--TTTACAGAATACAGCGAATTT-AACCAATCTGACACGGCACTGTATC-TGCTCCATACGATAATGACGTAATATCCGTTGCCAGACCCGTTGACG-AT-CAAAAACTACGCAGTTTTA--AGGAACCCAGTGCAG-TAT-CG-TC-TTCAAACCGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAGCGAGA--CCGGGTTTGTT-AAAATTGATGACCTTTCGACTAAGAAATTCTAATTTTGATCGG---------------------TTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTtttacagaatacagcgaatttaaccaatctgacacggcactgtatctgctccatacgataatgacgtaatatccgttgccagacccgttgacgatcaaaaactacgcagttttaaggaacccagtgcagtatcgtcttcaaaccgccgatttatgcataaacatcggtacgatcttgaagataaatcattcagcgatagagcgagaccgggtttgttaaaattgatgacctttcgactaagaaattctaattttgatcggttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcct
gi|3 : ttttttttcaaactgaccacgcgcttcccacgcgaggaagcgcgccaatctgatctgagtcgctgagccgcttatAAAGTAAAACAATAACAGAAATCTGT-------------AAGCTT---------ATTGATAGGAAGACGTT-A--AAATACAGCAAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCTATACGATAATGACGTCATATCCGTTGCCATAAATGTTGA-GGAC-AAAAAAATACGCCGTTTTTT-GGAAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCTGAGTAATGCATAAAC--ATCGGTACGATCTTG
gi|3 : gtTTGTT-AAAATTGATGGCCTATTAACTTAGAAATTCTAATTTGGATCGGGGAT--GGGGTCAACGTTGTTTTCTTTCCTTN--N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTttaaaattgatggcctattaacttagaaattctaatttggatcggggatggggtcaacgttgttttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgt
gi|4 : gtaaagtaaaacaataacagaaatctgtaagcttattgataggaagacgttaaaatacagcaaattttaaccaatcagacacgaccccgtatttgctctatacgataatgacgtcatatccgttgccataaatgttgaggacaaaaaaatacgccgttttttggaaactcagtgcgacatcttcttcaaacggctgagtaatgcataaacatcggtacgatcTATTATGCTCCGTACGATAATGACGTCATATCCGTTGCCAGACCTGTTGACGAAA-AATAAATTACGCAGTTTTTTTGAGAACCCAGTGCGA-CAT-CT-T----CAAACGGCCGATTTATGCATAAAT--ATCGGTACGATCATGAAGATAAA-TCATTCAGCGATAGAACGTGA--CCGAGTTTGTA-AAAAGTGGTGGCCTATTGACTTTGAAACTCTAATTTTGATCGGGGAA--GGGGACCACGTTTGTTTATTTCATT---GTCTCTTTATATACGTTAGGGGAACTGC------------------------CCACC-CCATC----GTTAAACGTTATTATCCACTCCCCAAGCTCTTG
gi|5 : aactggcgcgtggcattatTTTTTTTCAAATTGGCCACGC-CT--C-A---AAG----CGCGCTA-TCTGATCTGAGTCGCTGAGGCGTTTA---------TGAGTCAATA---------------CTGAAAGCATAAGCATCTCCGTGACTTGGATCGGAAGTCGTTTA--AAATACAGCGAATTTTAACCAATCAGATACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAATTGTTAA-GGAT-AAAAAAA-AAGCCGTTTTTG-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGAGTTATGCATAAAC--ATCGGTACAATCTTGAAGATAAA-TCATTCAGCAATAGAACGAGA--CCGGGTTTGTT-AAA
gi|6 : tTCCGTTGCCATAATTGTTGGTGGAC-AAAAAAAT--GCTGTTTAT------GCCGA-----A-CAT-TT-ACATTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATAAA-TCATACAGCGATAGAACGAGA--CCGGATTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAA--GGGGTCAACGTTTGTTTCTTTCC-T---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTC
gi|7 : gccaatttgaaaaaaaataaagccgagaatatccgaacatgctactTCCGTTGCCACAGATGTTGGTGGAC-AACAAT-TATGCTGTTATC----G---CCA-T---A-CAT-TTACC-TTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATGAA-TTATTGAACGATAGAACGAGA--CCAGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTATGATCGGGGAA--GGGGTCC
