lowQualScore : 1 1 2222 22222222 1 111 1 111111 111 222222222222 1111111 3333333333333333 111 1 111111 1111111111 22222222 1111 1 1 555555555555555555555 1111 1 11111 222 11111111 1 2222 111111111 1 1111 111 11
lowQualScore : 0 3 6 6 5 2 6 1111 2 66 6 1 99 66666666 9 44 111 3 999999 6 99 6 111 999999999999 8888888 7777777777777777 5 111 99 0 6 1 111111 1 5555555555 99 3 6 6 22222222 4444 1 0 6 666666666666666666666 7777 1 2 6 9 44444 0 6 999 2 0 55555555 44 1 2 1111 777 3 55 55 666666666 55 666 1 3 3 666 44 4 777777 2 33 444 0 5 0 2 1 2 0000 444 11
lowQualScore : . . . . . . . .... . .. . . .. ........ . .. ... . ...... . .. . ... ............ ....... ................ . ... .. . . . ...... . .......... .. . . . ........ .... . . . ..................... .... . . . . ..... . . ... . . ........ .. . . .... ... . .. .. ......... .. ... . . . ... .. . ...... . .. ... . . . . . . .... ... ..
lowQualScore : 2 8 0 7 0 2 7 2222 5 99 7 4 22 00000000 2 33 777 5 222222 7 22 7 777 333333333333 0000000 9999999999999999 7 777 22 8 7 0 888888 0 3333333333 22 2 7 7 00000000 2222 0 8 7 777777777777777777777 0000 4 5 0 2 66666 1 0 444 0 5 44444444 77 2 5 0000 000 7 55 55 000000000 00 444 0 6 6 444 66 0 777777 5 22 444 8 6 1 5 5 5 3333 000 55
consensus : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTG----GAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGCTATAACAC--TGGCAC--TAT---ATCAAACAATTGAT---AGATTGATTCAATC------T-CAA--ATG-ATTTTGTT---TTTGTATCCTAAAATC------------AAT------TGAAATAACAAAA----------------A-TG---TG--GTTGTGATGTTTAT-AGTTACAG---T--TGATGCTG-CAT-TA---TTTAG-CACCAATGCAGA-ATA-GA-TC----TAT----CATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAA----TGGTGAGTGATTCATNAATACTAATTGAGATGAACCA--T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTTGAAAAA----T---CATTTATTTGATTTGGCTGCGCCA--TTTTG--ATTTCAC---------ATTT--TC---TGTTCC-T-T---T--ACGT------TCGATT-GA--TGACTGTTCTGGAACATGTTCTGAACA-TGTTCCGG-A----CA---ATN-AATCGAACG
Reference ( gi|2 ) : AGGCGCGTTCGATTCACGGTTCTGGACAATCCGGA-CAAATAGAACAACAATCGAAAACATTG----GAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGCTATAACAC--TGGCAC--TCT---ATCAAACACTTGGT---AGATTGATTGAATC------T-CAA--ATG-ATTTTGTT---TTTGTATCCTAAAATC------------AAT------TGAAATAACAAAA----------------A-TG---TG--GTTGGGATGTTTAT-AGTTACAG---T--TGATGCTG-CAT-TA---TTTAG-CACCAATGCAGA-ATA-GC-TC----TAT----CATATGTGTTGTCTTTTTCTTTTCTATGAGCAA---------------------GTTTTAAACAA----TGGAGAGTGATTCATCAACACTAATTGAGATGAATCA--T--TGGACATTGAAAGTGCCGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTTGCAAAA----T---CATTTATTTGATTTGGCTGCGCCA--TTTTG--ATTTCAC---------ATTT--TC---TTTTCC-T-T---T--ACAT------TCGATT-GA--TGACTGTTCTGGAACATCTTCTGAACA-TGTTCTAG-A----CA---ATG-AATCGAACG
gi|3 : GGTGCGTTCGATTCGCAGTTCTGGACAATCCGAA-CAACTAGAACAAC-----------TTG----GAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTT-GAAAAGGTGGTGAGATCGGAACAGTGACGTCA-AAACACGGCTGCTATAACAC--TGACAC--TAT---ATTAATCAATTTAT---AGATTGATTCAATC------T-CAA--ATG-ATTTTGTT---TTTGTATCCTAAAATC------------AAT------TGAAATAACAAAA----------------A-TG---TG--GTTGTGATGTTTAT-AGTTACTG---T--TGATGCTG-TAT-TA---TTTAG-CACCAATGCAGA-ATA-AA-TC----TAT----CATATGTGTTGTATTTTTCTTTTT--TGAGCAA---------------------GTTTTAAACAA----TGGTGAGTGATTCATCAATACTAATTGAGATGAACCA--T--TGGACATTGGAAGTG-CGCATGTCCAATGCTCACAAATATTAAGTT---A---TACAA-CAATTGTTTTGAAAAA----T---CATTTATTTGATTTGGCTGCGCCA--TTTTG--ATTTCAC---------ATTT--TC---TGTTCC-T-T---T--ATGT------TCGATT-GA--TGACTGTTCTGGAACATCTTCTGAACA-TGTTCTGG-G----CA---ATG-AATCGGACG
gi|4 : gGGAGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTG----GAATAGTGTCCAGAAC--ATGTTCCAGCTATGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGCTATAACAC--TGGCAC--TAT---ATCAACCAATTGAT---AGATTGATTCAATC------T-CAA--ATG-ATTTTGTT---TTTGTTTCCTAAAATT------------AAA------TGAAATAACAAAA----------------A-TG---TG--GTTGTGGTGTTTAT-AGTTACAG---T--TGATG----------------------------AGA-ATA-GA-TA----TAT----CATATGTGTTGT-TTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAA----TGGTGAGTGATTCATAAATACTAATTGAAATGAACCA--T--TGGGCATTGGAAGTG-CGCATGTCCAGTGCTTACAAATATTAAGTT---A---TACAA-CAATTTTTTTGAAAAA----T---CTTTTATTTGATTTGACTGCGC-----------------C---------ATTT--TC---TGTTAC-T-T---T--ACGT------TCGACT-GA--TGACTGGTCTGGAACATCTTCTGAACA-TGTTCTGG-A----CA---ATG-AA
gi|16 : gGGCGCGTTCGATTCACGGTTCTGGAAAATCCGAA-CAACTAGAACAACAATCGAATACATTG----GAACAGTGTCCGGAAC--ATGTTGCAGCTGTGCCGCTG-cgcg
gi|1 : CGCATTCGATTC-------TGGACATTCCGAA-CAACTAGAACAACAATTGAATATATTG----GAAAAGTGTTCGGAAT--ATGTTTCATCTGTGCCACTG-AAAACGGTGGTGTGCTCGGAACAGTTGCGTCGCAAACATGGCGGCAATAAAACAATGACAC--AAG---ATCAAACAATTGAT---AAATTGACAAAATT------T-CAA--AAA-ACTTTGTT---CTTGAATCACAAAATCGAGTGAAATAAAAATAAAAAGTGAAATAATAATACACCGCTTTGTTACTTA-TG---TT--ATAATAATGTT-AT-AAT-ACAGGGGT--TGA--CTGACAT-CACAGTTCAGGCACCA-TGCAGA-ATACGA-GCAGAATAT----CAGATATGGTGCCTTTC-CTTTTCTTTAAGCAATGACTTAATGTTGATGTCTCTGTTTTAAGCAAGTTTTTAACAATGATCCATAAATACTTATTGAGATGAA-CAAGTA-TGGACATTGGAAAT-TCGTAATTACAATGATTACAAATAATAAGTTCCAA---TACAA-TATTTATTTAGAAAAAAAA-T---CATGTATTTGATTAGGCTGTGCCA--TTTTG--ATTCCAC---------GTTA--TC---TGTTCC-T-T---A--ACGT------TCGATT-GA--TTAATATTCTGGAACAAGTTCTGAACA-TGTTCTCG-A----CA---GTC-AATAGAA
gi|15 : CGTTCGATTCACGGTTCTGGGCAATCCGAA-CAACTAGAACAACAATTGAATACATTG----GA--AGTGTCCGGAAC--ATGTCCCAGCTGTGCCGCTGAAAAAAGGTGG-GTG
gi|6 : CAGTTCTGTACATTCCAAAACAACTAGAA---CAATTGAATGCATTG----CAGCAGTGTTTAGAACATATATTCCATTTGTGCGGCTG-TAAcgttc
gi|3 : CATTGCCCAGAACA-TGTTCAGAAG--ATGTTCCAGctagatcaaacgattgataaaatgtgacacaatcaatctcaagtgaaataaaaaaaaagaagtgatgtttgattacttatattacaatattagtattaacatgtttttaaatgtggttatggtgtttatagatcagatttgttttcttatctttaagcaaatttaaactattgtaagtgatccgcaaatattaattgagatgaatagttatagacaaaggaagttgtacaatatatatttttatttcacttatttaattactgctccaatttgatttcacaatttctgatccatattccgttaaattgatgaatgttctgga
