lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 1 1 1 1 22222222222 111 111 111111 22222222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 22 3333333333333333333333333333333333333333333 1111 11 1111 33 33333333333333 111 1 3333333333 22222 22 22222222222222222222222222222222 11 3333 33333 1 6666666 44444444 77777777777 111 111 22222 33333 1 2 333333 7777777777777777777777777777777777777777777777777777 2 11 1 22 111 1 6666666666 222 1 666666666666666666666666 333 11 4444444 22 3333
lowQualScore : 2 0 7 6 5 3 55555555555 444 111 999999 99999999 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 9 7 2 1111111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 3 6 7777 3 3333 6 444 11 6666666666666666666666666666666666666666666 2 99999999 33 5555 5 33 0000 7 1 7 8 99 3 8888 3 44 6 55555555555555 111 3 8 0000000000 0 0 0 99999 6 77 6 88888888888888888888888888888888 2 1 33 8 0000 6 66666 5 6 4444444 6 4 2 22222222 11111111111 666 6 3 6 000 88 3 88 4 22222 4 33333 5 0 888888 5555555555555555555555555555555555555555555555555555 3 00 0 77 3 666 7 55 3 0000000000 333 6 0 333333333333333333333333 2 555 88 6666666 77 4444 88
lowQualScore : . . . . . . ........... ... ... ...... ........ ......................................................................................................................................................................................................................................................................... . . . ....... ...................................................................................................... .. . . .... . .... . ... .. ........................................... . ........ .. .... . .. .... . . . . .. . .... . .. . .............. ... . . .......... . . . ..... . .. . ................................ . . .. . .... . ..... . . ....... . . . ........ ........... ... . . . ... .. . .. . ..... . ..... . . ...... .................................................... . .. . .. . ... . .. . .......... ... . . ........................ . ... .. ....... .. .... ..
lowQualScore : 0 5 0 0 0 2 66666666666 666 777 222222 00000000 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 5 7777777 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 00 6 8 1111 1 1111 2 000 33 8888888888888888888888888888888888888888888 5 11111111 44 7777 2 77 3333 4 8 1 0 22 0 4444 8 00 0 00000000000000 777 5 3 8888888888 2 8 8 88888 5 88 0 33333333333333333333333333333333 2 0 00 3 7777 0 00000 7 0 5555555 0 0 5 55555555 00000000000 555 0 0 0 555 55 0 55 0 00000 0 33333 0 3 333333 3333333333333333333333333333333333333333333333333333 0 00 5 55 0 000 0 00 0 5555555555 555 0 5 000000000000000000000000 5 000 00 0000000 55 5555 00
consensus : CCATTTNAGGAGGTTTCGTACCATATATGAAATATATAGTG------TTTAAAACTTTACT---TTG-----TTTA----NT--ACATGT-------TTCCCNTT-T-A--A-TCATTTCATGTACAC-GNATAGAAATTAGATCATA-AT---------------ATC-GATGAAAATNA---T-TA-ANAAGATTAAGGTACAAACAAGCACGCATTATAAT--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATA------TATAANATATGAATGANGAGTGTTTCTGTNTCA-TTAGCAGCTACAGCTCNATACAANATAAATAATAATAATAATCCAATACTATCACANACTAATTACA-------AACAT-------AT-----TT-----C-------CAT--------CAC-AC-NTATTC--GAT-----TG----------------T-------------------G--AAACAC-TATAAAG----TTT-ATGCATTA---ATC-T-A-TGTGTGGTACGAAA-C-CT-C-TCA--------------ATT--------------TGGTACGAAATT-GTAGTGGTAC--------G--AAA----CCT--CTG-N--AATTCAATTCCAGTCC-CTTACAGTGTCTGGGATAAAACTAAACTTAAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-TTC---CTACCACGACCTTGCCTATCAGGA-GGAACTAGCTCGTTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GT-AGAGGA--AGAATTAAC--CGCGCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAAGCTAATTTTGACAGCAC-TTCGTCATAC----NACCTGGTTCATAATTGCAGT-GGTCTGACGTAGCANACNTAGCTGCTCTAGTTTTNGGACCTTTTCCAAA-TCGTCCTNGAGACCNACGCAACGANGATCCNAGANGGANCCAGGCGTACTCTAANACTG-----GCCTAACTAAA-CCATGTATGCTGTT------TCTTTG------------CCATTGTCTCTNNTTGGGACATGACCCCTTATCACGGTCCTGTCTGCCTTNGAACNTGCATATTACTTNTGCGGGTATTNNANTCAACGATCACCTGTAATGGTCANCACTAAGTATNTGACAGAATAATTAACATCCTCCATCGCGTNCGCCTTCGGGTGTATAAGGAGAAGGAACAGAGCTCTTCNTCTTTCCCCAGATAACCTCAGTGNTATNNCA
Reference ( gi|1 ) : CCACTTAAGGAGGATTCATACCCTATATCAAATATATAATG------TTTAAAACTTTACT---TTG-----TTTA----TT--ACATGT-------GTCCCCTTGTGAAAAATCGTTTGCTGAACAT-GTCTAGGAATTAG---ATA-AT---------------AT--GATGAAAATAA---TTTA-AAAAAATTGAATTATAA-CAA--ATG-ATTA-AATGTATACGATTCAATTA-AAAGATCT----CTATATAAGTCCTTGTTATGGTTCAAATAAGCACGCACAAT-TAT-AATGAC-AGTGT----G-CTCAATTAGTAGACACA-CTCAA-ACATTATTAGTATCAATAATAATCCAGTACTATCACACACTAATTACA-------AACA--------AT-----TT-----C-------CAT--------CAC-AT-TTATTT--GAT-----TG----------------T-------------------G--AAACAC-TATGAAG----TTT-ATGCATTA---ATC-T-A-TGTGCAGTACGAAA-C-TT-C-TCA--------------ATT--------------TGGTACAAAATT-GTAGTGGTAC--------G--AAA----CTT--CTG-T--AACTCAGTTCCAGTCC-CTGGCAGTATTAGGCATAAAACTAAACTTGAAACTATCTGTTCTTGCATTTGGAACAATAACTTAAAAT-T--ATTTC---CTACTAAGACCTTGCCTATCAAGA-GGAACTAGCTCATTGATAGGTATGTTAGGGCTATCATTTTGACCTTTCAAGT-GAAAAATTAGAATTAATTGCATGTGATTCTTTTCTATGTTGCTTCAAGGATTTCCAGTCTAATTTAGACAGTATATTCATCATAC----AACCTTGTTCGTAATTGTAGTAAGTCTGATGTAACAAACCTAGCTGCTCTA--TTTAATACCTTGTAAAAAGTC-TCATGGAAACCTACATAGTAAGAATCCAAGACAGAACTAAGCATACTCTAAAACTG-----GCCTAAGTAAATCCATGTATGCTGTT------TCTTTG------------CCAAAGTTTTTCCTTAGAACAT----CT-----AAAGTCCTGTTTACCTTTAAACGTAC--ATTACTTATTTGGGTTTTCCATTTAA-GATCATTGGTAATGGTCACCCCCAAGTATTTGAC---AT--TT-------TCCAGAG-GTGTGCCTTCGAGTGTAT---AAGAAGGAACAGAACACTTCATCTTT--CTAGATAACCTCA-CAGTATTACAATAATTAATTCTT
gi|5 : CCACTTGAGGAGGTTTCGTACCATATATGAAATATATAGTG------TTTAAAACTTTACTGTGTTGAATACTTTA----AT--ACATGT-------TTCCCATTGT-AGAAATA--TTGATGAA-AC-AATTA--AAGTAAC--ATA-TT---------------ATTGGCTGATCATGAATGTTTG-ATAA--TTAAGGTACAAACAAGCACGCATTATAAT--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATA------TATAAA-TATGAAT-ACGAATGTTTCTG-GTC--TTAGT---TACAGCTCAATACAAAAT-------AATAATAGTCCAATACTATCACAAACTAATTACA-------AACA--------AA-----TA-----C-------CAT--------CAT-AA-GTATAT--GAT-----TG----------------TCACATCTACTAATTGGTGTG--AAACAC-TATAAAG----TTT-ATGCTTTA---ATC-T-A-TGTGTGGTACCAAA-T-CT-C-TCA--------------ATT--------------TGGTACAAAATT-GTAGTGGTAC--------A--AAA----CCT--CTG-T--AATT
gi|4 : ggaggtgtcgtaccactacagtttcgtactggatggtttcgtaCCATTTCAGAAAGTTTCGTACCATATATGAAATGTAT-------------------TTATT---TTT-----TTTA----T---ACATGT-------TTCCCATT---------CATTCCATGTACAA-GTATAGAAATTAGATCATA-AT---------------ATC-GGTAAAAATTA---TGTATGAAAGAT
gi|12 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaCCATTTGAGAAGGTTTCGTACCGTATATTAAATATATAGTG------ATTAAATTTTTACT---TTG-----TTTAATACTTTAACACAT-------GTTTCCTATTGA-------CTTCCTGTACAT-GGAGAGAAATTAG---ATATAA---------------AT--GATGAAAATAA------A-AGAAAaatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|13 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaCCATTTCAGGAGGTTTTGTACCATATATGAAATGTATAGTGATATTTTTTAAA----TACA---TA---------A----CT--ACATGT-------TTCC---TAT------TCATTTCATGTA-ATCGTATAGAACTTAGATCATA-AT---------------ATC-GATATAAATTA---Tcatagagtgtttaaaactttattttgtat
gi|23 : tctgattgggttttggaggtttcgtaccgggtggtttcgtaTATGAAATATATATTG------TTTAAAACTTTACT---TTG-----TTTA----AT--ACATGT-------gaaagatatgtttaaga
gi|17 : tttcgtacctctacaatttcgtaccacatggtttcatacaacataaagagggCT---TTG-----TTTA----AT--A-ATGTAATACAAGTTTCCT-------ATTCATTTCCTGAACAT-GGATAGAAATTTG---ATA-ATGATATATTGATATAAAT--GATGGAAATAA---T
gi|8 : AATATAT-AATGAA-AGTAT----GTCTCA-----CAGCTACA-TTTTA-AC--CATAAATAATAATAATAATCCAATACTATCACACACTAATTACA-------AACA--------AG-----TT-----TATAAGTATATGATTGAGACAC-CTACTAATT--GGT------G----------------T-------------------G--AAACAC-TATAAAG----TTT-ATGCATTA---ATC-T-T-TTTGTGGTACGAAA-C-CT-C-TCA--------------ATT--------------TTATACGAAATT-GTAATGGTAC--------G--AAA----CCT--GTGCC--AATTCAgcaatatattgtgtttagaaccttaatttgtttttactttta
gi|4 : atttctcgttaatataataAATAATAAACCATCACT--CACACACTCATTACAAACAAAAAACATA------ATAAGAGTG-----T-------GAT--------AGCGAC-TCCTTA--TAG-----TG----------------T-------------------G--AAATAC-TATATAG----TTT-ATGAATGA---ATC-aaaccggatactctacgataccatttatcttttaatagaagaactatttaagacaattatgtaactatttattatagtc
gi|15 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaACTGTCACAAACTAACTATA-------TACATA------AT-----GTAAATAC-------CAT--------CAT-AG-TTATTT--GAT-----TGACACTTTAGAATCATGT-------------------G--AAACAC-AAAAAAG----TTT-ACACATGA---AT-------GTG-AGAAAAAAA----------A--------------AAT--------------TGGTACAGAATT-GAATTGATAC--------A--AAA----CCT--ATA-TTAAATTCActtatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|11 : AATTACA-------AACATCATAATTAT-----TT-----TAGTG---CA----------AC-AC-TTAATC---AT-----TG----------------T-------------------GCGAAACAC-GATAAAA----TGT-ATGCAATA---ATC-T-A-TGTGTGGTATG---------------------------------------------TGGTACGAAAGT-GTAGTGGTAC--------GGAAAA----C-T--CTG-T--AATTCAATACCAta
gi|16 : agta-------AACA--------AT-----ATGA---C-------TAT--------CAC-AC-CTAAACAAGGT-----TG------------------------------------G--AAATAC-TATAAAG----TTT-ATGCATTA---ATC-T-A-TGTGTGGTACGAAA-C-CT-C-TCA--------------ATT--------------TGGTACAAAGTT-GCAGTGTTAC--------A--Atacataagactgtccaggttgtgtcaacttgtattgatttaaatgattgaaagagtgtcactagtttgacctgtatttactcataataagtaactaattta
gi|5 : agaatcacaaataatgacttcttaaaagatgaactgaataacccaaatAC-AT-GTATTA--AAG-----TA----------------T-------------------T--CAACAC-AGTAAAG----TTTTAAACACTATATATT-TCA-TATATGGTACGAAACC-TC-C-TCAAGTGGTACGAAACCATC--------------CAGTACGAAACT-GTAGTGGTAC--------G--ACA----CCT--C
gi|10 : gATCT--GATCATGGTG----------------T-------------------G--AAACAC-TATTGAG----TTT-ATGCATTA---ATG-T-A-CGAGTTGTACGAAA-A-CT-C-TCT--------------ATT--------------TGGTACGAAATT-GTAGTAGTAC--------G--AAA----GCT--CTG-T--AATTCttcccattgtagaaatattgatgaaacaattaaagtaacatattattggctgatcatgaatgtttgataattaaggtacaaacaagcacgcattataattttaattataaagacattacactatataattccttggttaatatatataaatatgaatacgaatgtttctggtcttagttacagctcaatacaaaataataatagtccaatactatcacaaactaattacaaacaaataccatcataagtatatgattgtcacatctactaattggtgtgaaacactataaagtttatgctttaatctatgtgtggtaccaaatctctcaatttggtacaaaattgtagtggtacaaaacctctgtaatt
gi|4 : ataattacT--GAA-----TG----------------G-------------------G--AAACATGTATAAAAAAAATAA-ATACATT-----TCAT-A-TATG--GTACGAAA-C-TTTC-TGA--------------AAT---------------GGTACGAAATT-GTAGTGGTAC--------G--AAA----CTT--Ctttatttcaagggaattcacgacttagctgaaacagaaatagacagaggaacttttggaaataaatgtattattaaacctaggttgtatttttgttcaaattacatagtggtttgttacatttagtatgattacaacgtt
gi|4 : atacaaatgtcgatcaatggttgttgg-----TG----------------T-------------------G--AAATAC-TATATAG----TTT-ATGAATGA---ATC-T-A-TGTGTGGTACGAAA-C----C-TCA--------------ATT--------------TGGTATAAAATT-GTAATGGTAC--------G--AAA----CCT--CTG-T--AA-----TTCCAATCttccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|23 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatag--AAACAA-TATATAT----TTC-ATACCCT------C-T-T-TATGTTGTATGAAA-C-C---------------------ATG--------------TGGTACGAAATT-GTAGAGGTAC--------G--AAA----aatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|12 : AAA----TTT-AATCACTATATATT-T-AATATACGGTACGAAA-CCTT-C-TCA--------------AATGGTACGAAACCACCCGGTACGAAATT-TAAGTGGTAC--------G--AAA----CCT--Caaaactttactttgtttaatacatgt
gi|13 : aaatgttcccgtttagaaatggttgttgT-ATACATT-----TCAT-A-TATG--GTACAAAA-C-CT-C-CTG--------------AAA--------------TGGTACGAAACC-ACC-CGGTAC--------G--AAA----CCT--CCA-A--AACCCAATttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaataaaagaaacatagagtgtttaaaactttattttgtat
gi|28 : tctgGTACGAGA-C-CT-CCTTA--------------AGT---------------GGTATGAAATT-GTAGTGGTAT--------G--AAA----Cgtgatattttttaaatacataactacatgtttcctattcatttcatgtaatcgtatagaacttagatcataatatcgatataaattatgaaagatatgtttaaga
