lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 1 111 5555555555 1 55555555555555555555555555555555 1 99999999999999999999999999999999999999999999999999999 444444444444 4444444444444 111 1111 1111111 11111 1111 11 1111111 1111111111 1 111 222222222 33333333 666666666666666666666666 1 33 77777777777777777777777777777777777777 2222 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888 1
lowQualScore : 7 5 7 3 3 777 1111111111 6 9 6 2 11111111111111111111111111111111 4 0 2 77777777777777777777777777777777777777777777777777777 333333333333 3 0 1 6666666666666 8 6 5 77 888 3 77 4444 7777777 0 77 66666 0 2222 88 5 77 77777 999999 3 0000000 3 44 0000000000 4 0 55 444 000000000 66666666 444444444444444444444444 5 6 44 0 6 99999999999999999999999999999999999999 8888 6 9 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 4 0
lowQualScore : . . . . . ... .......... . . . . ................................ . . . ..................................................... ............ . . . ............. . . . .. ... . .. .... ....... . .. ..... . .... .. . .. ..... ...... . ....... . .. .......... . . .. ... ......... ........ ........................ . . .. . . ...................................... .... . . . ................................................................................. . . .
lowQualScore : 5 0 0 7 7 000 7777777777 0 0 0 0 22222222222222222222222222222222 0 5 5 88888888888888888888888888888888888888888888888888888 555555555555 2 2 2 8888888888888 0 7 7 99 777 9 99 2222 9999999 3 99 99999 3 1111 11 7 99 11111 666666 3 8888888 3 88 2222222222 0 7 55 777 666666666 22222222 222222222222222222222222 3 0 00 7 0 33333333333333333333333333333333333333 3333 0 7 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 5
consensus : NNATTTCATCATGTCGATGCATTCGTTTCTNTTGATAAA---CC--GCCTGCCCGATAAACGTAGGTTTATCACGTCAATG-----CAAGTTTAT-CANNC--ACCTNGNCGTGANTNTNTACAA----------A-GTTTAACGC----TTT--C----------AATNTCG-----TAAAAT------AG-ATGAATTAGAAATATT----------GGCAT-GATA-AA-G--AGAA-TACC--ATGTTA----GTGTCTAATATTATCAACT--TCATCAG---GTTCG----GCACTA-AAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATT--CTCTAT-G-TAG--CG-----TTTGG--------TTTAT---TTCGCG---C---TTT---TATTTT-TTAAAAAAATGACATAATACAATGTCCATAATATA---TANTTTTG-C-TTTGATTT---G-TT-------GCATA----TATAAAATACGTGAAAAAAGAAANNCCCGAGGAATATTANAGAGGTCACAGTAGTTCCTGGCGGGTACAANCGCTTNGNCANGCGATCGACNCNGCAAGCTGGAGCTATGCNTTNGGCANAAAGC
Reference ( gi|2 ) : TTATTTGATGATGTCAATGAATTCATTTCTGTTCACAAA---CC--ACATGTCTGATAAACATAGGTTTATTACGTTACTG-----AAAGTTTAT-CAGGT--ACGTG-ACG-GAATGTCTACAA----------AAGTTTCATGC----TTT--C----------AATTTCA-----TAAAAT------AG-ACGAATTAGAAATATT----------AATAT-GATA-AA-G--AGTA-TACC--ATGTTA----GTGTCAACTATGATCAACT--TCATCTG---GTTCG----GCACTA-AAAATAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTAGT--CTCTAT-G-TAG--CG-----TTTGG--------TTTAT---TTTACG---C---TTT---TATTTTTTTAAAAAAATGACGTAATACTTTGTCCACAGTACA---TAGTTTTGACATTTGATTT---G-TT-------GCATA----TATAAGATACATAAAAAAAACAAAGTTAGATGAAT----TAAAAGTTGCGCTAATCGCT------CACAAT-GCTTGGAC-CGCG-TAGACATAATAAGC-AG-GCTATGCCTTAGGCACAAAGC
gi|3 : ATTT-ATCATGGCAATGCATTCATTTCTCTTGGTAAATTGCCTGCCCTGCCCGATAAACATAGGTTTATCACGTCAATG-----CAAGTTTAT-CAAAC--AC
gi|5 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaATTTCATCATATCAAATAATTAATTTCTGTTGATAAA---CT--GTCTGCTTGACAGACGAAGGTTTACCACGTCAATG-----CAAGTTAAT-CAGGC--ACTTT-TCGTGATTATGTATAA-------------TTATACAT----TTT--TACCTGGAACGAACTACGTT---TAAAATGAATTAAA-ATGAACTAGAAATTTT----------GGCAT-GATA-AA-T--AAAA-TACC--ATGaagatgtcattgtgtatatgtatacattttgaactggacgaaattattttaactcttttgttaactggatttcaatatcataaaagaatatgaattaaaaatatcgacacgataaagtcacttccatggttgtatcaggtatcatcagctttatcagattcagcacgaaaagaaaaacatcgatgaggctgttatttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|4 : gatatattcacagtggtcgatgaataacatcaataagcactcgcgttcattaacagtggttgtcaaataccaATCATGTCGGTGCATTTGGTTCTATTGATAAA---CT--GCCAGCCTGATAAACATAGGCACATGACTTCATTGTGTATAA---TTATACATTTTGACCTGGACA-GAATCTCTACAAACTGTTACAGAAGTTTAATGCTGATTTT--C----------AATTTCG-----TAAAA-------AG-GTGAATTAGAAATATT----------GGCAT-GATA-AA-G--AG-A-TTAC--ATGATA----GTGTCTAATACCATCAATG--TCATCAG---GTTCA----GCACCA-GAA