gi|4 : gggtgcgttcgattcgcagttctggacaatccgaacaactagaacaacttggaacagtgtccggaacatgttccagctgtgccgcttgaaaaggtggtgagatcggaacagtgacgtcaaaacacggctgctataacactgacactatattaatcaatttatagattgattcaatctcaaatgattttgtttttgtatcctaaaatcaattgaaataacaaaaatgtggttgtgatgtttatagttactgttgatgctgtattatttagcaccaatgcagaataaatctatcatatgtgttgtatttttcttttttgagcaagttttaaacaatggtgagtgattcatcaatactaattgagatgaaccattggacattggaagtgcgcatgtccaatgctcacaaatattaagttatacaacaattgttttgaaaaatcatttatttgatttggctgcgccattttgatttcacattttctgttcctttatgttcgattgatgactgttCATTGTCCAGAACA-TGTTCAGAAG--ATGTTCCAGaatcggacg
gi|5 : gggagcgttcgattcacggttctggacaatccgaacaactagaacaacaatcgaatacattggaatagtgtccagaacatgttccagctatgccgctgaaaaaggtggtgtggtcggaacagtgacgtcacaaacacggctgctataacactggcactatatcaaccaattgatagattgattcaatctcaaatgattttgtttttgtttcctaaaattaaatgaaataacaaaaatgtggttgtggtgtttatagttacagttgatgagaatagatatatcatatgtgttgttttttcttttctttgagcaagttttaaacaatggtgagtgattcataaatactaattgaaatgaaccattgggcattggaagtgcgcatgtccagtgcttacaaatattaagttatacaacaatttttttgaaaaatcttttatttgatttgactgcgccattttctgttactttacgttcgactgatgactggtAAAAGGTGGTGTGATCGGAACAGTGACGTCACAAAGACAGCTGCTATAACAC--TGGCAC--TAT---ATCAAACAATTTAT---AGATCGATTCAATA------T-CAA--ATG-ATTTTCGT---TTTGTATCCTAAAATC------------AAT------TGAAATAACACAA----------------A-TG---TG--GTTGTGATGTTTAT-AGTTACAG---T--TGATGCTG-CAT-TA---TTTAG-CACCAATGTAGA-ATA-GA-TC----TAT----CATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAA----TGGCGAGTGATTCATCAATACTTATTGAGATGGACCA--C--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTA---A---CACAA-CAATTATTTTGAAAAA----T---CATTTATATGATTTGGCTGCGCCA--TATCG--ATTTCAC---------ATTT--TC---TGTTCA-T-T---T--ACGT------TCGATT-GA--TGGCTGTT-TGGAACTTATTCTGAATA-TGTTCTGG-A----CA---ATA-AATCGAACGaacgcg
gi|7 : GTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGCTATAACAC--TGGCAC--TAT---ATCAAACA---AGTTAAAGATTGATTCAATT------T-CAA--ATT-ATTTTATTATTTTTTTATCCTAAAATC------------AAT------TCAAATAACAAAA----------------AATG---TG--GTTGTGATGTTTATTAGTTACAG---T--TGATGCTG-CAT-TA---TTTAG-CACCAATGCAGA-ATA-GC-TC----TAT----CTTATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------ATTTTAAACt
gi|10 : ccAAACATGTCTGCCATAGGAC--TGGCACAGGCTGAGATCAAACAATTGAC---AAATTGATATAATCAAAGATTACAGTCATGTACTTTGTT---TTTGTATCCCAAAATC------------AAG------TGAAATA--AAAA----------------A-Ttgttctggaacatcttctgaacatgttctggacaattaatcgaacgcgcc
gi|6 : TC------------AAG------TGAAATAAAAAAA----------------A-AGAAGTGATGTTTGATTACTTAT-A-TTACAA---TATTAGTATTAACATGTT---TTTA------AATGTGGTTATG-GTGTT----TATAGATCAGAT---TTGT---TTTCTTATCTTTAAGCAA---------------------ATTT-AAACTA----TTGTAAGTGATCCGCAAATATTAATTGAGATGAATAG--TTATAGACAAAGGAAGT------TGTACAAT--------ATAT--ATTT----------------TTATT------------T---CACTTATTTAATT--ACTGCTCCA--ATTTG--ATTTCAC---------AATT--TC---TGATCCATAT---T--CCGT------TAAATT-GA--TGAATGTTCTGGActataaagttataatatctgtttataaataatacaccccttcattataatgatatgattaatacaggtgatgtattgacat
gi|9 : cagttctgtacattccaaaacaactagaacaattgaatgcattgcagcagtgtttagaacatatattccatttgtgcggctgtaactagatcaaacgattgataaaatgtgacacaatcaatcTGATTCATCAATACTAATTGAGATAAACTA--T--TTGACATTGGAAGTGC-GCATGTCAAATGCTTACAAATATTAAGTT---A---TACAA-GAATTATTTTGAAAAA----T---CATTTATTTGATATGGCTGCGCTA--TTTTC--ATTTCAC---------ATTT--GC---TATTCC-T-T---T--ACGT------TCGATT-GA--TGACTGTTCTGGAACATCTTCTGAACA-TATTCTGG-A----AA---ATC-AATTCAAC
gi|8 : A--T--CGG-CATTGGAAGTGC-GCATTTCCAATGCTTACAAATAATAAGTT---ACAATACAA-TATTTATTTTGAAAAAAAAAT---CATTTATTTGTTTAAACTGCGCTA--TTTTG--ATTTCAC---------AATA--TC---TATCCC-T-T---T--ACGT------TCAATT-GA--TAAATGT
gi|13 : aaagacttcatgtttatagtgtccaatattaaatacagtggttaaatccatttataatcacataaaatcaaaaacaagtCCAATGCT--CAAA----GAGCT---A----------AAAGATTTGAAAAAA----T---CATTTATTTGATTTGGCTGTGCCA--TTTTA--ATTGCAC---------ATTT--TC---TGTTCC-T-T---T--ATGT------TCGATT-GA--CGACTGTTCT-GAACATCTTCTGAACA-TGTTTTGG-C----CA---ATT-AAACGAATGgaatcgcatgcatccaacgctttctaaaaggtcaata
gi|14 : TAAGTT---C---TACAA-CAATTATTTT-CAAAAAA--T---CATTTATTTGATTTGGCTGCTCCA--TTTCG--ATTTCAC---------ATTT--TT---CGTTCC-T-T---T--ACGT------TCGATT-GA--TGACTGCTCCGGAAAATCTTCTTAGCA-TGTTCTGG-A----CA---ATG-AAcg
gi|11 : ACAAGCATTTATATTGAAAAA----TAATCATTTATTTTATTAGGTTGTGCCATTTTCTGTTCTTTGACGCGCGATTGATTTGATCAAGTTCTTA-T-A---TGAATATAAGTCCTTGATTTAA--TGAATGTTATGGAACAAGTTCTGAACA-TGTTCTGG-A----CA---GTA-AACCGAATG
gi|7 : agatgaTTT--TC---TTTTCT-T-TGAGC--AAAT------T---TT-AA----ACTGTTCTGGAACATCTTCTGAACA-TGTTCTGG-A----CA---ATT-AATCGAACG
gi|5 : ccgtggtgtggtcggaacagtgacgtcacaaacacggctgctataacactggcactatatcaaacaagttaaagattgattcaatttcaaattattttattatttttttatcctaaaatcaattcaaataacaaaaaatgtggttgtgatgtttattagttacagttgatgctgcattatttagcaccaatgcagaatagctctatcttatgtgttgtct--ACGT------TCGATT-TA--T---TGTCC-AGAACATATTCAGAATA-AGTTCCAA-A----CAGCCATC-AATCGAACGcgcc
gi|3 : aaaaggtggtgtgatcggaacagtgacgtcacaaagacagctgctataacactggcactatatcaaacaatttatagatcgattcaatatcaaatgattttcgttttgtatcctaaaatcaattgaaataacacaaatgtggttgtgatgtttatagttacagttgatgctgcattatttagcaccaatgtagaatagatctatcatatgtgttgtctttttcttttctttgagcaagttttaaacaatggcgagtgattcatcaatacttattgagatggaccactggacattggaagtgcgcatgtccaatgcttacaaatattaagtaacacaacaattattttgaaaaatcatttatatgatttggctgcgccatatcgatttcacattttctgttcatttaCGT------CCGATT-CA--T---TGCCC-AGAACATGTTCAGAAGA-TGTTCCAG-AA---CAGTCATC-AATCGAAC