gi|25 : attatgtaatggttataatggttgttggttGTATGAAA-C--------A--------------ACC--------------CGGTACAAAATT-ATAGTGGTAT--------G--AAA----CTc
gi|27 : tggcACAAAA-C-CT-C-TCA--------------ATC--------------TGGAACAAA-TT-ATAGTGGTAC--------A--AAA----TCT--GTG-T--AATTCcatttgaggaggtttatgaaatgtatagtgattaaatatttacttt
gi|7 : GGCACAAAATCAGTGGTGGCATTTGCTTTGG--AAATGACCTCAGCTG-C--AATTGAATTCCAGTCC-CTTACAGTGTTTGGGATAAAACTAAAACTAAAACTGTCTGTTCTTGCATAAGGAACAACAAACAAAGAT-T--CATTC---CTACCATGACCTTGCCTACCAGTA-GGAAACAACTCATTGATAGGAATATAAACCCTACCACTTTGATCTCTTTAGA-AGAGAATTcccaataacagctgaatccctgtaatacca
gi|2 : tgatcttgattattttaagtgcatttgacatgtgagctccgtgtatattcagaaacctacttacaacctctaacagctgaagccaggcta--CTG-G--AATTGAATTCCAGTCC-TTTACAGTGTCTGAGATAAAACTAAACTTGAAACTATCTATTCTTGCACAAGGAACAACACATGAATAC-T--ATTCCTACCTACCATGATCTTGCCTATCA------------------GA-----ATGTTAGCCCTACCATTTCGACCTTT---GTAGAAGAA----AATT---TAC-CGTGCTTCTTTTCTACGTTGATTAAAAGGTTTCCAATCTAATTTTGACAGCA----CGTCATACTACAAAACAGGTTTATAATTGTAGT----CTGACGTAACAAACCTAGCTACTCTAGTTTTA--ACCTTTTCCAAA-TCATCCTAGAGACCGACACAATGAGGATCTCAGACGGATCC-AGCGTACTCAAAGACTGAAGTCGCTTAACTAAACCCATATATGCTGTTCTTTGGCCTTTGTGGCACACGACCCCATTG-TTCTCATTAGAACAT----CTTTATCACGGTCCTATTTGTCTTAGAACTTACATATTACTTCTGTTGGTATTACATTCAACG--CA----TAATGGTCATCACTAAGTATCTGAC---ATAATTAACATCCTCCATCA-GTGTGCCTTCGAGTGTAT---GAAAAG--ACAGAACTCTTCTTCTTT--CTAGATAACCTCAGTGGTATTTCAtaccatgcttttt
gi|6 : gatctcag--CTG-A--AATTGAATTCAGGTCCGTTAACAATATCTGGGATAAAACT-----TAAAGCTATCTGTTCTTGCATAAGGAACAACAAATGAAGAT-T--CTAAC---CTACCAGGACCTTGCCTGTCAGGATGGATCTAGCCCGTTGATATAAAT-TTAGATCTACCATTTTAACCTTT---GT-AGAAG---AGGATTAAC--CAAGC--TTTTTTTCTACATTACTTCAAGGGTTTCCAAGCTAATTTAGACAG--TCTTTGTCATAC----CACCTGGTTCAAAATTtttctttctatgcccactttacgagcacatacacgtagactatcaatatcttcttgcaacatgtttccatcct
gi|19 : ctagttttacaggtatttttctgtacaatagtggcatgtgagcaccaagcacatccagaaacctacttacaacctctaactgctgaagcaaagctagccacagaatcagtggctatatttgtttggaaatgacctcag--CTG-A--AATTGAATTCCAGTCC-CTTACAGTGTCTGAGATAAAACTGAACTTAAAACTATCTATTCTTGCACAAGGAATAACAAATGCATAC-T--AATTC---CTACCACGATCTTGCTTAT
gi|9 : tcagTG-G--AATTTAATTCCAACCC-CTTAAAGTGTTTGGAATAAAACTAAACTTGAAACTATCTGTTCTTGCATAAGGAACAACAAA-TGAAAT-TCCA-TTC---CTACCACGACCTTGCCTTACAGGA-GATACTAGCTCATTGAAGGGAATGTTAGCCCTACCATTCTAACCTTT---GT-AGAAG---AGAATCAAC--CGTGT--TTCTTCTATAT
gi|26 : tctcgtttatttaaagtggaaggtcatttgacatgtgagcacctgcacatccagaaacctacttacttccaatagctgaaatcagtggctgcattctcttttgaaatgacctcagaAAACTATCTGTTATTGCACAAGGAACAGCAAATGAAGATAC--A-TTC---ATACTA----CTTGCCTA
gi|3 : caagttACGCGCTTCTTTTCTACGTTGCTTCAAGGACTTCCAAGTTAATTTTGACAGTACATTCGTCACAC----TACCTAGTTCATAGTTGC----GGTCTGACGTAGCATATATAGCTGCTCTA--TTTTGGACCTTTTTCAAA-TCGTCCTTGAGACCTACGCAACGATGATCCAAGAAGGAACTAGAT-TACTCTAAAACTG-----ACCTAACTAAAGCCATGTATGCTGTT------TCTTTG-----------------GTCTTTGC--GGGACATGACCCC-----AAA----TGTCT-CCTTTGAATATGC--ATTACTTATGCGGGTATTCAAGTTAA-GATCACCTGTAATGGTCAATACTAAGTATGTAACAGAAT--T-------------AGCATTCGCCTTCGGATGTATAAGAAGAAGGAACAGAG------ATTTTTCCCCAGATAACTTCA-TGTTATAACAgtctaaatgagtatggcacatt
gi|33 : atttaGCGTACTCTACCGTTG-----GTCTAACTAAG-CCATGTATGCTGTT------TCTTTG------------tttctttggccgaaatatcacgccccatttaacgaaccaaaacactttaactatcaatactattcttgcaacctatttctatcctcttggccttttattgacctatatcaaacacagtca
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ATAGTTTTTCGGATGATCTTGATTATTTAAAGTACAACGTCATATGGCAGGTGAGAACCATGCTCTTTCAGATATCTAGTTACAGCCTCTAACAGATGAAGCAAAGTTGACCACAGAATCGGTTGCTGCATTTCCTTATGGAAAAGACCAGAGCTGGAATTGAATTCTAA
Unaligned ( gi|18 ): TTGATCTTGATTATTTATGCAATATTTAGCACAATGAACATCTAAAAACCTACTAACAACTTCTAGCAGCTGCAGTAAAGCTAGTAACAGAATCAAGCTGGCATTCGCTTTAAAAATGA
Unaligned ( gi|20 ): TGATAACCTCATGGTATAGCAGTTTTTTACGAACCCATAAACATAAACCATCAATATCTTCCAGTAACCTGTTTCTATCCTCTTCACCATTTATAGACCTGTAACAACCACAGTCGT
Unaligned ( gi|21 ): ACCATTATAATTTCGTATTGTGCTGTTTAATACAATTTATCAGGAGGTTTTGTACTACATATGATATATGATATATATTATGTTGTAAGCTTTGTTGAATAC
Unaligned ( gi|22 ): CTTGATCTTGACTTTAAAGTGCAATATCATTTAACATAAGAGCACCACACACATCCAGAAACCTAGCTGTAACAGCTGAAGCAAAGCTAGCCACAAACCATT
Unaligned ( gi|24 ): CTAACCGCTGAAGCAAAACTAGCAACTGATTAACTAGCTACAGAATCAGTGGCTGCATTCGTTTTGAAAATGACCTCAGCTGGAATTGAATTCA
Unaligned ( gi|29 ): CCTGATCTTGATTATTAAAGTGCAGTGTCACTACTCACATCTAGAAACCTGCTTACAACCTGTAACAGCTGAAGTA
Unaligned ( gi|30 ): TTGATCTTGATTAAAGTGTAACGTCATTTGACATATAAGCTCTATGCACATTTAGAAACCTATCAACAACTTGT
Unaligned ( gi|31 ): TGTTTTGAAGAGTTGAATCGGTTGTTGGAGGTTTCGTACCAGGTGGTTTCGTACCATTTCAGGAGGGT
Unaligned ( gi|32 ): GTACACCTAGAAACCCACTTACAACCTTCTAACAGCTGTTCAAAGCAAAGCTAGCCACACTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 111111 22222222222222222 7777777777 1 1 1111 2222222 1 11 1 1 77777777 1 2222 444444 77777777777777777777777777777777777777777777777 444444444 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111 111111111111111 11111111111 1111 1111 111 333 33333 3333 2222 3333333 33 111 1 1 22222 3 222222 999999999999999999999999999999999999999999999999 1 33 2 222 99999999999999999999999999 3333 111 33 2
lowQualScore : 1 0 66 1111111 99999 555 000000 3 55 555 99999 4 00000000000000000 1 0000000000 6 3 7 2 1 0 99 2 6 4444 1 4444444 6 2 5 77 5 5 22222222 5 3 4444 000000 55555555555555555555555555555555555555555555555 8 1 777777777 11 7 1 3 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44 3 7777 3 7777 7777 0 333333333 55 2 222222222222222 2 2 99999999 333 55555555555 22 6 1 6 5 9999 5 2222 8 888 22 4 1 3 444 6 111 11111 3 2 4 1111 1 1111 0 7777777 0 1 1 00 999 3 3 2 1 1 0 0 1 1 1 1 0 6 6 1 55555 0 888888 222222222222222222222222222222222222222222222222 0 2 1 1 0 00 1 0 22 1 0 3 7 222 1 1 88888888888888888888888888 11 0 3333 6 555 1 00 0 3 1 22
lowQualScore : . . .. ....... ..... ... ...... . .. ... ..... . ................. . .......... . . . . . . .. . . .... . ....... . . . .. . . ........ . . .... ...... ............................................... . . ......... .. . . . . .............................................................................................................. .. . .... . .... .... . ......... .. . ............... . . ........ ... ........... .. . . . . .... . .... . ... .. . . . ... . ... ..... . . . .... . .... . ....... . . . .. ... . . . . . . . . . . . . . . . ..... . ...... ................................................ . . . . . .. . . .. . . . . ... . . .......................... .. . .... . ... . .. . . . ..
lowQualScore : 0 2 99 8888888 11111 222 555555 6 11 888 11111 9 00000000000000000 0 0000000000 7 0 8 2 0 8 22 0 7 2222 0 9999999 5 5 5 55 0 5 55555555 5 0 0000 000000 33333333333333333333333333333333333333333333333 8 0 888888888 55 0 2 8 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 66 3 1111 1 7777 7777 7 111111111 33 0 555555555555555 1 1 77777777 555 22222222222 66 7 7 6 7 4444 7 1111 9 888 00 6 0 2 000 0 444 55555 2 5 0 8888 0 2222 2 0000000 7 0 0 33 777 7 3 0 0 0 7 7 0 0 0 0 7 5 5 0 00000 0 888888 222222222222222222222222222222222222222222222222 7 0 0 0 7 77 0 7 00 0 7 3 3 777 0 0 00000000000000000000000000 77 7 0000 7 000 0 00 7 3 0 00
consensus : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAAT--------A--------CATGTTTCCCATT--------TCAT-TTCNTGTACACGNATAGAAATTAGATCATA--ATATCGA-TGA----AAATNAT-T-A-AAAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATAA-----TACAATATAT-AATGAC-AGTGT----GCNTCATTAGTAG-TACAGCTCAATACAANAT-AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-N-------A-T--------TT-----C----CA---------TC---AC-ACCTATTC--GAT--TG----------------T-------------------G--AAACAC-TATAAAG----TTT-ATGCATTA---ATC--T-ATGTGTGGTACGAAAC-CT-C-T-CAATTTG-GTA---------------CGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CCA--GTCTTTCCTTAGAACAT----CCT-A--A-GGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAA-GATCACC-GTAATGGTCANCACTAAGTATNTGAC-----AATTAACATCCTCCA--G-GTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
Reference ( family-1972 ) : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTANT--------A--------CATGTTTCCCNTT-T----AATCAT-TTCATGTACACGNATAGAAATTAGATCATA--ATATCGA-TGA----AAATNAT-T-A-ANAAGATTAAGGTACAAACAAGCACGCATTATAAT--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATA------TATAANATATGAATGANGAGTGTTTCTGTNTCATTAGCAGCTACAGCTCNATACAANATAAATAATAATAATAATCCAATACTATCACANACTAATTACAAAC-----A-T-------A-T--------TT-----C----CA---------TC---AC-ACNTATTC--GAT--TG----------------T-------------------G--AAACAC-TATAAAG----TTT-ATGCATTA---ATC--T-ATGTGTGGTACGAAAC-CT-C-T-CAATTTG-GTA---------------CGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTAAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCGTTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAGGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAAGCTAATTTTGACAGCAC-TTCGTCATACNAC----CTGGTTCATAATTGCAGT-GGTCTGACGTAGCANACNTAGCTGCTCTAGTTTTNGGACCTTTTCCAAA-TCGTCCTNGAGACCNACGCAACGANGATCCNAGANGGANCCAGGCGTACTCTAANACTG-----GCCTAACTAAA-CCATGTATGCTGTT------TCTTTG------------CCATTGTCTCTNNTTGGGACATGACCCCTTATCACGGTCCTGTCTGCCTTNGAACNTGCATATTACTTNTGCGGGTATTNNANTCAACGATCACCTGTAATGGTCANCACTAAGTATNTGACAGAATAATTAACATCCTCCATCGCGTNCGCCTTCGGGTGTATAAGGAGAAGGAACAGAGCTCTTCNTCTTTCCCCAGATAACCTCAGTGNTATNNCA
gi|1 : CCACTTAAGGAGGATTCATAC--CCTA-------TATCA-----AATATATA--ATG------TT-TAAAACTTTACT---TTG-----TTTATT--------A--------CATGTGTCCCCTTGTGAAAAATCGT-TTGCTGAACATGTCTAGGAATTAGAT---A--ATAT-GA-TGA----AAATAAT-TTA-AAAAAATTGAATTATAA-CAA--ATG-ATTA-AATGTATACGATTCAATTA-AAAGATCT----CTATATAAGTCCTTGTTATGGTTCAAATAAGCACGCACAAT-TAT-AATGAC-AGTGT----GCTCAATTAGTAGACACA-CTCAA-ACATTATTAGTATCAATAATAATCCAGTACTATCACACACTAATTACAAAC-----A---------A-T--------TT-----C----CA---------TC---AC-ATTTATTT--GAT--TG----------------T-------------------G--AAACAC-TATGAAG----TTT-ATGCATTA---ATC--T-ATGTGCAGTACGAAAC-TT-C-T-CAATTTG-GTA---------------CAAAATT-GTA-GTGGTAC--------GAAA---CTTC---TG-----TAACT-CAGTTCCAGTCCCTGG-CAGTATTAGGCATAAAACTAAACTTGAAACTATCTGTTCTTGCATTTGGAACAATAACTTAAAAT-T--ATT-TCCTACT----AAGACCTTGCCTATCAAGA-GGAACTAGCTCATTGATAGGTATGTTAGGGCTATCATTTTGACCTTTCAAGTGAAAAATTAGAATTAATTGCATGTGATTCTTTTCTATGTTGCTTCAAGGATTTCCAGTCTAATTTAGACAGTATATTCATCATACAAC----CTTGTTCGTAATTGTAGTAAGTCTGATGTAACAAACCTAGCTGCTCTA--TTTAATACCTTGTAAAAAGTC-TCATGGAAACCTACATAGTAAGAATCCAAGACAGAACTAAGCATACTCTAAAACTG-----GCCTAAGTAAATCCATGTATGCTGTT------TCTTTG------------CCAAAGTTTTTCCTTAGAACAT-----CT----AAAGTCCTGTTTACCTTTAAACGTAC--ATTACTTATTTGGGTTTTCCATTTAA-GATCATTGGTAATGGTCACCCCCAAGTATTTG------------ACATTTTCCAGAG-GTGTGCCTTCGAGTGTATA---AGAAGGAACAGAACACTTCATCTTT--CTAGATAACCTCA-CAGTATTACA
gi|10 : A---------TT---AC-ATCTGATC---ATGGTG----------------T-------------------G--AAACAC-TATTGAG----TTT-ATGCATTA---ATG--T-ACGAGTTGTACGAAAA-CT-C-T-CTATTTG-GTA---------------CGAAATT-GTA-GTAGTAC--------GAAA---GCTC---TG-----TAATT-Cataattaattctt
gi|11 : ataAATTACAAAC-----A-TCATAATTA-T--------TT-----TAGTGCA--------------AC-ACTTAATC---AT--TG----------------T-------------------GCGAAACAC-GATAAAA----TGT-ATGCAATA---ATC--T-ATGTGTGGTATG-----------------TG-GTA---------------CGAAAGT-GTA-GTGGTACG-------GAAA---ACTC---TG-----TAATT-CAATACCAtttatttcaagggaattcacgacttagctgaaacagaaatagacagaggaacttttggaaataaatgtattattaaacctaggttgtatttttgttcaaattacatagtggtttgttacatttagtatgattacaacgtt
gi|12 : agtaTGGTACGAAAC-CA-C-C-C-----G-GTA---------------CGAAATT-TAA-GTGGTAC--------GAAA---CCTC---tacataagactgtccaggttgtgtcaacttgtattgatttaaatgattgaaagagtgtcactagtttgacctgtatttactcataataagtaactaattta
gi|12 : aaatgttcccgtttagaaatggttgttgCCATTTGAGAAGGTTTCGTAC--CGTA-------TATTA-----AATATATA--GTG------AT-TAAATTTTTACT---TTG-----TTTAATACTTTAACA--------CATGTTTCCTAT---------TGAC-TTCCTGTACATGGAGAGAAATTAGAT-ATA--A-AT-GA-TGA----AAATAA----A-AGAAtttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaataaaagaaacatagagtgtttaaaactttattttgtat