gi|1 : tatA----------ATGTTTAATGC----TTTGAT----------AATGTCAAAATATAAAAT------GG-CCCAAT-ATAAGTGTTGGCGCTTTGTAATATTGTTATAC-G--AGCAATGCCGTATGTTC----ACAT-AAC----ATCACGTGATCATCTGTAAGTCCGTGCCGC-TTA-AAAATAAAGCAAAGTACCCGAACGTTCTGAAAGCCAGGCTTTAATCAATGTTCATACAC----TTTCCAAATGTGAGTGAT--ATCATT-G-TGG--CG-----TTTGG--------TTTAT---TTTCTG---CGTATTT---T-TTTTTTTAAAAAAATGACATAATACAATGTCCATGATATATGTTAGTT----CGTTT--TTTTCAGCTT-------GCATA----TACTAAATACGTTAAAAATGAAAATCCAG--GAATATTATAAAGGTCACAGTAGTTCCTGGCGGGTATAATCATTTTGGC-GGTGATCAACTCTGCAAGC-AGAACTATGTCTTTGGCAAAAAGCgaacaaggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|3 : ----TTT--C----------AATATCA-----TAAAAG------AATATGAATTAAAAATATC----------GACAC-GATA-AA-GTCACT--T-CC--ATGGTT----GTATCAGGTATCATCAGCT--TTATCAG---ATTCA----GCACGA-AAAGAAAAACA-----TC-GA------T-GAGG-------CTGTT-Accgactaaaaaccatcaacaaatcaataaacatatacttgcaaaataccatc
gi|7 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaatttatcatggcaatgcattcatttctcttggtaaattgcctgccctgcccgataaacataggtttatcacgtcaatgcaagtttatcaaacacaagatgtcattgtgtatatgtatacattttgaactggacgaaattattttaactcttttgttaactggaT-AATA-TA-G--AGAA-TACC--ATGTTAACTAGTGTCTAATATTATCAACT--TTATCAG---GTGAG----GC-TTA-GGAAAAAAACA-----tttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|7 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtccA-AATG--AGAA-TACC--ATGTAA----ATGTCTAATATTATCATCT--TCATCAT---GTTCG----GCA-TG-AAA--AAAACA-----gactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|4 : cacagccgaacagtctaaA-G--AGAA-TACC--ATGTTA----CTGTCTGATATATTCAACT--TTATCAG---GTAAG----GC-TTAGAAAATAAAACA-----aggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|9 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtccTATTATCAACT--TCATCAG---ATTTG----GAGCGA-AAAAagt
gi|13 : gtcctaAAACA-----CCACC------T-AAAG-------T-----AATAT-AAGACAC----T-----AAAATG-ATATT--GTCTGT-atcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
gi|7 : gactcggcagagcctcgtactgttttttttAACA-------TGA------T-GAAG-------ATGAT-AATAT-TAGACAT----T-----TACATG-GTATT--CTC
gi|7 : cacagccgaacagtctaaaaatCA-----CCTGA------T-AAAG-------TTGAT-AATAT-TAGACACTAGTT-----AACATG-GTATT--CTCTAT-ATTAGACTG-----TTCGGCTGTGATTTTTATACGTTCGCC---C---TTTCGGTATTTTGTTcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|10 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctCA-----CGTGA------T-AAAT-------TTTAG-ACTTT-AAGGTAC----T-----AACGTG-GTATT--CTTTA
gi|4 : tgtttggctaaaacaacaacaacactaacttgtcacttggctagtactcttttttttctacctA-----CCTGA------T-AAAG-------TTGAA-TATAT-CAGACAG----T-----AACATG-GTATT--CTCTA
gi|4 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtcctgttttattttctaagccttA-----CCTGA------T-GACA-------TTGAT-GGTAT-TAGACAC----T-----ATCAT--GTAAT--CTCTgt
gi|3 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaA-----TCTGA------T-AAAG-------CTGAT-GATAC-CTGATAC----A-----ACCATG-GAAGTGACTTTATCG-TGT--CGATATTTTTAA--------TTCAT---ATT------C---TTT---TATtcagcaccagaagaacaaggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|9 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaatttatcatggcaatgcattcatttctcttggtaaattgcctgccctgcccgataaacataggtttatcacgtcaatgcaagtttatcaaacacaagatgtcattgtgtatatgtatacattttgaactggacgaaattattttaactcttttgttaactggatttcaatatcA-----TCTGA------T-GAAG-------TTGAT-AATAT-AGGACtcagcacgaaaagaaaaacatcgatgaggctgttatttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|14 : -----CCTGA------T-AATG-------TTTAG-AATTT-CAGGCAC----T-----AACATA-GTATT--CTGTAT-A-TAG--CA-----Tttggagcgaaaaaatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
gi|3 : TGA------T-AAAG-------TTGAT-AATAT-CAGATAA----T-----Agccacttatctccttacattttc
gi|9 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaatttatcatggcaatgcattcatttctcttggtaaattgcctgccctgcccgataaacataggtttatcacgtcaatgcaagtttatcaaacacaagatgtcattgtgtatatgtatacattttgaactggacgaaattattttaactcttttgttaactggatttcaatatcataaaagaatatgaattaaaaatatcgacacgataaagtcacttccatggttgtatcaggtatcatcagctttatcagattcagcacgaaaagaaaaacatcgatgaggctgttatttctaagcctcaaaAC----T-----AACATG-GTATT--CTCTAT-T-TAttctggttcctttaat