gi|7 : gggtgcgttcgattcgcagttctggacaatccgaacaactagaacaacttggaacagtgtccggaacatgttccagctgtgccgcttgaaaaggtggtgagatcggaacagtgacgtcaaaacacggctgctataacactgacactatattaatcaatttatagattgattcaatctcaaatgattttgtttttgtatcctaaaatcaattgaaataacaaaaatgtggttgtgatgtttatagttactgttgatgctgtattatttagcaccaatgcagaataaatctatcatatgtgttgtatttttcttttttgagcaagttttaaacaatggtgagtgattcatcaatactaattgagatgaaccattggacattggaagtgcgcatgtccaatgctcacaaatattaagttatacaacaattgttttgaaaaatcatttatttgatttggctgcgccattttgatttcacattttctgttcctttatCGT------TCGATT-AA--T---TG-TCCAGAACATGTTCAGAAGA-TGTTCCAG-A----
gi|16 : ccgtggtgtggtcggaacagtgacgtcacaaacacggctgctataacactggcactatatcaaacaagttaaagattgattcaatttcaaattattttattatttttttatcctaaaatcaattcaaataacaaaaaatgtggttgtgatgtttattagttacagttgatgctgcattatttagcaccaatgcagaatagctctatcttatgtgttgtctttttcttttctttgagcaaattttaaactgtCGT------TCGATT-CA--CG---GTTCTGGAAAA---TCCGAACA----ACTAGAA----CA---AC--AATCGAAcgcc
gi|9 : ggcgTT-GAATTGATT-TTCCAGAATATGTTCAGAAGA-TGTTCCAG-AA---CAGTCATC-AATCGAACGtacattggaacagtgtccggaacatgttgcagctgtgccgctg
gi|1 : tgattcatcaatactaattgagataaactatttgacattggaagtgcgcatgtcaaatgcttacaaatattaagttatacaagaattattttgaaaaatcatttatttgatatggctgcgctattttcatttcacatttgctattccttta--TGACTGT-CGAGAACATGTTCAGAACT-TGTTCCAG-AATATTA---ATC-AATCGAACGc
gi|4 : cgcattcgattctggacattccgaacaactagaacaacaattgaatatattggaaaagtgttcggaatatgtttcatctgtgccactgaaaacggtggtgtgctcggaacagttgcgtcgcaaacatggcggcaataaaacaatgacacaagatcaaacaattgataaattgacaaaatttcaaaaaactttgttcttgaatcacaaaatcgagtgaaataaaaataaaaagtgaaataataatacaccgctttgttacttatgttataataatgttataatacaggggttgactgacatcacagttcaggcaccatgcagaatacgagcagaatatcagatatggtgcctttccttttctttaagcaatgacttaatgttgatgtctctgttttaagcaagtttttaacaatgatccataaatacttattgagatgaacaagtatggacattggaaattcgtaattacaatgattacaaataataagttccaatacaatatttatttagaaaaaaaatcatgtatttgattaggctgtgccattttgattccacgttatctgttccttaaCTGGAACATGTTCTGGACACTATTC---------CA---ATGTATTCGAatagaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAAATCACTTCAAATCATACATGATGAATAAAAAATGTGTGTTG
Unaligned ( gi|17 ): CCCCTTGAGGTTTTCATACGGAAGCAAGGGAAAGAAGACTCTGGGCGCTATGGACAATATCAAAAAATGTAACGATTTATTTTTTA
Alignments
lowQualScore : 1111 11111111 33333333333333333 1111 11111 22222222 1 111111 111111111111 444444444444444444444 111111 1111111 11 1111111 111111111 1111111111
lowQualScore : 1 5 0 0 77 5 77 0000 5 5 5 0 66666666 66 5 0 888 3 77 66 888 888 66 55555555555555555 7777 5 5 5 22222 00000000 77 1 000000 66 1 5 5 555555555555 7 888888888888888888888 66 666666 1 6666666 0 5 11 5 0 2222222 3 0 3 666 7777 666 2 66666 444444444 44 3 3 3 4444444444 555 3 9 6 1
lowQualScore : . . . . .. . .. .... . . . . ........ .. . . ... . .. .. ... ... .. ................. .... . . . ..... ........ .. . ...... .. . . . ............ . ..................... .. ...... . ....... . . .. . . ....... . . . ... .... ... . ..... ......... .. . . . .......... ... . . . .
lowQualScore : 7 7 4 1 99 7 99 6666 0 0 0 8 55555555 99 0 9 888 2 55 99 888 888 99 00000000000000000 5555 0 0 0 55555 77777777 99 4 444444 44 4 7 7 999999999999 9 666666666666666666666 99 444444 0 2222222 2 0 99 0 8 3333333 6 3 6 444 7777 444 5 00000 555555555 66 3 3 3 6666666666 888 3 1 0 0
consensus : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAA--CAATGGT------GAGTGATTCATCAATACT-------AATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
Reference ( family-2105 ) : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAA--CAATGGT------GAGTGATTCATNAATACT-------AATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATGTTCTGAACATGTTCCGGACAATNAATCGAACG
gi|1 : CGCATTCGATTC-------TGGACATTCCGAA-CAACTAGAACAACAATTGAATATATTGGAAAAGTGTTCGGAAT--ATGTTTCATCTGTGCCACTG-AAAACGGTGGTGTGCTCGGAACAGTTGCGTCGCAAACATGGCGGCAATAAAACAATGACAC----A-AGATCAAACAATTGATAAA-T-TGACAAAATT------T-CAA--AAA-ACT---TTGTTCTTGAATCACAAAATCGAGTGAAATAAA-AATAAA---AAG---TG--AAATAATAATACACCGCTTTGTTACT--T-ATGTTA-TAATAATGTTATAATACAGGGGT--TGA--CTGACAT-CACAGTTCAGGCACC-ATGCAGA-ATACG-----AGCAGAATATCAGATATGGTG-CCTTTCCTTTTCTTTAAGCAATGACTTAATGTTGATGTCTCTGTTTTAAG--CAA--GTTTTTAACAATGATCCATAAATACT-------TATTGAGATGAACAAGTA-TGGACATTGGAAATT-CGTAATTACAATGATTACAAATAATAAGTTCCAA---TACAA-TATTTATTTA-GAAAAAAA----AT---CATGTATTTGATTAGGCTGTGCCATTTT--G--ATTCCAC---------GTTA--TCT-GTTCC-T-TAACG----------TTCGA---TT-GATTAATATTCTGGAACAAGTTCTGAACATGTTCTCGACAGTCAATAGAA
gi|10 : AAACATGTCTGC--CATAGGACTGGCACAGGCTGAGATCAAACAATTGACAAA-T-TGATATAATCAAAGATTACAGTCATGTACT---TTGTTTTTGTATCCCAAAATCAAGTGAAATAA--A--AAATCTATA---AA--G-----------------TTATAATATCT-GT-TTA-TA-----
gi|11 : ACAAGCATTTATATT-G---AAAA----ATAATCATTTATTTTATTAGGTTGTGCCATTTTCTGTTCTTTGACGCGCGATTGATTTGATCAAGTTCT-T-ATATGAATATAAGTCCTTGA---TTTAATGAATGTTATGGAACAAGTTCTGAACATGTTCTGGACAGTAAACCGAATGaataatacaccccttcattataatgatatgattaatacaggtgatgtattgacat
gi|13 : agatgaCCAATGCT--CAAA----GAGCT---A----------AAAGATTTG-A---AAAA----AT---CATTTATTTGATTTGGCTGTGCCATTTT--A--ATTGCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GACGACTGTTCT-GAACATCTTCTGAACATGTTTTGGCCAATTAAACGAATG
gi|14 : TAAGTT---C---TACAA-CAATTATTTTCA---AAAA----AT---CATTTATTTGATTTGGCTGCTCCATTTC--G--ATTTCAC---------ATTT--TTC-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGCTCCGGAAAATCTTCTTAGCATGTTCTGGACAATGAAcg
gi|15 : CGTTCGATTCACGGTTCTGGGCAATCCGAA-CAACTAGAACAACAATTGAATACATTGGA--AGTGTCCGGAAC--ATGTCCCAGCTGTGCCGCTGAAAAAAGGTGG-GTG
gi|16 : GGCGCGTTCGATTCACGGTTCTGGAAAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTGCAGCTGTGCCGCTG-cgttc
gi|2 : GGCGCGTTCGATTCACGGTTCTGGACAATCCGGA-CAAATAGAACAACAATCGAAAACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-CTATCAAACACTTGGTAGA-T-TGATTGAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGGGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCATATGTGTTGTCTTTTTCTTTTCTATGAGCAA---------------------GTTTTAAA--CAATGGA------GAGTGATTCATCAACACT-------AATTGAGATGAATCA-T--TGGACATTGAAAGTGCCGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---CAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-TTTCC-T-TTACA----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTAGACAATGAATCGAACG
gi|3 : aGGTGCGTTCGATTCGCAGTTCTGGACAATCCGAA-CAACTAGAACAAC-----------TTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTT-GAAAAGGTGGTGAGATCGGAACAGTGACGTCA-AAACACGGCTGC--TATAACACTGACAC----T-ATATTAATCAATTTATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACT--------GT--TGATGCTG-TAT-TA---TTTA-GCACCAATGCAGA-ATA-A-----ATC----TATCATATGTGTTGTATTTTTCTTTT--TTGAGCAA---------------------GTTTTAAA--CAATGGT------GAGTGATTCATCAATACT-------AATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTCACAAATATTAAGTT---A---TACAA-CAATTGTTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGGCAATGAATCGGACG
gi|4 : gGGAGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAATAGTGTCCAGAAC--ATGTTCCAGCTATGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAACCAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTTTCCTAAAATTAAATGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGG----T-GT-TTA-TA-----GTTACA--------GT--TGATG----------------------------AGA-ATA-G-----ATA----TATCATATGTGTTGT-TTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAA--CAATGGT------GAGTGATTCATAAATACT-------AATTGAAATGAACCA-T--TGGGCATTGGAAGTG-CGCATGTCCAGTGCTTACAAATATTAAGTT---A---TACAA-CAATTTTTTT-G---AAAA----AT---CTTTTATTTGATTTGACTGCGC-----------------C---------ATTT--TCT-GTTAC-T-TTACG----------TTCGA---CT-GATGACTGGTCTGGAACATCTTCTGAACATGTTCTGGACAATGAA
gi|5 : gAAAAGGTGGTGTGATCGGAACAGTGACGTCACAAAGACAGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTTATAGA-T-CGATTCAATA------T-CAA--ATG-ATT---TTCGTTTTGTATCCTAAAATCAATTGAAATAAC-A--CAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGTAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAA--CAATGGC------GAGTGATTCATCAATACT-------TATTGAGATGGACCA-C--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTA---A---CACAA-CAATTATTTT-G---AAAA----AT---CATTTATATGATTTGGCTGCGCCATATC--G--ATTTCAC---------ATTT--TCT-GTTCA-T-TTACG----------TTCGA---TT-GATGGCTGTT-TGGAACTTATTCTGAATATGTTCTGGACAATAAATCGAACGcgcg
gi|6 : CAGTTCTGTACATTCCAAAACAACTAG---AACAATTGAATGCATTGCAGCAGTGTTTAGAACATATATTCCATTTGTGCGGCTG-TAAt
gi|6 : AC----T-AGATCAAACGATTGATAAAATGTGACACAATC-----------------A---------------ATC------TCAAGTGAAATAAA-A--AAA---AAGAAGTGATG-----------------TT-TGA----TTAC-TTA-TA------TTACA--------ATATTAGTATTAACATGTT---TTTA------AATGTGGTTATG-GTGTTTATA----GATCAGAT---TTGT---TTTCTTATCTTTAAGCAA---------------------ATTT-AAA--CTATTGT------AAGTGATCCGCAAATATT-------AATTGAGATGAATAG-TTATAGACAAAGGAAGT------TGTACAAT--------ATAT--ATTT----------------TTATT----------------T---CACTTATTTAATT--ACTGCTCCAATTT--G--ATTTCAC---------AATT--TCT-GATCCATATTCCG----------TTAAA---TT-GATGAATGTTCTGGActagatcaaacgattgataaaatgtgacacaatcaatctcaagtgaaataaaaaaaaagaagtgatgtttgattacttatattacaatattagtattaacatgtttttaaatgtggttatggtgtttatagatcagatttgttttcttatctttaagcaaatttaaactattgtaagtgatccgcaaatattaattgagatgaatagttatagacaaaggaagttgtacaatatatatttttatttcacttatttaattactgctccaatttgatttcacaatttctgatccatattccgttaaattgatgaatgttctgga
gi|7 : cagttctgtacattccaaaacaactagaacaattgaatgcattgcagcagtgtttagaacatatattccatttgtgcggctgtaGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAAGTTAAAGA-T-TGATTCAATT------T-CAA--ATT-ATTTTATTATTTTTTTATCCTAAAATCAATTCAAATAACAA--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTATTA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCTTATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------ATTTTAAA--C
gi|7 : ccTTT--TCT--TTTC-T-TTGAG------------CAAATTTT-AA--ACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATTAATCGAACGtgttctggaacatcttctgaacatgttctggacaattaatcgaacgcgcc
gi|8 : ccgtggtgtggtcggaacagtgacgtcacaaacacggctgctataacactggcactatatcaaacaagttaaagattgattcaatttcaaattattttattatttttttatcctaaaatcaattcaaataacaaaaaatgtggttgtgatgtttattagttacagttgatgctgcattatttagcaccaatgcagaatagctctatcttatgtgttgtctTTAAATACAGTGGT------TAA--ATCCATTTATAATCACATAAAATCAAAAACAAGTA-T--CGG-CATTGGAAGTG-CGCATTTCCAATGCTTACAAATAATAAGTT---ACAATACAA-TATTTATTTT-G---AAAAAAAAAT---CATTTATTTGTTTAAACTGCGCTATTTT--G--ATTTCAC---------AATA--TCT-ATCCC-T-TTACG----------TTCAA---TT-GATAAATGTcgcc
gi|9 : aaagacttcatgtttatagtgtccaataTGATTCATCAATACT-------AATTGAGATAAACTA-T--TTGACATTGGAAGTG-CGCATGTCAAATGCTTACAAATATTAAGTT---A---TACAA-GAATTATTTT-G---AAAA----AT---CATTTATTTGATATGGCTGCGCTATTTT--C--ATTTCAC---------ATTT--GCT-ATTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATATTCTGGAAAATCAATTCAACgaatcgcatgcatccaacgctttctaaaaggtcaata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAAATCACTTCAAATCATACATGATGAATAAAAAATGTGTGTTG
Unaligned ( gi|17 ): CCCCTTGAGGTTTTCATACGGAAGCAAGGGAAAGAAGACTCTGGGCGCTATGGACAATATCAAAAAATGTAACGATTTATTTTTTA
Alignments
lowQualScore : 1111 11111111 33333333333333333 1111 11111 22222222 1 111111 111111111111 444444444444444444444 111111 11 1111111 111111111 1111111111
lowQualScore : 1 5 0 0 77 5 77 0000 5 5 5 0 66666666 66 5 0 888 1 77 66 888 888 66 55555555555555555 7777 5 5 5 22222 00000000 77 1 000000 66 1 5 5 555555555555 7 888888888888888888888 999999 0 5 11 5 0 2222222 3 0 3 666 7777 666 2 66666 444444444 44 3 3 3 4444444444 555 3 1
lowQualScore : . . . . .. . .. .... . . . . ........ .. . . ... . .. .. ... ... .. ................. .... . . . ..... ........ .. . ...... .. . . . ............ . ..................... ...... . . .. . . ....... . . . ... .... ... . ..... ......... .. . . . .......... ... . .