gi|12 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaATA-------AAAGA-----AACATAGA--GTG------TT-TAAAACTTTATT---TTG-----Tacatagagtgtttaaaactttattttgtat
gi|13 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaccatttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaT-ATACATT-----TC----ATATATGGTACAAAAC-CT-C-C-TGAAATG-GTA---------------CGAAACC-AC--CCGGTAC--------GAAA---CCTC---CA-----AAACC-CAATat
gi|13 : tctgCCATTTCAGGAGGTTTTGTAC--CATA-------TATGA-----AATGTATA--GTGATATTTTT-TAAA----TAC------------ATAACT--------A--------CATGTTTCCTAT---------TCAT-TTCATGTAATCGTATAGAACTTAGATCATA--ATATCGA-TAT----AAATTAT-G-A---AAGATgtgatattttttaaatacataactacatgtttcctattcatttcatgtaatcgtatagaacttagatcataatatcgatataaattatgaaagatatgtttaaga
gi|15 : tctgattgggttttggaggtttcgtaccgggtggtttcgtaACTGTCACAAACTAACTATATAC-----A-T-------AAT--------GTAAATAC----CA---------TC---AT-AGTTATTT--GAT--TGACACTTTAGAATCATGT-------------------G--AAACAC-AAAAAAG----TTT-ACACATGA---AT-------GTGAGAAAAAAAA----------AATT-G-GTA---------------CAGAATT-GAA-TTGATAC--------AAAA---CCTA---T--------ATT-AAATTCatgtttaaga
gi|16 : AAC-----AAT-------A-T--------GA-----C----TA---------TC---AC-ACCTAAACAAGGT--TG------------------------------------G--AAATAC-TATAAAG----TTT-ATGCATTA---ATC--T-ATGTGTGGTACGAAAC-CT-C-T-CAATTTG-GTA---------------CAAAGTT-GCA-GTGTTAC--------AAata
gi|17 : agaatcacaaataatgacttcttaaaagatgaactgaataacccaaatCT---TTG-----TTTAAT--------AATGTAATACAAGTTTCCTATT---------CAT-TTCCTGAACATGGATAGAAATTTGATAATGATATATTGA-TAT----AAATGAT-
gi|17 : ATA--------ATGC-----AATATATT--GTG------TT-TAGAACCTTAAT---TTG-----TTT-TT--------A--------Cggaaataatgcaatatattgtgtttagaaccttaatttgtttttactttta
gi|19 : ctttgtttaataatgtaatacaagtttcctattcatttcctgaacatggatagaaatttgataatgatatattgatataaatgatggaaC---TG-----AAATT-GAATTCCAGTCCCTTA-CAGTGTCTGAGATAAAACTGAACTTAAAACTATCTATTCTTGCACAAGGAATAACAAATGCATAC-TA-A-T-TCCTACC----ACGATCTTGCTTATtttta
gi|2 : tcagC---TG-----GAATT-GAATTCCAGTCCTTTA-CAGTGTCTGAGATAAAACTAAACTTGAAACTATCTATTCTTGCACAAGGAACAACACATGAATAC-T--A-T-TCCTACCTACCATGATCTTGCCTATCAG-----------------------AATGTTAGCCCTACCATTTCGACCTTT---GTAGAAGA--A-AATTTACCGT--GC--TTCTTTTCTACGTTGATTAAAAGGTTTCCAATCTAATTTTGACAGCA----CGTCATACTACAAAACAGGTTTATAATT---GT-AGTCTGACGTAACAAACCTAGCTACTCTAGTTTTA--ACCTTTTCCAAA-TCATCCTAGAGACCGACACAATGAGGATCTCAGACGGATCCA-GCGTACTCAAAGACTGAAGTCGCTTAACTAAACCCATATATGCTGTTCTTTGGCCTTTGTGGCACACGACCCCATTGT-TCTCATTAGAACAT----CTTTATCACGGTCCTATTTGTCTTAGAACTTACATATTACTTCTGTTGGTATTACATTCAACG--CA----TAATGGTCATCACTAAGTATCTGAC---ATAATTAACATCCTCCATCA-GTGTGCCTTCGAGTGTAT---GAAAAG--ACAGAACTCTTCTTCTTT--CTAGATAACCTCAGTGGTATTTCA
gi|21 : gatctcagTCAGGAGGTTTTGTAC--TACA-------TATGATATATGATATATATTATG------TTGTAA------GCT---TTG-----TTGAAT--------A--------Ctttctttctatgcccactttacgagcacatacacgtagactatcaatatcttcttgcaacatgtttccatcct
gi|23 : accattataatttcgtattgtgctgtttaatacaattta--AAACAA-TATATAT----TTC-ATACCCT------C--T-TTATGTTGTATGAAAC-C--------ATGTG-GTA---------------CGAAATT-GTA-GAGGTAC--------GAAA---
gi|23 : GGTTTCATACAACATAAAGAGGGTATGA-----AATATATA--TTG------TT-TAAAACTTTACT---TTG-----TTTAAT--------A--------CATGTaaaactttactttgtttaatacatgt
gi|25 : tttcgtacctctacaatttcgtaccacatTGGTATGAAAC---------AACCCG-GTA---------------CAAAATT-ATA-GTGGTAT--------GAAA---C
gi|25 : tggcaCCATTTGAGGAGGTTT-------------------ATGA-----AATGTATA--GTG------AT-TAAATATTTACT---TTtttgaggaggtttatgaaatgtatagtgattaaatatttacttt
gi|26 : tggcagtttcataccactataattttgtaccgggttgtttcataAAACTATCTGTTATTGCACAAGGAACAGCAAATGAAGATAC--A-T-TCATACT----A----CTTGCCTA
gi|27 : caagttACAAAAC-CT-C-T-CAATCTG-GAA---------------C-AAATT-ATA-GTGGTAC--------AAAA---TCTG---TG-----TAATT-Cgtctaaatgagtatggcacatt
gi|28 : GGTACGAGAC-CT-CCT-TAAGT-G-GTA---------------TGAAATT-GTA-GTGGTAT--------GAAA---Ccccaataacagctgaatccctgtaatacca
gi|3 : attatgtaatggttataatggttgttggttTTAAC-----GCGCTTCTTTTCTACGTTGCTTCAAGGACTTCCAAGTTAATTTTGACAGTACATTCGTCACACTAC----CTAGTTCATAGTTGC----GGTCTGACGTAGCATATATAGCTGCTCTA--TTTTGGACCTTTTTCAAA-TCGTCCTTGAGACCTACGCAACGATGATCCAAGAAGGAACTAGAT-TACTCTAAAACTG-----ACCTAACTAAAGCCATGTATGCTGTT------TCTTTG-----------------GTCTTTGC--GGGACATGACCCCAAA---------TGTCT-CCTTTGAATATGC--ATTACTTATGCGGGTATTCAAGTTAA-GATCACCTGTAATGGTCAATACTAAGTATGTAACAG---AATTA------------GCATTCGCCTTCGGATGTATAAGAAGAAGGAACAGAG------ATTTTTCCCCAGATAACTTCA-TGTTATAACA
gi|31 : atTG-GTA---------------CGAAACC-ACC--TGGTAC--------GAAA---CCTC---CAACAACCGATT-CAACTCtttctttggccgaaatatcacgccccatttaacgaaccaaaacactttaactatcaatactattcttgcaacctatttctatcctcttggccttttattgacctatatcaaacacagtca
gi|31 : tgttttgaaTGGTACGAAAC-C--------ACCTG-GTA---------------CGAAAtttcaggagggt
gi|33 : tgttttgaagagttgaatcggttgttggaggGGCGTACTCTACCGTTG-----GTCTAACTAAG-CCATGTATGCTGTT------TCTTTG------------tttcaggagggt
gi|4 : gaggcagct--GAA--TG----------------G-------------------G--AAACATGTATAAAAAAAATAA-ATACATT-----TC----ATATATGGTACGAAACTTT-C-T-GAA-ATG-GTA---------------CGAAATT-GTA-GTGGTAC--------GAAA---CTTC---attt
gi|4 : atacaaatgtcgatcaatggttgttggCCATTTCAGAAAGTTTCGTAC--CATA-------TATGA-----AATGTAT----------------------TTATT---TTT-----TTTA-T--------A--------CATGTTTCCCATT---------CAT-TCCATGTACAAGTATAGAAATTAGATCATA--ATATCGG-TAA----AAATTATGT-ATGAAAGATattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaATG-------TATGA-----AAGATAAT--GTG------TT-TAAAACTTTATT---TTG-----TTTAAT--------A--------CAaatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattGCTCAATTTAAAG--AACAA-AATAATAAACCATCACT--CACACACTCATTACAAACAAAAAA-C-------A-TAATAAGAGTG-----T----GA---------TA---GCGACTCCTTA--TAG--TG----------------T-------------------G--AAATAC-TATATAG----TTT-ATGAATGA---ATCCTT-AT-CATAGTGTGAAATACT-A-TATAGTTTATGAA---------------TGAATCT-ATGTGTGGTAC--------GAAA---CCTC-----------AATT-aacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtat--TG----------------T-------------------G--AAATAC-TATATAG----TTT-ATGAATGA---ATC--T-ATGTGTGGTACGAAAC----C-T-CAATTTG-GTA---------------TAAAATT-GTA-ATGGTAC--------GAAA---CCTC---TG-----TAATTCCAATtggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatag---AC-ATGTATTA--AAG--TA----------------T-------------------T--CAACAC-AGTAAAG----TTTTAAACACTATATATT--TCATATATGGTACGAAAC-CTCC-T-CAA-GTG-GTACGAAACCATCCAGTACGAAACT-GTA-GTGGTAC--------GACA---CCTC---caatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : gCCACTTGAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACTGTGTTGAATACTTTAAT--------A--------CATGTTTCCCATTGT----AGAAATATTGATG-AAACAATTA--AAGTAA--CATA--TTATTGGCTGATCATGAATGTT-T-G-ATAA--TTAAGGTACAAACAAGCACGCATTATAAT--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATA------TATAA-ATATGAAT-ACGAATGTTTCTG-GTC-TTAGT---TACAGCTCAATACAA-------AATAATAATAGTCCAATACTATCACAAACTAATTACAAAC-----A-A-------A-T--------A------C----CA---------TC---AT-AAGTATAT--GAT--TG----------------TCACATCTACTAATTGGTGTG--AAACAC-TATAAAG----TTT-ATGCTTTA---ATC--T-ATGTGTGGTACCAAAT-CT-C-T-CAATTTG-GTA---------------CAAAATT-GTA-GTGGTAC--------AAAA---CCTC---TG-----TAATT-ttcccattgtagaaatattgatgaaacaattaaagtaacatattattggctgatcatgaatgtttgataattaaggtacaaacaagcacgcattataattttaattataaagacattacactatataattccttggttaatatatataaatatgaatacgaatgtttctggtcttagttacagctcaatacaaaataataatagtccaatactatcacaaactaattacaaacaaataccatcataagtatatgattgtcacatctactaattggtgtgaaacactataaagtttatgctttaatctatgtgtggtaccaaatctctcaatttggtacaaaattgtagtggtacaaaacctctgtaatt
gi|6 : ggaggtgtcgtaccactacagtttcgtactggatggtttcgtaA---CCTCAGCTG-----AAATT-GAATTCAGGTCCGTTAACAATATCTGGGATAAAACT-----TAAAGCTATCTGTTCTTGCATAAGGAACAACAAATGAAGAT-T--C-TAACCTACC----AGGACCTTGCCTGTCAGGATGGATCTAGCCCGTTGATATAAAT-TTAGATCTACCATTTTAACCTTT---GTAGAAG---AGGATTAAC--C--AAGCTTTTTTTCTACATTACTTCAAGGGTTTCCAAGCTAATTTAGACAGT-C-TTTGTCATACCAC----CTGGTTCAAAATT
gi|7 : ctagttttacaggtatttttctgtacaatagtggcatgtgagcaccaagcacatccagaaacctacttacaacctctaactgctgaagcaaagctagccacagaatcagtggctatatttgtttggaaatgG-GCA---------------CAAAATCAGTG-GTGGCATTTGCTTTGGAAATGACCTCAGCTG-----CAATT-GAATTCCAGTCCCTTA-CAGTGTTTGGGATAAAACTAAAACTAAAACTGTCTGTTCTTGCATAAGGAACAACAAACAAAGAT-TC-A-T-TCCTACC----ATGACCTTGCCTACCAGTA-GGAAACAACTCATTGATAGGAATATAAACCCTACCACTTTGATCTCT---TTAGAAG---AGAATTTACCAT--GC
gi|8 : tgatcttgattattttaagtgcatttgacatgtgagctccgtgtatattcagaaacctacttacaacctctaacagctgaagccaggctaATTTCTCG------TTAATATAA-----TA-AATATAT-AATGAA-AGTAT----GTCTCA----CAGCTACATTTTAAC----CATAAATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-A-------G-T--------TT-----A----TAAGTATATGATTGAGAC-ACCTACT---AAT--TGGTG-------------T-------------------G--AAACAC-TATAAAG----TTT-ATGCATTA---ATC--T-TTTTGTGGTACGAAAC-CT-C-T-CAATTTT-ATA---------------CGAAATT-GTA-ATGGTAC--------GAAA---CCTG---TGC----CAATT-CAAttttt
gi|9 : A---CCTCAGATG-----GAATT-TAATTCCAACCCCTTA-AAGTGTTTGGAATAAAACTAAACTTGAAACTATCTGTTCTTGCATAAGGAACAACAAATGAA-AT-TCCA-T-TCCTACC----ACGACCTTGCCTTACAGGA-GATACTAGCTCATTGAAGGGAATGTTAGCCCTACCATTCTAACCTTT---GTAGAAG---AGAATCAAC--C--GTGTTTCTTCTATAaaccggatactctacgataccatttatcttttaatagaagaactatttaagacaattatgtaactatttattatagtc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAGTTTTTCGGATGATCTTGATTATTTAAAGTACAACGTCATATGGCAGGTGAGAACCATGCTCTTTCAGATATCTAGTTACAGCCTCTAACAGATGAAGCAAAGTTGACCACAGAATCGGTTGCTGCATTTCCTTATGGAAAAGACCAGAGCTGGAATTGAATTCTAA
Unaligned ( gi|18 ): TTGATCTTGATTATTTATGCAATATTTAGCACAATGAACATCTAAAAACCTACTAACAACTTCTAGCAGCTGCAGTAAAGCTAGTAACAGAATCAAGCTGGCATTCGCTTTAAAAATGA
Unaligned ( gi|20 ): TGATAACCTCATGGTATAGCAGTTTTTTACGAACCCATAAACATAAACCATCAATATCTTCCAGTAACCTGTTTCTATCCTCTTCACCATTTATAGACCTGTAACAACCACAGTCGT
Unaligned ( gi|22 ): CTTGATCTTGACTTTAAAGTGCAATATCATTTAACATAAGAGCACCACACACATCCAGAAACCTAGCTGTAACAGCTGAAGCAAAGCTAGCCACAAACCATT
Unaligned ( gi|24 ): CTAACCGCTGAAGCAAAACTAGCAACTGATTAACTAGCTACAGAATCAGTGGCTGCATTCGTTTTGAAAATGACCTCAGCTGGAATTGAATTCA
Unaligned ( gi|29 ): CCTGATCTTGATTATTAAAGTGCAGTGTCACTACTCACATCTAGAAACCTGCTTACAACCTGTAACAGCTGAAGTA
Unaligned ( gi|30 ): TTGATCTTGATTAAAGTGTAACGTCATTTGACATATAAGCTCTATGCACATTTAGAAACCTATCAACAACTTGT
Unaligned ( gi|32 ): GTACACCTAGAAACCCACTTACAACCTTCTAACAGCTGTTCAAAGCAAAGCTAGCCACACTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 111111 22222222222222222 444444444 111111 222 1 1111 2222222 1 11 1 1 33333333 1 2222 444444 4444444444 1 555555555555555555 555555555 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111 111111111 11111111111 1111 1111 111 333 33333 1 2222 44444 33 22 1 1 22222 222222 7777777777777777 1 4444444444 1 11 333 7777777777777777777777 3333 33 11 11
lowQualScore : 1 0 66 1111111 99999 555 000000 3 55 555 99999 4 33333333333333333 777777777 3 6 1 999999 6 000 99 2 6 4444 1 9999999 8 1 5 77 5 5 55555555 5 1 4444 0 000000 8888888888 7 7 6 3 777777777777777777 8 000000000 11 7 1 3 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44 3 0 7777 99999999 22222222 1 999999999 22 2 2 2 99999999 333 55555555555 22 6 1 6 5 9999 5 2222 8 888 22 1 3 444 111 11111 3 1 1 3 5 0 1 1111 0 44444 11 55 1 3 2 1 0 0 6 6 0 55555 44 888888 4444444444444444 3 3 7 9999999999 77 2 1 88 0 6 444 1 1 0000000000000000000000 0 7777 6 33 88 44
lowQualScore : . . .. ....... ..... ... ...... . .. ... ..... . ................. ......... . . . ...... . ... .. . . .... . ....... . . . .. . . ........ . . .... . ...... .......... . . . . .................. . ......... .. . . . ....................................................................................................... .. . . .... ........ ........ . ......... .. . . . ........ ... ........... .. . . . . .... . .... . ... .. . . ... ... ..... . . . . . . . .... . ..... .. .. . . . . . . . . . ..... .. ...... ................ . . . .......... .. . . .. . . ... . . ...................... . .... . .. .. ..
