lowQualScore : 1 111111111111 111111111111111 1 11111111111111 4444444444444444444444444444444 1111111 1 1 1 222222222222222222222 111 1
lowQualScore : 0 0 0 888888 6666 2 2 555 555555555555 0 3 555 2 2 7 2 2 2 2 444 666 5555 999999999999999 2 444 0 2 2 66666 2 444 0 2 1 33 66 1 3 77777 2 555 44 888 3 555 2 9999 666 88888 44 555 77777777777777 3 6666666666666666666666666666666 1111111 0 3 3 0 3 4 3 99999 6 0 7777 888888 3 666666666666666666666 44 666 3 55 777 4 4 4 555 5 9 6 0 0
lowQualScore : . . . ...... .... . . ... ............ . . ... . . . . . . . ... ... .... ............... . ... . . . ..... . ... . . . .. .. . . ..... . ... .. ... . ... . .... ... ..... .. ... .............. . ............................... ....... . . . . . . . ..... . . .... ...... . ..................... .. ... . .. ... . . . ... . . . . .
lowQualScore : 5 1 6 222222 1111 9 9 000 111111111111 2 9 000 7 7 2 5 5 5 5 444 999 3333 666666666666666 5 777 4 8 5 22222 2 777 9 9 9 99 66 6 4 11111 1 444 22 555 1 777 4 9999 888 33333 66 888 77777777777777 6 5555555555555555555555555555555 8888888 1 3 3 0 3 8 3 66666 8 7 1111 888888 1 222222222222222222222 22 444 5 00 000 0 0 0 888 0 2 0 0 2
consensus : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTAACT---TTTCATCTT-AA-ATCNA-TA-TT-T-TCA---TCTAAGA---TT----AA----TACT----NATT-CTTAAGTGTTATTCAGAAAGCATCTTAGCGA-ATAAA-----TCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGCTCTGAGGTG-----TATTAACTATTT---AAGAAATTTC--T---TAA-AACCTGTGACTT-CG-TTTAAAGA-AATGATAC-----T--T---GCACC----------A---AA-AGT------A-------------T----------GTA-------TTTGAGCACGA-T-TT-C-AGCA-TAN----ATGTGTCATTAGGC----TTTAT------CAACTG-CTACTA---------------------A--AGAT---ATACA--TTTTGTA---TTGATTTACCT-TTATTCTT-TATTTGTAGTT-GACC--TATTTATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
Reference ( gi|3 ) : CTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTAACT---TTTCATCTT-AA-ATCCA-TA-TT-T-TCA---TCTAAGA---TT----AA----TACT----TATT-CTTAAGTGTTATTCAGAAAACATCTTAGCGA-ATAAA-----TCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGCTCTGATGTG-----TATTAACTATTT---AAGAAATTTC--T---TAA-AACCTGTAACTT-GA-TTTAAAGA-AATGATAC-----T--T---GCACC----------A---AA-AGT------A-------------T----------GTA-------TTTGGGCACGA-T-TT-C-AACA-TAC----ATGTGTCATAAGAC----TTTAT------CAACTG-CTACTA---------------------A--AGAT---ATACA--TTTTGTA---TTGATTTACCT-TTATTCTT-TATTTGTAGTT-GACA--TATTTATCCTTTATGTATACTTGACAGTTAAAGCAATTTG-TCTGTCTGTCCGTCCGT
gi|2 : CTGGGGCCGTATTCATGAAGCTTATTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AA-------------------AACT---TTTCATCTT-AA-ATCAA-TA-GT-T-TCA---TTTAAGA---TT----AA----TACT----TATT-CTTAAGTGTTATTCAGAAAGTATCTTAGCGG-ATAAA-----TCGTCTGAGAATA---GGACGTTTTTTTCTCTTAACTGT--ATGATAGCTCTGAGGTG-----TAATAACTATTT---ATGAAATTTC--T---CAA-AACCTGTGACTT-GT-TACAAAGA-AAGTATAC-----T--T---ATACC----------A---AA-AGT------A-------------T----------GTA-------TTTGAGCACGA-T-TT-C-AGCA-TAC----CTGTGTCATCAGTA----TTTAT------CAACTG-CCACTA---------------------A--AGAT---ATACA--TTTTGTA---TTGATTTACCT-TTATTCTT---TTTGTAGTT-GACC--TTTTTGTCCTTTATGTGTACGTGACAGTTAAAGCGGTTGGTTTTATTTGTCCGTCCGT
gi|11 : CTGGGGCCATATTCATCAAACTT-TAAG------AG----TTAA-GTTCTTCTAAGATA-TTCTTAAATA--cagtccgtccgtctttgtttgttcgtttgtttgt
gi|16 : gcCTGGGACCACATTCATGGAGTTTATTAA------AT----TTAT-TTT--------------------TA--T--------TGTTTCA-------TTCATTTT-AA-ATCCA-TA-TT-T-T---------------------AA-----ACT----TA------AAG----ATTAAGAATACATCTTAGCGA--TAAC-----TCATCTTAGAATA---GAACATGTGTC-CTCTTAATTTT--ATGATAGTTAAGAGGTG-----gaatttataaagcgtcttagcgaataaatcgttttagaatagaacattttccatttcaactttaagataggtaccttaactattcaagaaatttgttaaaaatggtggtttcagtttagacagtgataatttcagcacagaagaataagaaaggtaaggtaagtttgcatgattttcagcatgaatgtgccactaggcttgattaactgcttctaaatactacagacatccctgttcggctattatgttgttataattcaacattatgttcgagttgtcattgagctatttactatatagtattacagcc
gi|8 : cTGGGGCCGTATTCATAAAGCTTCTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAT--T--------TTTCTTAACT---TTTCATCTT-AA-ATCAA-TA-TT-T-TCA---TCTAAGA---TT----AA----AACT----ATTT-CTTAAGTGTTATTCAGAAAGCATCTTAGCGA-ATAAA-----TCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAACTCTGAGGTG-----TACTAACTATTT---AAGAAATTTC--T---TAA-AACGTATAACTT-GG-TTTAAAGA-AATGATAC-----T--T---ACACC----------A---AA-AGT------A-------------T----------GTA-------TTTGAGCACGC-T-TT-C-AGCA-TAC----ATA---CCTTAGAC----TTTAT------CAACTG-CTATTA---------------------A--AGAT---ATACA--TTTTGTA---TTGATTTACCT-TTATTCTT-TATTTGTAGTT-GACC--TATTTAACCTT
gi|17 : TGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TTTCTTAACT---TTTCACCTT-CA-AT-CA-TT-TTGT-TCA---TCTAGGA---TT----AA----CACT----TATT-CTTAAATATTATTCAGAAAATATCT---CAA-ATAAA-----TCA
gi|19 : TGGGGCCATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA-----------CTTCTTAACT---TTTCATCTT-AA-ATCAA-TA-TT-T-TCA---TCTAAGA---TT----A
gi|1 : GGGGCCCTATTCATAAATGTTTTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAA--T--------TTTCTTAACT---TTTCATCTT-AA-ATCCA-TA-TT-T-TCA---TCTAAGA---TT----AA----AACT----ATTT-CTTAAGTGATATTCAGAGAGCATCTTAGCGA-ATAAA-----TCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAACTTTGAGGTG-----TATTAACTATTT---AAGAAATTTC--T---TAA-AACCTATAACTT-GG-TTTAAAGA-AATGATTC-----T--T---ACACC----------A---AA-TGT------A-------------T----------GTA-------TTTGAGCAAGA-T-TT-C-AGCA-TAC----ATGTGTCATTAGAC----TTTAT------CAACTG-CTATTA---------------------A--AGAT---ATACA--TTTTGTA---TTGATTTATCT-TTATTCTT-TATTTGTAGTT-GACC--TATTTATCCTTTATGTAACCTTGACAGTTAAAGCGATTTG-TCTGTATGTCTCTCTGTg
gi|7 : ataaattgtataccaGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTTT-TCTCATCTAAGATA-TTC---AGT----------------TT---T---GTTCATCTT-AA-ATCCA-TA-TT-T-TCA---TCTAAGA---TT----AA----AAAT----AAAT-CTTAAGTAGAATTCATAAAGCGTCTTAGCGA-A-AAA-----TCATCTTAGAACA---AAGTGTTTTTC-CTATCAACTTT--CAGATGGGTCAGAGGTA-----TCTTAACTATCT---AAGAAATTTC--T---TAA-AAATGGCGCCTTCAA-TTTAGA-A-AGTGGCAT-----T--T---GCctgtctgtctgtcagtccatccgcccgtccgact
gi|14 : GGGGCCGTATCCACAAAGCATCTTGGGAAAAAATCACCTTATATTT----TAAGATT-TTC---CTTAGTT--------TTTCTT--CT---TTT--TC-T-AA-GTT------TT-T-TC----CCTTAGA---TTTTAAAA----TA-------ATT-CTTAAGTACTATCCATAAAACTTTTTACTTA---AAG-----TAGTCTA---------------TTTTT-TTCTTAAATATTGAGGA-A--TC--ATGGGAGCTTTCTTAATT-TTT---AAGAAATTTC--T---TAA-Atgcagagaagaataagaaaacaactaataataggataagtatgaacgattttcagcataaatatgtcactggggtttagtaactgctatcaaatagacaccccttttacacttacatgttgttgttatagacccatta