lowQualScore : 7 7 4 1 99 7 99 6666 0 0 0 8 55555555 99 0 9 888 0 55 99 888 888 99 00000000000000000 5555 0 0 0 55555 77777777 99 4 444444 44 4 7 7 999999999999 9 666666666666666666666 222222 7 0 99 0 8 3333333 6 3 6 444 7777 444 5 00000 555555555 66 3 3 3 6666666666 888 3 0
consensus : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
Reference ( family-2105 ) : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
gi|1 : CGCATTCGATTC-------TGGACATTCCGAA-CAACTAGAACAACAATTGAATATATTGGAAAAGTGTTCGGAAT--ATGTTTCATCTGTGCCACTG-AAAACGGTGGTGTGCTCGGAACAGTTGCGTCGCAAACATGGCGGCAATAAAACAATGACAC----A-AGATCAAACAATTGATAAA-T-TGACAAAATT------T-CAA--AAA-ACT---TTGTTCTTGAATCACAAAATCGAGTGAAATAAA-AATAAA---AAG---TG--AAATAATAATACACCGCTTTGTTACT--T-ATGTTA-TAATAATGTTATAATACAGGGGT--TGA--CTGACAT-CACAGTTCAGGCACC-ATGCAGA-ATACG-----AGCAGAATATCAGATATGGTG-CCTTTCCTTTTCTTTAAGCAATGACTTAATGTTGATGTCTCTGTTTTAAGCAA--GTTTTTAACAATGATCCATAAATACTTATTGAGATGAACAAGTA-TGGACATTGGAAATT-CGTAATTACAATGATTACAAATAATAAGTTCCAA---TACAA-TATTTATTTA-GAAAAAAA----AT---CATGTATTTGATTAGGCTGTGCCATTTT--G--ATTCCAC---------GTTA--TCT-GTTCC-T-TAACG----------TTCGA---TT-GATTAATATTCTGGAACAAGTTCTGAACATGTTCTCGACAGTCAATAGAA
gi|10 : AAACATGTCTGC--CATAGGACTGGCACAGGCTGAGATCAAACAATTGACAAA-T-TGATATAATCAAAGATTACAGTCATGTACT---TTGTTTTTGTATCCCAAAATCAAGTGAAATAA--A--AAATCTATA---AA--G-----------------TTATAATATCT-GT-TTA-TA-----
gi|11 : ACAAGCATTTATATT-G---AAAA----ATAATCATTTATTTTATTAGGTTGTGCCATTTTCTGTTCTTTGACGCGCGATTGATTTGATCAAGTTCT-T-ATATGAATATAAGTCCTTGA---TTTAATGAATGTTATGGAACAAGTTCTGAACATGTTCTGGACAGTAAACCGAATGaataatacaccccttcattataatgatatgattaatacaggtgatgtattgacat
gi|13 : agatgaCCAATGCT--CAAA----GAGCT---A----------AAAGATTTG-A---AAAA----AT---CATTTATTTGATTTGGCTGTGCCATTTT--A--ATTGCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GACGACTGTTCT-GAACATCTTCTGAACATGTTTTGGCCAATTAAACGAATG
gi|14 : TAAGTT---C---TACAA-CAATTATTTTCA---AAAA----AT---CATTTATTTGATTTGGCTGCTCCATTTC--G--ATTTCAC---------ATTT--TTC-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGCTCCGGAAAATCTTCTTAGCATGTTCTGGACAATGAAcg
gi|15 : CGTTCGATTCACGGTTCTGGGCAATCCGAA-CAACTAGAACAACAATTGAATACATTGGA--AGTGTCCGGAAC--ATGTCCCAGCTGTGCCGCTGAAAAAAGGTGG-GTG
gi|16 : GGCGCGTTCGATTCACGGTTCTGGAAAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTGCAGCTGTGCCGCTG-cgttc
gi|2 : GGCGCGTTCGATTCACGGTTCTGGACAATCCGGA-CAAATAGAACAACAATCGAAAACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-CTATCAAACACTTGGTAGA-T-TGATTGAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGGGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCATATGTGTTGTCTTTTTCTTTTCTATGAGCAA---------------------GTTTTAAACAATGGA------GAGTGATTCATCAACACTAATTGAGATGAATCA-T--TGGACATTGAAAGTGCCGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---CAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-TTTCC-T-TTACA----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTAGACAATGAATCGAACG
gi|3 : aGGTGCGTTCGATTCGCAGTTCTGGACAATCCGAA-CAACTAGAACAAC-----------TTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTT-GAAAAGGTGGTGAGATCGGAACAGTGACGTCA-AAACACGGCTGC--TATAACACTGACAC----T-ATATTAATCAATTTATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACT--------GT--TGATGCTG-TAT-TA---TTTA-GCACCAATGCAGA-ATA-A-----ATC----TATCATATGTGTTGTATTTTTCTTTT--TTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTCACAAATATTAAGTT---A---TACAA-CAATTGTTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGGCAATGAATCGGACG
gi|4 : gGGAGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAATAGTGTCCAGAAC--ATGTTCCAGCTATGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAACCAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTTTCCTAAAATTAAATGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGG----T-GT-TTA-TA-----GTTACA--------GT--TGATG----------------------------AGA-ATA-G-----ATA----TATCATATGTGTTGT-TTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATAAATACTAATTGAAATGAACCA-T--TGGGCATTGGAAGTG-CGCATGTCCAGTGCTTACAAATATTAAGTT---A---TACAA-CAATTTTTTT-G---AAAA----AT---CTTTTATTTGATTTGACTGCGC-----------------C---------ATTT--TCT-GTTAC-T-TTACG----------TTCGA---CT-GATGACTGGTCTGGAACATCTTCTGAACATGTTCTGGACAATGAA
gi|5 : gAAAAGGTGGTGTGATCGGAACAGTGACGTCACAAAGACAGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTTATAGA-T-CGATTCAATA------T-CAA--ATG-ATT---TTCGTTTTGTATCCTAAAATCAATTGAAATAAC-A--CAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGTAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGC------GAGTGATTCATCAATACTTATTGAGATGGACCA-C--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTA---A---CACAA-CAATTATTTT-G---AAAA----AT---CATTTATATGATTTGGCTGCGCCATATC--G--ATTTCAC---------ATTT--TCT-GTTCA-T-TTACG----------TTCGA---TT-GATGGCTGTT-TGGAACTTATTCTGAATATGTTCTGGACAATAAATCGAACGcgcg
gi|6 : CAGTTCTGTACATTCCAAAACAACTAG---AACAATTGAATGCATTGCAGCAGTGTTTAGAACATATATTCCATTTGTGCGGCTG-TAAt
gi|6 : AC----T-AGATCAAACGATTGATAAAATGTGACACAATC-----------------A---------------ATC------TCAAGTGAAATAAA-A--AAA---AAGAAGTGATG-----------------TT-TGA----TTAC-TTA-TA------TTACA--------ATATTAGTATTAACATGTT---TTTA------AATGTGGTTATG-GTGTTTATA----GATCAGAT---TTGT---TTTCTTATCTTTAAGCAA---------------------ATTT-AAACTATTGT------AAGTGATCCGCAAATATTAATTGAGATGAATAG-TTATAGACAAAGGAAGT------TGTACAAT--------ATAT--ATTT----------------TTATT----------------T---CACTTATTTAATT--ACTGCTCCAATTT--G--ATTTCAC---------AATT--TCT-GATCCATATTCCG----------TTAAA---TT-GATGAATGTTCTGGActagatcaaacgattgataaaatgtgacacaatcaatctcaagtgaaataaaaaaaaagaagtgatgtttgattacttatattacaatattagtattaacatgtttttaaatgtggttatggtgtttatagatcagatttgttttcttatctttaagcaaatttaaactattgtaagtgatccgcaaatattaattgagatgaatagttatagacaaaggaagttgtacaatatatatttttatttcacttatttaattactgctccaatttgatttcacaatttctgatccatattccgttaaattgatgaatgttctgga
gi|7 : cagttctgtacattccaaaacaactagaacaattgaatgcattgcagcagtgtttagaacatatattccatttgtgcggctgtaGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAAGTTAAAGA-T-TGATTCAATT------T-CAA--ATT-ATTTTATTATTTTTTTATCCTAAAATCAATTCAAATAACAA--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTATTA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCTTATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------ATTTTAAAC
gi|7 : ccTTT--TCT--TTTC-T-TTGAG------------CAAATTTT-AA--ACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATTAATCGAACGtgttctggaacatcttctgaacatgttctggacaattaatcgaacgcgcc
gi|8 : ccgtggtgtggtcggaacagtgacgtcacaaacacggctgctataacactggcactatatcaaacaagttaaagattgattcaatttcaaattattttattatttttttatcctaaaatcaattcaaataacaaaaaatgtggttgtgatgtttattagttacagttgatgctgcattatttagcaccaatgcagaatagctctatcttatgtgttgtctA-T--CGG-CATTGGAAGTG-CGCATTTCCAATGCTTACAAATAATAAGTT---ACAATACAA-TATTTATTTT-G---AAAAAAAAAT---CATTTATTTGTTTAAACTGCGCTATTTT--G--ATTTCAC---------AATA--TCT-ATCCC-T-TTACG----------TTCAA---TT-GATAAATGTcgcc
gi|9 : aaagacttcatgtttatagtgtccaatattaaatacagtggttaaatccatttataatcacataaaatcaaaaacaagtTGATTCATCAATACTAATTGAGATAAACTA-T--TTGACATTGGAAGTG-CGCATGTCAAATGCTTACAAATATTAAGTT---A---TACAA-GAATTATTTT-G---AAAA----AT---CATTTATTTGATATGGCTGCGCTATTTT--C--ATTTCAC---------ATTT--GCT-ATTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATATTCTGGAAAATCAATTCAACgaatcgcatgcatccaacgctttctaaaaggtcaata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAAATCACTTCAAATCATACATGATGAATAAAAAATGTGTGTTG
Unaligned ( gi|17 ): CCCCTTGAGGTTTTCATACGGAAGCAAGGGAAAGAAGACTCTGGGCGCTATGGACAATATCAAAAAATGTAACGATTTATTTTTTA
Alignments
lowQualScore : 1111 11111111 33333333333333333 1111 11111 22222222 1 111111 111111111111 444444444444444444444 111111 11 1111111 111111111 1111111111
lowQualScore : 1 5 0 0 77 5 77 0000 5 5 5 0 66666666 66 5 0 888 1 77 66 888 888 66 55555555555555555 7777 5 5 5 22222 00000000 77 1 000000 66 1 5 5 555555555555 7 888888888888888888888 999999 0 5 11 5 0 2222222 3 0 3 666 7777 666 2 66666 444444444 44 3 3 3 4444444444 555 3 1
lowQualScore : . . . . .. . .. .... . . . . ........ .. . . ... . .. .. ... ... .. ................. .... . . . ..... ........ .. . ...... .. . . . ............ . ..................... ...... . . .. . . ....... . . . ... .... ... . ..... ......... .. . . . .......... ... . .