lowQualScore : 0 2 99 8888888 11111 222 555555 6 11 888 11111 4 22222222222222222 888888888 3 3 0 222222 7 000 22 0 7 2222 0 8888888 2 0 5 55 0 5 00000000 5 0 0000 7 000000 0000000000 3 3 7 3 000000000000000000 8 222222222 55 0 2 8 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 66 3 9 1111 66666666 33333333 4 111111111 11 0 1 1 77777777 555 22222222222 66 7 7 6 7 4444 7 1111 9 888 00 0 2 000 444 55555 2 0 0 2 5 2 2 2222 2 33333 77 33 0 3 0 0 7 7 5 5 8 00000 22 888888 6666666666666666 7 3 3 7777777777 33 0 0 33 7 7 000 0 0 7777777777777777777777 7 7777 7 33 33 00
consensus : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNAT-T-A-A-AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACAGCTCAATACAATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----AN-------A-T--------TT-----C----CA---------T--------------C---AC-ACCTANTC--GAT--TG----------------TG--AAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCATC-TCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
Reference ( family-1972 ) : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT--------TCATTTCNTGTACACGNATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNAT-T-A-A-AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TACAATATATAATGAC-AGTGT----GCNTCATTAGTAG-TACAGCTCAATACAANAT-AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----AN-------A-T--------TT-----C----CA---------T--------------C---AC-ACCTATTC--GAT--TG----------------TG--AAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTCTT-TCCTTAGAACAT---CCT----AAGGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCACC-GTAATGGTCANCACTAAGTATNTGAC--AATTAACATCCTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
gi|1 : CCACTTAAGGAGGATTCATAC--CCTA-------TATCA-----AATATATA--ATG------TT-TAAAACTTTACT---TTG-----TTTAT-T--------A--------CATGTGTCCCCTTGTGAAAAATCGTTTGCTGAACATGTCTAGG------AATTAGA-T-----A--ATAT-GA-TGA----AAATAAT-TTA-A-AAAAATTGAATTATAA-CAA--ATG-ATTA-AATGTATACGATTCAATTA-AAAGATCT----CTATATAAGTCCTTGTTATGGTTCAAATA-AGCACGCACAAT-TATAATGAC-AGTGT----GCTCAATTAGTAGACACA-CTCAA-ACATTATTAGTATCAATAATAATCCAGTACTATCACACACTAATTACAAAC-----A--------A-T--------TT-----C----CA---------T--------------C---AC-ATTTATTT--GAT--TG----------------TG--AAACAC-TATGAAG----TTTATGCAT--TA----ATC--T-----ATGTGCAGTACGAAAC-TTC-T-CAATTTG-GTACAAAATT-GTA-GTGGTAC--------GAAA---CTTC---TG-----TAACT-CAGTTCCAGTCCCTGG-CAGTATTAGGCATAAAACTAAACTTGAAACTATCTGTTCTTGCATTTGGAACAATAACTTAAAAT-T--ATT-TCCTACT----AAGACCTTGCCTATCAAGA-GGAACTAGCTCATTGATAGGTATGTTAGGGCTATCATTTTGACCTTTCAAGTGAAAAATTAGAATTAATTGCATGTGATTCTTTTCTATGTTGCTTCAAGGATTTCCAGTCTAATTTAGACAGTATATTCATCATACAAC----CTTGTTCGTAATTGTAGTAAGTCTGATGTAACAAACCTAGCTGCTCTA--TTTAATACCTTGTAAAAAGTC-TCATGGAAACCTACATAGTAAGAATCCAAGACAGAACTAAGCATACTCTAAAACTG-----GCCTAAGTAAATCCATGTATGCTGTT------TCTTTG------------CCAAAGTTTT-TCCTTAGAACAT----CT----AAAGTCCTGTTTACCTTTAAACGTAC--ATTACTTATTTGGGTTTTCCATTTAAGATCATTGGTAATGGTCACCCCCAAGTATTTGAC--ATTT-------TCCAGA--GGTGTGCCTTCGAGTGTATA---AGAAGGAACAGAACACTTCATCTTT--CTAGATAACCTCA-CAGTATTACA
gi|10 : A---------T--------------T---AC-ATCTGATC---ATGGTG----------------TG--AAACAC-TATTGAG----TTTATGCAT--TA----ATG--T-----ACGAGTTGTACGAAAA-CTC-T-CTATTTG-GTACGAAATT-GTA-GTAGTAC--------GAAA---GCTC---TG-----TAATT-Cataattaattctt
gi|11 : ataAATTACAAAC-----ATCATAATTA-T--------TT-----TAGTGCA----------------------------AC-ACTTAATC---AT--TG----------------TGCGAAACAC-GATAAAA----TGTATGCAA--TA----ATC--T-----ATGTGTGGTATG----------------TG-GTACGAAAGT-GTA-GTGGTACG-------GAAA---ACTC---TG-----TAATT-CAATACCAtttatttcaagggaattcacgacttagctgaaacagaaatagacagaggaacttttggaaataaatgtattattaaacctaggttgtatttttgttcaaattacatagtggtttgttacatttagtatgattacaacgtt
gi|12 : agtaTGGTACGAAAC-CAC-C-C-----G-GTACGAAATT-TAA-GTGGTAC--------GAAA---CCTC---tacataagactgtccaggttgtgtcaacttgtattgatttaaatgattgaaagagtgtcactagtttgacctgtatttactcataataagtaactaattta
gi|12 : aaatgttcccgtttagaaatggttgttgCCATTTGAGAAGGTTTCGTAC--CGTA-------TATTA-----AATATATA--GTG------AT-TAAATTTTTACT---TTG-----TTTAA-TACTTTAACA--------CATGTTTCCTA-T--------TGACTTCCTGTACATGGAGAGA------AATTAGA-T---ATA--A-AT-GA-TGA----AAATAA----A-AGAAACATAGAGtttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaataaaagaaacatagagtgtttaaaactttattttgtat
gi|12 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaATA-------AAAGA-----AACATAGA--GTG------TT-TAAAACTTTATT---TTG-----Ttgtttaaaactttattttgtat
gi|13 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaccatttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaTATACAT--T------TC--------ATATATGGTACAAAAC-CTC-C-TGAAATG-GTACGAAACC-AC--CCGGTAC--------GAAA---CCTC---CA-----AAACC-CAATat
gi|13 : tctgCCATTTCAGGAGGTTTTGTAC--CATA-------TATGA-----AATGTATA--GTGATATTTTT-TAAA----TACA---T----------AACT--------A--------CATGTTTCCTATT---------CATTTCATGTAATCGTATAGA------ACTTAGA-T--CATA--ATATCGA-TAT----AAATTAT-----G-AAAGATgtgatattttttaaatacataactacatgtttcctattcatttcatgtaatcgtatagaacttagatcataatatcgatataaattatgaaagatatgtttaaga
gi|15 : tctgattgggttttggaggtttcgtaccgggtggtttcgtaACTGTCACAAACTAACTATATAC-----AT-------AAT--------GTAAATAC----CA---------T--------------C---AT-AGTTATTT--GAT--TGACACTTTAGAATCATGTG--AAACAC-AAAAAAG----TTTACACAT--GA----AT-----------GTGAGAAAAAAAA---------AATT-G-GTACAGAATT-GAA-TTGATAC--------AAAA---CCTA---T--------ATT-AAATTCatgtttaaga
gi|16 : -----C----TA---------T--------------C---AC-ACCTAAACAAGGT--TG-----------------G--AAATAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACAAAGTT-GCA-GTGTTAC--------AAata
gi|17 : agaatcacaaataatgacttcttaaaagatgaactgaataacccaaataacaatatgaCT---TTG-----TTTAA-T--------AATGTAATACAAGTTTCCTATT---------CATTTCCTGAACATGGATAGA------AATTTGA-T--AATGATATATTGA-TAT----AAATGAT-G-G-A-AA
gi|17 : ATA--------ATGC-----AATATATT--GTG------TT-TAGAACCTTAAT---TTG-----TTTtaatgcaatatattgtgtttagaaccttaatttgtttttactttta
gi|19 : ctttgtttaataatgtaatacaagtttcctattcatttcctgaacatggatagaaatttgataatgatatattgatataaatgatggaaC---TG-----AAATT-GAATTCCAGTCCCTTA-CAGTGTCTGAGATAAAACTGAACTTAAAACTATCTATTCTTGCACAAGGAATAACAAATGCATAC-TA-A-T-TCCTACC----ACGATCTTGCTTATttactttta
gi|2 : tcagC---TG-----GAATT-GAATTCCAGTCCTTTA-CAGTGTCTGAGATAAAACTAAACTTGAAACTATCTATTCTTGCACAAGGAACAACACATGAATAC-T--A-T-TCCTACCTACCATGATCTTGCCTATCAG-----------------------AATGTTAGCCCTACCATTTCGACCTTT---GTAGAAGA--A-AATTTACCGT--GC--TTCTTTTCTACGTTGATTAAAAGGTTTCCAATCTAATTTTGACAGCAC----GTCATACTACAAAACAGGTTTATAATTG---T-AGTCTGACGTAACAAACCTAGCTACTCTAGTTTTA--ACCTTTTCCAAA-TCATCCTAGAGACCGACACAATGAGGATCTCAGACGGATCCA-GCGTACTCAAAGACTGAAGTCGCTTAACTAAACCCATATATGCTGTTCTTTGGCCTTTGTGGCACACGACCCC--ATTGTTCTCATTAGAACAT---CTTTATCACGGTCCTATTTGTCTTAGAACTTACATATTACTTCTGTTGGTATTACATTCAA---CG-C-ATAATGGTCATCACTAAGTATCTGACATAATTAACATCCTCC--ATCAGTGTGCCTTCGAGTGTAT---GAAAAG--ACAGAACTCTTCTTCTTT--CTAGATAACCTCAGTGGTATTTCA
gi|21 : gatctcagTCAGGAGGTTTTGTAC--TACA-------TATGATATATGATATATATTATG------TTGTAA------GCT---TTG-----TTGAA-T--------A--------Ctttctttctatgcccactttacgagcacatacacgtagactatcaatatcttcttgcaacatgtttccatcct
gi|23 : accattataatttcgtattgtgctgtttaatacaattta--AAACAA-TATATAT----TTCATACCC--T-------C--T-----TTATGTTGTATGAAAC-C-------ATGTG-GTACGAAATT-GTA-GAGGTAC--------GAAA---
gi|23 : GGTTTCATACAACATAAAGAGGGTATGA-----AATATATA--TTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTaaaactttactttgtttaatacatgt
gi|25 : tttcgtacctctacaatttcgtaccacatTGGTATGAAAC--------AACCCG-GTACAAAATT-ATA-GTGGTAT--------GAAA---C
gi|25 : tggcaCCATTTGAGGAGGTTT-------------------ATGA-----AATGTATA--GTG------AT-TAAATATTTACT---TTtttgaggaggtttatgaaatgtatagtgattaaatatttacttt
gi|26 : tggcagtttcataccactataattttgtaccgggttgtttcataAAACTATCTGTTATTGCACAAGGAACAGCAAATGAAGATAC--A-T-TCATACT----A----CTTGCCTA
gi|27 : caagttACAAAAC-CTC-T-CAATCTG-GAAC-AAATT-ATA-GTGGTAC--------AAAA---TCTG---TG-----TAATT-Cgtctaaatgagtatggcacatt
gi|28 : GGTACGAGAC-CTCCT-TAAGT-G-GTATGAAATT-GTA-GTGGTAT--------GAAA---Ccccaataacagctgaatccctgtaatacca
gi|3 : attatgtaatggttataatggttgttggttTTAAC-----GCGCTTCTTTTCTACGTTGCTTCAAGGACTTCCAAGTTAATTTTGACAGTACATTCGTCACACTAC----CTAGTTCATAGTTGC-G---GTCTGACGTAGCATATATAGCTGCTCTAT-TTTGG-ACCTTTTTCAAA-TCGTCCTTGAGACCTACGCAACGATGATCCAAGAAGGAACTAGAT-TACTCTAAAACTG-----ACCTAACTAAAGCCATGTATGCTGTT------TCTTTG-----------------GTCTT-TGC--GGGACATGACCCC----AAA----TGTCT-CCTTTGAATATGC--ATTACTTATGCGGGTATTCAAGTTAAGATCACCTGTAATGGTCAATACTAAGTATGTAACAGAATTAGCATT-------------CGCCTTCGGATGTATAAGAAGAAGGAACAGAG------ATTTTTCCCCAGATAACTTCA-TGTTATAACA
gi|31 : atTG-GTACGAAACC-ACC--TGGTAC--------GAAA---CCTC---CAACAACCGATT-CAACTCtttctttggccgaaatatcacgccccatttaacgaaccaaaacactttaactatcaatactattcttgcaacctatttctatcctcttggccttttattgacctatatcaaacacagtca
gi|31 : tgttttgaaTGGTACGAAAC-C-------ACCTG-GTACGAAAtttcaggagggt
gi|33 : tgttttgaagagttgaatcggttgttggaggGGCGTACTCTACCGTTG-----GTCTAACTAA-GCCATGTATGCTGTT------TCTTTG------------tttcaggagggt
gi|4 : gaggcagct--GAA--TG----------------GG--AAACATGTATAAAAAAAATAAATACAT--T------TC--------ATATATGGTACGAAACTTTC-T-GAA-ATG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CTTC---attt
gi|4 : atacaaatgtcgatcaatggttgttggCCATTTCAGAAAGTTTCGTAC--CATA-------TATGA-----AATGTAT----------------------TTATT---TTT-----TTTA--T--------A--------CATGTTTCCCATT---------CATTCCATGTACAAGTATAGA------AATTAGA-T--CATA--ATATCGG-TAA----AAATTATGT-ATG-AAAGATattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaATG-------TATGA-----AAGATAAT--GTG------TT-TAAAACTTTATT---TTG-----TTTAA-T--------A--------CAaatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattGCTCAATTTAA-AG-AACAA-AATAATAAACCATCACT--CACACACTCATTACAAACAAAAAAC-------A-TAATAAGAGTG-----T----GA---------T--------------A---GCGACTCCTTA--TAG--TG----------------TG--AAATAC-TATATAG----TTTATGAAT--GA----ATCCTT-----AT-CATAGTGTGAAATACTA-TATAGTTTATGAATGAATCT-ATGTGTGGTAC--------GAAA---CCTC-----------AATT-aacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtat--TG----------------TG--AAATAC-TATATAG----TTTATGAAT--GA----ATC--T-----ATGTGTGGTACGAAAC---C-T-CAATTTG-GTATAAAATT-GTA-ATGGTAC--------GAAA---CCTC---TG-----TAATTCCAATtggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatag--AAACAC-TATATAT----TTCATATATGGTACGAAACC--TCCTCAA---GTGGTACGAAAC-C-------ATCCA-GTACGAAACT-GTA-GTGGTAC--------GACA---CCTC---caatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : gCCACTTGAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACTGTGTTGAATACTTTAA-T--------A--------CATGTTTCCCATT-----------------GTAGAAATATTGATGAAACAATTAAAGTAACATA--TTATTGGCTGATCATGAATGTT-T-G-A-TAA--TTAAGGTACAAACAAGCACGCATTATAAT--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATATA-----TA-AATATG-AAT-ACGAATGTTTCTG-GTC-TTAGT---TACAGCTCAATACAA-------AATAATAATAGTCCAATACTATCACAAACTAATTACAAAC-----AA-------A-T--------AC-----CAT--CA---------TAAGTATATGATTGTC---AC-ATCTACT---AAT--TGGTG-------------TG--AAACAC-TATAAAG----TTTATGCTT--TA----ATC--T-----ATGTGTGGTACCAAAT-CTC-T-CAATTTG-GTACAAAATT-GTA-GTGGTAC--------AAAA---CCTC---TG-----TAATT-aaaactttactgtgttgaatactttaatacatgtttcccattgtagaaatattgatgaaacaattaaagtaacatattattggctgatcatgaatgtttgataattaaggtacaaacaagcacgcattataattttaattataaagacattacactatataattccttggttaatatatataaatatgaatacgaatgtttctggtcttagttacagctcaatacaaaataataatagtccaatactatcacaaactaattacaaacaaataccatcataagtatatgattgtcacatctactaattggtgtgaaacactataaagtttatgctttaatctatgtgtggtaccaaatctctcaatttggtacaaaattgtagtggtacaaaacctctgtaatt
gi|6 : ggaggtgtcgtaccactacagtttcgtactggatggtttcgtaA---CCTCAGCTG-----AAATT-GAATTCAGGTCCGTTAACAATATCTGGGATAAAACT-----TAAAGCTATCTGTTCTTGCATAAGGAACAACAAATGAAGAT-T--C-TAACCTACC----AGGACCTTGCCTGTCAGGATGGATCTAGCCCGTTGATATAAAT-TTAGATCTACCATTTTAACCTTT---GTAGAAG---AGGATTAAC--C--AAGCTTTTTTTCTACATTACTTCAAGGGTTTCCAAGCTAATTTAGACAGT-C-TTTGTCATACCAC----CTGGTTCAAAATT
gi|7 : ctagttttacaggtatttttctgtacaatagtggcatgtgagcaccaagcacatccagaaacctacttacaacctctaactgctgaagcaaagctagccacagaatcagtggctatatttgtttggaaatgG-GCACAAAATCAGTG-GTGGCATTTGCTTTGGAAATGACCTCAGCTG-----CAATT-GAATTCCAGTCCCTTA-CAGTGTTTGGGATAAAACTAAAACTAAAACTGTCTGTTCTTGCATAAGGAACAACAAACAAAGAT-TC-A-T-TCCTACC----ATGACCTTGCCTACCAGTA-GGAAACAACTCATTGATAGGAATATAAACCCTACCACTTTGATCTCT---TTAGAAG---AGAATTTACCAT--GC
gi|8 : tgatcttgattattttaagtgcatttgacatgtgagctccgtgtatattcagaaacctacttacaacctctaacagctgaagccaggctaATTTCTCG------TTAATATA-A-----TA-AATATATAATGAA-AGTAT----GTCTCAC-AGC---TACATTTTAA--CCATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----AA-------G-T--------TT-----A----TAAGTATATGAT--------------TGAGAC-ACCTACT---AAT--TGGTG-------------TG--AAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----TTTTGTGGTACGAAAC-CTC-T-CAATTTT-ATACGAAATT-GTA-ATGGTAC--------GAAA---CCTG---TGC----CAATT-CAAttttt
gi|9 : A---CCTCAGATG-----GAATT-TAATTCCAACCCCTTA-AAGTGTTTGGAATAAAACTAAACTTGAAACTATCTGTTCTTGCATAAGGAACAACAAATGAA-AT-TCCA-T-TCCTACC----ACGACCTTGCCTTACAGGA-GATACTAGCTCATTGAAGGGAATGTTAGCCCTACCATTCTAACCTTT---GTAGAAG---AGAATCAAC--C--GTGTTTCTTCTATAaaccggatactctacgataccatttatcttttaatagaagaactatttaagacaattatgtaactatttattatagtc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAGTTTTTCGGATGATCTTGATTATTTAAAGTACAACGTCATATGGCAGGTGAGAACCATGCTCTTTCAGATATCTAGTTACAGCCTCTAACAGATGAAGCAAAGTTGACCACAGAATCGGTTGCTGCATTTCCTTATGGAAAAGACCAGAGCTGGAATTGAATTCTAA
Unaligned ( gi|18 ): TTGATCTTGATTATTTATGCAATATTTAGCACAATGAACATCTAAAAACCTACTAACAACTTCTAGCAGCTGCAGTAAAGCTAGTAACAGAATCAAGCTGGCATTCGCTTTAAAAATGA
Unaligned ( gi|20 ): TGATAACCTCATGGTATAGCAGTTTTTTACGAACCCATAAACATAAACCATCAATATCTTCCAGTAACCTGTTTCTATCCTCTTCACCATTTATAGACCTGTAACAACCACAGTCGT
Unaligned ( gi|22 ): CTTGATCTTGACTTTAAAGTGCAATATCATTTAACATAAGAGCACCACACACATCCAGAAACCTAGCTGTAACAGCTGAAGCAAAGCTAGCCACAAACCATT
Unaligned ( gi|24 ): CTAACCGCTGAAGCAAAACTAGCAACTGATTAACTAGCTACAGAATCAGTGGCTGCATTCGTTTTGAAAATGACCTCAGCTGGAATTGAATTCA
Unaligned ( gi|29 ): CCTGATCTTGATTATTAAAGTGCAGTGTCACTACTCACATCTAGAAACCTGCTTACAACCTGTAACAGCTGAAGTA
Unaligned ( gi|30 ): TTGATCTTGATTAAAGTGTAACGTCATTTGACATATAAGCTCTATGCACATTTAGAAACCTATCAACAACTTGT
Unaligned ( gi|32 ): GTACACCTAGAAACCCACTTACAACCTTCTAACAGCTGTTCAAAGCAAAGCTAGCCACACTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 111111 22222222222222222 2222222222 111111 222 1 1111 2222222 1 11 1 1 33333333 1 2222 444444 3333333333 1 333333333333333333 333333333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111 111111111 11111111111 1111 1111 111 333 33333 1 2222 44444 33 22 1 1 22222 222222 7777777777777777 1 4444444444 1 11 3333 7777777777777777777777 3333 33 11 11
lowQualScore : 1 0 66 1111111 99999 555 000000 3 55 555 99999 4 33333333333333333 9999999999 2 6 999999 6 000 99 2 6 4444 1 9999999 8 1 5 77 5 5 55555555 5 1 4444 0 000000 8888888888 7 7 6 3 666666666666666666 8 111111111 11 7 1 3 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 0 7777 99999999 22222222 1 999999999 22 2 2 2 99999999 333 55555555555 22 6 1 6 5 9999 5 2222 8 888 22 1 3 444 111 11111 3 1 1 3 5 0 1 1111 0 44444 11 55 1 3 2 1 0 0 6 6 0 55555 44 888888 4444444444444444 1 3 7 9999999999 6 2 1 88 0 6 4444 1 1 0000000000000000000000 0 7777 6 33 88 44
lowQualScore : . . .. ....... ..... ... ...... . .. ... ..... . ................. .......... . . ...... . ... .. . . .... . ....... . . . .. . . ........ . . .... . ...... .......... . . . . .................. . ......... .. . . . ......................................................................................................... . . .... ........ ........ . ......... .. . . . ........ ... ........... .. . . . . .... . .... . ... .. . . ... ... ..... . . . . . . . .... . ..... .. .. . . . . . . . . . ..... .. ...... ................ . . . .......... . . . .. . . .... . . ...................... . .... . .. .. ..