gi|10 : aGAGCTATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATAATTC---AATA--TAACCTCAGTTTTTCGTCTCAATTTCATCTT-AT-TTTCACTA-TT-T-TCA---TCTAAGA---TT----AT----TACT----TATT-AATAAGCGTTATTCAGAAAGCATCTTAGCTA-ATGAA-----ACATCTAAGAATA---AAACGCTTTTC-CTCTCAACTTC--CATATAGCTTTGAGGTG-----TATTTACTTTTTGACAAAAAATTTC--T---TAAGAACTTG--ACTT-TG-TTTAAA-A-AATAATGC-----A--T---GCACC--------------TA-TGC------A-------------T----------GTA-------TTTGTGCACGA-T-TT-T-AGCA-TGA----ATGACTCATTAGGC------TAC------TAACTA-CTAC----------------------------AT---ATACA--TTTTGCT---TTGATTTAC--------CTT-TATTTGTAGTTCGACtat
gi|9 : tGACCATATTCATAAAGCTTTTAAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TGTCTTAACT---TTTCTTCTT-AA-ATCAA-TA-TT-T-TCA---TCTAAGA---TT----AA-----ATT----TATTTCTTAAGTGTTATTCAGAAAG-ATCTTAGCGA-AAAAA-----TCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--GAGATAGCTCTGAGGTG-----TATTAACTATTT---AAGAAATTAC--T---CAA-AACCTGTGACTT-GG-TTTAAAGA-AATGATAC-----T--T---ACACC----------A---AA-AGT------A-------------T----------GTA-------TTTGAGCATGA-C-TT-C-AGCA-TAC----ATGTGTCATTAGAT----TTTAT------CAACTG-CTACTA---------------------A--AGAT---ATACA--TTTTGTA---TTGATTTACCT-TTATTCTT-TATTTGTAGTT-GACC--CATTTATCtgt
gi|5 : GGTCATACTCATTAAGTTCCTTAG------AC----TTCT-TTACGTCTAAAATA-TTC---CATA--T--------TTTCTTAGAT---TT-CATCTG-AA-AACAA-TA-GT-A-TCA---TTTAAAA---TT----AA----TAAT----AAAC-CTTAAGCGTCAATCAGAAAGCATCTTAGCGA-ATAAA-----TAGTCTAAGAATA---GAACAATTTTC-CTGTAATCTTT--AAGATAGC-----------------------TTT---GAGATATAT-----------------TGACTT-CA-TTTTAA---ATTCATAT-----T--T---GCACT----------A---AACACT------G-------------T----------GTA-------ATTGTGCACGA-T-TTTC-AGTA-CGA----ATGTGTCATTACAC----ATAATGAATTGCAACTAACTACTA---------------------C--AGAC---G-ACAGCTTTTTCAAGCTTAAATACCCG-TTATATTG-TATTTGTAA---GATATTTATTGATTACTCATGTGTACTTGAC
gi|6 : acaaatgtaaatacccgtGCCATGTTAATTAAGCTTCTTAT------AT----TTAT-TTTCATCTAAGATA-TTC---AAT---T--------TGTTTTAGTT---TTTCATCTTCAACATCAA-TA-TT-T-TCA---TCTAAGA---TT----AA----TAAT----AAAT-CTTAAGTAGAATTCATTAAGCGTCTTGGTGA-ATAAA-----TCATCTTCAAATA---G---GT-------------CTG---AAG-TA--TCTA--------------AACTATCT------AAATGTA--TATATAA-AA-TGGGAGCTT-CA-GTTAAGAC-AGTGATAT-----T--T---GCAGC----------A---GA-GG---------------------C----------GCA-------TAAGAAAACAA-C-TA-CAAACAGTGCAAGTATGTGTCACTGGGC----TTCAG------TAGCTG-CTACTC---------------------A--ATACTAGAGACA--TCCCG----------TTACAT-GTAGGCTTACATTT-T-GTT--ATA---ATTTACCCATTATGT
gi|4 : ATAAAGCTTTTTAG------AT----TTTT-TTTCATCTAAGACA-TTC---AACA--T--------TTTCTTAGTG---TTTCATCTT-AA-ATTAA-TATTT-T-TCA---TCTGAAA---TG----AA-------------------------------AAAAAA------AGTAAAATAAT-----TCATCTAAGAATATATTAAAG-TTTTC-CTCTTAACTGT--AAGATATGTTTTAGGTA-----TATTGACTGCCT---ACG--ATTTCTTT---TAA-AATCTATAATTT-TA-TTCAAAAA-CATCATATAAAAATTAT---GTACA----------AATGAA-AGTAAAACAA-------------TTACATAAAAGGTA-------TTTGTGCACAA-TATT-A-AGCA-AAA----ATGTATCTTTGGGCTTTATTTAT------CAACTG-CCATTACCTATTACAGGCAGCCCTTTCA--GGAT---A-ACA--TTTGTTA----TAATTTACCTATTACCCTT-T-TATGTCATT-GACC--TATTTATtcgagtaaccattggcctattaactatcaaatattacagc
gi|12 : ttgtaT---TTTTATCTT-AA-ATCCA-AA-TT-T-TCA---TCGAAGA---TT----AA----AACT----ATTT-CTTAAGTGTTATTCAGAAAGCATCTTAGCGA-AGAAA-----TCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGCTCTGAGGTG-----TATTAACTATTT---AAGATTTTTC--T---TAA-AACCTGTAACTT-GG-TTTAAAGA-AATTATAC-----T--T---GCACC----------A---AA-AGT------G-------------T----------GTA-------TTTGAGCACGA-T-TT-C-AGCA-TAC----ATGTGTCATTAGAC----TTAAT------CAACTG-CTACTT---------------------A--AGAT---ATACA--TTTTGTA---TTGATTTACCT-TTATTCTT-TATTTGTAGTT-GACC--TATTTATCCTa
gi|19 : TCTT-AG-ATT---TA-TT-T-TCA---TCTAAGATATTC----AA----TAC-------TT-CTTAACTTTT----------CATCTTA---A-ATCAATATTTTCATCTAAGATTA---G
gi|11 : tggggccatattcataaagctCCA-TA-TT-CATCAAACTTTAAGAG--TT----AAGTTCTTCTAAGATATT-CTTAAATAGAATTTATAAAGCGTCTTAGCGA-ATAAA-----TCGTTTTAGAATA---GAACATTTTCC-ATTTCAACTTT--AAGATAG-------GTA-----CCTTAACTATTC---AAGAAATTTG--T---TAA-AAATGGTGGTTT-CAGTTT--AGACAGTGATAA-----T--TTCAGCA-C----------A---GA-AGA------A-------------TAAGAAAG---GTAAGGTAAGTTT--GCATGATT-TT-C-AGCA-TGA----ATGTGCCACTAGGC----TTGAT------TAACTG-CTTCTA---------------------A--A
gi|13 : gcctggggT-CTTAAGTAGAATTCATTAAGCGTCTTAGTGA-ATAAA-----TCATCT-------------------------TCAA---------ATATGTCTGAAGTA-----TCTCAACTATCT---AA-AAATATC--TA--TAA-AATGGG-AGCTT-CA-GTTAAGAC-AGTGATAT-----T--T---GCAGCAGAGACGCATA---AG-AAT------ACAACTACACGCAAT----------GCA-------AGTATGCACGA-T-TTTC-AGCA-TGA----GTGTGTCACTGGGC----TTCAA------TAACTG-CTACTC---------------------A--Atactacagacatccctgttcggctattatgttgttataattcaacattatgttcgagttgtcattgagctatttactatatagtattacagcc
gi|7 : aaACGA-T-TTTC-AGCA-TAA----ATATGTCACTGGGG----TTTAG------TAACTG-CTATCA---------------------AATAGAC---ACCCC--TTTTtactacagacatccccgttacatgtaggcggacatcttgttataatttacacattatgttcgagtaaccattgaccttattacagcc
gi|15 : ggggccgtattcataaagcttcttagattttttctcatctaagatattcagttttgttcatcttaaatccatattttcatctaagattaaaaataaatcttaagtagaattcataaagcgtcttagcgaaaaatcatcttagaacaaagtgtttttcctatcaactttcagatgggtcagaggtatcttaactatctaagaaatttcttaaaaatggcgccttcaatttagaaagtggcatttgctgcagagaagaataagaaaacaactaataataggataagtatgaAT------CAACTG-CTACTA---------------------A--AGAT---ATACT--TTTTGTA---TTGATTTACCT-TTACTCTT-TATTTGTAGTT-GACC--TATTTATCCTTTATGTTTAC-TGACAGCTAAAGCGATTTG-TCTGTCTGTCTGTCCGTacacttacatgttgttgttatagacccatta
gi|21 : ATTTG-TCTGTCCGTCCGTCCGTccgtacgtcctcctcactctcttccgtctgtccgtctttgttcgttcgttcgttcgt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTTTATTTGTAACCTGTCTGTCTGTTTGCCTGTCCGTCCGTCCGTCCGTCCGTCTGTCTGTCTGTAAGAATGATTAGATGAATACATCAATAGACACATAAATGGATAATAATAATAATAATAAT
Unaligned ( gi|20 ): TGCCTGTCTGCCTGCCTGCCTGTCGCCCGTCCGTCCGTCTGTTTGTCAACGTGACAATTAAATGATAATTAAT
Unaligned ( gi|22 ): CAATTTTATTTTGCCTGTCTGTCTGTCTGTCTGTCCGTCCGCCCGCCC
Unaligned ( gi|23 ): TGTTTGTCTGTCTGTCAGTCCATCCGTCCATCCATCTGA
Unaligned ( gi|24 ): GTGTCTTGTATCTGTTAAACTCCTGATATACATGCACC
Alignments
lowQualScore : 111111111111 1 11 444444444444444444444444444444444444444444444444444444444444444 1111111 1111111 222222222222222222222222 222222222222222222
lowQualScore : 1 777777 5555 2 2 444 222222222222 3 444 2 2 6 2 2 2 33 3 1 2 1 2 44 3 444 1 2 2 33 2 555 33 777 66 6 22 3 3 3 77777 44 555 999999999999999999999999999999999999999999999999999999999999999 3 4444444 1 9 3 3 888888 1 6666 888888 2 8888888 555555555555555555555555 222222222222222222 44444 888888 555 88888 6 0 3 555 3 666 3 8
lowQualScore : . ...... .... . . ... ............ . ... . . . . . . .. . . . . . .. . ... . . . .. . ... .. ... .. . .. . . . ..... .. ... ............................................................... . ....... . . . . ...... . .... ...... . ....... ........................ .................. ..... ...... ... ..... . . . ... . ... . .