gi|8 : gtcctatattatcaacttcatcagatttggagcgaaaaaatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaa-TAG--TG-----TTTGA--------CTTAT---TTCATGAAAC----------ATTTT----AAAAATTGACATAGTACAAAGCCCATAATA-----TAATTTTAGTCTCTGAATT---G-TT-------GCATACTTTTATAAAATACATGAAAAAAt
gi|6 : aatttgattgatattatttTAACAATAAGACATGATACAATGTTAACAATGTA---TTTTTTTG---TTTGATTT---G-TTTCTGCTTGCTTA----TATAAAATGCATGAAAAGAAAAACATTCAAGGAAT----AAGAAGTgaaa
gi|6 : CAAA-GCTTGATCACGCC-T-GACATAA---GCTGG-GCTATGCATTAGGCATAAAGCagttcatgtgtcgtgtacgattattttggaagtgattaacacagcaaagcttgatcacgcctgacataagctgggctatgcattaggcataaagcccagataaaaactataatttaaaatatagtaggaaaacaatca
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTCAAGGAATAAAAGGTAGTTCCTGTCGCGTATGATTATTATTTTGGTAATCAACACTGCAAAGCTTGATCACGACGACAT
Unaligned ( gi|12 ): AGACTCGGCAGAGCATCGTCCTGTTTTTTTCTAACTCTCACATAATAAAGTTGTTAGTGTCAGACATGATATTCTTAAT
Unaligned ( gi|15 ): CAAGGACTTGGTAGAGCCTCTTCTTGTTTTTTTTTAAGCCTC
Unaligned ( gi|16 ): TTCGGCACAAAAAAAGCAAAGACTTGGCAGAGCCTCATCCT
Unaligned ( gi|17 ): GTTCGGGACGAAAAAAACAAGGACTCGGCAGAGCTTTGTC
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 222222 66666666666666666666666 444444444 222 111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33333 2222222 11111 1111111 1111 1111 1 111111 1111111 1111111111 11 11 22222222 111 4444444444444444444 11 333 11 1 3333333 2222 222222 44444 11111 3333333 1111 3333 22222222222222222222222222222
lowQualScore : 3 2 2 22 1 2 777777 00000000000000000000000 0 000000000 111 111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 11111 8888888 8 0 66666 8888888 5 5 1 2222 1 5 2 66 888 0000 1 1 5 1 99999 111111 4 3333333 44 0 4 1111111111 3 00 11 99999999 444 5555555555555555555 7 555 33 1 666 2 33 0 2222222 1111 2 0 222222 22222 0 77777 5555555 4444 1 2222 0 7 44 1 1 22222222222222222222222222222 1 1 1
lowQualScore : . . . .. . . ...... ....................... . ......... ... ... ....................................................................................... . ..... ....... . . ..... ....... . . . .... . . . .. ... .... . . . . ..... ...... . ....... .. . . .......... . .. .. ........ ... ................... . ... .. . ... . .. . ....... .... . . ...... ..... . ..... ....... .... . .... . . .. . . ............................. . . .
lowQualScore : 7 0 5 22 0 0 000000 22222222222222222222222 2 000000000 000 000 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00000 6666666 0 8 77777 6666666 0 0 7 1111 2 0 9 99 888 6666 2 9 0 0 11111 555555 0 0000000 88 1 4 9999999999 6 33 00 00000000 000 4444444444444444444 3 555 88 2 555 5 88 0 5555555 2222 0 2 000000 33333 7 00000 0000000 3333 0 3333 7 3 33 0 0 77777777777777777777777777777 0 0 0
consensus : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAA-------------ACGT------AGGTTTATCA---------CGTCA--NTGTAAGTTTATGCANGC--AC------CTGGACG-GANTATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG----GCACNA-AAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTCTATG-TAG--CGTTCGG--------TTTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G-TT-------GCATA----TATAAAATACATGAAAAAAGAAAANTC-GAGGAATA---TAAAGGTCGCAGTAGTTCCTG-G-CG-GTACGATCGTTTTGGC-NGCGATNAACACAGCA----------------------AGC-GG-GCTATGCCTTAGGCANAAAGC
Reference ( family-1948 ) : NNATTTCATCATGTCGATGCATTCGTTTCTNTTGATAAACCGCCTGCCC-----GATAA-------------ACGT------AGGTTTATCA---------CGTCA--ATGCAAGTTTAT-CANNC--AC------CTNGNCGTGANTNTNTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATNTCG-----TAAAAT------AG-ATGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATTATCAACT--TCATC---AGGTTCG----GCACTA-AAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTCTATG-TAG--CGTTTGG--------TTTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCATAATATATANT--TTTG-C-TTTGATTT--G-TT-------GCATA----TATAAAATACGTGAAAAAAGAAANNCCCGAGGAATATTANAGAGGTCACAGTAGTTCCTG-G-CGGGTACAANCGCTTNGNCANGCGATCGACNCNGCA----------------------AGCTGGAGCTATGCNTTNGGCANAAAGC