lowQualScore : 0 2 99 8888888 11111 222 555555 6 11 888 11111 4 22222222222222222 2222222222 5 3 222222 7 000 22 0 7 2222 0 8888888 2 0 5 55 0 5 00000000 5 0 0000 7 000000 0000000000 3 3 7 3 777777777777777777 8 888888888 55 0 2 8 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 9 1111 66666666 33333333 4 111111111 11 0 1 1 77777777 555 22222222222 66 7 7 6 7 4444 7 1111 9 888 00 0 2 000 444 55555 2 0 0 2 5 2 2 2222 2 33333 77 33 0 3 0 0 7 7 5 5 8 00000 22 888888 6666666666666666 0 3 3 7777777777 7 0 0 33 7 7 7777 0 0 7777777777777777777777 7 7777 7 33 33 00
consensus : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNAT-T-A-A-AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACAGCTCAATACAATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------NA-T--------TT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-TTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
Reference ( family-1972 ) : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNAT-T-A-A-AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACAGCTCAATACAATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------NA-T--------TT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-CTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
gi|1 : CCACTTAAGGAGGATTCATAC--CCTA-------TATCA-----AATATATA--ATG------TT-TAAAACTTTACT---TTG-----TTTAT-T--------A--------CATGTGTCCCCTTGTGAAAAATCGTTTGCTGAACATGTCTAGG------AATTAGA-T-----A--ATAT-GA-TGA----AAATAAT-TTA-A-AAAAATTGAATTATAA-CAA--ATG-ATTA-AATGTATACGATTCAATTA-AAAGATCT----CTATATAAGTCCTTGTTATGGTTCAAATA-AGCACGCACAAT-TATAATGAC-AGTGT----GCTCAATTAGTAGACACA-CTCAA-ACATTATTAGTATCAATAATAATCCAGTACTATCACACACTAATTACAAAC-----A--------A-T--------TT-----C----CA---------T--------------C---ACATTTATTT--GAT--TG----------------T--GAAACAC-TATGAAG----TTTATGCAT--TA----ATC--T-----ATGTGCAGTACGAAAC-TTC-T-CAATTTG-GTACAAAATT-GTA-GTGGTAC--------GAAA---CTTC---TG-----TAACT-CAGTTCCAGTCCCTGG-CAGTATTAGGCATAAAACTAAACTTGAAACTATCTGTTCTTGCATTTGGAACAATAACTTAAAAT-T--ATT-TCCTACT----AAGACCTTGCCTATCAAGA-GGAACTAGCTCATTGATAGGTATGTTAGGGCTATCATTTTGACCTTTCAAGTGAAAAATTAGAATTAATTGCATGTGATTCTTTTCTATGTTGCTTCAAGGATTTCCAGTCTAATTTAGACAGTATATTCATCATACAAC----CTTGTTCGTAATTGTAGTAAGTCTGATGTAACAAACCTAGCTGCTCTA--TTTAATACCTTGTAAAAAGTC-TCATGGAAACCTACATAGTAAGAATCCAAGACAGAACTAAGCATACTCTAAAACTG-----GCCTAAGTAAATCCATGTATGCTGTT------TCTTTG------------CCAAAGTTTT-TCCTTAGAACAT----CT----AAAGTCCTGTTTACCTTTAAACGTAC--ATTACTTATTTGGGTTTTCCATTTAAGATCATTGGTAATGGTCACCCCCAAGTATTTGAC---AT-----T-TTCCAGA--GGTGTGCCTTCGAGTGTATA---AGAAGGAACAGAACACTTCATCTTT--CTAGATAACCTCA-CAGTATTACA
gi|10 : A---------T--------------T---ACATCTGATC---ATGGTG----------------T--GAAACAC-TATTGAG----TTTATGCAT--TA----ATG--T-----ACGAGTTGTACGAAAA-CTC-T-CTATTTG-GTACGAAATT-GTA-GTAGTAC--------GAAA---GCTC---TG-----TAATT-Cataattaattctt
gi|11 : ataAATTACAAAC-----ATCATAATTA-T--------TT-----TAGTGCA----------------------------ACACTTAATC---AT--TG----------------TGCGAAACAC-GATAAAA----TGTATGCAA--TA----ATC--T-----ATGTGTGGTATG----------------TG-GTACGAAAGT-GTA-GTGGTACG-------GAAA---ACTC---TG-----TAATT-CAATACCAtttatttcaagggaattcacgacttagctgaaacagaaatagacagaggaacttttggaaataaatgtattattaaacctaggttgtatttttgttcaaattacatagtggtttgttacatttagtatgattacaacgtt
gi|12 : agtaTGGTACGAAAC-CAC-C-C-----G-GTACGAAATT-TAA-GTGGTAC--------GAAA---CCTC---tacataagactgtccaggttgtgtcaacttgtattgatttaaatgattgaaagagtgtcactagtttgacctgtatttactcataataagtaactaattta
gi|12 : aaatgttcccgtttagaaatggttgttgCCATTTGAGAAGGTTTCGTAC--CGTA-------TATTA-----AATATATA--GTG------AT-TAAATTTTTACT---TTG-----TTTAA-TACTTTAACA--------CATGTTTCCTATT---------GACTTCCTGTACATGGAGAGA------AATTAGA-T---ATA--A-AT-GA-TGA----AAATAA----A-AGAAACATAGAGtttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaataaaagaaacatagagtgtttaaaactttattttgtat
gi|12 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaATA-------AAAGA-----AACATAGA--GTG------TT-TAAAACTTTATT---TTG-----Ttgtttaaaactttattttgtat
gi|13 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaccatttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaTATACAT--T------TC--------ATATATGGTACAAAAC-CTC-C-TGAAATG-GTACGAAACC-AC--CCGGTAC--------GAAA---CCTC---CA-----AAACC-CAATat
gi|13 : tctgCCATTTCAGGAGGTTTTGTAC--CATA-------TATGA-----AATGTATA--GTGATATTTTT-TAAA----TACA---T----------AACT--------A--------CATGTTTCCTATT---------CATTTCATGTAATCGTATAGA------ACTTAGA-T--CATA--ATATCGA-TAT----AAATTAT-----G-AAAGATgtgatattttttaaatacataactacatgtttcctattcatttcatgtaatcgtatagaacttagatcataatatcgatataaattatgaaagatatgtttaaga
gi|15 : tctgattgggttttggaggtttcgtaccgggtggtttcgtaACTGTCACAAACTAACTATATAC-----A-------TAAT--------GTAAATAC----CA---------T--------------C---ATAGTTATTT--GAT--TGACACTTTAGAATCATGT--GAAACAC-AAAAAAG----TTTACACAT--GA----AT-----------GTGAGAAAAAAAA---------AATT-G-GTACAGAATT-GAA-TTGATAC--------AAAA---CCTA---T--------ATT-AAATTCatgtttaaga
gi|16 : -----C----TA---------T--------------C---ACACCTAAACAAGGT--TG-------------------GAAATAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACAAAGTT-GCA-GTGTTAC--------AAata
gi|17 : agaatcacaaataatgacttcttaaaagatgaactgaataacccaaataacaatatgaCT---TTG-----TTTAA-T--------AATGTAATACAAGTTTCCTATT---------CATTTCCTGAACATGGATAGA------AATTTGA-T--AATGATATATTGA-TAT----AAATGAT-G-G-A-AA
gi|17 : ATA--------ATGC-----AATATATT--GTG------TT-TAGAACCTTAAT---TTG-----TTTtaatgcaatatattgtgtttagaaccttaatttgtttttactttta
gi|19 : ctttgtttaataatgtaatacaagtttcctattcatttcctgaacatggatagaaatttgataatgatatattgatataaatgatggaaC---TG-----AAATT-GAATTCCAGTCCCTTA-CAGTGTCTGAGATAAAACTGAACTTAAAACTATCTATTCTTGCACAAGGAATAACAAATGCATAC-TA-A-T-TCCTACC----ACGATCTTGCTTATttactttta
gi|2 : tcagC---TG-----GAATT-GAATTCCAGTCCTTTA-CAGTGTCTGAGATAAAACTAAACTTGAAACTATCTATTCTTGCACAAGGAACAACACATGAATAC-T--A-T-TCCTACCTACCATGATCTTGCCTATCAG-----------------------AATGTTAGCCCTACCATTTCGACCTTT---GTAGAAGA--A-AATTTACCGT--GC--TTCTTTTCTACGTTGATTAAAAGGTTTCCAATCTAATTTTGACAGCAC----GTCATACTACAAAACAGGTTTATAATTG---T-AGTCTGACGTAACAAACCTAGCTACTCTAGTTTTA--ACCTTTTCCAAA-TCATCCTAGAGACCGACACAATGAGGATCTCAGACGGATCCA-GCGTACTCAAAGACTGAAGTCGCTTAACTAAACCCATATATGCTGTTCTTTGGCCTTTGTGGCACACGACCCC--ATTGTTCTCATTAGAACAT---CTTTATCACGGTCCTATTTGTCTTAGAACTTACATATTACTTCTGTTGGTATTACATTCAA---CG-C-ATAATGGTCATCACTAAGTATCTGACATAATTAACATCCTCC--ATCAGTGTGCCTTCGAGTGTAT---GAAAAG--ACAGAACTCTTCTTCTTT--CTAGATAACCTCAGTGGTATTTCA
gi|21 : gatctcagTCAGGAGGTTTTGTAC--TACA-------TATGATATATGATATATATTATG------TTGTAA------GCT---TTG-----TTGAA-T--------A--------Ctttctttctatgcccactttacgagcacatacacgtagactatcaatatcttcttgcaacatgtttccatcct
gi|23 : accattataatttcgtattgtgctgtttaatacaatttaAAACAA-TATATAT----TTCATACCC--T-------C--T-----TTATGTTGTATGAAAC-C-------ATGTG-GTACGAAATT-GTA-GAGGTAC--------GAAA---
gi|23 : GGTTTCATACAACATAAAGAGGGTATGA-----AATATATA--TTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTaaaactttactttgtttaatacatgt
gi|25 : tttcgtacctctacaatttcgtaccacatTGGTATGAAAC--------AACCCG-GTACAAAATT-ATA-GTGGTAT--------GAAA---C
gi|25 : tggcaCCATTTGAGGAGGTTT-------------------ATGA-----AATGTATA--GTG------AT-TAAATATTTACT---TTtttgaggaggtttatgaaatgtatagtgattaaatatttacttt
gi|26 : tggcagtttcataccactataattttgtaccgggttgtttcataAAACTATCTGTTATTGCACAAGGAACAGCAAATGAAGATAC--A-T-TCATACT----A----CTTGCCTA
gi|27 : caagttACAAAAC-CTC-T-CAATCTG-GAAC-AAATT-ATA-GTGGTAC--------AAAA---TCTG---TG-----TAATT-Cgtctaaatgagtatggcacatt
gi|28 : GGTACGAGAC-CTCCT-TAAGT-G-GTATGAAATT-GTA-GTGGTAT--------GAAA---Ccccaataacagctgaatccctgtaatacca
gi|3 : attatgtaatggttataatggttgttggttTTAAC-----GCGCTTCTTTTCTACGTTGCTTCAAGGACTTCCAAGTTAATTTTGACAGTACATTCGTCACACTAC----CTAGTTCATAGTTGC-G---GTCTGACGTAGCATATATAGCTGCTCTAT-TTTGG-ACCTTTTTCAAA-TCGTCCTTGAGACCTACGCAACGATGATCCAAGAAGGAACTAGAT-TACTCTAAAACTG-----ACCTAACTAAAGCCATGTATGCTGTT------TCTTTG-----------------GTCTT-TGC--GGGACATGACCCC----AAA----TGTCT-CCTTTGAATATGC--ATTACTTATGCGGGTATTCAAGTTAAGATCACCTGTAATGGTCAATACTAAGTATGTAACAGAATTAGCAT-T------------CGCCTTCGGATGTATAAGAAGAAGGAACAGAG------ATTTTTCCCCAGATAACTTCA-TGTTATAACA
gi|31 : atTG-GTACGAAACC-ACC--TGGTAC--------GAAA---CCTC---CAACAACCGATT-CAACTCtttctttggccgaaatatcacgccccatttaacgaaccaaaacactttaactatcaatactattcttgcaacctatttctatcctcttggccttttattgacctatatcaaacacagtca
gi|31 : tgttttgaaTGGTACGAAAC-C-------ACCTG-GTACGAAAtttcaggagggt
gi|33 : tgttttgaagagttgaatcggttgttggaggGGCGTACTCTACCGTTG-----GTCTAACTAA-GCCATGTATGCTGTT------TCTTTG------------tttcaggagggt
gi|4 : gaggcagct--GAA--TG----------------G--GAAACATGTATAAAAAAAATAAATACAT--T------TC--------ATATATGGTACGAAACTTTC-T-GAA-ATG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CTTC---attt
gi|4 : atacaaatgtcgatcaatggttgttggCCATTTCAGAAAGTTTCGTAC--CATA-------TATGA-----AATGTAT----------------------TTATT---TTT-----TTTA--T--------A--------CATGTTTCCCATT---------CATTCCATGTACAAGTATAGA------AATTAGA-T--CATA--ATATCGG-TAA----AAATTATGT-ATG-AAAGATattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaATG-------TATGA-----AAGATAAT--GTG------TT-TAAAACTTTATT---TTG-----TTTAA-T--------A--------CAaatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattGCTCAATTTAAAG--AACAA-AATAATAAACCATCACT--CACACACTCATTACAAACAAAAAA-------CA-TAATAAGAGTG-----T----GA---------TAG------------CG--ACTCCTTATA--G----TG----------------T--GAAATAC-TATATAG----TTTATGAAT--GA----ATCCTT-----AT-CATAGTGTGAAATACTA-TATAGTTTATGAATGAATCT-ATGTGTGGTAC--------GAAA---CCTC-----------AATT-aacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtat--TG----------------T--GAAATAC-TATATAG----TTTATGAAT--GA----ATC--T-----ATGTGTGGTACGAAAC---C-T-CAATTTG-GTATAAAATT-GTA-ATGGTAC--------GAAA---CCTC---TG-----TAATTCCAATtggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagAAACAC-TATATAT----TTCATATATGGTACGAAACC--TCCTCAA---GTGGTACGAAAC-C-------ATCCA-GTACGAAACT-GTA-GTGGTAC--------GACA---CCTC---caatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : gCCACTTGAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACTGTGTTGAATACTTTAA-T--------A--------CATGTTTCCCATT-----------------GTAGAAATATTGATGAAACAATTAAAGTAACATA--TTATTGGCTGATCATGAATGTT-T-G-A-TAA--TTAAGGTACAAACAAGCACGCATTATAAT--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATATA-----TA-AATATG-AAT-ACGAATGTTTCTG-GTC-TTAGT---TACAGCTCAATACAA-------AATAATAATAGTCCAATACTATCACAAACTAATTACAAAC-----A-------AA-T--------AC-----CAT--CA---------TAAGTATATGATTGTC---ACATCTACT---AAT--TGGTG-------------T--GAAACAC-TATAAAG----TTTATGCTT--TA----ATC--T-----ATGTGTGGTACCAAAT-CTC-T-CAATTTG-GTACAAAATT-GTA-GTGGTAC--------AAAA---CCTC---TG-----TAATT-aaaactttactgtgttgaatactttaatacatgtttcccattgtagaaatattgatgaaacaattaaagtaacatattattggctgatcatgaatgtttgataattaaggtacaaacaagcacgcattataattttaattataaagacattacactatataattccttggttaatatatataaatatgaatacgaatgtttctggtcttagttacagctcaatacaaaataataatagtccaatactatcacaaactaattacaaacaaataccatcataagtatatgattgtcacatctactaattggtgtgaaacactataaagtttatgctttaatctatgtgtggtaccaaatctctcaatttggtacaaaattgtagtggtacaaaacctctgtaatt
gi|6 : ggaggtgtcgtaccactacagtttcgtactggatggtttcgtaA---CCTCAGCTG-----AAATT-GAATTCAGGTCCGTTAACAATATCTGGGATAAAACT-----TAAAGCTATCTGTTCTTGCATAAGGAACAACAAATGAAGAT-T--C-TAACCTACC----AGGACCTTGCCTGTCAGGATGGATCTAGCCCGTTGATATAAAT-TTAGATCTACCATTTTAACCTTT---GTAGAAG---AGGATTAAC--C--AAGCTTTTTTTCTACATTACTTCAAGGGTTTCCAAGCTAATTTAGACAGT-C-TTTGTCATACCAC----CTGGTTCAAAATT
gi|7 : ctagttttacaggtatttttctgtacaatagtggcatgtgagcaccaagcacatccagaaacctacttacaacctctaactgctgaagcaaagctagccacagaatcagtggctatatttgtttggaaatgG-GCACAAAATCAGTG-GTGGCATTTGCTTTGGAAATGACCTCAGCTG-----CAATT-GAATTCCAGTCCCTTA-CAGTGTTTGGGATAAAACTAAAACTAAAACTGTCTGTTCTTGCATAAGGAACAACAAACAAAGAT-TC-A-T-TCCTACC----ATGACCTTGCCTACCAGTA-GGAAACAACTCATTGATAGGAATATAAACCCTACCACTTTGATCTCT---TTAGAAG---AGAATTTACCAT--GC
gi|8 : tgatcttgattattttaagtgcatttgacatgtgagctccgtgtatattcagaaacctacttacaacctctaacagctgaagccaggctaATTTCTCG------TTAATATA-A-----TA-AATATATAATGAA-AGTAT----GTCTCAC-AGC---TACATTTTAA--CCATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------AG-T--------TT-----A----TAAGTATATGAT--------------TGAGACACCTACT---AAT--TGGTG-------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----TTTTGTGGTACGAAAC-CTC-T-CAATTTT-ATACGAAATT-GTA-ATGGTAC--------GAAA---CCTG---TGC----CAATT-CAAttttt
gi|9 : A---CCTCAGATG-----GAATT-TAATTCCAACCCCTTA-AAGTGTTTGGAATAAAACTAAACTTGAAACTATCTGTTCTTGCATAAGGAACAACAAATGAA-AT-TCCA-T-TCCTACC----ACGACCTTGCCTTACAGGA-GATACTAGCTCATTGAAGGGAATGTTAGCCCTACCATTCTAACCTTT---GTAGAAG---AGAATCAAC--C--GTGTTTCTTCTATAaaccggatactctacgataccatttatcttttaatagaagaactatttaagacaattatgtaactatttattatagtc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAGTTTTTCGGATGATCTTGATTATTTAAAGTACAACGTCATATGGCAGGTGAGAACCATGCTCTTTCAGATATCTAGTTACAGCCTCTAACAGATGAAGCAAAGTTGACCACAGAATCGGTTGCTGCATTTCCTTATGGAAAAGACCAGAGCTGGAATTGAATTCTAA
Unaligned ( gi|18 ): TTGATCTTGATTATTTATGCAATATTTAGCACAATGAACATCTAAAAACCTACTAACAACTTCTAGCAGCTGCAGTAAAGCTAGTAACAGAATCAAGCTGGCATTCGCTTTAAAAATGA
Unaligned ( gi|20 ): TGATAACCTCATGGTATAGCAGTTTTTTACGAACCCATAAACATAAACCATCAATATCTTCCAGTAACCTGTTTCTATCCTCTTCACCATTTATAGACCTGTAACAACCACAGTCGT
Unaligned ( gi|22 ): CTTGATCTTGACTTTAAAGTGCAATATCATTTAACATAAGAGCACCACACACATCCAGAAACCTAGCTGTAACAGCTGAAGCAAAGCTAGCCACAAACCATT
Unaligned ( gi|24 ): CTAACCGCTGAAGCAAAACTAGCAACTGATTAACTAGCTACAGAATCAGTGGCTGCATTCGTTTTGAAAATGACCTCAGCTGGAATTGAATTCA
Unaligned ( gi|29 ): CCTGATCTTGATTATTAAAGTGCAGTGTCACTACTCACATCTAGAAACCTGCTTACAACCTGTAACAGCTGAAGTA
Unaligned ( gi|30 ): TTGATCTTGATTAAAGTGTAACGTCATTTGACATATAAGCTCTATGCACATTTAGAAACCTATCAACAACTTGT
Unaligned ( gi|32 ): GTACACCTAGAAACCCACTTACAACCTTCTAACAGCTGTTCAAAGCAAAGCTAGCCACACTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 111111 22222222222222222 2222222222 111111 222 1 1111 2222222 1 11 1 1 33333333 1 2222 444444 3333333333 1 333333333333333333 333333333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111 111111111 11111111111 1111 1111 111 333 33333 1 2222 44444 33 22 1 1 22222 222222 7777777777777777 1 4444444444 1 11 3333 6666666666666666666666 3333 33 11 11
lowQualScore : 1 0 66 1111111 99999 555 000000 3 55 555 99999 4 33333333333333333 9999999999 2 6 999999 6 000 99 2 6 4444 1 9999999 8 1 5 77 5 5 55555555 5 1 4444 0 000000 8888888888 7 7 6 3 666666666666666666 8 111111111 11 7 1 3 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 0 7777 99999999 22222222 1 999999999 22 2 2 2 99999999 333 55555555555 22 6 1 6 5 9999 5 2222 8 888 22 1 3 444 111 11111 3 1 1 3 5 0 1 1111 0 44444 11 55 1 3 2 1 0 0 6 6 0 55555 44 888888 4444444444444444 1 3 7 9999999999 6 2 1 88 0 6 4444 1 1 6666666666666666666666 0 7777 6 33 88 44
lowQualScore : . . .. ....... ..... ... ...... . .. ... ..... . ................. .......... . . ...... . ... .. . . .... . ....... . . . .. . . ........ . . .... . ...... .......... . . . . .................. . ......... .. . . . ......................................................................................................... . . .... ........ ........ . ......... .. . . . ........ ... ........... .. . . . . .... . .... . ... .. . . ... ... ..... . . . . . . . .... . ..... .. .. . . . . . . . . . ..... .. ...... ................ . . . .......... . . . .. . . .... . . ...................... . .... . .. .. ..