lowQualScore : 3 777777 7777 7 7 777 888888888888 0 777 7 7 2 7 7 5 44 6 1 9 1 5 00 7 777 8 7 7 77 7 000 99 999 88 2 11 1 3 1 77777 22 444 666666666666666666666666666666666666666666666666666666666666666 1 2222222 8 2 1 1 888888 0 5555 222222 9 6666666 444444444444444444444444 777777777777777777 55555 888888 888 33333 7 4 3 888 3 444 2 0
consensus : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTAACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TTAA-ACTNATT-CTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
Reference ( family-2155 ) : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTAACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TTAATACTNATT-CTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
gi|1 : GGGGCCCTATTCATAAATGTTTTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAA--T--------TTTCTTAACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TTAAAACTATTT-CTTAAGTGATATTCAGAGAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TTTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTATAA-CTTG-GTT-TAAAGA-AATGATTC-----T--T---AC----------------------AC-CA---AA-TGT------AT-------------------G-TA-------TTTGAGCAAGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTATCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTAACCTTGACAGTTAAAGCGATTTG-TCTGTATGTCTCTCTGT
gi|10 : ataaattgtataccaGAGCTATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATAATTC---AATA--TAACCTCAGTTTTTCGTCTCAATTTCATCTT-AT-TTTCACTA-TT-TTCATCTAAGA--TTATTACTTATT-AATAAGCGTTATTCAGAAAGCATCTTAGCTAATGAAACATCTAAGAATA---AAACGCTTTTC-CTCTCAACTTC--CATATAGC-TTTGAGGTGTATTTACTTTTTGACAAAAAATTTC--T---TAAGAACT-TGA-CTTT-GTT-TAAA-A-AATAATGC-----A--T---GC----------------------AC-C----TA-TGC------AT-------------------G-TA-------TTTGTGCACGA-T-TT-TA------GCATGAATGACTCATTAGGC------TAC------TAACT-AC-------TAC----------------------------ATA------------------TAC--A--TT------TTGCT---TTG-----ATTTAC--------CTTTATTTGT-A---GTTCGACctgtctgtctgtcagtccatccgcccgtccgact
gi|11 : tCTGGGGCCATATTCATCAAACTT-TAAG------AG----TTAA-GTTCTTCTAAGATA-TTCTTAAATA--tgt
gi|11 : gc-TTCTTCTAAGA--T--------ATT-CTTAAATAGAATTTATAAAGCGTCTTAGCGAATAAATCGTTTTAGAATA---GAACATTTTCC-ATTTCAACTTT--AAGAT--------AGGTACCTTAACTATTC---AAGAAATTTG--T---TAAAAATGGTGG-TTTCAGTT-T--AGACAGTGATAA-----T--TTCAGC----------------------A--CA---GA-AGA------ATAAGAAAG------------G-TAAGGTAAGTTT--GCATGATT-TT-CA------GCATGAATGTGCCACTAGGC----TTGAT------TAACT-GCTTCTAAATACTA---------------------C--AGACA------------------TCCCTG--TTCGGCTATTATG---TTGTTATAATTCAACA-TTATGTTCGAGTTGT-C---ATT-GAGCTATT---TA--CTATATA-GTATT--ACAGgaatttataaagcgtcttagcgaataaatcgttttagaatagaacattttccatttcaactttaagataggtaccttaactattcaagaaatttgttaaaaatggtggtttcagtttagacagtgataatttcagcacagaagaataagaaaggtaaggtaagtttgcatgattttcagcatgaatgtgccactaggcttgattaactgcttctaaatactacagacatccctgttcggctattatgttgttataattcaacattatgttcgagttgtcattgagctatttactatatagtattacagcc
gi|12 : gcctggggccatattcatcaaactttaagagttaagT---TTTTATCTT-AA-ATCCA-AA-TT-TTCATCGAAGA--TTAAAACTATTT-CTTAAGTGTTATTCAGAAAGCATCTTAGCGAAGAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGATTTTTC--T---TAAAACCTGTAA-CTTG-GTT-TAAAGA-AATTATAC-----T--T---GC----------------------AC-CA---AA-AGT------GT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTAAT------CAACT-GC-------TACTT---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTcc
gi|13 : T-CTTAAGTAGAATTCATTAAGCGTCTTAGTGAATAAATCATCT-------------------------TCAA---------ATATG-TCTGAAGTATCTCAACTATCT---AA-AAATATC--TA--TAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GCAGCAGAG---------------ACGCA---TA-AGA------ATACAACTACACGCAATGCAAG-TA-------T----GCACGA-T-TTTCA------GCATGAGTGTGTCACTGGGC----TTCAA------TAACT-GC-------TACTC---------------------A--A
gi|14 : aaGGGGCCGTATCCACAAAGCATCTTGGGAAAAAATCACCTTATATTT----TAAGATT-TTC---CTTAGTT--------TTTCTT--CT---TTT--TC-T-AA-GTT------TT-TTC-CCTTAGATTTTAA-AATAATT-CTTAAGTACTATCCATAAAACTTTTTACTTA--AAGTAGTCTA---------------TTTTT-TTCTTAAATATTGAGGA-ATCATGGGAGCTTTCTTAATT-TTT---AAGAAATTTC--T---TAAAtactacagacatccccgttacatgtaggcggacatcttgttataatttacacattatgttcgagtaaccattgaccttattacagcc
gi|15 : aAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--T--TT------TTGTA---TTG-----ATTTACCT-TTACTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTTTAC-TGACAGCTAAAGCGATTTG-TCTGTCTGTCTGTCCGTtat
gi|16 : CTGGGACCACATTCATGGAGTTTATTAA------AT----TTAT-TTT--------------------TA--T--------TGTTTCA-------TTCATTTT-AA-ATCCA-TA-TT-TT-------------AA-ACTTA------AAG----ATTAAGAATACATCTTAGCGA-TAACTCATCTTAGAATA---GAACATGTGTC-CTCTTAATTTT--ATGATAGT-TAAGAGGTGccgtacgtcctcctcactctcttccgtctgtccgtctttgttcgttcgttcgttcgt
gi|17 : cTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TTTCTTAACT---TTTCACCTT-CA-ATC-A-TT-TTGTTCATCTAGGA--TTAACACTTATT-CTTAAATATTATTCAGAAAATATCT---CAAATAAATC
gi|19 : TGGGGCCATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA-----------CTTCTTAACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TTAa
gi|2 : CTGGGGCCGTATTCATGAAGCTTATTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AA-------------------AACT---TTTCATCTT-AA-ATCAA-TA-GT-TTCATTTAAGA--TTAATACTTATT-CTTAAGTGTTATTCAGAAAGTATCTTAGCGGATAAATCGTCTGAGAATA---GGACGTTTTTTTCTCTTAACTGT--ATGATAGC-TCTGAGGTGTAATAACTATTT---ATGAAATTTC--T---CAAAACCTGTGA-CTT--GTTACAAAGA-AAGTATAC-----T--T---AT----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACCTGTGTCATCAGTA----TTTAT------CAACT-GC-------CACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTT--TTTGT-A---GTT-GACCTTTT---TGTCCTTTATGTGTACGTGACAGTTAAAGCGGTTGGTTTTATTTGTCCGTCCGTg
gi|21 : ATTTG-TCTGTCCGTCCGTCCGTcagtccgtccgtctttgtttgttcgtttgtttgt
gi|3 : tttctttaaatctgtatgtatCTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTAACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TTAATACTTATT-CTTAAGTGTTATTCAGAAAACATCTTAGCGAATAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGATGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTAA-CTTG-ATT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGGGCACGA-T-TT-CA------ACATACATGTGTCATAAGAC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACATATT---TATCCTTTATGTATACTTGACAGTTAAAGCAATTTG-TCTGTCTGTCCGTCCGTctatctgtctgtacgtcagtca
gi|4 : ATAAAGCTTTTTAG------AT----TTTT-TTTCATCTAAGACA-TTC---AACA--T--------TTTCTTAGTG---TTTCATCTT-AA-ATTAA-TATTT-TTCATCTGAAA--TGAA------------AA---------AAAAAGTA-------AAATAATTCATCTAAGAATATATTAAAG-TTTTC-CTCTTAACTGT--AAGATATG-TTTTAGGTATATTGACTGCCT---ACG--ATTTCTTT---TAAAATCTATAA-TTTT-ATT-CAAAAA-CATCATATAAAAATTAT---GT----------------------AC-AAATGAA-AGTAAAACAATTACATAAAAG---------G-TA-------TTTGTGCACAA-TATT-AA------GCAAAAATGTATCTTTGGGCTTTATTTAT------CAACT-GC-------CATTACCTATTACAGGCAGCCCTTTCA--GGATA-------------------AC--A--TT------TGTTA----TA-----ATTTACCTATTACCCTTT-TATGT-C---ATT-GACCTATT---TAT
gi|5 : ttgtaGGTCATACTCATTAAGTTCCTTAG------AC----TTCT-TTACGTCTAAAATA-TTC---CATA--T--------TTTCTTAGAT---TT-CATCTG-AA-AACAA-TA-GT-ATCATTTAAAA--TTAATAATAAAC-CTTAAGCGTCAATCAGAAAGCATCTTAGCGAATAAATAGTCTAAGAATA---GAACAATTTTC-CTGTAATCTTT--AAGATAGC-TTTGAGATATATTGAC--TTC---A-------TT--T---TAAA----------TTC-AT---------------AT-----T--T---GC----------------------AC-TA---AACACT------GT-------------------G-TA-------ATTGTGCACGATT-TT-CA------GTACGAATGTGTCATTACAC----ATAATGAATTGCAACTAAC-------TACTA---------------------C--AGACG-------------------AC--AGCTT------TTTCAAGCTTA-----AATACCCG-TTATATTGTATTTGTAA---GAT--ATTTATT---GATTACTCATGTGTACTTGACa