gi|1 : A-----------AT-GT------TTA-AT--GC----TTTGAT----------AATGTCAAAATATAAAAT------GG-CCCAAT-ATAAGTGTTGGCGCTTTGTAATATTGTTATAC-GAGCAATGCCGTAT--------GTTCACATAACATCACGTGATCATCTGTAAGTCCGTGCCGC-TTA-AAAATAAAGCAAAGTACCCGAACGTTCTGAAAGCCAGGCTTTAATCAATGTTCATACAC----TTTCCAAATGTGAGTGATATCATTG-TGG--CGTTTGG--------TTTAT---TTTCTGCG---TATTT---TT-TTTTTTAAAAAAATGACATAATACAATGTCCATGATATATGTTAGTTCG-T-TTT--TTTCAGCTT-------GCATA----TACTAAATACGTTAAAAATGAAAATCC--AGGAATATTATAAAGGTCACAGTAGTTCCTG-G-CGGGTATAATCATTTTGGC-GGTGATCAACTCTGCA----------------------AGC-AGAACTATGTCTTTGGCAAAAAGC
gi|10 : CA-----CGTGA------T-AAAT-------TTTAG-ACTTT-AAGGTAC----T-----AACGTG-GTATTCTTTAccgactaaaaaccatcaacaaatcaataaacatatacttgcaaaataccatc
gi|12 : tgtttggctaaaacaacaacaacactaacttgtcacttggctagtactcttttttttctacctCA-----CATAA------T-AAAG-------TTGTT-AGTGT-CAG---------------ACATG-ATATTCT
gi|13 : agactcggcagagcatcgtcctgtttttttctaactctAAACA-----CCACC------T-AAAG-------T-----AATAT-AAGACAC----T-----AAAATG-ATATTGTCTGTtaat
gi|14 : gactcggcagagcctcgtactgtttttttt-----CCTGA------T-AATG-------TTTAG-AATTT-CAGGCAC----T-----AACATA-GTATTCTGTATA-TAG--CATGCCA--------CTTAT---CTC--------C-TTA---CA-TTTT
gi|2 : ATTTGATGATGTCAATGAATTCATTTCTGTTCACAAACCACATGTCT-----GATAA-------------ACAT------AGGTTTATTA---------CGTTA--CTGAAAGTTTAT-CAGGT--AC------GT-GACG-GAATGTCTACA-----------AAAGT------TTC-AT--GC----TTT--C----------AATTTCA-----TAAAAT------AG-ACGAATTAGAAATATTAATA-----TGATA-------AA-GAG-TATACCATGTTA----GTGTCAA-CTATGATCAACT--TCATC---TGGTTCG----GCACTA-AAAATAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTAGTCTCTATG-TAG--CGTTTGG--------TTTAT---TTT--ACG---C-TTT---TATTTTTTTAAAAAAATGACGTAATACTTTGTCCACAGTACATAGT--TTTGACATTTGATTT--G-TT-------GCATA----TATAAGATACATAAAAAAAACAAAGTTAGATGAAT----TAAAAGTTGCGCTAATCGCT--------CACAAT-GCTTGGAC-CGCG-TAGACATAATA----------------------AGCAG--GCTATGCCTTAGGCACAAAGCc
gi|3 : ttTTTATCATGGCAATGCATTCATTTCTCTTGGTAAATTGCCTGCCCTGCCCGATAAACATAGGTTTATCACGTCAATGCAAGTTTATCAAACACAAGATGTCA--TTGT--GTATATGTATAC--ATTTTGAACTGGACGAAATTATTTT-------------AA-CTCTTTTGTTA-ACTGGA----TTT--C----------AATATCA-----TAAAAG------AATATGAATTAAAAATATCGACA-----CGATA-------AA-GTC-ACTTCCATGGTT----GTATCAG-GTATCATCAGCT--TTATC---AGATTCA----GCACGA-AAAGAAAAACA-----TC-GA------T-GAGG-------CTGTT-A
gi|3 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaaTGA------T-AAAG-------TTGAT-AATAT-CAGATAA----T-----ATTCTG-GT-TCCTTTAtttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|4 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaatttatcatggcaatgcattcatttctcttggtaaattgcctgccctgcccgataaacataggtttatcacgtcaatgcaagtttatcaaacacaagatgtcattgtgtatatgtatacattttgaactggacgaaattattttaactcttttgttaactggatttcaatatcataaaagaatatgaattaaaaatatcgacacgataaagtcacttccatggttgtatcaggtatcatcagctttatcagattcagcacgaaaagaaaaacatcgatgaggctgttatttctaagcctcaaaATCATGTCGGTGCATTTGGTTCTATTGATAAACTGCCAGCCT-----GATAA-------------ACAT------AGGCACATGA---------CTTCATTGTGTATAATTATACATTTTGAC------CTGGACA-GAATCTCTACAAACTGTTACAGAA-GT------TTA-AT--GCTGATTTT--C----------AATTTCG-----TAAAA-------AG-GTGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-ATTA-CATGATA----GTGTCTA-ATACCATCAATG--TCATC---AGGTTCA----GCACCA-GAAGAACAAat
gi|4 : tatA-GAG-AATACCATGTTA----CTGTCTG-ATATATTCAACT--TTATC---AGGTAAG----GC-TTAGAAAATAAAACA-----ggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|4 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtccA-----CCTGA------T-AAAG-------TTGAA-TATAT-CAGACAG----T-----AACATG-GTATTCTCTAagt
gi|5 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtcctgttttattttctaagccttATTTCATCATATCAAATAATTAATTTCTGTTGATAAACTGTCTGCTT-----GACAG-------------ACGA------AGGTTTACCA---------CGTCA--ATGCAAGTTAAT-CAGGC--AC------TTT-TCGTGATTATGTATA-----------A----------TTATAC--AT----TTT--TACCTGGAACGAACTACGTT---TAAAATGAATTAAA-ATGAACTAGAAATTTTGGCA-----TGATA-------AA-TAA-AATACCATGgt
gi|6 : gatatattcacagtggtcgatgaataacatcaataagcactcgcgttcattaacagtggttgtcaaataccaTAACAATAAGACATGATACAATGTTAACAATGTATTTT--TTTG---TTTGATTT--G-TTTCTGCTTGCTTA----TATAAAATGCATGAAAAGAAAAACATTCAAGGAATA----AGA------AGTAGTTCATGTGTCGTGTACGATTATTTTGG-AAGTGATTAACACAGCAAAGCTTGATCACGCCTGACATAAGCTGG-GCTATGCATTAGGCATAAAGC