lowQualScore : 0 2 99 8888888 11111 222 555555 6 11 888 11111 4 22222222222222222 2222222222 5 3 222222 7 000 22 0 7 2222 0 8888888 2 0 5 55 0 5 00000000 5 0 0000 7 000000 0000000000 3 3 7 3 777777777777777777 8 888888888 55 0 2 8 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 9 1111 66666666 33333333 4 111111111 11 0 1 1 77777777 555 22222222222 66 7 7 6 7 4444 7 1111 9 888 00 0 2 000 444 55555 2 0 0 2 5 2 2 2222 2 33333 77 33 0 3 0 0 7 7 5 5 8 00000 22 888888 6666666666666666 0 3 3 7777777777 7 0 0 33 7 7 7777 0 0 0000000000000000000000 7 7777 7 33 33 00
consensus : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNAT-T-A-A-AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACAGCTCAATACAATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------NA-T--------TT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-TTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
Reference ( family-1972 ) : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNAT-T-A-A-AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACAGCTCAATACAATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------NA-T--------TT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-TTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
gi|1 : CCACTTAAGGAGGATTCATAC--CCTA-------TATCA-----AATATATA--ATG------TT-TAAAACTTTACT---TTG-----TTTAT-T--------A--------CATGTGTCCCCTTGTGAAAAATCGTTTGCTGAACATGTCTAGG------AATTAGA-T-----A--ATAT-GA-TGA----AAATAAT-TTA-A-AAAAATTGAATTATAA-CAA--ATG-ATTA-AATGTATACGATTCAATTA-AAAGATCT----CTATATAAGTCCTTGTTATGGTTCAAATA-AGCACGCACAAT-TATAATGAC-AGTGT----GCTCAATTAGTAGACACA-CTCAA-ACATTATTAGTATCAATAATAATCCAGTACTATCACACACTAATTACAAAC-----A--------A-T--------TT-----C----CA---------T--------------C---ACATTTATTT--GAT--TG----------------T--GAAACAC-TATGAAG----TTTATGCAT--TA----ATC--T-----ATGTGCAGTACGAAAC-TTC-T-CAATTTG-GTACAAAATT-GTA-GTGGTAC--------GAAA---CTTC---TG-----TAACT-CAGTTCCAGTCCCTGG-CAGTATTAGGCATAAAACTAAACTTGAAACTATCTGTTCTTGCATTTGGAACAATAACTTAAAAT-T--ATT-TCCTACT----AAGACCTTGCCTATCAAGA-GGAACTAGCTCATTGATAGGTATGTTAGGGCTATCATTTTGACCTTTCAAGTGAAAAATTAGAATTAATTGCATGTGATTCTTTTCTATGTTGCTTCAAGGATTTCCAGTCTAATTTAGACAGTATATTCATCATACAAC----CTTGTTCGTAATTGTAGTAAGTCTGATGTAACAAACCTAGCTGCTCTA--TTTAATACCTTGTAAAAAGTC-TCATGGAAACCTACATAGTAAGAATCCAAGACAGAACTAAGCATACTCTAAAACTG-----GCCTAAGTAAATCCATGTATGCTGTT------TCTTTG------------CCAAAGTTTT-TCCTTAGAACAT----CT----AAAGTCCTGTTTACCTTTAAACGTAC--ATTACTTATTTGGGTTTTCCATTTAAGATCATTGGTAATGGTCACCCCCAAGTATTTGAC---AT-----T-TTCCAGA--GGTGTGCCTTCGAGTGTATA---AGAAGGAACAGAACACTTCATCTTT--CTAGATAACCTCA-CAGTATTACA
gi|10 : A---------T--------------T---ACATCTGATC---ATGGTG----------------T--GAAACAC-TATTGAG----TTTATGCAT--TA----ATG--T-----ACGAGTTGTACGAAAA-CTC-T-CTATTTG-GTACGAAATT-GTA-GTAGTAC--------GAAA---GCTC---TG-----TAATT-Cataattaattctt
gi|11 : ataAATTACAAAC-----ATCATAATTA-T--------TT-----TAGTGCA----------------------------ACACTTAATC---AT--TG----------------TGCGAAACAC-GATAAAA----TGTATGCAA--TA----ATC--T-----ATGTGTGGTATG----------------TG-GTACGAAAGT-GTA-GTGGTACG-------GAAA---ACTC---TG-----TAATT-CAATACCAtttatttcaagggaattcacgacttagctgaaacagaaatagacagaggaacttttggaaataaatgtattattaaacctaggttgtatttttgttcaaattacatagtggtttgttacatttagtatgattacaacgtt
gi|12 : agtaTGGTACGAAAC-CAC-C-C-----G-GTACGAAATT-TAA-GTGGTAC--------GAAA---CCTC---tacataagactgtccaggttgtgtcaacttgtattgatttaaatgattgaaagagtgtcactagtttgacctgtatttactcataataagtaactaattta
gi|12 : aaatgttcccgtttagaaatggttgttgCCATTTGAGAAGGTTTCGTAC--CGTA-------TATTA-----AATATATA--GTG------AT-TAAATTTTTACT---TTG-----TTTAA-TACTTTAACA--------CATGTTTCCTATT---------GACTTCCTGTACATGGAGAGA------AATTAGA-T---ATA--A-AT-GA-TGA----AAATAA----A-AGAAACATAGAGtttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaataaaagaaacatagagtgtttaaaactttattttgtat
gi|12 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaATA-------AAAGA-----AACATAGA--GTG------TT-TAAAACTTTATT---TTG-----Ttgtttaaaactttattttgtat
gi|13 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaccatttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaTATACAT--T------TC--------ATATATGGTACAAAAC-CTC-C-TGAAATG-GTACGAAACC-AC--CCGGTAC--------GAAA---CCTC---CA-----AAACC-CAATat
gi|13 : tctgCCATTTCAGGAGGTTTTGTAC--CATA-------TATGA-----AATGTATA--GTGATATTTTT-TAAA----TACA---T----------AACT--------A--------CATGTTTCCTATT---------CATTTCATGTAATCGTATAGA------ACTTAGA-T--CATA--ATATCGA-TAT----AAATTAT-----G-AAAGATgtgatattttttaaatacataactacatgtttcctattcatttcatgtaatcgtatagaacttagatcataatatcgatataaattatgaaagatatgtttaaga
gi|15 : tctgattgggttttggaggtttcgtaccgggtggtttcgtaACTGTCACAAACTAACTATATAC-----A-------TAAT--------GTAAATAC----CA---------T--------------C---ATAGTTATTT--GAT--TGACACTTTAGAATCATGT--GAAACAC-AAAAAAG----TTTACACAT--GA----AT-----------GTGAGAAAAAAAA---------AATT-G-GTACAGAATT-GAA-TTGATAC--------AAAA---CCTA---T--------ATT-AAATTCatgtttaaga
gi|16 : -----C----TA---------T--------------C---ACACCTAAACAAGGT--TG-------------------GAAATAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACAAAGTT-GCA-GTGTTAC--------AAata
gi|17 : agaatcacaaataatgacttcttaaaagatgaactgaataacccaaataacaatatgaCT---TTG-----TTTAA-T--------AATGTAATACAAGTTTCCTATT---------CATTTCCTGAACATGGATAGA------AATTTGA-T--AATGATATATTGA-TAT----AAATGAT-G-G-A-AA
gi|17 : ATA--------ATGC-----AATATATT--GTG------TT-TAGAACCTTAAT---TTG-----TTTtaatgcaatatattgtgtttagaaccttaatttgtttttactttta
gi|19 : ctttgtttaataatgtaatacaagtttcctattcatttcctgaacatggatagaaatttgataatgatatattgatataaatgatggaaC---TG-----AAATT-GAATTCCAGTCCCTTA-CAGTGTCTGAGATAAAACTGAACTTAAAACTATCTATTCTTGCACAAGGAATAACAAATGCATAC-TA-A-T-TCCTACC----ACGATCTTGCTTATttactttta
gi|2 : tcagC---TG-----GAATT-GAATTCCAGTCCTTTA-CAGTGTCTGAGATAAAACTAAACTTGAAACTATCTATTCTTGCACAAGGAACAACACATGAATAC-T--A-T-TCCTACCTACCATGATCTTGCCTATCAG-----------------------AATGTTAGCCCTACCATTTCGACCTTT---GTAGAAGA--A-AATTTACCGT--GC--TTCTTTTCTACGTTGATTAAAAGGTTTCCAATCTAATTTTGACAGCAC----GTCATACTACAAAACAGGTTTATAATTG---T-AGTCTGACGTAACAAACCTAGCTACTCTAGTTTTA--ACCTTTTCCAAA-TCATCCTAGAGACCGACACAATGAGGATCTCAGACGGATCCA-GCGTACTCAAAGACTGAAGTCGCTTAACTAAACCCATATATGCTGTTCTTTGGCCTTTGTGGCACACGACCCC--ATTGTTCTCATTAGAACAT---CTTTATCACGGTCCTATTTGTCTTAGAACTTACATATTACTTCTGTTGGTATTACATTCAA---CG-C-ATAATGGTCATCACTAAGTATCTGACATAATTAACATCCTCC--ATCAGTGTGCCTTCGAGTGTAT---GAAAAG--ACAGAACTCTTCTTCTTT--CTAGATAACCTCAGTGGTATTTCA
gi|21 : gatctcagTCAGGAGGTTTTGTAC--TACA-------TATGATATATGATATATATTATG------TTGTAA------GCT---TTG-----TTGAA-T--------A--------Ctttctttctatgcccactttacgagcacatacacgtagactatcaatatcttcttgcaacatgtttccatcct
gi|23 : accattataatttcgtattgtgctgtttaatacaatttaAAACAA-TATATAT----TTCATACCC--T-------C--T-----TTATGTTGTATGAAAC-C-------ATGTG-GTACGAAATT-GTA-GAGGTAC--------GAAA---
gi|23 : GGTTTCATACAACATAAAGAGGGTATGA-----AATATATA--TTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTaaaactttactttgtttaatacatgt
gi|25 : tttcgtacctctacaatttcgtaccacatTGGTATGAAAC--------AACCCG-GTACAAAATT-ATA-GTGGTAT--------GAAA---C
gi|25 : tggcaCCATTTGAGGAGGTTT-------------------ATGA-----AATGTATA--GTG------AT-TAAATATTTACT---TTtttgaggaggtttatgaaatgtatagtgattaaatatttacttt
gi|26 : tggcagtttcataccactataattttgtaccgggttgtttcataAAACTATCTGTTATTGCACAAGGAACAGCAAATGAAGATAC--A-T-TCATACT----A----CTTGCCTA
gi|27 : caagttACAAAAC-CTC-T-CAATCTG-GAAC-AAATT-ATA-GTGGTAC--------AAAA---TCTG---TG-----TAATT-Cgtctaaatgagtatggcacatt
gi|28 : GGTACGAGAC-CTCCT-TAAGT-G-GTATGAAATT-GTA-GTGGTAT--------GAAA---Ccccaataacagctgaatccctgtaatacca
gi|3 : attatgtaatggttataatggttgttggttTTAAC-----GCGCTTCTTTTCTACGTTGCTTCAAGGACTTCCAAGTTAATTTTGACAGTACATTCGTCACACTAC----CTAGTTCATAGTTGC-G---GTCTGACGTAGCATATATAGCTGCTCTAT-TTTGG-ACCTTTTTCAAA-TCGTCCTTGAGACCTACGCAACGATGATCCAAGAAGGAACTAGAT-TACTCTAAAACTG-----ACCTAACTAAAGCCATGTATGCTGTT------TCTTTG-----------------GTCTT-TGC--GGGACATGACCCC----AAA----TGTCT-CCTTTGAATATGC--ATTACTTATGCGGGTATTCAAGTTAAGATCACCTGTAATGGTCAATACTAAGTATGTAACAGAATTAGCAT-T------------CGCCTTCGGATGTATAAGAAGAAGGAACAGAG------ATTTTTCCCCAGATAACTTCA-TGTTATAACA
gi|31 : atTG-GTACGAAACC-ACC--TGGTAC--------GAAA---CCTC---CAACAACCGATT-CAACTCtttctttggccgaaatatcacgccccatttaacgaaccaaaacactttaactatcaatactattcttgcaacctatttctatcctcttggccttttattgacctatatcaaacacagtca
gi|31 : tgttttgaaTGGTACGAAAC-C-------ACCTG-GTACGAAAtttcaggagggt
gi|33 : tgttttgaagagttgaatcggttgttggaggGGCGTACTCTACCGTTG-----GTCTAACTAA-GCCATGTATGCTGTT------TCTTTG------------tttcaggagggt
gi|4 : gaggcagct--GAA--TG----------------G--GAAACATGTATAAAAAAAATAAATACAT--T------TC--------ATATATGGTACGAAACTTTC-T-GAA-ATG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CTTC---attt
gi|4 : atacaaatgtcgatcaatggttgttggCCATTTCAGAAAGTTTCGTAC--CATA-------TATGA-----AATGTAT----------------------TTATT---TTT-----TTTA--T--------A--------CATGTTTCCCATT---------CATTCCATGTACAAGTATAGA------AATTAGA-T--CATA--ATATCGG-TAA----AAATTATGT-ATG-AAAGATattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaATG-------TATGA-----AAGATAAT--GTG------TT-TAAAACTTTATT---TTG-----TTTAA-T--------A--------CAaatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattGCTCAATTTAAAG--AACAA-AATAATAAACCATCACT--CACACACTCATTACAAACAAAAAA-------CA-TAATAAGAGTG-----T----GA---------TAG------------CG--ACTCCTTATA--G----TG----------------T--GAAATAC-TATATAG----TTTATGAAT--GA----ATCCTT-----AT-CATAGTGTGAAATACTA-TATAGTTTATGAATGAATCT-ATGTGTGGTAC--------GAAA---CCTC-----------AATT-aacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|4 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtat--TG----------------T--GAAATAC-TATATAG----TTTATGAAT--GA----ATC--T-----ATGTGTGGTACGAAAC---C-T-CAATTTG-GTATAAAATT-GTA-ATGGTAC--------GAAA---CCTC---TG-----TAATTCCAATtggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaccatttcagaaagtttcgtaccatatatgaaatgtatttattttttttatacatgtttcccattcattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagAAACAC-TATATAT----TTCATATATGGTACGAAACC--TCCTCAA---GTGGTACGAAAC-C-------ATCCA-GTACGAAACT-GTA-GTGGTAC--------GACA---CCTC---caatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : gCCACTTGAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACTGTGTTGAATACTTTAA-T--------A--------CATGTTTCCCATT-----------------GTAGAAATATTGATGAAACAATTAAAGTAACATA--TTATTGGCTGATCATGAATGTT-T-G-A-TAA--TTAAGGTACAAACAAGCACGCATTATAAT--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATATA-----TA-AATATG-AAT-ACGAATGTTTCTG-GTC-TTAGT---TACAGCTCAATACAA-------AATAATAATAGTCCAATACTATCACAAACTAATTACAAAC-----A-------AA-T--------AC-----CAT--CA---------TAAGTATATGATTGTC---ACATCTACT---AAT--TGGTG-------------T--GAAACAC-TATAAAG----TTTATGCTT--TA----ATC--T-----ATGTGTGGTACCAAAT-CTC-T-CAATTTG-GTACAAAATT-GTA-GTGGTAC--------AAAA---CCTC---TG-----TAATT-aaaactttactgtgttgaatactttaatacatgtttcccattgtagaaatattgatgaaacaattaaagtaacatattattggctgatcatgaatgtttgataattaaggtacaaacaagcacgcattataattttaattataaagacattacactatataattccttggttaatatatataaatatgaatacgaatgtttctggtcttagttacagctcaatacaaaataataatagtccaatactatcacaaactaattacaaacaaataccatcataagtatatgattgtcacatctactaattggtgtgaaacactataaagtttatgctttaatctatgtgtggtaccaaatctctcaatttggtacaaaattgtagtggtacaaaacctctgtaatt