gi|6 : acaaatgtaaatacccgtGCCATGTTAATTAAGCTTCTTAT------AT----TTAT-TTTCATCTAAGATA-TTC---AAT---T--------TGTTTTAGTT---TTTCATCTTCAACATCAA-TA-TT-TTCATCTAAGA--TTAATAATAAAT-CTTAAGTAGAATTCATTAAGCGTCTTGGTGAATAAATCATCT-------------------------TCAA---------ATAGG-TCTGAAGTATCTAAACTATCT------AAATGTA--TATATAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GC----------------------AG-CA---GA-GG--------C-------------------G-CA-------TAAGAAAACAA-C-TA-CAAACAGTGCAAGTATGTGTCACTGGGC----TTCAG------TAGCT-GCTACTCAATACTA---------------------G--AGACATCCCGTTACATGTAGGCTTAC--A--TT------TTGTT---ATA-----ATTTACCCATTATGTTCGA---GT-AACCATT-GGCCTATTAACTATC
gi|7 : GGGGCCGTATTCATAAAGCTTCTTAG------AT----TTTT-TCTCATCTAAGATA-TTC---AGT----------------TT---T---GTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TTAAAAATAAAT-CTTAAGTAGAATTCATAAAGCGTCTTAGCGAA-AAATCATCTTAGAACA---AAGTGTTTTTC-CTATCAACTTT--CAGATGGG-TCAGAGGTATCTTAACTATCT---AAGAAATTTC--T---TAAAAATGGCGC-CTTCAATT-TAGA-A-AGTGGCAT-----T--T---GCTGCAGAGAAGAATAAGAAAACAAC-TA---AT-AAT------AG-------------------GATAAG-----TATGA--ACGATT-TT-CA------GCATAAATATGTCACTGGGG----TTTAG------TAACT-GC-------TATCA---------------------AATAGACA------------------CCC--C--TT------TTaaatattacagc
gi|8 : TGGGGCCGTATTCATAAAGCTTCTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAT--T--------TTTCTTAACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TTAAAACTATTT-CTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TCTGAGGTGTACTAACTATTT---AAGAAATTTC--T---TAAAACGTATAA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGC-T-TT-CA------GCATACATA---CCTTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TAACCTTacacttacatgttgttgttatagacccatta
gi|9 : GACCATATTCATAAAGCTTTTAAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TGTCTTAACT---TTTCTTCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TTAA-ATTTATTTCTTAAGTGTTATTCAGAAAG-ATCTTAGCGAAAAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--GAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTAC--T---CAAAACCTGTGA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCATGA-C-TT-CA------GCATACATGTGTCATTAGAT----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCCATT---TATC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTATTTGTAACCTGTCTGTCTGTTTGCCTGTCCGTCCGTCCGTCCGTCCGTCTGTCTGTCTGTAAGAATGATTAGATGAATACATCAATAGACACATAAATGGATAATAATAATAATAATAAT
Unaligned ( gi|20 ): TGCCTGTCTGCCTGCCTGCCTGTCGCCCGTCCGTCCGTCTGTTTGTCAACGTGACAATTAAATGATAATTAAT
Unaligned ( gi|22 ): CAATTTTATTTTGCCTGTCTGTCTGTCTGTCTGTCCGTCCGCCCGCCC
Unaligned ( gi|23 ): TGTTTGTCTGTCTGTCAGTCCATCCGTCCATCCATCTGA
Unaligned ( gi|24 ): GTGTCTTGTATCTGTTAAACTCCTGATATACATGCACC
Alignments
lowQualScore : 111111111111 1111 11 444444444444444444444444444444444444444444444444444444444444444 1111111 1111111 222222222222222222222222 222222222222222222
lowQualScore : 1 777777 5555 2 2 444 222222222222 44 444 2 2 6 2 2 2 33 2 9999 2 55 44 3 444 1 2 2 33 2 555 33 777 66 6 22 3 3 3 77777 44 555 999999999999999999999999999999999999999999999999999999999999999 3 4444444 1 9 3 3 888888 1 6666 888888 2 8888888 555555555555555555555555 222222222222222222 44444 888888 555 88888 6 0 3 555 3 666 3 8
lowQualScore : . ...... .... . . ... ............ .. ... . . . . . . .. . .... . .. .. . ... . . . .. . ... .. ... .. . .. . . . ..... .. ... ............................................................... . ....... . . . . ...... . .... ...... . ....... ........................ .................. ..... ...... ... ..... . . . ... . ... . .
lowQualScore : 3 777777 7777 7 7 777 888888888888 88 777 7 7 2 7 7 5 44 5 3333 9 44 00 7 777 8 7 7 77 7 000 99 999 88 2 11 1 3 1 77777 22 444 666666666666666666666666666666666666666666666666666666666666666 1 2222222 8 2 1 1 888888 0 5555 222222 9 6666666 444444444444444444444444 777777777777777777 55555 888888 888 33333 7 4 3 888 3 444 2 0
consensus : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
Reference ( family-2155 ) : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
gi|1 : GGGGCCCTATTCATAAATGTTTTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TT-AA-AACTAT-TTCTTAAGTGATATTCAGAGAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TTTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTATAA-CTTG-GTT-TAAAGA-AATGATTC-----T--T---AC----------------------AC-CA---AA-TGT------AT-------------------G-TA-------TTTGAGCAAGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTATCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTAACCTTGACAGTTAAAGCGATTTG-TCTGTATGTCTCTCTGT
gi|10 : ataaattgtataccaGAGCTATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATAATTC---AATA--TAACCTCAGTTTTTCG-TCTCAATTTCATCTT-AT-TTTCACTA-TT-TTCATCTAAGA--TT-ATTA-CTTA-TTAATAAGCGTTATTCAGAAAGCATCTTAGCTAATGAAACATCTAAGAATA---AAACGCTTTTC-CTCTCAACTTC--CATATAGC-TTTGAGGTGTATTTACTTTTTGACAAAAAATTTC--T---TAAGAACT-TGA-CTTT-GTT-TAAA-A-AATAATGC-----A--T---GC----------------------AC-C----TA-TGC------AT-------------------G-TA-------TTTGTGCACGA-T-TT-TA------GCATGAATGACTCATTAGGC------TAC------TAACT-AC-------TAC----------------------------ATA------------------TAC--A--TT------TTGCT---TTG-----ATTTAC--------CTTTATTTGT-A---GTTCGACctgtctgtctgtcagtccatccgcccgtccgact
gi|11 : tCTGGGGCCATATTCATCAAACTT-TAAG------AG----TTAA-GTTCTTCTAAGATA-TTCTTAAATA--tgt
gi|11 : gc-TTCTTCTAAGA--T----------A-TTCTTAAATAGAATTTATAAAGCGTCTTAGCGAATAAATCGTTTTAGAATA---GAACATTTTCC-ATTTCAACTTT--AAGAT--------AGGTACCTTAACTATTC---AAGAAATTTG--T---TAAAAATGGTGG-TTTCAGTT-T--AGACAGTGATAA-----T--TTCAGC----------------------A--CA---GA-AGA------ATAAGAAAG------------G-TAAGGTAAGTTT--GCATGATT-TT-CA------GCATGAATGTGCCACTAGGC----TTGAT------TAACT-GCTTCTAAATACTA---------------------C--AGACA------------------TCCCTG--TTCGGCTATTATG---TTGTTATAATTCAACA-TTATGTTCGAGTTGT-C---ATT-GAGCTATT---TA--CTATATA-GTATT--ACAGgaatttataaagcgtcttagcgaataaatcgttttagaatagaacattttccatttcaactttaagataggtaccttaactattcaagaaatttgttaaaaatggtggtttcagtttagacagtgataatttcagcacagaagaataagaaaggtaaggtaagtttgcatgattttcagcatgaatgtgccactaggcttgattaactgcttctaaatactacagacatccctgttcggctattatgttgttataattcaacattatgttcgagttgtcattgagctatttactatatagtattacagcc
gi|12 : gcctggggccatattcatcaaactttaagagttaagT---TTTTATCTT-AA-ATCCA-AA-TT-TTCATCGAAGA--TT-AA-AACTAT-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAAGAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGATTTTTC--T---TAAAACCTGTAA-CTTG-GTT-TAAAGA-AATTATAC-----T--T---GC----------------------AC-CA---AA-AGT------GT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTAAT------CAACT-GC-------TACTT---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTcc
gi|13 : TCTTAAGTAGAATTCATTAAGCGTCTTAGTGAATAAATCATCT-------------------------TCAA---------ATATG-TCTGAAGTATCTCAACTATCT---AA-AAATATC--TA--TAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GCAGCAGAG---------------ACGCA---TA-AGA------ATACAACTACACGCAATGCAAG-TA-------T----GCACGA-T-TTTCA------GCATGAGTGTGTCACTGGGC----TTCAA------TAACT-GC-------TACTC---------------------A--A