lowQualScore : 7 7 4 1 99 7 99 6666 0 0 0 8 55555555 99 0 9 888 0 55 99 888 888 99 00000000000000000 5555 0 0 0 55555 77777777 99 4 444444 44 4 7 7 999999999999 9 666666666666666666666 222222 7 0 99 0 8 3333333 6 3 6 444 7777 444 5 00000 555555555 66 3 3 3 6666666666 888 3 0
consensus : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
Reference ( family-2105 ) : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
gi|1 : CGCATTCGATTC-------TGGACATTCCGAA-CAACTAGAACAACAATTGAATATATTGGAAAAGTGTTCGGAAT--ATGTTTCATCTGTGCCACTG-AAAACGGTGGTGTGCTCGGAACAGTTGCGTCGCAAACATGGCGGCAATAAAACAATGACAC----A-AGATCAAACAATTGATAAA-T-TGACAAAATT------T-CAA--AAA-ACT---TTGTTCTTGAATCACAAAATCGAGTGAAATAAA-AATAAA---AAG---TG--AAATAATAATACACCGCTTTGTTACT--T-ATGTTA-TAATAATGTTATAATACAGGGGT--TGA--CTGACAT-CACAGTTCAGGCACC-ATGCAGA-ATACG-----AGCAGAATATCAGATATGGTG-CCTTTCCTTTTCTTTAAGCAATGACTTAATGTTGATGTCTCTGTTTTAAGCAA--GTTTTTAACAATGATCCATAAATACTTATTGAGATGAACAAGTA-TGGACATTGGAAATT-CGTAATTACAATGATTACAAATAATAAGTTCCAA---TACAA-TATTTATTTA-GAAAAAAA----AT---CATGTATTTGATTAGGCTGTGCCATTTT--G--ATTCCAC---------GTTA--TCT-GTTCC-T-TAACG----------TTCGA---TT-GATTAATATTCTGGAACAAGTTCTGAACATGTTCTCGACAGTCAATAGAA
gi|10 : AAACATGTCTGC--CATAGGACTGGCACAGGCTGAGATCAAACAATTGACAAA-T-TGATATAATCAAAGATTACAGTCATGTACT---TTGTTTTTGTATCCCAAAATCAAGTGAAATAA--A--AAATCTATA---AA--G-----------------TTATAATATCT-GT-TTA-TA-----
gi|11 : ACAAGCATTTATATT-G---AAAA----ATAATCATTTATTTTATTAGGTTGTGCCATTTTCTGTTCTTTGACGCGCGATTGATTTGATCAAGTTCT-T-ATATGAATATAAGTCCTTGA---TTTAATGAATGTTATGGAACAAGTTCTGAACATGTTCTGGACAGTAAACCGAATGaataatacaccccttcattataatgatatgattaatacaggtgatgtattgacat
gi|13 : agatgaCCAATGCT--CAAA----GAGCT---A----------AAAGATTTG-A---AAAA----AT---CATTTATTTGATTTGGCTGTGCCATTTT--A--ATTGCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GACGACTGTTCT-GAACATCTTCTGAACATGTTTTGGCCAATTAAACGAATG
gi|14 : TAAGTT---C---TACAA-CAATTATTTTCA---AAAA----AT---CATTTATTTGATTTGGCTGCTCCATTTC--G--ATTTCAC---------ATTT--TTC-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGCTCCGGAAAATCTTCTTAGCATGTTCTGGACAATGAAcg
gi|15 : CGTTCGATTCACGGTTCTGGGCAATCCGAA-CAACTAGAACAACAATTGAATACATTGGA--AGTGTCCGGAAC--ATGTCCCAGCTGTGCCGCTGAAAAAAGGTGG-GTG
gi|16 : GGCGCGTTCGATTCACGGTTCTGGAAAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTGCAGCTGTGCCGCTG-cgttc
gi|2 : GGCGCGTTCGATTCACGGTTCTGGACAATCCGGA-CAAATAGAACAACAATCGAAAACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-CTATCAAACACTTGGTAGA-T-TGATTGAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGGGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCATATGTGTTGTCTTTTTCTTTTCTATGAGCAA---------------------GTTTTAAACAATGGA------GAGTGATTCATCAACACTAATTGAGATGAATCA-T--TGGACATTGAAAGTGCCGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---CAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-TTTCC-T-TTACA----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTAGACAATGAATCGAACG
gi|3 : aGGTGCGTTCGATTCGCAGTTCTGGACAATCCGAA-CAACTAGAACAAC-----------TTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTT-GAAAAGGTGGTGAGATCGGAACAGTGACGTCA-AAACACGGCTGC--TATAACACTGACAC----T-ATATTAATCAATTTATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACT--------GT--TGATGCTG-TAT-TA---TTTA-GCACCAATGCAGA-ATA-A-----ATC----TATCATATGTGTTGTATTTTTCTTTT--TTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTCACAAATATTAAGTT---A---TACAA-CAATTGTTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGGCAATGAATCGGACG
gi|4 : gGGAGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAATAGTGTCCAGAAC--ATGTTCCAGCTATGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAACCAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTTTCCTAAAATTAAATGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGG----T-GT-TTA-TA-----GTTACA--------GT--TGATG----------------------------AGA-ATA-G-----ATA----TATCATATGTGTTGT-TTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATAAATACTAATTGAAATGAACCA-T--TGGGCATTGGAAGTG-CGCATGTCCAGTGCTTACAAATATTAAGTT---A---TACAA-CAATTTTTTT-G---AAAA----AT---CTTTTATTTGATTTGACTGCGC-----------------C---------ATTT--TCT-GTTAC-T-TTACG----------TTCGA---CT-GATGACTGGTCTGGAACATCTTCTGAACATGTTCTGGACAATGAA
gi|5 : gAAAAGGTGGTGTGATCGGAACAGTGACGTCACAAAGACAGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTTATAGA-T-CGATTCAATA------T-CAA--ATG-ATT---TTCGTTTTGTATCCTAAAATCAATTGAAATAAC-A--CAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGTAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGC------GAGTGATTCATCAATACTTATTGAGATGGACCA-C--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTA---A---CACAA-CAATTATTTT-G---AAAA----AT---CATTTATATGATTTGGCTGCGCCATATC--G--ATTTCAC---------ATTT--TCT-GTTCA-T-TTACG----------TTCGA---TT-GATGGCTGTT-TGGAACTTATTCTGAATATGTTCTGGACAATAAATCGAACGcgcg
gi|6 : CAGTTCTGTACATTCCAAAACAACTAG---AACAATTGAATGCATTGCAGCAGTGTTTAGAACATATATTCCATTTGTGCGGCTG-TAAt
gi|6 : AC----T-AGATCAAACGATTGATAAAATGTGACACAATC-----------------A---------------ATC------TCAAGTGAAATAAA-A--AAA---AAGAAGTGATG-----------------TT-TGA----TTAC-TTA-TA------TTACA--------ATATTAGTATTAACATGTT---TTTA------AATGTGGTTATG-GTGTTTATA----GATCAGAT---TTGT---TTTCTTATCTTTAAGCAA---------------------ATTT-AAACTATTGT------AAGTGATCCGCAAATATTAATTGAGATGAATAG-TTATAGACAAAGGAAGT------TGTACAAT--------ATAT--ATTT----------------TTATT----------------T---CACTTATTTAATT--ACTGCTCCAATTT--G--ATTTCAC---------AATT--TCT-GATCCATATTCCG----------TTAAA---TT-GATGAATGTTCTGGActagatcaaacgattgataaaatgtgacacaatcaatctcaagtgaaataaaaaaaaagaagtgatgtttgattacttatattacaatattagtattaacatgtttttaaatgtggttatggtgtttatagatcagatttgttttcttatctttaagcaaatttaaactattgtaagtgatccgcaaatattaattgagatgaatagttatagacaaaggaagttgtacaatatatatttttatttcacttatttaattactgctccaatttgatttcacaatttctgatccatattccgttaaattgatgaatgttctgga