gi|6 : ggaggtgtcgtaccactacagtttcgtactggatggtttcgtaA---CCTCAGCTG-----AAATT-GAATTCAGGTCCGTTAACAATATCTGGGATAAAACT-----TAAAGCTATCTGTTCTTGCATAAGGAACAACAAATGAAGAT-T--C-TAACCTACC----AGGACCTTGCCTGTCAGGATGGATCTAGCCCGTTGATATAAAT-TTAGATCTACCATTTTAACCTTT---GTAGAAG---AGGATTAAC--C--AAGCTTTTTTTCTACATTACTTCAAGGGTTTCCAAGCTAATTTAGACAGT-C-TTTGTCATACCAC----CTGGTTCAAAATT
gi|7 : ctagttttacaggtatttttctgtacaatagtggcatgtgagcaccaagcacatccagaaacctacttacaacctctaactgctgaagcaaagctagccacagaatcagtggctatatttgtttggaaatgG-GCACAAAATCAGTG-GTGGCATTTGCTTTGGAAATGACCTCAGCTG-----CAATT-GAATTCCAGTCCCTTA-CAGTGTTTGGGATAAAACTAAAACTAAAACTGTCTGTTCTTGCATAAGGAACAACAAACAAAGAT-TC-A-T-TCCTACC----ATGACCTTGCCTACCAGTA-GGAAACAACTCATTGATAGGAATATAAACCCTACCACTTTGATCTCT---TTAGAAG---AGAATTTACCAT--GC
gi|8 : tgatcttgattattttaagtgcatttgacatgtgagctccgtgtatattcagaaacctacttacaacctctaacagctgaagccaggctaATTTCTCG------TTAATATA-A-----TA-AATATATAATGAA-AGTAT----GTCTCAC-AGC---TACATTTTAA--CCATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------AG-T--------TT-----A----TAAGTATATGAT--------------TGAGACACCTACT---AAT--TGGTG-------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----TTTTGTGGTACGAAAC-CTC-T-CAATTTT-ATACGAAATT-GTA-ATGGTAC--------GAAA---CCTG---TGC----CAATT-CAAttttt
gi|9 : A---CCTCAGATG-----GAATT-TAATTCCAACCCCTTA-AAGTGTTTGGAATAAAACTAAACTTGAAACTATCTGTTCTTGCATAAGGAACAACAAATGAA-AT-TCCA-T-TCCTACC----ACGACCTTGCCTTACAGGA-GATACTAGCTCATTGAAGGGAATGTTAGCCCTACCATTCTAACCTTT---GTAGAAG---AGAATCAAC--C--GTGTTTCTTCTATAaaccggatactctacgataccatttatcttttaatagaagaactatttaagacaattatgtaactatttattatagtc
blockSeqs : G AA AAGAGGG TATAT ATT ATATTT G TT GTG AATAC C ACTTTAACA G C T TGAAAC G AAC AT C C TCAT A GTATG C G A GC C T . T A TACA G TATA A T G G TTCTGGTCTTAGT G TTTAAAG AC T T G ATAATGTAAATACCATCATAGTTATTTGATTGACACTTTAGAATCATGT G AAAA GGTACGAA TCCTCA G ACTATATA TT T A T TTGCTTTG TGA CAACAACC CC A G T A CCA A TACC C GAT AT T G . A CGT C T T A A T AAAA CG GT G C . A A G G AAGTC AC CTTTGG TGGCACACGACCCC G C T CTTTATC G G T AT G ACCT T C ATAATTAACATCCTCCATCA AAGA G CT CC GT
blockSeqs : C . . . A . . AC . . . AATGTAATA C A C . . C . T . . T AAG G . ATA A . . . GTCTCACAGC G TACAA AT T A A AAATACCATCATAAGTATATGATTGTCACATCTACTAATTGGTGT . . TA CTT G CTCCTTA AA . . . G . AGCTGA C . A T . AA . . T TA AA T A . . CAT C G T A . T . T T . T . G T G G . AG . . C . . GACCCC . . A . . GC A G AGAATTAGCATT G . . . T
blockSeqs : C . . . A . . AC . . . A C C T . . A . C . . G GGA G T CCATA . . A A AAAAAACATAATAAGAGTGTGATAGCGACTCCTTATAGTGT . . TA T A TTTCTGA TT . . . . . AGCTGC C . A G . CA . . G GA TA A G . . C T G A . . C . . . . G .
blockSeqs : G . . . A . . AC . . . A C A A . . C . T . . T TGA . . AAGTTTATAAGTATATGATTGAGACACCTACTAATTGGTGT . . GA T G CTCTCT TT . . . . . AGATGG C . A G . A . . T . . . . . . C .
blockSeqs : C . . . T . . TA . . . A . . A . . . . . . . G G ATCATAATTATTTTAGTGCAACACTTAATCATTGTGC . . TA T G CTCCTG TG . . . . . TGCC A . . G . A . . C .
blockSeqs : G . . . A . . AC . . . A . . GA T A CTCTCA CC . . . . . TGT G . . C . . .
blockSeqs : . . . A . . AC . . . A . . GA T A CTCTCA TC . . . . . TGT G
blockSeqs : . . T . . . . . . A . . TA T G CTCTCA GT . . . . . CAA C
blockSeqs : . . A . . . . . . . TA T G CTCTCA CC . . . . . TGA C
blockSeqs : . . . . . . . . . . T . T CACCC TT . . . . . TGG G
blockSeqs : . . . T . . CTCA TT . . . . . TGT G
blockSeqs : T . . A TC . . . . . TGT C
blockSeqs : C TT . . . . . TGT T
blockSeqs : A TT . . . . . T
blockSeqs : C A . . . . . .
blockSeqs : C . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons : C********* C** NGA**** CA** *** *** CGT**
originalCons : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNAT-T-A-A-AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACAGCTCAATACAATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------NA-T--------TT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-T--A-T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAGA--AGAATTAACCGC--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-TTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
finalCons : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATTC---------ATTTCCTGTACACGTATAGA------AATTAGA-TC--ATA--ATATCGA-TGA----AAATNATNGA----AAAGATTGAGNTACAAACAAGCACGCATTATAATGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACAGCTCAATACAATA--AATAATAATAATAATCCAATACTATCACACACTAATTACAAAC-----A-------NA-T--------TT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATC--T-----ATGTGTGGTACGAAAC-CTC-T-CAATTTG-GTACGAAATT-GTA-GTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGAT-TCA--T-TCCTACC----ACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAG---AGAATTAACCGT--GCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-TTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAGTTTTTCGGATGATCTTGATTATTTAAAGTACAACGTCATATGGCAGGTGAGAACCATGCTCTTTCAGATATCTAGTTACAGCCTCTAACAGATGAAGCAAAGTTGACCACAGAATCGGTTGCTGCATTTCCTTATGGAAAAGACCAGAGCTGGAATTGAATTCTAA
Unaligned ( gi|18 ): TTGATCTTGATTATTTATGCAATATTTAGCACAATGAACATCTAAAAACCTACTAACAACTTCTAGCAGCTGCAGTAAAGCTAGTAACAGAATCAAGCTGGCATTCGCTTTAAAAATGA
Unaligned ( gi|20 ): TGATAACCTCATGGTATAGCAGTTTTTTACGAACCCATAAACATAAACCATCAATATCTTCCAGTAACCTGTTTCTATCCTCTTCACCATTTATAGACCTGTAACAACCACAGTCGT
Unaligned ( gi|22 ): CTTGATCTTGACTTTAAAGTGCAATATCATTTAACATAAGAGCACCACACACATCCAGAAACCTAGCTGTAACAGCTGAAGCAAAGCTAGCCACAAACCATT
Unaligned ( gi|24 ): CTAACCGCTGAAGCAAAACTAGCAACTGATTAACTAGCTACAGAATCAGTGGCTGCATTCGTTTTGAAAATGACCTCAGCTGGAATTGAATTCA
Unaligned ( gi|29 ): CCTGATCTTGATTATTAAAGTGCAGTGTCACTACTCACATCTAGAAACCTGCTTACAACCTGTAACAGCTGAAGTA
Unaligned ( gi|30 ): TTGATCTTGATTAAAGTGTAACGTCATTTGACATATAAGCTCTATGCACATTTAGAAACCTATCAACAACTTGT
Unaligned ( gi|32 ): GTACACCTAGAAACCCACTTACAACCTTCTAACAGCTGTTCAAAGCAAAGCTAGCCACACTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 11111 111111 11111 22222222222222222 2222222222 111111 333333333333333 1111 11111 1 1 22 1 11 444444444444 1 3333 33333333 2222222 1 11 44444444444444 111 22 1 555555555555 22222 2222 1 111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 11111111 11111111 111 111111 111 111 111 2222222 111 2222 333333 33 22 1 1 22222 222222 7777777777777777 1 4444444444 1 11 3333 6666666666666666666666 3333 33 11 11
lowQualScore : 1 0 66 33333333 00000 55 111111 4 77 666 00000 55 77777777777777777 9999999999 2 6 3 999999 111111111111111 6 4444 7 22222 0 2 44 0 7 11 0 2 44 888888888888 0 7 2 1 0000 7 6 44444444 9 6666666 0 22 3 6 11111111111111 3 7 777 22 5 000000000000 55555 1111 0 3 111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 7777 44 00000 999999 66666666 33 2 00000000 333 111 111111 22 6 1 1 000 1 8 888 22 1 3 444 444 8888888 1 1 999 1 1111 0 444444 11 55 1 3 2 1 0 0 6 6 0 55555 44 888888 4444444444444444 1 3 7 9999999999 6 2 1 88 0 6 4444 1 1 6666666666666666666666 0 7777 6 33 88 44
lowQualScore : . . .. ........ ..... .. ...... . .. ... ..... .. ................. .......... . . . ...... ............... . .... . ..... . . .. . . .. . . .. ............ . . . . .... . . ........ . ....... . .. . . .............. . . ... .. . ............ ..... .... . . ...... ........................................................................................... . .... .. ..... ...... ........ .. . ........ ... ... ...... .. . . . ... . . ... .. . . ... ... ....... . . ... . .... . ...... .. .. . . . . . . . . . ..... .. ...... ................ . . . .......... . . . .. . . .... . . ...................... . .... . .. .. ..
lowQualScore : 0 2 99 99999999 00000 55 555555 0 55 444 00000 44 22222222222222222 2222222222 5 3 2 222222 555555555555555 7 2222 5 88888 5 0 77 7 3 77 7 0 77 333333333333 7 3 3 0 3333 3 5 22222222 8 0000000 0 55 2 5 55555555555555 2 0 555 88 5 555555555555 00000 2222 0 2 888888 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 7777 66 33333 555555 44444444 22 2 33333333 777 777 333333 77 7 7 7 000 9 9 888 00 0 2 000 000 8888888 0 0 000 2 2222 2 333333 77 33 0 3 0 0 7 7 5 5 8 00000 22 888888 6666666666666666 0 3 3 7777777777 7 0 0 33 7 7 7777 0 0 0000000000000000000000 7 7777 7 33 33 00
consensus : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T---ATA--ATAT-GA-TGA----AAATGATN-GA-AAAAATTGANGTATAAACGA--ACGCGTTATAA---T-TAT-C-GTTTAATTACAAAGACGT-ACGCTATATAATTCCTCG-----GTTAATATA-A-----CA-AATATATAATGAC-AGTGT----GCNCCATTAGT---CACA-NCTCAATACAA-TA--AA-----TAATAA-----TAATAG----TCCA-ATACTATCACANACTA---A--TTACAAACA-------AA-TNT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATCT-----ATGTGTGGTACGAAAC-CTC-TCAATTTGGTACGAAATT-GTAGTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGA---TTCATTCCTACCACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAG---AGAATTAAC--CGTGCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-TTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
Reference ( family-1972 ) : CCATTTNAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTTTCCCATT---------CATTTCCTGTACACGTATAGA------AATTAGA-T--CATA--ATATCGA-TGA----AAATNATN-GA-AAAGATTGAGNTACAAACAAGCACGCATTATAA---TGTATACGATTCAATTATAAAGACNTTACACTATATAATTCCTCG-----GTTAATATA-A-----TA-AATATATAATGAC-AGTGT----GCNTCATTAGT---TACA-GCTCAATACAA-TA--AA-----TAATAA-----TAATAA----TCCA-ATACTATCACACACTA---A--TTACAAACA-------NA-TTT-----C----CA---------T--------------C---ACACCTANTC--GAT--TG----------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATCT-----ATGTGTGGTACGAAAC-CTC-TCAATTTGGTACGAAATT-GTAGTGGTAC--------GAAA---CCTC---TG-----NAATT-CAATTCCAGTCCCTTA-CAGTGTCTGGGATAAAACTAAACTTGAAACTATCTGTTCTTGCACAAGGAACAACAAATGAAGA---TTCATTCCTACCACGACCTTGCCTATCAGGA-GGAACTAGCTCATTGATAGGAATGTTAGCCCTACCATTTTGACCTTT---GTAGAAG---AGAATTAAC--CGTGCGCTTCTTTTCTACGTTGCTTCAAGGGTTTCCAANCTAATTTNGACAGTACATTCGTCATACTAC----CTGGTTCATAATTGC-GT-AGTCTGACGTAACAAACCTAGCTGCTCTA--TTTAG-ACCTTTTNCAAA-TCGTCCTNGAGACCTACGCAACGAGGATCCAAGACGGAACTAGGCGTACTCTAAAACTG-----GCCTAACTAAANCCATGTATGCTGTT------TCTTTG------------CC--AGTNTT-TCCTTAGAACAT---CCT----AAAGTCCTGTTTGCCTTTGAACNTAC--ATTACTTATGCGGGTATTCCATTTAAGATCGCC-GTAATGGTCANCACTAAGTATNTGACA-AATTAGCAT-TTCC--A--GGTGCGCCTTCGAGTGTATA--GAGAAGGAACAGAAC-CTTCATCTTT--CTAGATAACCTCA-CGGTATTACA
gi|1 : CCACTTAAGGAGGATTCATAC--CCTA-------TATCA-----AATATATA--ATG------TT-TAAAACTTTACT---TTG-----TTTAT-T--------A--------CATGTGTCCCCTTGTGAAAAATCGTTTGCTGAACATGTCTAGG------AATTAGA-T-----A--ATAT-GA-TGA----AAATAATTTAA-AAAAATTGAATTATAA-CAA--ATG-ATTA-AA---TGTATACGATTCAATTA-AAAGATCT----CTATATAAGTCCTTGTTATGGTTCAAATA-AGCACGCACAAT-TATAATGAC-AGTGT----GCTCAATTAGTAGACACA--CTCAA-ACAT-TATTAG-----TATCAA-----TAATAA----TCCA-GTACTATCACACACTA---A--TTACAAACA--------A-TTT-----C----CA---------T--------------C---ACATTTATTT--GAT--TG----------------T--GAAACAC-TATGAAG----TTTATGCAT--TA----ATCT-----ATGTGCAGTACGAAAC-TTC-TCAATTTGGTACAAAATT-GTAGTGGTAC--------GAAA---CTTC---TG-----TAACT-CAGTTCCAGTCCCTGG-CAGTATTAGGCATAAAACTAAACTTGAAACTATCTGTTCTTGCATTTGGAACAATAACTTAAAA---TTATTTCCTACTAAGACCTTGCCTATCAAGA-GGAACTAGCTCATTGATAGGTATGTTAGGGCTATCATTTTGACCTTTCAAGTGAAAAATTAGAATTAATTGCATGTGATTCTTTTCTATGTTGCTTCAAGGATTTCCAGTCTAATTTAGACAGTATATTCATCATACAAC----CTTGTTCGTAATTGTAGTAAGTCTGATGTAACAAACCTAGCTGCTCTA--TTTAATACCTTGTAAAAAGTC-TCATGGAAACCTACATAGTAAGAATCCAAGACAGAACTAAGCATACTCTAAAACTG-----GCCTAAGTAAATCCATGTATGCTGTT------TCTTTG------------CCAAAGTTTT-TCCTTAGAACAT----CT----AAAGTCCTGTTTACCTTTAAACGTAC--ATTACTTATTTGGGTTTTCCATTTAAGATCATTGGTAATGGTCACCCCCAAGTATTTGAC---AT-----T-TTCCAGA--GGTGTGCCTTCGAGTGTATA---AGAAGGAACAGAACACTTCATCTTT--CTAGATAACCTCA-CAGTATTACA