gi|14 : aaGGGGCCGTATCCACAAAGCATCTTGGGAAAAAATCACCTTATATTT----TAAGATT-TTC---CTTAGTT--------TTTCTT---CT---TTT--TC-T-AA-GTT------TT-TTC-CCTTAGATTTT-AA-A-ATAA-TTCTTAAGTACTATCCATAAAACTTTTTACTTA--AAGTAGTCTA---------------TTTTT-TTCTTAAATATTGAGGA-ATCATGGGAGCTTTCTTAATT-TTT---AAGAAATTTC--T---TAAAtactacagacatccccgttacatgtaggcggacatcttgttataatttacacattatgttcgagtaaccattgaccttattacagcc
gi|15 : aAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--T--TT------TTGTA---TTG-----ATTTACCT-TTACTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTTTAC-TGACAGCTAAAGCGATTTG-TCTGTCTGTCTGTCCGTtat
gi|16 : CTGGGACCACATTCATGGAGTTTATTAA------AT----TTAT-TTT--------------------TA--T--------TGTTTCA--------TTCATTTT-AA-ATCCA-TA-TT-TT--------------AA-A-CTTA------AAG----ATTAAGAATACATCTTAGCGA-TAACTCATCTTAGAATA---GAACATGTGTC-CTCTTAATTTT--ATGATAGT-TAAGAGGTGccgtacgtcctcctcactctcttccgtctgtccgtctttgttcgttcgttcgttcgt
gi|17 : cTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCACCTT-CA-ATC-A-TT-TTGTTCATCTAGGA--TT-AACA-CTTA-TTCTTAAATATTATTCAGAAAATATCT---CAAATAAATC
gi|19 : TGGGGCCATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA-----------CTTCTTA-ACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-Aa
gi|2 : CTGGGGCCGTATTCATGAAGCTTATTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AA-------------------A-ACT---TTTCATCTT-AA-ATCAA-TA-GT-TTCATTTAAGA--TT-AATA-CTTA-TTCTTAAGTGTTATTCAGAAAGTATCTTAGCGGATAAATCGTCTGAGAATA---GGACGTTTTTTTCTCTTAACTGT--ATGATAGC-TCTGAGGTGTAATAACTATTT---ATGAAATTTC--T---CAAAACCTGTGA-CTT--GTTACAAAGA-AAGTATAC-----T--T---AT----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACCTGTGTCATCAGTA----TTTAT------CAACT-GC-------CACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTT--TTTGT-A---GTT-GACCTTTT---TGTCCTTTATGTGTACGTGACAGTTAAAGCGGTTGGTTTTATTTGTCCGTCCGTg
gi|21 : ATTTG-TCTGTCCGTCCGTCCGTcagtccgtccgtctttgtttgttcgtttgtttgt
gi|3 : tttctttaaatctgtatgtatCTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TT-AATA-CTTA-TTCTTAAGTGTTATTCAGAAAACATCTTAGCGAATAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGATGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTAA-CTTG-ATT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGGGCACGA-T-TT-CA------ACATACATGTGTCATAAGAC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACATATT---TATCCTTTATGTATACTTGACAGTTAAAGCAATTTG-TCTGTCTGTCCGTCCGTctatctgtctgtacgtcagtca
gi|4 : ATAAAGCTTTTTAG------AT----TTTT-TTTCATCTAAGACA-TTC---AACA--T--------TTTCTTA-GTG---TTTCATCTT-AA-ATTAA-TATTT-TTCATCTGAAA--TG-AA-A----A-----------------AAAAAGTA-------AAATAATTCATCTAAGAATATATTAAAG-TTTTC-CTCTTAACTGT--AAGATATG-TTTTAGGTATATTGACTGCCT---ACG--ATTTCTTT---TAAAATCTATAA-TTTT-ATT-CAAAAA-CATCATATAAAAATTAT---GT----------------------AC-AAATGAA-AGTAAAACAATTACATAAAAG---------G-TA-------TTTGTGCACAA-TATT-AA------GCAAAAATGTATCTTTGGGCTTTATTTAT------CAACT-GC-------CATTACCTATTACAGGCAGCCCTTTCA--GGATA-------------------AC--A--TT------TGTTA----TA-----ATTTACCTATTACCCTTT-TATGT-C---ATT-GACCTATT---TAT
gi|5 : ttgtaGGTCATACTCATTAAGTTCCTTAG------AC----TTCT-TTACGTCTAAAATA-TTC---CATA--T--------TTTCTTAGA-----TTTCATCTG-AA-AACAA-TA-GT-ATCATTTAAAA--TT-AATA-ATAA-ACCTTAAGCGTCAATCAGAAAGCATCTTAGCGAATAAATAGTCTAAGAATA---GAACAATTTTC-CTGTAATCTTT--AAGATAGC-TTTGAGATATATTGAC--TTC---A-------TT--T---TAAA----------TTC-AT---------------AT-----T--T---GC----------------------AC-TA---AACACT------GT-------------------G-TA-------ATTGTGCACGATT-TT-CA------GTACGAATGTGTCATTACAC----ATAATGAATTGCAACTAAC-------TACTA---------------------C--AGACG-------------------AC--AGCTT------TTTCAAGCTTA-----AATACCCG-TTATATTGTATTTGTAA---GAT--ATTTATT---GATTACTCATGTGTACTTGACa
gi|6 : acaaatgtaaatacccgtGCCATGTTAATTAAGCTTCTTAT------AT----TTAT-TTTCATCTAAGATA-TTC---AAT---T--------TGTTTTA-GTT---TTTCATCTTCAACATCAA-TA-TT-TTCATCTAAGA--TT-AATA-ATAA-ATCTTAAGTAGAATTCATTAAGCGTCTTGGTGAATAAATCATCT-------------------------TCAA---------ATAGG-TCTGAAGTATCTAAACTATCT------AAATGTA--TATATAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GC----------------------AG-CA---GA-GG--------C-------------------G-CA-------TAAGAAAACAA-C-TA-CAAACAGTGCAAGTATGTGTCACTGGGC----TTCAG------TAGCT-GCTACTCAATACTA---------------------G--AGACATCCCGTTACATGTAGGCTTAC--A--TT------TTGTT---ATA-----ATTTACCCATTATGTTCGA---GT-AACCATT-GGCCTATTAACTATC
gi|7 : GGGGCCGTATTCATAAAGCTTCTTAG------AT----TTTT-TCTCATCTAAGATA-TTC---AGT----------------TT----T---GTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TTAAA-A-ATAA-ATCTTAAGTAGAATTCATAAAGCGTCTTAGCGAA-AAATCATCTTAGAACA---AAGTGTTTTTC-CTATCAACTTT--CAGATGGG-TCAGAGGTATCTTAACTATCT---AAGAAATTTC--T---TAAAAATGGCGC-CTTCAATT-TAGA-A-AGTGGCAT-----T--T---GCTGCAGAGAAGAATAAGAAAACAAC-TA---AT-AAT------AG-------------------GATAAG-----TATGA--ACGATT-TT-CA------GCATAAATATGTCACTGGGG----TTTAG------TAACT-GC-------TATCA---------------------AATAGACA------------------CCC--C--TT------TTaaatattacagc
gi|8 : TGGGGCCGTATTCATAAAGCTTCTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAT--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-AA-AACTAT-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TCTGAGGTGTACTAACTATTT---AAGAAATTTC--T---TAAAACGTATAA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGC-T-TT-CA------GCATACATA---CCTTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TAACCTTacacttacatgttgttgttatagacccatta
gi|9 : GACCATATTCATAAAGCTTTTAAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TGTCTTA-ACT---TTTCTTCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-AA-A-TTTATTTCTTAAGTGTTATTCAGAAAG-ATCTTAGCGAAAAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--GAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTAC--T---CAAAACCTGTGA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCATGA-C-TT-CA------GCATACATGTGTCATTAGAT----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCCATT---TATC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTATTTGTAACCTGTCTGTCTGTTTGCCTGTCCGTCCGTCCGTCCGTCCGTCTGTCTGTCTGTAAGAATGATTAGATGAATACATCAATAGACACATAAATGGATAATAATAATAATAATAAT
Unaligned ( gi|20 ): TGCCTGTCTGCCTGCCTGCCTGTCGCCCGTCCGTCCGTCTGTTTGTCAACGTGACAATTAAATGATAATTAAT
Unaligned ( gi|22 ): CAATTTTATTTTGCCTGTCTGTCTGTCTGTCTGTCCGTCCGCCCGCCC
Unaligned ( gi|23 ): TGTTTGTCTGTCTGTCAGTCCATCCGTCCATCCATCTGA
Unaligned ( gi|24 ): GTGTCTTGTATCTGTTAAACTCCTGATATACATGCACC
Alignments
lowQualScore : 111111111111 1111 11 444444444444444444444444444444444444444444444444444444444444444 1111111 1111111 222222222222222222222222 222222222222222222
lowQualScore : 1 777777 5555 2 2 444 222222222222 44 444 2 2 6 2 2 2 33 2 9999 2 55 44 3 444 1 2 2 33 2 555 33 777 66 6 22 3 3 3 77777 44 555 999999999999999999999999999999999999999999999999999999999999999 3 4444444 1 9 3 3 888888 1 6666 888888 2 8888888 555555555555555555555555 222222222222222222 44444 888888 555 88888 6 0 3 555 3 666 3 8
lowQualScore : . ...... .... . . ... ............ .. ... . . . . . . .. . .... . .. .. . ... . . . .. . ... .. ... .. . .. . . . ..... .. ... ............................................................... . ....... . . . . ...... . .... ...... . ....... ........................ .................. ..... ...... ... ..... . . . ... . ... . .