gi|7 : A-------AATGAG-AATACCATGTAA----ATGTCTA-ATATTATCATCT--TCATC---ATGTTCG----GCATGA-AAAAAACAAccagataaaaactataatttaaaatatagtaggaaaacaatca
gi|7 : cacagccgaacagtctaa-----TAATA-------TA-GAG-AATACCATGTTAACTAGTGTCTA-ATATTATCAACT--TTATC---AGGTGAG----GC-TTA-GGAAAAAAACA-----ggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtccCA-----CCTGA------T-AAAG-------TTGAT-AATAT-TAGACACTAGTT-----AACATG-GTATTCTCTATATTAGACTGTTCGGCTGTGATTTTTATACGTTC--GCC---C-TTTCGGTA-TTTTgactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|8 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctTG-ATATTATTT----TAG--TGTTTGA--------CTTAT---TTC--ATGAAAC--------A-TTTT---AAAAATTGACATAGTACAAAGCCCATAATATA-ATT--TTAGTC-TCTGAATT--G-TT-------GCATACTTTTATAAAATACATGAAAAAAGAAAgtt
gi|9 : aatttgatGTCCT-ATATTATCAACT--TCATC---AGATTTG----GAGCGA-AAAA
gi|9 : AC----T-----AACATG-GTATTCTCTATT-TAatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTCAAGGAATAAAAGGTAGTTCCTGTCGCGTATGATTATTATTTTGGTAATCAACACTGCAAAGCTTGATCACGACGACAT
Unaligned ( gi|15 ): CAAGGACTTGGTAGAGCCTCTTCTTGTTTTTTTTTAAGCCTC
Unaligned ( gi|16 ): TTCGGCACAAAAAAAGCAAAGACTTGGCAGAGCCTCATCCT
Unaligned ( gi|17 ): GTTCGGGACGAAAAAAACAAGGACTCGGCAGAGCTTTGTC
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 22222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33333 2222222 11111 1111111 1111 1111 111111 1111111 1111111111 11 11 22222222 111 4444444444444444444 11 333 4444444444 2222 1 222 333333 222222 44444444 111 11 1 3333333333333333333333
lowQualScore : 1 1 22 0 2 55555 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 8888888 8 0 66666 8888888 5 5 1 2222 1 5 2 66 888 0000 8 1 1 99999 1 222222 4 4444444 0 4 1 55 0 4444444444 4 4 3 11 88 44444444 444 5555555555555555555 7 44 33 4 666 2 6666666666 1111 0 0 000 4 333333 888888 77777777 777 22 8888 3 1 4 0 1111111111111111111111 1
lowQualScore : . . .. . . ..... . ............................................................................................................................................... . ..... ....... . . ..... ....... . . . .... . . . .. ... .... . . . ..... . ...... . ....... . . . .. . .......... . . . .. .. ........ ... ................... . .. .. . ... . .......... .... . . ... . ...... ...... ........ ... .. .... . . . . ...................... .
lowQualScore : 0 0 22 2 0 00000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 00000 6666666 0 8 77777 6666666 0 0 7 1111 2 0 2 99 888 6666 4 0 0 11111 0 888888 4 4444444 1 4 2 22 9 2222222222 0 4 9 00 33 22222222 000 4444444444444444444 3 55 88 2 555 5 2222222222 2222 2 0 000 2 222222 222222 55555555 555 55 0000 2 0 0 0 7777777777777777777777 0
consensus : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGG-------------------TTTATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG----GCACGAAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TATN-TAG--CGTTCGG--------CTTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--GC------TTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAA---TATAAAGGTCGCAGTAGTTCCTG-G-C-GCGTACG---ATTATTTTGGCGGCGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
Reference ( family-1948 ) : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACGTAGG-------------------TTTATCA---------CGTCANTGTAAGT--TTATGCA---NGCAC------CTGGACG-GANT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG----GCACNAAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TATG-TAG--CGTTCGG--------TTTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G-------TTGCATA----TATAAAATACATGAAAAAAG-AAA-ANTCGAGGAA---TATAAAGGTCGCAGTAGTTCCTG-G-C-G-GTACG---ATCGTTTTGGCNGCGATNAACACAGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
gi|1 : A-----------AT-GT------TTA-AT--GC----TTTGAT----------AATGTCAAAATATAAAAT------GG-CCCAAT-ATAAGTGTTGGCGCTTTGTAATATTGTTATAC-GAGCAATGCCGTAT--------GTTCACATAACATCACGTGATCATCTGTAAGTCCGTGCCGC-TTAAAAATAAAGCAAAGTACCCGAACGTTCTGAAAGCCAGGCTTTAATCAATGTTCATACAC----TTTCCAAATGTGAGTGATATC-ATTG-TGG--CGTTTGG--------TTTAT---TTTCTGCG---TATTT---TT-TTTTTTAAAAAAATGACATAATACAATGTCCATGATATATGTTAGTTCG-T-TTT--TTTCAGC------TTGCATA----TACTAAATACGTTAAAAATG-AAA-A-TCCAGGAATATTATAAAGGTCACAGTAGTTCCTG-G-CGG-GTATA---ATCATTTTGGCGGTGATCAACTCTGC-AAGCA---------------------GAACTATGTCTTTGGCAAAAAGC