gi|7 : cagttctgtacattccaaaacaactagaacaattgaatgcattgcagcagtgtttagaacatatattccatttgtgcggctgtaGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAAGTTAAAGA-T-TGATTCAATT------T-CAA--ATT-ATTTTATTATTTTTTTATCCTAAAATCAATTCAAATAACAA--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTATTA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCTTATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------ATTTTAAAC
gi|7 : ccTTT--TCT--TTTC-T-TTGAG------------CAAATTTT-AA--ACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATTAATCGAACGtgttctggaacatcttctgaacatgttctggacaattaatcgaacgcgcc
gi|8 : ccgtggtgtggtcggaacagtgacgtcacaaacacggctgctataacactggcactatatcaaacaagttaaagattgattcaatttcaaattattttattatttttttatcctaaaatcaattcaaataacaaaaaatgtggttgtgatgtttattagttacagttgatgctgcattatttagcaccaatgcagaatagctctatcttatgtgttgtctA-T--CGG-CATTGGAAGTG-CGCATTTCCAATGCTTACAAATAATAAGTT---ACAATACAA-TATTTATTTT-G---AAAAAAAAAT---CATTTATTTGTTTAAACTGCGCTATTTT--G--ATTTCAC---------AATA--TCT-ATCCC-T-TTACG----------TTCAA---TT-GATAAATGTcgcc
gi|9 : aaagacttcatgtttatagtgtccaatattaaatacagtggttaaatccatttataatcacataaaatcaaaaacaagtTGATTCATCAATACTAATTGAGATAAACTA-T--TTGACATTGGAAGTG-CGCATGTCAAATGCTTACAAATATTAAGTT---A---TACAA-GAATTATTTT-G---AAAA----AT---CATTTATTTGATATGGCTGCGCTATTTT--C--ATTTCAC---------ATTT--GCT-ATTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATATTCTGGAAAATCAATTCAACgaatcgcatgcatccaacgctttctaaaaggtcaata
blockSeqs : A A AT A . AGGC G A G AAAGATTA TC T TTA G CA . TCT AAG AT . TATC T . T . . AT A GTT G A T . TGTTTATA C . . . TA C ACAA G C . AAAA AAT A CTGTT GCGCGATTG GA A A A AATATAAGTC ATT T A
blockSeqs : A . . . . . . . . T . . . T C . . . . . . . . . . . . . TA G A . . CTC A . . . . . A . . . . . T A . . . . . . . . T
blockSeqs : A . . . . . . . . T . . . T C . . . . . . . . . . . . . TA G A . . ATC C . . . . . C . . . . . T G . . . . . . . . G
blockSeqs : G . . . . . . . . T . . . A C . . . . . . . . . . . . . TA G A . . ATA C . . . . . A . . . . . T G . . . . . . . . G
blockSeqs : A . . . . . . . . T . . . T C . . . . . . . . . . . . . TA . A . . ATC . . . . . . A . . . . . T G . . . . . . . . G
blockSeqs : . . . . . . . . T . . . G A . . . . . . . . . . . . . . . . . . CTC . . . . . A . . . . . T G . . . . . . . . G
blockSeqs : . . . . . . . . T . . . . . . . . . . . . . . A . . . . . T G . . . . . . . . A
blockSeqs : A . . . . . A G . . . . . . . . T
blockSeqs : . . . . . . T C . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** ** ***************** **** ***** ******** TA**** G* ATC********* ********************* ****** ** A****** ***
originalCons : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
finalCons : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CATTA----TTTAG-CACCAATGCAGA-ATA-GATC---------TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTTA------TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAAATCACTTCAAATCATACATGATGAATAAAAAATGTGTGTTG
Unaligned ( gi|17 ): CCCCTTGAGGTTTTCATACGGAAGCAAGGGAAAGAAGACTCTGGGCGCTATGGACAATATCAAAAAATGTAACGATTTATTTTTTA
Alignments
lowQualScore : 1111 11111111 33333333333333333 1111 11111 22222222 1 111111 111111111111 444444444444444444444 111111 11 1111111 111111111 1111111111
lowQualScore : 1 5 0 0 77 5 77 0000 5 5 5 0 66666666 66 5 0 888 1 77 66 888 888 66 55555555555555555 7777 5 5 5 22222 00000000 77 1 000000 66 1 5 5 555555555555 7 888888888888888888888 999999 0 5 11 5 0 2222222 3 0 3 666 7777 666 2 66666 444444444 44 3 3 3 4444444444 555 3 1
lowQualScore : . . . . .. . .. .... . . . . ........ .. . . ... . .. .. ... ... .. ................. .... . . . ..... ........ .. . ...... .. . . . ............ . ..................... ...... . . .. . . ....... . . . ... .... ... . ..... ......... .. . . . .......... ... . .
lowQualScore : 7 7 4 1 99 7 99 6666 0 0 0 8 55555555 99 0 9 888 0 55 99 888 888 99 00000000000000000 5555 0 0 0 55555 77777777 99 4 444444 44 4 7 7 999999999999 9 666666666666666666666 222222 7 0 99 0 8 3333333 6 3 6 444 7777 444 5 00000 555555555 66 3 3 3 6666666666 888 3 0
consensus : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
Reference ( family-2105 ) : NGGCGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAANTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATNAATCGAACG
gi|1 : CGCATTCGATTC-------TGGACATTCCGAA-CAACTAGAACAACAATTGAATATATTGGAAAAGTGTTCGGAAT--ATGTTTCATCTGTGCCACTG-AAAACGGTGGTGTGCTCGGAACAGTTGCGTCGCAAACATGGCGGCAATAAAACAATGACAC----A-AGATCAAACAATTGATAAA-T-TGACAAAATT------T-CAA--AAA-ACT---TTGTTCTTGAATCACAAAATCGAGTGAAATAAA-AATAAA---AAG---TG--AAATAATAATACACCGCTTTGTTACT--T-ATGTTA-TAATAATGTTATAATACAGGGGT--TGA--CTGACAT-CACAGTTCAGGCACC-ATGCAGA-ATACG-----AGCAGAATATCAGATATGGTG-CCTTTCCTTTTCTTTAAGCAATGACTTAATGTTGATGTCTCTGTTTTAAGCAA--GTTTTTAACAATGATCCATAAATACTTATTGAGATGAACAAGTA-TGGACATTGGAAATT-CGTAATTACAATGATTACAAATAATAAGTTCCAA---TACAA-TATTTATTTA-GAAAAAAA----AT---CATGTATTTGATTAGGCTGTGCCATTTT--G--ATTCCAC---------GTTA--TCT-GTTCC-T-TAACG----------TTCGA---TT-GATTAATATTCTGGAACAAGTTCTGAACATGTTCTCGACAGTCAATAGAA
gi|10 : AAACATGTCTGC--CATAGGACTGGCACAGGCTGAGATCAAACAATTGACAAA-T-TGATATAATCAAAGATTACAGTCATGTACT---TTGTTTTTGTATCCCAAAATCAAGTGAAATAA--A--AAATCTATA---AA--G-----------------TTATAATATCT-GT-TTA-TA-----
gi|11 : ACAAGCATTTATATT-G---AAAA----ATAATCATTTATTTTATTAGGTTGTGCCATTTTCTGTTCTTTGACGCGCGATTGATTTGATCAAGTTCT-T-ATATGAATATAAGTCCTTGA---TTTAATGAATGTTATGGAACAAGTTCTGAACATGTTCTGGACAGTAAACCGAATGaataatacaccccttcattataatgatatgattaatacaggtgatgtattgacat
gi|13 : agatgaCCAATGCT--CAAA----GAGCT---A----------AAAGATTTG-A---AAAA----AT---CATTTATTTGATTTGGCTGTGCCATTTT--A--ATTGCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GACGACTGTTCT-GAACATCTTCTGAACATGTTTTGGCCAATTAAACGAATG