lowQualScore : 3 777777 7777 7 7 777 888888888888 88 777 7 7 2 7 7 5 44 5 3333 9 44 00 7 777 8 7 7 77 7 000 99 999 88 2 11 1 3 1 77777 22 444 666666666666666666666666666666666666666666666666666666666666666 1 2222222 8 2 1 1 888888 0 5555 222222 9 6666666 444444444444444444444444 777777777777777777 55555 888888 888 33333 7 4 3 888 3 444 2 0
consensus : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
Reference ( family-2155 ) : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
gi|1 : GGGGCCCTATTCATAAATGTTTTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TT-AA-AACTAT-TTCTTAAGTGATATTCAGAGAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TTTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTATAA-CTTG-GTT-TAAAGA-AATGATTC-----T--T---AC----------------------AC-CA---AA-TGT------AT-------------------G-TA-------TTTGAGCAAGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTATCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTAACCTTGACAGTTAAAGCGATTTG-TCTGTATGTCTCTCTGT
gi|10 : ataaattgtataccaGAGCTATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATAATTC---AATA--TAACCTCAGTTTTTCG-TCTCAATTTCATCTT-AT-TTTCACTA-TT-TTCATCTAAGA--TT-ATTA-CTTA-TTAATAAGCGTTATTCAGAAAGCATCTTAGCTAATGAAACATCTAAGAATA---AAACGCTTTTC-CTCTCAACTTC--CATATAGC-TTTGAGGTGTATTTACTTTTTGACAAAAAATTTC--T---TAAGAACT-TGA-CTTT-GTT-TAAA-A-AATAATGC-----A--T---GC----------------------AC-C----TA-TGC------AT-------------------G-TA-------TTTGTGCACGA-T-TT-TA------GCATGAATGACTCATTAGGC------TAC------TAACT-AC-------TAC----------------------------ATA------------------TAC--A--TT------TTGCT---TTG-----ATTTAC--------CTTTATTTGT-A---GTTCGACctgtctgtctgtcagtccatccgcccgtccgact
gi|11 : tCTGGGGCCATATTCATCAAACTT-TAAG------AG----TTAA-GTTCTTCTAAGATA-TTCTTAAATA--tgt
gi|11 : gc-TTCTTCTAAGA--T----------A-TTCTTAAATAGAATTTATAAAGCGTCTTAGCGAATAAATCGTTTTAGAATA---GAACATTTTCC-ATTTCAACTTT--AAGAT--------AGGTACCTTAACTATTC---AAGAAATTTG--T---TAAAAATGGTGG-TTTCAGTT-T--AGACAGTGATAA-----T--TTCAGC----------------------A--CA---GA-AGA------ATAAGAAAG------------G-TAAGGTAAGTTT--GCATGATT-TT-CA------GCATGAATGTGCCACTAGGC----TTGAT------TAACT-GCTTCTAAATACTA---------------------C--AGACA------------------TCCCTG--TTCGGCTATTATG---TTGTTATAATTCAACA-TTATGTTCGAGTTGT-C---ATT-GAGCTATT---TA--CTATATA-GTATT--ACAGgaatttataaagcgtcttagcgaataaatcgttttagaatagaacattttccatttcaactttaagataggtaccttaactattcaagaaatttgttaaaaatggtggtttcagtttagacagtgataatttcagcacagaagaataagaaaggtaaggtaagtttgcatgattttcagcatgaatgtgccactaggcttgattaactgcttctaaatactacagacatccctgttcggctattatgttgttataattcaacattatgttcgagttgtcattgagctatttactatatagtattacagcc
gi|12 : gcctggggccatattcatcaaactttaagagttaagT---TTTTATCTT-AA-ATCCA-AA-TT-TTCATCGAAGA--TT-AA-AACTAT-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAAGAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGATTTTTC--T---TAAAACCTGTAA-CTTG-GTT-TAAAGA-AATTATAC-----T--T---GC----------------------AC-CA---AA-AGT------GT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTAAT------CAACT-GC-------TACTT---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTcc
gi|13 : TCTTAAGTAGAATTCATTAAGCGTCTTAGTGAATAAATCATCT-------------------------TCAA---------ATATG-TCTGAAGTATCTCAACTATCT---AA-AAATATC--TA--TAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GCAGCAGAG---------------ACGCA---TA-AGA------ATACAACTACACGCAATGCAAG-TA-------T----GCACGA-T-TTTCA------GCATGAGTGTGTCACTGGGC----TTCAA------TAACT-GC-------TACTC---------------------A--A
gi|14 : aaGGGGCCGTATCCACAAAGCATCTTGGGAAAAAATCACCTTATATTT----TAAGATT-TTC---CTTAGTT--------TTTCTT---CT---TTT--TC-T-AA-GTT------TT-TTC-CCTTAGATTTT-AA-A-ATAA-TTCTTAAGTACTATCCATAAAACTTTTTACTTA--AAGTAGTCTA---------------TTTTT-TTCTTAAATATTGAGGA-ATCATGGGAGCTTTCTTAATT-TTT---AAGAAATTTC--T---TAAAtactacagacatccccgttacatgtaggcggacatcttgttataatttacacattatgttcgagtaaccattgaccttattacagcc
gi|15 : aAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--T--TT------TTGTA---TTG-----ATTTACCT-TTACTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTTTAC-TGACAGCTAAAGCGATTTG-TCTGTCTGTCTGTCCGTtat
gi|16 : CTGGGACCACATTCATGGAGTTTATTAA------AT----TTAT-TTT--------------------TA--T--------TGTTTCA--------TTCATTTT-AA-ATCCA-TA-TT-TT--------------AA-A-CTTA------AAG----ATTAAGAATACATCTTAGCGA-TAACTCATCTTAGAATA---GAACATGTGTC-CTCTTAATTTT--ATGATAGT-TAAGAGGTGccgtacgtcctcctcactctcttccgtctgtccgtctttgttcgttcgttcgttcgt
gi|17 : cTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCACCTT-CA-ATC-A-TT-TTGTTCATCTAGGA--TT-AACA-CTTA-TTCTTAAATATTATTCAGAAAATATCT---CAAATAAATC
gi|19 : TGGGGCCATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA-----------CTTCTTA-ACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-Aa
gi|2 : CTGGGGCCGTATTCATGAAGCTTATTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AA-------------------A-ACT---TTTCATCTT-AA-ATCAA-TA-GT-TTCATTTAAGA--TT-AATA-CTTA-TTCTTAAGTGTTATTCAGAAAGTATCTTAGCGGATAAATCGTCTGAGAATA---GGACGTTTTTTTCTCTTAACTGT--ATGATAGC-TCTGAGGTGTAATAACTATTT---ATGAAATTTC--T---CAAAACCTGTGA-CTT--GTTACAAAGA-AAGTATAC-----T--T---AT----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACCTGTGTCATCAGTA----TTTAT------CAACT-GC-------CACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTT--TTTGT-A---GTT-GACCTTTT---TGTCCTTTATGTGTACGTGACAGTTAAAGCGGTTGGTTTTATTTGTCCGTCCGTg
gi|21 : ATTTG-TCTGTCCGTCCGTCCGTcagtccgtccgtctttgtttgttcgtttgtttgt
gi|3 : tttctttaaatctgtatgtatCTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TT-AATA-CTTA-TTCTTAAGTGTTATTCAGAAAACATCTTAGCGAATAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGATGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTAA-CTTG-ATT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGGGCACGA-T-TT-CA------ACATACATGTGTCATAAGAC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACATATT---TATCCTTTATGTATACTTGACAGTTAAAGCAATTTG-TCTGTCTGTCCGTCCGTctatctgtctgtacgtcagtca
gi|4 : ATAAAGCTTTTTAG------AT----TTTT-TTTCATCTAAGACA-TTC---AACA--T--------TTTCTTA-GTG---TTTCATCTT-AA-ATTAA-TATTT-TTCATCTGAAA--TG-AA-A----A-----------------AAAAAGTA-------AAATAATTCATCTAAGAATATATTAAAG-TTTTC-CTCTTAACTGT--AAGATATG-TTTTAGGTATATTGACTGCCT---ACG--ATTTCTTT---TAAAATCTATAA-TTTT-ATT-CAAAAA-CATCATATAAAAATTAT---GT----------------------AC-AAATGAA-AGTAAAACAATTACATAAAAG---------G-TA-------TTTGTGCACAA-TATT-AA------GCAAAAATGTATCTTTGGGCTTTATTTAT------CAACT-GC-------CATTACCTATTACAGGCAGCCCTTTCA--GGATA-------------------AC--A--TT------TGTTA----TA-----ATTTACCTATTACCCTTT-TATGT-C---ATT-GACCTATT---TAT
gi|5 : ttgtaGGTCATACTCATTAAGTTCCTTAG------AC----TTCT-TTACGTCTAAAATA-TTC---CATA--T--------TTTCTTAGA-----TTTCATCTG-AA-AACAA-TA-GT-ATCATTTAAAA--TT-AATA-ATAA-ACCTTAAGCGTCAATCAGAAAGCATCTTAGCGAATAAATAGTCTAAGAATA---GAACAATTTTC-CTGTAATCTTT--AAGATAGC-TTTGAGATATATTGAC--TTC---A-------TT--T---TAAA----------TTC-AT---------------AT-----T--T---GC----------------------AC-TA---AACACT------GT-------------------G-TA-------ATTGTGCACGATT-TT-CA------GTACGAATGTGTCATTACAC----ATAATGAATTGCAACTAAC-------TACTA---------------------C--AGACG-------------------AC--AGCTT------TTTCAAGCTTA-----AATACCCG-TTATATTGTATTTGTAA---GAT--ATTTATT---GATTACTCATGTGTACTTGACa
gi|6 : acaaatgtaaatacccgtGCCATGTTAATTAAGCTTCTTAT------AT----TTAT-TTTCATCTAAGATA-TTC---AAT---T--------TGTTTTA-GTT---TTTCATCTTCAACATCAA-TA-TT-TTCATCTAAGA--TT-AATA-ATAA-ATCTTAAGTAGAATTCATTAAGCGTCTTGGTGAATAAATCATCT-------------------------TCAA---------ATAGG-TCTGAAGTATCTAAACTATCT------AAATGTA--TATATAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GC----------------------AG-CA---GA-GG--------C-------------------G-CA-------TAAGAAAACAA-C-TA-CAAACAGTGCAAGTATGTGTCACTGGGC----TTCAG------TAGCT-GCTACTCAATACTA---------------------G--AGACATCCCGTTACATGTAGGCTTAC--A--TT------TTGTT---ATA-----ATTTACCCATTATGTTCGA---GT-AACCATT-GGCCTATTAACTATC
gi|7 : GGGGCCGTATTCATAAAGCTTCTTAG------AT----TTTT-TCTCATCTAAGATA-TTC---AGT----------------TT----T---GTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TTAAA-A-ATAA-ATCTTAAGTAGAATTCATAAAGCGTCTTAGCGAA-AAATCATCTTAGAACA---AAGTGTTTTTC-CTATCAACTTT--CAGATGGG-TCAGAGGTATCTTAACTATCT---AAGAAATTTC--T---TAAAAATGGCGC-CTTCAATT-TAGA-A-AGTGGCAT-----T--T---GCTGCAGAGAAGAATAAGAAAACAAC-TA---AT-AAT------AG-------------------GATAAG-----TATGA--ACGATT-TT-CA------GCATAAATATGTCACTGGGG----TTTAG------TAACT-GC-------TATCA---------------------AATAGACA------------------CCC--C--TT------TTaaatattacagc
gi|8 : TGGGGCCGTATTCATAAAGCTTCTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAT--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-AA-AACTAT-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TCTGAGGTGTACTAACTATTT---AAGAAATTTC--T---TAAAACGTATAA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGC-T-TT-CA------GCATACATA---CCTTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TAACCTTacacttacatgttgttgttatagacccatta
gi|9 : GACCATATTCATAAAGCTTTTAAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TGTCTTA-ACT---TTTCTTCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-AA-A-TTTATTTCTTAAGTGTTATTCAGAAAG-ATCTTAGCGAAAAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--GAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTAC--T---CAAAACCTGTGA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCATGA-C-TT-CA------GCATACATGTGTCATTAGAT----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCCATT---TATC
blockSeqs : A GAAAAA CACC A A TTA ATAACCTCAG GA CAA C C C C T G TT A TAC T TT TT A TAT C T T TG A GAC TT ATA AC G CA A G C AAAAA TA TCA AGCAGAGACGCATAAGAATACAACTACACGCAATGCAA A AGGTAAG T T A T AACAGT A TTTA GAATTG A TTCTAAA CCTATTACAGGCAGCCCTTTCA TCCCGTTACATGTAGGCT CTG CGGCTA AGC TTATA A A ACC C AAC T T
blockSeqs : C . . . . . AGTT T . . . C . . . . . AAC A T GA T . T . T . . . . A AT G CA . G . . . . TGCAGAGAAGAATAAGAAAACAACTAATAATAG . AG A T . . . A . . . TACTCAA AAT . AGC . . . A . . . . G .