gi|10 : A---------T--------------T---ACATCTGATC---ATGGTG----------------T--GAAACAC-TATTGAG----TTTATGCAT--TA----ATGT-----ACGAGTTGTACGAAAA-CTC-TCTATTTGGTACGAAATT-GTAGTAGTAC--------GAAA---GCTC---TG-----TAATT-Cataattaattctt
gi|11 : ataA---A--TTACAAACATCATAATTA-TTT-----TAGTGCA----------------------------ACACTTAATC---AT--TG----------------TGCGAAACAC-GATAAAA----TGTATGCAA--TA----ATCT-----ATGTGTGGTATG---------------TGGTACGAAAGT-GTAGTGGTACG-------GAAA---ACTC---TG-----TAATT-CAATACCAtttatttcaagggaattcacgacttagctgaaacagaaatagacagaggaacttttggaaataaatgtattattaaacctaggttgtatttttgttcaaattacatagtggtttgttacatttagtatgattacaacgtt
gi|12 : agtaTGGTACGAAAC-CAC-CC-----GGTACGAAATT-TAAGTGGTAC--------GAAA---CCTC---tacataagactgtccaggttgtgtcaacttgtattgatttaaatgattgaaagagtgtcactagtttgacctgtatttactcataataagtaactaattta
gi|12 : aaatgttcccgtttagaaatggttgttgCCATTTGAGAAGGTTTCGTAC--CGTA-------TATTA-----AATATATA--GTG------AT-TAAATTTTTACT---TTG-----TTTAA-TACTTTAACA--------CATGTTTCCTATT---------GACTTCCTGTACATGGAGAGA------AATTAGA-T---ATA--A-AT-GA-TGA----AAATAAAA-GA-AAtttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaataaaagaaacatagagtgtttaaaactttattttgtat
gi|12 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaATA-------AAAGA-----AACATAGA--GTG------TT-TAAAACTTTATT---TTG-----Tcatagagtgtttaaaactttattttgtat
gi|13 : aaatgttcccgtttagaaatggttgttggaggtttcgtaccacttaaatttcgtaccgggtggtttcgtaccatttgagaaggtttcgtaccgtatattaaatatatagtgattaaatttttactttgtttaatactttaacacatgtttcctattgacttcctgtacatggagagaaattagatataaatgatgaaaTATACAT--T------TC------ATATATGGTACAAAAC-CTC-CTGAAATGGTACGAAACC-AC-CCGGTAC--------GAAA---CCTC---CA-----AAACC-CAATat
gi|13 : tctgCCATTTCAGGAGGTTTTGTAC--CATA-------TATGA-----AATGTATA--GTGATATTTTT-TAAA----TACA---T----------AACT--------A--------CATGTTTCCTATT---------CATTTCATGTAATCGTATAGA------ACTTAGA-T--CATA--ATATCGA-TAT----AAATTATG----AAAGATgtgatattttttaaatacataactacatgtttcctattcatttcatgtaatcgtatagaacttagatcataatatcgatataaattatgaaagatatgtttaaga
gi|15 : tctgattgggttttggaggtttcgtaccgggtggtttcgtaACTGTCACAAACTA---A--CTATATACA-------TAATGTAAATAC----CA---------T--------------C---ATAGTTATTT--GAT--TGACACTTTAGAATCATGT--GAAACAC-AAAAAAG----TTTACACAT--GA----AT---------GTGAGAAAAAAAA--------AATT-GGTACAGAATT-GAATTGATAC--------AAAA---CCTA---T--------ATT-AAATTCatgtttaaga
gi|16 : -----C----TA---------T--------------C---ACACCTAAACAAGGT--TG-------------------GAAATAC-TATAAAG----TTTATGCAT--TA----ATCT-----ATGTGTGGTACGAAAC-CTC-TCAATTTGGTACAAAGTT-GCAGTGTTAC--------AAata
gi|17 : agaatcacaaataatgacttcttaaaagatgaactgaataacccaaataacaatatgaCT---TTG-----TTTAA-T--------AATGTAATACAAGTTTCCTATT---------CATTTCCTGAACATGGATAGA------AATTTGA-T--AATGATATATTGA-TAT----AAATGATG-GA-AA
gi|17 : ATA--------ATGC-----AATATATT--GTG------TT-TAGAACCTTAAT---TTG-----TTTtaatgcaatatattgtgtttagaaccttaatttgtttttactttta
gi|19 : ctttgtttaataatgtaatacaagtttcctattcatttcctgaacatggatagaaatttgataatgatatattgatataaatgatggaaC---TG-----AAATT-GAATTCCAGTCCCTTA-CAGTGTCTGAGATAAAACTGAACTTAAAACTATCTATTCTTGCACAAGGAATAACAAATGCATA---CTAATTCCTACCACGATCTTGCTTATttactttta
gi|2 : tcagC---TG-----GAATT-GAATTCCAGTCCTTTA-CAGTGTCTGAGATAAAACTAAACTTGAAACTATCTATTCTTGCACAAGGAACAACACATGAATACTATTCCTACCTACCATGATCTTGCCTATCAG-----------------------AATGTTAGCCCTACCATTTCGACCTTT---GTAGAAG---AAAATTTAC--CGT--GCTTCTTTTCTACGTTGATTAAAAGGTTTCCAATCTAATTTTGACAGCA----CGTCATACTACAAAACAGGTTTATAATT---GT-AGTCTGACGTAACAAACCTAGCTACTCTAGTTTTA--ACCTTTTCCAAA-TCATCCTAGAGACCGACACAATGAGGATCTCAGACGGATCCA-GCGTACTCAAAGACTGAAGTCGCTTAACTAAACCCATATATGCTGTTCTTTGGCCTTTGTGGCACACGACCCC--ATTGTTCTCATTAGAACAT---CTTTATCACGGTCCTATTTGTCTTAGAACTTACATATTACTTCTGTTGGTATTACATTCAA---CG-C-ATAATGGTCATCACTAAGTATCTGACATAATTAACATCCTCC--ATCAGTGTGCCTTCGAGTGTAT---GAAAAG--ACAGAACTCTTCTTCTTT--CTAGATAACCTCAGTGGTATTTCA
gi|21 : gatctcagTCAGGAGGTTTTGTAC--TACA-------TATGATATATGATATATATTATG------TTGTAA------GCT---TTG-----TTGAA-T--------A--------Ctttctttctatgcccactttacgagcacatacacgtagactatcaatatcttcttgcaacatgtttccatcct
gi|23 : accattataatttcgtattgtgctgtttaatacaatttaAAACAA-TATATAT----TTCATACCC--T-------CT-----TTATGTTGTATGAAAC-C------ATGTGGTACGAAATT-GTAGAGGTAC--------GAAA---
gi|23 : GGTTTCATACAACATAAAGAGGGTATGA-----AATATATA--TTG------TT-TAAAACTTTACT---TTG-----TTTAA-T--------A--------CATGTaaaactttactttgtttaatacatgt
gi|25 : tttcgtacctctacaatttcgtaccacatTGGTATGAAAC-------AACCCGGTACAAAATT-ATAGTGGTAT--------GAAA---C
gi|25 : tggcaCCATTTGAGGAGGTTT-------------------ATGA-----AATGTATA--GTG------AT-TAAATATTTACT---TTtttgaggaggtttatgaaatgtatagtgattaaatatttacttt
gi|26 : tggcagtttcataccactataattttgtaccgggttgtttcataAAACTATCTGTTATTGCACAAGGAACAGCAAATGAAGA---TACATTCATACTA----CTTGCCTA
gi|27 : caagttACAAAAC-CTC-TCAATCTGGAAC-AAATT-ATAGTGGTAC--------AAAA---TCTG---TG-----TAATT-Cgtctaaatgagtatggcacatt
gi|28 : GGTACGAGAC-CTCCTTAAGT-GGTATGAAATT-GTAGTGGTAT--------GAAA---Ccccaataacagctgaatccctgtaatacca
gi|3 : attatgtaatggttataatggttgttggttTTAAC-----GCGCTTCTTTTCTACGTTGCTTCAAGGACTTCCAAGTTAATTTTGACAGTACATTCGTCACACTAC----CTAGTTCATAGTTGC-G---GTCTGACGTAGCATATATAGCTGCTCTAT-TTTGG-ACCTTTTTCAAA-TCGTCCTTGAGACCTACGCAACGATGATCCAAGAAGGAACTAGAT-TACTCTAAAACTG-----ACCTAACTAAAGCCATGTATGCTGTT------TCTTTG-----------------GTCTT-TGC--GGGACATGACCCC----AAA----TGTCT-CCTTTGAATATGC--ATTACTTATGCGGGTATTCAAGTTAAGATCACCTGTAATGGTCAATACTAAGTATGTAACAGAATTAGCAT-T------------CGCCTTCGGATGTATAAGAAGAAGGAACAGAG------ATTTTTCCCCAGATAACTTCA-TGTTATAACA
gi|31 : atTGGTACGAAACC-ACC-TGGTAC--------GAAA---CCTC---CAACAACCGATT-CAACTCtttctttggccgaaatatcacgccccatttaacgaaccaaaacactttaactatcaatactattcttgcaacctatttctatcctcttggccttttattgacctatatcaaacacagtca
gi|31 : tgttttgaaTGGTACGAAAC-C------ACCTGGTACGAAAtttcaggagggt
gi|33 : tgttttgaagagttgaatcggttgttggaggGGCGTACTCTACCGTTG-----GTCTAACTAA-GCCATGTATGCTGTT------TCTTTG------------tttcaggagggt
gi|4 : gaggcagct--GAA--TG----------------G--GAAACATGTATAAAAAAAATAAATACAT--T------TC------ATATATGGTACGAAACTTTC-TGAA-ATGGTACGAAATT-GTAGTGGTAC--------GAAA---CTTC---attt
gi|4 : atacaaatgtcgatcaatggttgttggCCATTTCAGAAAGTTTCGTAC--CATA-------TATGA-----AATGTAT----------------------TTATT---TTT-----TTTA--T--------A--------CATGTTTCCCATT---------CATTCCATGTACAAGTA-------------TAGA-------A--AT-TAGA-TCA----TAAT-ATC-GGTAAAAATT-ATGTATGAAAGATAATGTGTT-TAAAACTTTATTTTGTTTAAT-ACAAACACGT-ATGCT---CAATT------------TAA-AGA-A-----CA-AA---ATAATAA-------------ACCATCACT---CACACACTCATTACAAACA--AAAAACATAATAAGAGTGTGATAGCGACTCCTTATAGTGTGAAATACTATATAGTTTATGAATG-------AA-TCC-----T----TA---------T--------------C---A----TAGT---------G----------------T--GAAATAC-TATATAG----TTTATGAAT--GA----ATCT-----ATGTGTGGTACGAAAC---C-TCAATTTGGTATAAAATT-GTAATGGTAC--------GAAA---CCTC---TG-----TAATTCCAATattccatgtacaagtatagaaattagatcataatatcggtaaaaattatgtatgaaagataatgtgtttaaaactttattttgtttaatacaaacacgtatgctcaatttaaagaacaaaataataaaccatcactcacacactcattacaaacaaaaaacataataagagtgtgatagcgactccttatagtgtgaaatactatatagtttatgaatgaatccttatcatagtgtgaaatactatatagtttatgaatgaatctatgtgtggtacgaaacctcaatttggtataaaattgtaatggtacgaaacctctgtaattccaatcaatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : atacaaatgtcgatcaatggttgttgggaagtttcgtaccactacaatttcgtaAAACAC-TATATAT----TTCATATATGGTACGAAACCTCCTCAA---GTGGTACGAAAC-C------ATCCAGTACGAAACT-GTAGTGGTAC--------GACA---CCTC---caatatacatggaaatggaaactggtgtaacatttacagataacttgaactt
gi|5 : gCCACTTGAGGAGGTTTCGTAC--CATA-------TATGA-----AATATATA--GTG------TT-TAAAACTTTACTGTGTTGAATACTTTAA-T--------A--------CATGTTTCCCATT-----------------GTAGAAATATTGATGAAACAATTAAAGTAACATA--TTATTGGCTGATCATGAATGTTT-GA-TAA--TTAAGGTACAAACAAGCACGCATTATAA---T--------TTTAATTATAAAGACATTACACTATATAATTCCTTG-----GTTAATATATA-----TA-AATATG-AAT-ACGAATGTTTCTG-GTC-TTAGT---TACA-GCTCAATACAA-------------AATAA-----TAATAG----TCCA-ATACTATCACAAACTA---A--TTACAAACA-------AA-TAC-----CAT--CA---------TAAGTATATGATTGTC---ACATCTACT---AAT--TGGTG-------------T--GAAACAC-TATAAAG----TTTATGCTT--TA----ATCT-----ATGTGTGGTACCAAAT-CTC-TCAATTTGGTACAAAATT-GTAGTGGTAC--------AAAA---CCTC---TG-----TAATT-aaaactttactgtgttgaatactttaatacatgtttcccattgtagaaatattgatgaaacaattaaagtaacatattattggctgatcatgaatgtttgataattaaggtacaaacaagcacgcattataattttaattataaagacattacactatataattccttggttaatatatataaatatgaatacgaatgtttctggtcttagttacagctcaatacaaaataataatagtccaatactatcacaaactaattacaaacaaataccatcataagtatatgattgtcacatctactaattggtgtgaaacactataaagtttatgctttaatctatgtgtggtaccaaatctctcaatttggtacaaaattgtagtggtacaaaacctctgtaatt
gi|6 : ggaggtgtcgtaccactacagtttcgtactggatggtttcgtaA---CCTCAGCTG-----AAATT-GAATTCAGGTCCGTTAACAATATCTGGGATAAAACT-----TAAAGCTATCTGTTCTTGCATAAGGAACAACAAATGAAGA---TTCTAACCTACCAGGACCTTGCCTGTCAGGATGGATCTAGCCCGTTGATATAAAT-TTAGATCTACCATTTTAACCTTT---GTAGAAG---AGGATTAAC--C--AAGCTTTTTTTCTACATTACTTCAAGGGTTTCCAAGCTAATTTAGACAGT-C-TTTGTCATACCAC----CTGGTTCAAAATT
gi|7 : ctagttttacaggtatttttctgtacaatagtggcatgtgagcaccaagcacatccagaaacctacttacaacctctaactgctgaagcaaagctagccacagaatcagtggctatatttgtttggaaatgGGCACAAAATCAGTGGTGGCATTTGCTTTGGAAATGACCTCAGCTG-----CAATT-GAATTCCAGTCCCTTA-CAGTGTTTGGGATAAAACTAAAACTAAAACTGTCTGTTCTTGCATAAGGAACAACAAACAAAGA---TTCATTCCTACCATGACCTTGCCTACCAGTA-GGAAACAACTCATTGATAGGAATATAAACCCTACCACTTTGATCTCT---TTAGAAG---AGAATTTAC--CATGC
gi|8 : tgatcttgattattttaagtgcatttgacatgtgagctccgtgtatattcagaaacctacttacaacctctaacagctgaagccaggctaATTTCTCG------TTAATATA-A-----TA-AATATATAATGAA-AGTAT----GTCTCAC-AGC---TACA-TTTTAA--CCA-TA--AA-----TAATAA-----TAATAA----TCCA-ATACTATCACACACTA---A--TTACAAACA-------AG-TTT-----A----TAAGTATATGAT--------------TGAGACACCTACT---AAT--TGGTG-------------T--GAAACAC-TATAAAG----TTTATGCAT--TA----ATCT-----TTTTGTGGTACGAAAC-CTC-TCAATTTTATACGAAATT-GTAATGGTAC--------GAAA---CCTG---TGC----CAATT-CAAttttt
gi|9 : A---CCTCAGATG-----GAATT-TAATTCCAACCCCTTA-AAGTGTTTGGAATAAAACTAAACTTGAAACTATCTGTTCTTGCATAAGGAACAACAAATGAAAT---TCCATTCCTACCACGACCTTGCCTTACAGGA-GATACTAGCTCATTGAAGGGAATGTTAGCCCTACCATTCTAACCTTT---GTAGAAG---AGAATCAAC--CGT--GTTTCTTCTATAaaccggatactctacgataccatttatcttttaatagaagaactatttaagacaattatgtaactatttattatagtc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAGTTTTTCGGATGATCTTGATTATTTAAAGTACAACGTCATATGGCAGGTGAGAACCATGCTCTTTCAGATATCTAGTTACAGCCTCTAACAGATGAAGCAAAGTTGACCACAGAATCGGTTGCTGCATTTCCTTATGGAAAAGACCAGAGCTGGAATTGAATTCTAA
Unaligned ( gi|18 ): TTGATCTTGATTATTTATGCAATATTTAGCACAATGAACATCTAAAAACCTACTAACAACTTCTAGCAGCTGCAGTAAAGCTAGTAACAGAATCAAGCTGGCATTCGCTTTAAAAATGA
Unaligned ( gi|20 ): TGATAACCTCATGGTATAGCAGTTTTTTACGAACCCATAAACATAAACCATCAATATCTTCCAGTAACCTGTTTCTATCCTCTTCACCATTTATAGACCTGTAACAACCACAGTCGT
Unaligned ( gi|22 ): CTTGATCTTGACTTTAAAGTGCAATATCATTTAACATAAGAGCACCACACACATCCAGAAACCTAGCTGTAACAGCTGAAGCAAAGCTAGCCACAAACCATT
Unaligned ( gi|24 ): CTAACCGCTGAAGCAAAACTAGCAACTGATTAACTAGCTACAGAATCAGTGGCTGCATTCGTTTTGAAAATGACCTCAGCTGGAATTGAATTCA
Unaligned ( gi|29 ): CCTGATCTTGATTATTAAAGTGCAGTGTCACTACTCACATCTAGAAACCTGCTTACAACCTGTAACAGCTGAAGTA
Unaligned ( gi|30 ): TTGATCTTGATTAAAGTGTAACGTCATTTGACATATAAGCTCTATGCACATTTAGAAACCTATCAACAACTTGT
Unaligned ( gi|32 ): GTACACCTAGAAACCCACTTACAACCTTCTAACAGCTGTTCAAAGCAAAGCTAGCCACACTA