gi|10 : CA-----CGTGA------T-AAAT-------TTTAG-ACTTT-AAGGTAC----T-----AACGTG-GTATTCTT-TAccgactaaaaaccatcaacaaatcaataaacatatacttgcaaaataccatc
gi|11 : tgtttggctaaaacaacaacaacactaacttgtcacttggctagtactcttttttttctacctTCAAGGAA---TA-AAAGGT------AGTTCCTG-T-C-GCGTATGATTATTATTTTGGTA---ATCAACACTGC-AA
gi|12 : tCA-----CATAA------T-AAAG-------TTGTT-AGTGT-CAG---------------ACATG-ATATTCTagcttgatcacgacgacat
gi|13 : agactcggcagagcatcgtcctgtttttttctaactctAAACA-----CCACC------T-AAAG-------T-----AATAT-AAGACAC----T-----AAAATG-ATATTGTC-TGTtaat
gi|14 : gactcggcagagcctcgtactgtttttttt-----CCTGA------T-AATG-------TTTAG-AATTT-CAGGCAC----T-----AACATA-GTATTCTG-TATA-TAG--CATGCCA--------CTTAT---CTC--------C-TTA---CA-TTTT
gi|2 : ATTTGATGATGTCAATGAATTCATTTCTGTTCACAAACCACATGTCT-----GATAAACATAGG-------------------TTTATTA---------CGTTACTGAAAGT--TTAT-CA---GGTAC------GTG-ACG-GAAT-GTCTACA-----------AAAGT------TTC-AT--GC----TTT--C----------AATTTCA-----TAAAAT------AG-ACGAATTAGAAATATTAATA-----TGATA-------AA-GAG-TATACCATGTTA----GTGTCAA-CTATGATCAACT--TCATC---TGGTTCG----GCACTAAAAATAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTAGTCTC-TATG-TAG--CGTTTGG--------TTTAT---TTT--ACG---C-TTT---TATTTTTTTAAAAAAATGACGTAATACTTTGTCCACAGTACATAGT--TTTGACATTTGATTT--G-------TTGCATA----TATAAGATACATAAAAAAAACAAA-GTTAGATGAA---T-TAAAAGTTGCGCTAATCGCT---------CACA---AT-GCTTGGACCGCG-TAGACATAAT-AAGC----------------------AGGCTATGCCTTAGGCACAAAGCc
gi|3 : ttTTTATCATGGCAATGCATTCATTTCTCTTGGTAAATTGCCTGCCCTGCCCGATAAACATAGGTTTATCACGTCAATGCAAGTTTATCAAACACAAGATGTCATTGT--GT--ATATGTA---TACATTTTGAACTGGACG-AAATTATTTT-------------AA-CTCTTTTGTTA-ACTGGA----TTT--C----------AATATCA-----TAAAAG------AATATGAATTAAAAATATCGACA-----CGATA-------AA-GTC-ACTTCCATGGTT----GTATCAG-GTATCATCAGCT--TTATC---AGATTCA----GCACGAAAAGAAAAACA-----TC-GA------T-GAGG-------CTGTT-A
gi|4 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaaATCATGTCGGTGCATTTGGTTCTATTGATAAACTGCCAGCCT-----GATAAACATAGG-------------------CACATGA---------CTTCATTGTGTATAATTATACATTTTG-AC------CTGGACA-GAAT-CTCTACAAACTGTTACAGAA-GT------TTA-AT--GCTGATTTT--C----------AATTTCG-----TAAAA-------AG-GTGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-ATTA-CATGATA----GTGTCTA-ATACCATCAATG--TCATC---AGGTTCA----GCACCAGAAGAACAAtttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|4 : tatA-GAG-AATACCATGTTA----CTGTCTG-ATATATTCAACT--TTATC---AGGTAAG----GCTTAGAAAATAAAACA-----ggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|5 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtccATTTCATCATATCAAATAATTAATTTCTGTTGATAAACTGTCTGCTT-----GACAGACGAAGG-------------------TTTACCA---------CGTCAATGCAAGT--TAAT-CA---GGCAC------TTTT-CGTGATT-ATGTATA-----------A----------TTATAC--AT----TTT--TACCTGGAACGAACTACGTT---TAAAATGAATTAAA-ATGAACTAGAAATTTTGGCA-----TGATA-------AA-TAA-AATACCATGagt
gi|6 : gatatattcacagtggtcgatgaataacatcaataagcactcgcgttcattaacagtggttgtcaaataccaTAACAATAAGACATGATACAATGTTAACAATGTATTTT--TTTG---TTTGATTT--GTTTCTGCTTGCTTA----TATAAAATGCATGAAAAGAA-AAACATTCAAGGAA---T---AAGA----AGTAGTTCATGTGTC-GTGTACG---ATTATTTTGGAAGTGATTAACACAGCAAAGCTTGATCACGCCTGACATAAGCTGGGCTATGCATTAGGCATAAAGC
gi|7 : AACA-------TGA------T-GAAG-------ATGAT-AATAT-TAGACAT----T-----TACATG-GTATTCTCATTTT-TAGACTGTTCGG--------CTccagataaaaactataatttaaaatatagtaggaaaacaatca
gi|7 : cacA-------AATGAG-AATACCATGTAA----ATGTCTA-ATATTATCATCT--TCATC---ATGTTCG----GCATGAAAAAAACAAcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaa-----TAATA-------TA-GAG-AATACCATGTTAACTAGTGTCTA-ATATTATCAACT--TTATC---AGGTGAG----GC-TTAGGAAAAAAACA-----ggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtccCA-----CCTGA------T-AAAG-------TTGAT-AATAT-TAGACACTAGTT-----AACATG-GTATTCTC-TATATTAGACTGTTCGGCTGTGATTTTTATACGTTC--GCC---C-TTTCGGTA-TTTTgactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|8 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctTG-ATATTATT-T----TAG--TGTTTGA--------CTTAT---TTC--ATGAAAC--------A-TTTT---AAAAATTGACATAGTACAAAGCCCATAATATA-ATT--TTAGTC-TCTGAATT--G-------TTGCATACTTTTATAAAATACATGAAAAAAG-AAA-gtt