gi|14 : TAAGTT---C---TACAA-CAATTATTTTCA---AAAA----AT---CATTTATTTGATTTGGCTGCTCCATTTC--G--ATTTCAC---------ATTT--TTC-GTTCC-T-TTACG----------TTCGA---TT-GATGACTGCTCCGGAAAATCTTCTTAGCATGTTCTGGACAATGAAcg
gi|15 : CGTTCGATTCACGGTTCTGGGCAATCCGAA-CAACTAGAACAACAATTGAATACATTGGA--AGTGTCCGGAAC--ATGTCCCAGCTGTGCCGCTGAAAAAAGGTGG-GTG
gi|16 : GGCGCGTTCGATTCACGGTTCTGGAAAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAACAGTGTCCGGAAC--ATGTTGCAGCTGTGCCGCTG-cgttc
gi|2 : GGCGCGTTCGATTCACGGTTCTGGACAATCCGGA-CAAATAGAACAACAATCGAAAACATTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-CTATCAAACACTTGGTAGA-T-TGATTGAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGGGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCATATGTGTTGTCTTTTTCTTTTCTATGAGCAA---------------------GTTTTAAACAATGGA------GAGTGATTCATCAACACTAATTGAGATGAATCA-T--TGGACATTGAAAGTGCCGCATGTCCAATGCTTACAAATATTAAGTT---A---TACAA-CAATTATTTT-G---CAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-TTTCC-T-TTACA----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTAGACAATGAATCGAACG
gi|3 : aGGTGCGTTCGATTCGCAGTTCTGGACAATCCGAA-CAACTAGAACAAC-----------TTGGAACAGTGTCCGGAAC--ATGTTCCAGCTGTGCCGCTT-GAAAAGGTGGTGAGATCGGAACAGTGACGTCA-AAACACGGCTGC--TATAACACTGACAC----T-ATATTAATCAATTTATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTATCCTAAAATCAATTGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACT--------GT--TGATGCTG-TAT-TA---TTTA-GCACCAATGCAGA-ATA-A-----ATC----TATCATATGTGTTGTATTTTTCTTTT--TTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATCAATACTAATTGAGATGAACCA-T--TGGACATTGGAAGTG-CGCATGTCCAATGCTCACAAATATTAAGTT---A---TACAA-CAATTGTTTT-G---AAAA----AT---CATTTATTTGATTTGGCTGCGCCATTTT--G--ATTTCAC---------ATTT--TCT-GTTCC-T-TTATG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATGTTCTGGGCAATGAATCGGACG
gi|4 : gGGAGCGTTCGATTCACGGTTCTGGACAATCCGAA-CAACTAGAACAACAATCGAATACATTGGAATAGTGTCCAGAAC--ATGTTCCAGCTATGCCGCTG-AAAAAGGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAACCAATTGATAGA-T-TGATTCAATC------T-CAA--ATG-ATT---TTGTTTTTGTTTCCTAAAATTAAATGAAATAAC-A--AAA---ATG---TG--G-----------------TTGTGG----T-GT-TTA-TA-----GTTACA--------GT--TGATG----------------------------AGA-ATA-G-----ATA----TATCATATGTGTTGT-TTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGT------GAGTGATTCATAAATACTAATTGAAATGAACCA-T--TGGGCATTGGAAGTG-CGCATGTCCAGTGCTTACAAATATTAAGTT---A---TACAA-CAATTTTTTT-G---AAAA----AT---CTTTTATTTGATTTGACTGCGC-----------------C---------ATTT--TCT-GTTAC-T-TTACG----------TTCGA---CT-GATGACTGGTCTGGAACATCTTCTGAACATGTTCTGGACAATGAA
gi|5 : gAAAAGGTGGTGTGATCGGAACAGTGACGTCACAAAGACAGCTGC--TATAACACTGGCAC----T-ATATCAAACAATTTATAGA-T-CGATTCAATA------T-CAA--ATG-ATT---TTCGTTTTGTATCCTAAAATCAATTGAAATAAC-A--CAA---ATG---TG--G-----------------TTGTGA----T-GT-TTA-TA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGTAGA-ATA-G-----ATC----TATCATATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------GTTTTAAACAATGGC------GAGTGATTCATCAATACTTATTGAGATGGACCA-C--TGGACATTGGAAGTG-CGCATGTCCAATGCTTACAAATATTAAGTA---A---CACAA-CAATTATTTT-G---AAAA----AT---CATTTATATGATTTGGCTGCGCCATATC--G--ATTTCAC---------ATTT--TCT-GTTCA-T-TTACG----------TTCGA---TT-GATGGCTGTT-TGGAACTTATTCTGAATATGTTCTGGACAATAAATCGAACGcgcg
gi|6 : CAGTTCTGTACATTCCAAAACAACTAG---AACAATTGAATGCATTGCAGCAGTGTTTAGAACATATATTCCATTTGTGCGGCTG-TAAt
gi|6 : AC----T-AGATCAAACGATTGATAAAATGTGACACAATC-----------------A---------------ATC------TCAAGTGAAATAAA-A--AAA---AAGAAGTGATG-----------------TT-TGA----TTAC-TTA-TA------TTACA--------ATATTAGTATTAACATGTT---TTTA------AATGTGGTTATG-GTGTTTATA----GATCAGAT---TTGT---TTTCTTATCTTTAAGCAA---------------------ATTT-AAACTATTGT------AAGTGATCCGCAAATATTAATTGAGATGAATAG-TTATAGACAAAGGAAGT------TGTACAAT--------ATAT--ATTT----------------TTATT----------------T---CACTTATTTAATT--ACTGCTCCAATTT--G--ATTTCAC---------AATT--TCT-GATCCATATTCCG----------TTAAA---TT-GATGAATGTTCTGGActagatcaaacgattgataaaatgtgacacaatcaatctcaagtgaaataaaaaaaaagaagtgatgtttgattacttatattacaatattagtattaacatgtttttaaatgtggttatggtgtttatagatcagatttgttttcttatctttaagcaaatttaaactattgtaagtgatccgcaaatattaattgagatgaatagttatagacaaaggaagttgtacaatatatatttttatttcacttatttaattactgctccaatttgatttcacaatttctgatccatattccgttaaattgatgaatgttctgga
gi|7 : cagttctgtacattccaaaacaactagaacaattgaatgcattgcagcagtgtttagaacatatattccatttgtgcggctgtaGTGGTGTGGTCGGAACAGTGACGTCACAAACACGGCTGC--TATAACACTGGCAC----T-ATATCAAACAAGTTAAAGA-T-TGATTCAATT------T-CAA--ATT-ATTTTATTATTTTTTTATCCTAAAATCAATTCAAATAACAA--AAA---ATG---TG--G-----------------TTGTGA----T-GT-TTATTA-----GTTACA--------GT--TGATGCTG-CAT-TA---TTTA-GCACCAATGCAGA-ATA-G-----CTC----TATCTTATGTGTTGTCTTTTTCTTTTCTTTGAGCAA---------------------ATTTTAAAC
gi|7 : ccTTT--TCT--TTTC-T-TTGAG------------CAAATTTT-AA--ACTGTTCTGGAACATCTTCTGAACATGTTCTGGACAATTAATCGAACGtgttctggaacatcttctgaacatgttctggacaattaatcgaacgcgcc
gi|8 : ccgtggtgtggtcggaacagtgacgtcacaaacacggctgctataacactggcactatatcaaacaagttaaagattgattcaatttcaaattattttattatttttttatcctaaaatcaattcaaataacaaaaaatgtggttgtgatgtttattagttacagttgatgctgcattatttagcaccaatgcagaatagctctatcttatgtgttgtctA-T--CGG-CATTGGAAGTG-CGCATTTCCAATGCTTACAAATAATAAGTT---ACAATACAA-TATTTATTTT-G---AAAAAAAAAT---CATTTATTTGTTTAAACTGCGCTATTTT--G--ATTTCAC---------AATA--TCT-ATCCC-T-TTACG----------TTCAA---TT-GATAAATGTcgcc
gi|9 : aaagacttcatgtttatagtgtccaatattaaatacagtggttaaatccatttataatcacataaaatcaaaaacaagtTGATTCATCAATACTAATTGAGATAAACTA-T--TTGACATTGGAAGTG-CGCATGTCAAATGCTTACAAATATTAAGTT---A---TACAA-GAATTATTTT-G---AAAA----AT---CATTTATTTGATATGGCTGCGCTATTTT--C--ATTTCAC---------ATTT--GCT-ATTCC-T-TTACG----------TTCGA---TT-GATGACTGTTCTGGAACATCTTCTGAACATATTCTGGAAAATCAATTCAACgaatcgcatgcatccaacgctttctaaaaggtcaata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAAATCACTTCAAATCATACATGATGAATAAAAAATGTGTGTTG
Unaligned ( gi|17 ): CCCCTTGAGGTTTTCATACGGAAGCAAGGGAAAGAAGACTCTGGGCGCTATGGACAATATCAAAAAATGTAACGATTTATTTTTTA