blockSeqs : A . . . . . AT A . . . C . . . . . CAC A T TT A . T . G . . . . . CC . T . A . . . . ACAAATGAAAGTAAAACAATTACATAAAAG . . A T . . . C . . . . C . A . . . . . . . . T .
blockSeqs : G . . . . . AT A . . . A . . . . . TAC T T GA A . T . A . . . . . CC . G . G . . . . ACAGAAGAATAAGAAAG . . G . . . . A . . . . A . A . . . . . . . . T .
blockSeqs : C . . . . . AT A . . . A . . . . . TAC T T CT T . T . T . . . . . CC . C . G . . . . ACTAAACACTGT . . T . . . . C . . . . A . T . . . . . . . . .
blockSeqs : A . . . . . AT A . . . C . . . . . TAA T T TT G . T . G . . . . . TC . G . A . . . . ACCAAAAGTGT . . T . . . . C . . . . A . A . . . . . . . .
blockSeqs : G . . . . . AT G . . . A . . . . . TAA T T TT A . A . G . . . . . AT . T . A . . . . ACCAAAAGTAT . . A . . . . A . . . . A . A . . . . . . . .
blockSeqs : C . . . . . TT G . . . A . . . . . AAC A T TT A . T . G . . . . . CG . C . G . . . . ACCAAAAGTAT . . A . . . . A . . . . A . A . . . . . . . .
blockSeqs : A . . . . . AT A . . . A . . . . . AA A A TC A . T . T . . . . . CC . C . G . . . . ACCAAAAGTAT . . A . . . . T . . . . C . A . . . . . . . .
blockSeqs : T . . . . . A A . . . C . . . . . AC A A GA T . T . T . . . . . . . G . . . . . . ACCAAAAGTAT . . A . . . . A . . . . G . C . . . . . . . .
blockSeqs : T . . . . . T . . . . A . . . . . AA A A GA A . . . G . . . . . . . G . . . . . . ACCTATGCAT . . . . . . . C . . . . A . A . . . . . . .
blockSeqs : A . . . . . . . . . . A . . . . . AT T T TT A . . . G . . . . . . . . . . . . . . AGCAGAGGC . . . . . . . C . . . . A . A .
blockSeqs : A . . . . . . . . . . . . . . . . A . . TT . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
finalCons : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTATTTGTAACCTGTCTGTCTGTTTGCCTGTCCGTCCGTCCGTCCGTCCGTCTGTCTGTCTGTAAGAATGATTAGATGAATACATCAATAGACACATAAATGGATAATAATAATAATAATAAT
Unaligned ( gi|20 ): TGCCTGTCTGCCTGCCTGCCTGTCGCCCGTCCGTCCGTCTGTTTGTCAACGTGACAATTAAATGATAATTAAT
Unaligned ( gi|22 ): CAATTTTATTTTGCCTGTCTGTCTGTCTGTCTGTCCGTCCGCCCGCCC
Unaligned ( gi|23 ): TGTTTGTCTGTCTGTCAGTCCATCCGTCCATCCATCTGA
Unaligned ( gi|24 ): GTGTCTTGTATCTGTTAAACTCCTGATATACATGCACC
Alignments
lowQualScore : 111111111111 1111 11 444444444444444444444444444444444444444444444444444444444444444 1111111 1111111 222222222222222222222222 222222222222222222
lowQualScore : 1 777777 5555 2 2 444 222222222222 44 444 2 2 6 2 2 2 33 2 9999 2 55 44 3 444 1 2 2 33 2 555 33 777 66 6 22 3 3 3 77777 44 555 999999999999999999999999999999999999999999999999999999999999999 3 4444444 1 9 3 3 888888 1 6666 888888 2 8888888 555555555555555555555555 222222222222222222 44444 888888 555 88888 6 0 3 555 3 666 3 8
lowQualScore : . ...... .... . . ... ............ .. ... . . . . . . .. . .... . .. .. . ... . . . .. . ... .. ... .. . .. . . . ..... .. ... ............................................................... . ....... . . . . ...... . .... ...... . ....... ........................ .................. ..... ...... ... ..... . . . ... . ... . .
lowQualScore : 3 777777 7777 7 7 777 888888888888 88 777 7 7 2 7 7 5 44 5 3333 9 44 00 7 777 8 7 7 77 7 000 99 999 88 2 11 1 3 1 77777 22 444 666666666666666666666666666666666666666666666666666666666666666 1 2222222 8 2 1 1 888888 0 5555 222222 9 6666666 444444444444444444444444 777777777777777777 55555 888888 888 33333 7 4 3 888 3 444 2 0
consensus : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
Reference ( family-2155 ) : CTGGGGCCGTATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCNA-TA-TT-TTCATCTAAGA--TT-AA-A-CTNA-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGTCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTGA-CTTC-GTT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATANATGTGTCATTAGGC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTGTACTTGACAGTTAAAGCGATTTG-TCTGTCTGTCCGTCCGT
gi|1 : GGGGCCCTATTCATAAATGTTTTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TT-AA-AACTAT-TTCTTAAGTGATATTCAGAGAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TTTGAGGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTATAA-CTTG-GTT-TAAAGA-AATGATTC-----T--T---AC----------------------AC-CA---AA-TGT------AT-------------------G-TA-------TTTGAGCAAGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTATCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTAACCTTGACAGTTAAAGCGATTTG-TCTGTATGTCTCTCTGT
gi|10 : ataaattgtataccaGAGCTATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATAATTC---AATA--TAACCTCAGTTTTTCG-TCTCAATTTCATCTT-AT-TTTCACTA-TT-TTCATCTAAGA--TT-ATTA-CTTA-TTAATAAGCGTTATTCAGAAAGCATCTTAGCTAATGAAACATCTAAGAATA---AAACGCTTTTC-CTCTCAACTTC--CATATAGC-TTTGAGGTGTATTTACTTTTTGACAAAAAATTTC--T---TAAGAACT-TGA-CTTT-GTT-TAAA-A-AATAATGC-----A--T---GC----------------------AC-C----TA-TGC------AT-------------------G-TA-------TTTGTGCACGA-T-TT-TA------GCATGAATGACTCATTAGGC------TAC------TAACT-AC-------TAC----------------------------ATA------------------TAC--A--TT------TTGCT---TTG-----ATTTAC--------CTTTATTTGT-A---GTTCGACctgtctgtctgtcagtccatccgcccgtccgact
gi|11 : tCTGGGGCCATATTCATCAAACTT-TAAG------AG----TTAA-GTTCTTCTAAGATA-TTCTTAAATA--tgt
gi|11 : gc-TTCTTCTAAGA--T----------A-TTCTTAAATAGAATTTATAAAGCGTCTTAGCGAATAAATCGTTTTAGAATA---GAACATTTTCC-ATTTCAACTTT--AAGAT--------AGGTACCTTAACTATTC---AAGAAATTTG--T---TAAAAATGGTGG-TTTCAGTT-T--AGACAGTGATAA-----T--TTCAGC----------------------A--CA---GA-AGA------ATAAGAAAG------------G-TAAGGTAAGTTT--GCATGATT-TT-CA------GCATGAATGTGCCACTAGGC----TTGAT------TAACT-GCTTCTAAATACTA---------------------C--AGACA------------------TCCCTG--TTCGGCTATTATG---TTGTTATAATTCAACA-TTATGTTCGAGTTGT-C---ATT-GAGCTATT---TA--CTATATA-GTATT--ACAGgaatttataaagcgtcttagcgaataaatcgttttagaatagaacattttccatttcaactttaagataggtaccttaactattcaagaaatttgttaaaaatggtggtttcagtttagacagtgataatttcagcacagaagaataagaaaggtaaggtaagtttgcatgattttcagcatgaatgtgccactaggcttgattaactgcttctaaatactacagacatccctgttcggctattatgttgttataattcaacattatgttcgagttgtcattgagctatttactatatagtattacagcc
gi|12 : gcctggggccatattcatcaaactttaagagttaagT---TTTTATCTT-AA-ATCCA-AA-TT-TTCATCGAAGA--TT-AA-AACTAT-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAAGAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGAGGTGTATTAACTATTT---AAGATTTTTC--T---TAAAACCTGTAA-CTTG-GTT-TAAAGA-AATTATAC-----T--T---GC----------------------AC-CA---AA-AGT------GT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACATGTGTCATTAGAC----TTAAT------CAACT-GC-------TACTT---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TATCCTcc
gi|13 : TCTTAAGTAGAATTCATTAAGCGTCTTAGTGAATAAATCATCT-------------------------TCAA---------ATATG-TCTGAAGTATCTCAACTATCT---AA-AAATATC--TA--TAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GCAGCAGAG---------------ACGCA---TA-AGA------ATACAACTACACGCAATGCAAG-TA-------T----GCACGA-T-TTTCA------GCATGAGTGTGTCACTGGGC----TTCAA------TAACT-GC-------TACTC---------------------A--A