gi|9 : aatttgatGTCCT-ATATTATCAACT--TCATC---AGATTTG----GAGCGAAAAA
gi|9 : AC----T-----AACATG-GTATTCTC-TATT-TAatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAGGACTTGGTAGAGCCTCTTCTTGTTTTTTTTTAAGCCTC
Unaligned ( gi|16 ): TTCGGCACAAAAAAAGCAAAGACTTGGCAGAGCCTCATCCT
Unaligned ( gi|17 ): GTTCGGGACGAAAAAAACAAGGACTCGGCAGAGCTTTGTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 2222222 11111 1111111 1111 1111111111 111111 1111111 1111111111 11 22222222 111 4444444444444444444 11 333 4444444444 2222 1 1 1 3333333333333333 222 1 3333333333333333333333
lowQualScore : 1 1 22 0 2 55555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 11111 8888888 8 0 66666 8888888 5 5 1 2222 1 5 2 66 888 5 7777777777 1 99999 111111 4 3333333 44 0 4 1111111111 3 4 0 66 88 44444444 444 5555555555555555555 7 44 33 4 666 2 7777777777 1111 0 0 0 0 7777777777777777 3 2 222 0 3 000 2 3 0 1 0 1111111111111111111111 1
lowQualScore : . . .. . . ..... ............................................................................................................................................. . ..... ....... . . ..... ....... . . . .... . . . .. ... . .......... . ..... ...... . ....... .. . . .......... . . . .. .. ........ ... ................... . .. .. . ... . .......... .... . . . . ................ . . ... . . ... . . . . . ...................... .
lowQualScore : 0 0 22 2 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 00000 6666666 0 8 77777 6666666 0 0 7 1111 2 0 2 99 888 0 0000000000 0 11111 555555 0 0000000 88 1 4 9999999999 6 0 1 00 33 22222222 000 4444444444444444444 3 55 88 2 555 5 5555555555 2222 2 0 0 5 5555555555555555 2 5 555 2 2 888 0 2 2 0 0 7777777777777777777777 0
consensus : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-TTAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
Reference ( family-1948 ) : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-NTAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGCGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
gi|1 : A-----------AT-GT------TTA-AT--GC----TTTGAT----------AATGTCAAAATATAAAAT------GG-CCCAAT-ATAAGTGTTGGCGCTTTGTAATATTGTTATAC-GAGCAATGCCGTAT--------GTTCACATAACATCACGTGATCATCTGTAAGTCCGTGC---C--GCTTAAAAATAAAGCAAAGTACCCGAACGTTCTGAAAGCCAGGCTTTAATCAATGTTCATACAC----TTTCCAAATGTGAGTGATATC-ATT-GTGG--CGTTTGGT--------TTAT---TTTCTGCG---TATTT---TT-TTTTTTAAAAAAATGACATAATACAATGTCCATGATATATGTTAGTTCG-T-TTT--TTTCAG------CTTGCATA----TACTAAATACGTTAAAAATG-AAA-ATCC-AGGAATATTATAAAGGTCACAGTAGTTCCTG-G-CGGGTATAATCATTTTGGCGGTGATCAACTCTGC-AAGCA---------------------GAACTATGTCTTTGGCAAAAAGC
gi|10 : CA-----CGTGA------T-AAAT-------TTTAG-ACTTT-AAGGTAC----T-----AACGTG-GTATTCTT-TAccgactaaaaaccatcaacaaatcaataaacatatacttgcaaaataccatc
gi|11 : tgtttggctaaaacaacaacaacactaacttgtcacttggctagtactcttttttttctacctTTCAAGGAATA----AAAGGT------AGTTCCTG-T-CGCGTATGATTATTATTTTGGTAATCAACACTGC-AA
gi|12 : CA-----CATAA------T-AAAG-------TTGTT-AGTGT-CAG---------------ACATG-ATATTCTagcttgatcacgacgacat
gi|13 : agactcggcagagcatcgtcctgtttttttctaactctAAACA-----CCACC------T-AAAG-------T-----AATAT-AAGACAC----T-----AAAATG-ATATTGTC-TGT-taat
gi|14 : gactcggcagagcctcgtactgtttttttt-----CCTGA------T-AATG-------TTTAG-AATTT-CAGGCAC----T-----AACATA-GTATTCTG-TAT-ATAG--CATGCCAC--------TTAT---CTC--------C-TTA---CA-TTTT
gi|2 : ATTTGATGATGTCAATGAATTCATTTCTGTTCACAAACCACATGTCT-----GATAAACATAGGTT-------------------TATTA---------CGTTACTGAAAGT--TTAT-CA---GGTAC------GTG-ACG-GAAT-GTCTACA-----------AAAGT------TTC-AT--GC----TTT--C----------AATTTCA-----TAAAAT------AG-ACGAATTAGAAATATTAATA-----TGATA-------AA-GAG-TATACCATGTTA----GTGTCAA-CTATGATCAACT--TCATC---TGGTTCG-GC--AC--T---AAAAATAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTAGTCTC-TAT-GTAG--CGTTTGGT--------TTAT---TTT--ACG---C-TTT---TATTTTTTTAAAAAAATGACGTAATACTTTGTCCACAGTACATAGT--TTTGACATTTGATTT--G-------TTGCATA----TATAAGATACATAAAAAAAACAAA-GTTAGATGAAT-T---AAAAGTTGCGCTAAT--------CGCTCACAA-TGCTTGGACCGCG-TAGACATAAT-AAGC----------------------AGGCTATGCCTTAGGCACAAAGCc