gi|8 : aaagccgaggttatccgaacatgctactTCCGTTGCCACAGATGGTGGTGGAC-AACAAT-TATGCTGTTT--------ACGC----CGAACATTCA-CC-TTTAAACA-TCGTTTT-TGCTT-----------TAC---TTTCCGGATAAG-TTATTTAGCGATATAACGAGAGACCGGGTTTGTT-AAAATCAATAGCCTATTGACTAAGAAACTCTAATTTTTATCGGGGAA--GTGGTCCACGTTTGTTTGTTNNNNN---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNC-CCCCAAGCTCCTccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagcttctgtg
gi|9 : tATCTTGCAGTTAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTTTTCAAAATTGATTGCCTATTGACTTAGAAATTACAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTtt
blockSeqs : G TCCCACGCGAGGAAG AA TG G A A CTGAAAGCA C A C T CA T A CC C . C A TTTTGA A G G A T A A G A A A TT A GA C . ATAAATACGCTAGGGGACCTGCCCCCCCCCCCCCCCCCCCCCCCCACCACCACCACCTCCAATT N N
blockSeqs : . CAAAG A . . T . . . C C T . T . AA C . A C TTTGG A G G . . . . G A A A TT . . . . GTCTCTTTATATACGTTAGGGGAACTGCCCACCCCATCGTT A T
blockSeqs : . . . . . CC T . T A TTGGG A G G . . . . G A A A . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T T
blockSeqs : . AT T . A C TAAG A G G . . . . G A A A . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N
blockSeqs : AT T . A T AT A G G . . . . G A A A . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N
blockSeqs : GA . . . T TC . . . . . . . . . T . . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T T
blockSeqs : GA . . . T . . . . . . . . . . T . . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N
blockSeqs : . . . . . . . . . . . . . . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N
blockSeqs : . . . . N .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : TTGG** **
originalCons : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCTA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGAC-AAAAAAATACGCCGTTTTTT-GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
finalCons : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCTA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGAC-AAAAAAATACGCCGTTTTTGG--GAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
Alignments
lowQualScore : 1 555555555555555 22 333 444444444444 11 1 11 11111111 11 6666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 3 777777777777777 00 0 888 3 1 7 777777777777 6 3 2 3 33 3 8 0 11 4 0 44 0 2 5 77777777 3 1 4 4 4 4 6 7 2 4 22 4 44 3 55 0000000000000000000000000000000000000000000000000000000000000000000000000 1 0 0 1
lowQualScore : . ............... .. . ... . . . ............ . . . . .. . . . .. . . .. . . . ........ . . . . . . . . . . .. . .. . .. ......................................................................... . . . .
lowQualScore : 3 000000000000000 77 7 777 7 0 3 777777777777 7 7 5 2 88 2 0 8 88 8 2 55 2 2 0 33333333 9 1 4 4 4 4 7 3 2 6 22 0 66 1 00 6666666666666666666666666666666666666666666666666666666666666666666666666 0 4 9 9