gi|14 : aaGGGGCCGTATCCACAAAGCATCTTGGGAAAAAATCACCTTATATTT----TAAGATT-TTC---CTTAGTT--------TTTCTT---CT---TTT--TC-T-AA-GTT------TT-TTC-CCTTAGATTTT-AA-A-ATAA-TTCTTAAGTACTATCCATAAAACTTTTTACTTA--AAGTAGTCTA---------------TTTTT-TTCTTAAATATTGAGGA-ATCATGGGAGCTTTCTTAATT-TTT---AAGAAATTTC--T---TAAAtactacagacatccccgttacatgtaggcggacatcttgttataatttacacattatgttcgagtaaccattgaccttattacagcc
gi|15 : aAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--T--TT------TTGTA---TTG-----ATTTACCT-TTACTCTTTATTTGT-A---GTT-GACCTATT---TATCCTTTATGTTTAC-TGACAGCTAAAGCGATTTG-TCTGTCTGTCTGTCCGTtat
gi|16 : CTGGGACCACATTCATGGAGTTTATTAA------AT----TTAT-TTT--------------------TA--T--------TGTTTCA--------TTCATTTT-AA-ATCCA-TA-TT-TT--------------AA-A-CTTA------AAG----ATTAAGAATACATCTTAGCGA-TAACTCATCTTAGAATA---GAACATGTGTC-CTCTTAATTTT--ATGATAGT-TAAGAGGTGccgtacgtcctcctcactctcttccgtctgtccgtctttgttcgttcgttcgttcgt
gi|17 : cTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCACCTT-CA-ATC-A-TT-TTGTTCATCTAGGA--TT-AACA-CTTA-TTCTTAAATATTATTCAGAAAATATCT---CAAATAAATC
gi|19 : TGGGGCCATATTCATAAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA-----------CTTCTTA-ACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-Aa
gi|2 : CTGGGGCCGTATTCATGAAGCTTATTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AA-------------------A-ACT---TTTCATCTT-AA-ATCAA-TA-GT-TTCATTTAAGA--TT-AATA-CTTA-TTCTTAAGTGTTATTCAGAAAGTATCTTAGCGGATAAATCGTCTGAGAATA---GGACGTTTTTTTCTCTTAACTGT--ATGATAGC-TCTGAGGTGTAATAACTATTT---ATGAAATTTC--T---CAAAACCTGTGA-CTT--GTTACAAAGA-AAGTATAC-----T--T---AT----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGA-T-TT-CA------GCATACCTGTGTCATCAGTA----TTTAT------CAACT-GC-------CACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTT--TTTGT-A---GTT-GACCTTTT---TGTCCTTTATGTGTACGTGACAGTTAAAGCGGTTGGTTTTATTTGTCCGTCCGTg
gi|21 : ATTTG-TCTGTCCGTCCGTCCGTcagtccgtccgtctttgtttgttcgtttgtttgt
gi|3 : tttctttaaatctgtatgtatCTGGGGCCGTATTCATCAAGCTTCTTAG------AT----TTAT-TTTCATCTAAGATA-TTC---AATA--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TT-AATA-CTTA-TTCTTAAGTGTTATTCAGAAAACATCTTAGCGAATAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAGC-TCTGATGTGTATTAACTATTT---AAGAAATTTC--T---TAAAACCTGTAA-CTTG-ATT-TAAAGA-AATGATAC-----T--T---GC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGGGCACGA-T-TT-CA------ACATACATGTGTCATAAGAC----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACATATT---TATCCTTTATGTATACTTGACAGTTAAAGCAATTTG-TCTGTCTGTCCGTCCGTctatctgtctgtacgtcagtca
gi|4 : ATAAAGCTTTTTAG------AT----TTTT-TTTCATCTAAGACA-TTC---AACA--T--------TTTCTTA-GTG---TTTCATCTT-AA-ATTAA-TATTT-TTCATCTGAAA--TG-AA-A----A-----------------AAAAAGTA-------AAATAATTCATCTAAGAATATATTAAAG-TTTTC-CTCTTAACTGT--AAGATATG-TTTTAGGTATATTGACTGCCT---ACG--ATTTCTTT---TAAAATCTATAA-TTTT-ATT-CAAAAA-CATCATATAAAAATTAT---GT----------------------AC-AAATGAA-AGTAAAACAATTACATAAAAG---------G-TA-------TTTGTGCACAA-TATT-AA------GCAAAAATGTATCTTTGGGCTTTATTTAT------CAACT-GC-------CATTACCTATTACAGGCAGCCCTTTCA--GGATA-------------------AC--A--TT------TGTTA----TA-----ATTTACCTATTACCCTTT-TATGT-C---ATT-GACCTATT---TAT
gi|5 : ttgtaGGTCATACTCATTAAGTTCCTTAG------AC----TTCT-TTACGTCTAAAATA-TTC---CATA--T--------TTTCTTAGA-----TTTCATCTG-AA-AACAA-TA-GT-ATCATTTAAAA--TT-AATA-ATAA-ACCTTAAGCGTCAATCAGAAAGCATCTTAGCGAATAAATAGTCTAAGAATA---GAACAATTTTC-CTGTAATCTTT--AAGATAGC-TTTGAGATATATTGAC--TTC---A-------TT--T---TAAA----------TTC-AT---------------AT-----T--T---GC----------------------AC-TA---AACACT------GT-------------------G-TA-------ATTGTGCACGATT-TT-CA------GTACGAATGTGTCATTACAC----ATAATGAATTGCAACTAAC-------TACTA---------------------C--AGACG-------------------AC--AGCTT------TTTCAAGCTTA-----AATACCCG-TTATATTGTATTTGTAA---GAT--ATTTATT---GATTACTCATGTGTACTTGACa
gi|6 : acaaatgtaaatacccgtGCCATGTTAATTAAGCTTCTTAT------AT----TTAT-TTTCATCTAAGATA-TTC---AAT---T--------TGTTTTA-GTT---TTTCATCTTCAACATCAA-TA-TT-TTCATCTAAGA--TT-AATA-ATAA-ATCTTAAGTAGAATTCATTAAGCGTCTTGGTGAATAAATCATCT-------------------------TCAA---------ATAGG-TCTGAAGTATCTAAACTATCT------AAATGTA--TATATAAAA--TGGGAGCTTC-AGT-TAAGAC-AGTGATAT-----T--T---GC----------------------AG-CA---GA-GG--------C-------------------G-CA-------TAAGAAAACAA-C-TA-CAAACAGTGCAAGTATGTGTCACTGGGC----TTCAG------TAGCT-GCTACTCAATACTA---------------------G--AGACATCCCGTTACATGTAGGCTTAC--A--TT------TTGTT---ATA-----ATTTACCCATTATGTTCGA---GT-AACCATT-GGCCTATTAACTATC
gi|7 : GGGGCCGTATTCATAAAGCTTCTTAG------AT----TTTT-TCTCATCTAAGATA-TTC---AGT----------------TT----T---GTTCATCTT-AA-ATCCA-TA-TT-TTCATCTAAGA--TTAAA-A-ATAA-ATCTTAAGTAGAATTCATAAAGCGTCTTAGCGAA-AAATCATCTTAGAACA---AAGTGTTTTTC-CTATCAACTTT--CAGATGGG-TCAGAGGTATCTTAACTATCT---AAGAAATTTC--T---TAAAAATGGCGC-CTTCAATT-TAGA-A-AGTGGCAT-----T--T---GCTGCAGAGAAGAATAAGAAAACAAC-TA---AT-AAT------AG-------------------GATAAG-----TATGA--ACGATT-TT-CA------GCATAAATATGTCACTGGGG----TTTAG------TAACT-GC-------TATCA---------------------AATAGACA------------------CCC--C--TT------TTaaatattacagc
gi|8 : TGGGGCCGTATTCATAAAGCTTCTAAG------AT----TTAT-TTTCATCTAAGATA-TTC---AAAT--T--------TTTCTTA-ACT---TTTCATCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-AA-AACTAT-TTCTTAAGTGTTATTCAGAAAGCATCTTAGCGAATAAATCGACTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--AAGATAAC-TCTGAGGTGTACTAACTATTT---AAGAAATTTC--T---TAAAACGTATAA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCACGC-T-TT-CA------GCATACATA---CCTTAGAC----TTTAT------CAACT-GC-------TATTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCTATT---TAACCTTacacttacatgttgttgttatagacccatta
gi|9 : GACCATATTCATAAAGCTTTTAAG------AT----TTAT-TTTTATCTAAGATA-TTC---AATA--T--------TGTCTTA-ACT---TTTCTTCTT-AA-ATCAA-TA-TT-TTCATCTAAGA--TT-AA-A-TTTATTTCTTAAGTGTTATTCAGAAAG-ATCTTAGCGAAAAAATCATCTAAGAATA---GAACGTTTTTC-CTCTCAACTGT--GAGATAGC-TCTGAGGTGTATTAACTATTT---AAGAAATTAC--T---CAAAACCTGTGA-CTTG-GTT-TAAAGA-AATGATAC-----T--T---AC----------------------AC-CA---AA-AGT------AT-------------------G-TA-------TTTGAGCATGA-C-TT-CA------GCATACATGTGTCATTAGAT----TTTAT------CAACT-GC-------TACTA---------------------A--AGATA------------------TAC--A--TT------TTGTA---TTG-----ATTTACCT-TTATTCTTTATTTGT-A---GTT-GACCCATT---TATC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTTTATTTGTAACCTGTCTGTCTGTTTGCCTGTCCGTCCGTCCGTCCGTCCGTCTGTCTGTCTGTAAGAATGATTAGATGAATACATCAATAGACACATAAATGGATAATAATAATAATAATAAT
Unaligned ( gi|20 ): TGCCTGTCTGCCTGCCTGCCTGTCGCCCGTCCGTCCGTCTGTTTGTCAACGTGACAATTAAATGATAATTAAT
Unaligned ( gi|22 ): CAATTTTATTTTGCCTGTCTGTCTGTCTGTCTGTCCGTCCGCCCGCCC
Unaligned ( gi|23 ): TGTTTGTCTGTCTGTCAGTCCATCCGTCCATCCATCTGA
Unaligned ( gi|24 ): GTGTCTTGTATCTGTTAAACTCCTGATATACATGCACC