consensus : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCTA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGACAAAAAAA-TACGCCG-TTTT-T--GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
Reference ( family-2158 ) : NTTTTTTTCAAATTGGCCACGC-CT--CCA---GAGGA--CGCGCTA-TCTGATCCGAGTCGCTGAGGCGCTTA-G-GAAAAGTAAANCAATAACAGAAATCTGT---CTGAAAGC-TAAGCTTCTCCGTGACATTGATCGGAAGACGTTTA--AAATACAGCGAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAANTGTTGACGGACAAAAAAA-TACGCCG-TTTT-T--GGGAACCCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTT---G-----TNATATACGCTAGGGGANCTGC------------------------CCACC-CCATC----GTTAAACGTNATTATCCGCTCCCCAAGCTCCTGT
gi|1 : TTGTTTTCAAATTGGCCATGC-CC--CTA----AGAA--CGCAAT--TCTGATCCGAATCGCTGAGGTACTTA-AAGAAAAATAAAGCAATAACAGAAATCTGTTAGCTGAAAGCCTAAGCTTCTCCGTGACATTGATTGGAAGACGTTTA--AAATACAACGAATTTTAACCAATCAGACACGACCCCTTTTT-TGCTCCATACAATAATGACATCATATCTGTTGCCATAAATGTTGA-GGATAAAAAAAATACACCA-TTTTAT--GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCAGAGTTATGCATAAAC--ATCGCTATGATCTTGAAGATAAA-TCATTCAGCGACAGAATGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAAGGGGGGTCAACGTTTGTTTCTTTCGTT---G-----TGNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCAAAGCTCCTGT
gi|10 : cAGAACGAGA--CCGGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATGTTTATCTGGGAA--GGGGTCCACGTTTGTTACTTTCCTT---g
gi|11 : CGATCTTGAAGATAAAATCATTCAGCGATAGAACGAGA--CCGGGTTTGTT-A-------------ATTGACTTAGAAACTCTAACTTTGATCGGTGAA--GGGATCCATGCTTGTTTCTTTCCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagct
gi|12 : tttacatttaaacatcgtttttgatttacttaccgaatTTAGAAACTTTAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCATGT
gi|13 : aGGAAACCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGATGTATGCATAAAC--ATCGGTACGATCTTGAAAATAAA-TCATTCAGCGATAAAACGAGA--CCGGGTTTGTA-AACATTGATGG
gi|14 : TTTCTCT---A-----TAA-ATACGCTAGGGGACCTGCCCCCCCCCCCCCCCCCCCCCCCCACCACCACCACCTCCAATTAAACGTAAGTATCCGCTCCCCAAGCTCCTGTa
gi|15 : GAGA--CCGAGTTTGTT-AAAATTGATGGCTTATTGACTT
gi|16 : -CCATC-------AAACATTATTATCCACTTCCCAATCTCCTGTcta
gi|2 : TTTTTTTCAAACTGACCACGCGCTTCCCACGCGAGGAAGCGCGCCAATCTGATCTGAGTCGCTGAGCCGCTTATG-GAAAAg
gi|2 : tGGAAAA--TTTACAGAATACAGCGAATTT-AACCAATCTGACACGGCACTGTATC-TGCTCCATACGATAATGACGTAATATCCGTTGCCAGACCCGTTGACG-ATCAAAAAC-TACGCAG-TTTT-A--AGGAACCCAGTGCAG-TAT-CG-TC-TTCAAACCGCCGATTTATGCATAAAC--ATCGGTACGATCTTGAAGATAAA-TCATTCAGCGATAGAGCGAGA--CCGGGTTTGTT-AAAATTGATGACCTTTCGACTAAGAAATTCTAATTTTGATCGG---------------------TTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTtttacagaatacagcgaatttaaccaatctgacacggcactgtatctgctccatacgataatgacgtaatatccgttgccagacccgttgacgatcaaaaactacgcagttttaaggaacccagtgcagtatcgtcttcaaaccgccgatttatgcataaacatcggtacgatcttgaagataaatcattcagcgatagagcgagaccgggtttgttaaaattgatgacctttcgactaagaaattctaattttgatcggttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcct
gi|3 : ttttttttcaaactgaccacgcgcttcccacgcgaggaagcgcgccaatctgatctgagtcgctgagccgcttatAAAGTAAAACAATAACAGAAATCTGT-------------AAGCTT---------ATTGATAGGAAGACGTT-A--AAATACAGCAAATTTTAACCAATCAGACACGACCCCGTATT-TGCTCTATACGATAATGACGTCATATCCGTTGCCATAAATGTTGA-GGACAAAAAAA-TACGCCGTTTTT-T--GGAAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCTGAGTAATGCATAAAC--ATCGGTACGATCTTG
gi|3 : gtTTGTT-AAAATTGATGGCCTATTAACTTAGAAATTCTAATTTGGATCGGGGAT--GGGGTCAACGTTGTTTTCTTTCCTTN--N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTttaaaattgatggcctattaacttagaaattctaatttggatcggggatggggtcaacgttgttttctttccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagctcctgt
gi|4 : gtaaagtaaaacaataacagaaatctgtaagcttattgataggaagacgttaaaatacagcaaattttaaccaatcagacacgaccccgtatttgctctatacgataatgacgtcatatccgttgccataaatgttgaggacaaaaaaatacgccgttttttggaaactcagtgcgacatcttcttcaaacggctgagtaatgcataaacatcggtacgatcTATTATGCTCCGTACGATAATGACGTCATATCCGTTGCCAGACCTGTTGACGAAAAATAAAT-TACGCAG-TTTT-TTTGAGAACCCAGTGCGA-CAT-CT-T----CAAACGGCCGATTTATGCATAAAT--ATCGGTACGATCATGAAGATAAA-TCATTCAGCGATAGAACGTGA--CCGAGTTTGTA-AAAAGTGGTGGCCTATTGACTTTGAAACTCTAATTTTGATCGGGGAA--GGGGACCACGTTTGTTTATTTCATT---GTCTCTTTATATACGTTAGGGGAACTGC------------------------CCACC-CCATC----GTTAAACGTTATTATCCACTCCCCAAGCTCTTG
gi|5 : aactggcgcgtggcattatTTTTTTTCAAATTGGCCACGC-CT--C-A---AAG----CGCGCTA-TCTGATCTGAGTCGCTGAGGCGTTTA---------TGAGTCAATA---------------CTGAAAGCATAAGCATCTCCGTGACTTGGATCGGAAGTCGTTTA--AAATACAGCGAATTTTAACCAATCAGATACGACCCCGTATT-TGCTCCATACGATAATGACGTCATATCCGTTGCCATAATTGTTAA-GGATAAAAAAA--AAGCCG-TTTT-TG-GGGAACTCAGTGCGA-CAT-CT-TC-TTCAAACGGCCGAGTTATGCATAAAC--ATCGGTACAATCTTGAAGATAAA-TCATTCAGCAATAGAACGAGA--CCGGGTTTGTT-AAA
gi|6 : tTCCGTTGCCATAATTGTTGGTGGACAAAAAAA-T--GCTG-TTTA-T--G----CCGA-----A-CAT-TT-ACATTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATAAA-TCATACAGCGATAGAACGAGA--CCGGATTTGTT-AAAATTGATGGCCTATTGACTTAGAAATTCTAATTTTGATCGGGGAA--GGGGTCAACGTTTGTTTCTTTCC-T---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTC
gi|7 : gccaatttgaaaaaaaataaagccgagaatatccgaacatgctactTCCGTTGCCACAGATGTTGGTGGACAACAAT--TATGCTG-TTAT-C--G-----CCA-T---A-CAT-TTACC-TTTAAACA-TCGTTTT-TGCTTTA-CTTACCGGATCGATCTTGAAGATGAA-TTATTGAACGATAGAACGAGA--CCAGGTTTGTT-AAAATTGATGGCCTATTGACTTAGAAACTCTAATTATGATCGGGGAA--GGGGTCC
gi|8 : aaagccgaggttatccgaacatgctactTCCGTTGCCACAGATGGTGGTGGACAACAAT--TATGCTG-TTT---------ACGC----CGAACATTCA-CC-TTTAAACA-TCGTTTT-TGCTT-----------TAC---TTTCCGGATAAG-TTATTTAGCGATATAACGAGAGACCGGGTTTGTT-AAAATCAATAGCCTATTGACTAAGAAACTCTAATTTTTATCGGGGAA--GTGGTCCACGTTTGTTTGTTNNNNN---N-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNC-CCCCAAGCTCCTccttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaagcttctgtg
gi|9 : tATCTTGCAGTTAAA-TCATTCAGCGATAGAACGAGA--CCGGGTTTTTTCAAAATTGATTGCCTATTGACTTAGAAATTACAATTTTGATCGGGGAA--GGGGTCCACGTTTGTTTCTTTCCTTNNNN-----NNNNNNNNNNNNNNNNNNNNNN------------------------NNNNN-NNNNN----NNNNNNNNNNNNNNNNNNNNCCCCAAGCTCCTGTtt