gi|3 : ttTTTATCATGGCAATGCATTCATTTCTCTTGGTAAATTGCCTGCCCTGCCCGATAAACATAGGTTTATCACGTCAATGCAAGTTTATCAAACACAAGATGTCATTGTG--T--ATATGTA---TACATTTTGAACTGGACG-AAATTATTTT-------------AA-CTCTTTTGTTA-ACTGGA----TTT--C----------AATATCA-----TAAAAG------AATATGAATTAAAAATATCGACA-----CGATA-------AA-GTC-ACTTCCATGGTT----GTATCAG-GTATCATCAGCT--TTATC---AGATTCA-GC--AC--G---AAAAGAAAAACA-----TC-GA------T-GAGG-------CTGTT-A
gi|4 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaaATCATGTCGGTGCATTTGGTTCTATTGATAAACTGCCAGCCT-----GATAAACATAGGCA-------------------CATGA---------CTTCATTGTGTATAATTATACATTTTG-AC------CTGGACA-GAAT-CTCTACAAACTGTTACAGAA-GT------TTA-AT--GCTGATTTT--C----------AATTTCG-----TAAAA-------AG-GTGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-ATTA-CATGATA----GTGTCTA-ATACCATCAATG--TCATC---AGGTTCA-GC--ACCAG---AAGAACAAtttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|4 : tatA-GAG-AATACCATGTTA----CTGTCTG-ATATATTCAACT--TTATC---AGGTAAG-GC--TT--A---GAAAATAAAACA-----ggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|4 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtccA-----CCTGA------T-AAAG-------TTGAA-TATAT-CAGACAG----T-----AACATG-GTATTCTC-TAagt
gi|5 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtcctgttttattttctaagccttATTTCATCATATCAAATAATTAATTTCTGTTGATAAACTGTCTGCTT-----GACAGACGAAGGTT-------------------TACCA---------CGTCAATGCAAGT--TAAT-CA---GGCAC------TTTT-CGTGATT-ATGTATA-----------A----------TTATAC--AT----TTT--TACCTGGAACGAACTACGTT---TAAAATGAATTAAA-ATGAACTAGAAATTTTGGCA-----TGATA-------AA-TAA-AATACCATGgt
gi|6 : gatatattcacagtggtcgatgaataacatcaataagcactcgcgttcattaacagtggttgtcaaataccaTAACAATAAGACATGATACAATGTTAACAATGTATTTT--TTTG---TTTGATTT--GTTTCTGCTTGCTTA----TATAAAATGCATGAAAAGAA-AAACATTCAAGGAATA------AGA----AGTAGTTCATGTGTCGTGTACGATTATTTTGGAAGTGATTAACACAGCAAAGCTTGATCACGCCTGACATAAGCTGGGCTATGCATTAGGCATAAAGC
gi|7 : AACA-------TGA------T-GAAG-------ATGAT-AATAT-TAGACAT----T-----TACATG-GTATTCTCATTT-TTAGACTGTTCGGC--------Tccagataaaaactataatttaaaatatagtaggaaaacaatca
gi|7 : cacA-------AATGAG-AATACCATGTAA----ATGTCTA-ATATTATCATCT--TCATC---ATGTTCG-GC--AT--G---AAAAAAACAAcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaa-----TAATA-------TA-GAG-AATACCATGTTAACTAGTGTCTA-ATATTATCAACT--TTATC---AGGTGAG-GCTTAG--G---AAAAAAAggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgCA-----CCTGA------T-AAAG-------TTGAT-AATAT-TAGACACTAGTT-----AACATG-GTATTCTC-TATATTAGACTGTTCGGCTGTGATTTTTATACGTTC--GCC---C-TTTCGGTA-TTTTgactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|8 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctTG-ATATTAT----T-TTAG--TGTTTGAC--------TTAT---TTC--ATGAAAC--------A-TTTT---AAAAATTGACATAGTACAAAGCCCATAATATA-ATT--TTAGTC-TCTGAATT--G-------TTGCATACTTTTATAAAATACATGAAAAAAG-AAA-gtt
gi|9 : aatttgatGTCCT-ATATTATCAACT--TCATC---AGATTTG-GA--GC--G---AAAAA
gi|9 : AC----T-----AACATG-GTATTCTC-TAT-TTAatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAGGACTTGGTAGAGCCTCTTCTTGTTTTTTTTTAAGCCTC
Unaligned ( gi|16 ): TTCGGCACAAAAAAAGCAAAGACTTGGCAGAGCCTCATCCT
Unaligned ( gi|17 ): GTTCGGGACGAAAAAAACAAGGACTCGGCAGAGCTTTGTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 2222222 11111 1111111 1111 1111111111 111111 1111111 1111111111 11 22222222 111 4444444444444444444 11 333 4444444444 2222 1 1 1 3333333333333333 222 1 3333333333333333333333
lowQualScore : 1 1 22 0 2 55555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 11111 8888888 8 0 66666 8888888 5 5 1 2222 1 5 2 66 888 5 7777777777 1 99999 111111 4 3333333 44 0 4 1111111111 3 4 888 88 44444444 444 5555555555555555555 7 44 33 4 666 2 7777777777 1111 0 0 0 0 7777777777777777 3 2 222 0 3 000 3 0 1 0 1111111111111111111111 1
lowQualScore : . . .. . . ..... ............................................................................................................................................. . ..... ....... . . ..... ....... . . . .... . . . .. ... . .......... . ..... ...... . ....... .. . . .......... . . ... .. ........ ... ................... . .. .. . ... . .......... .... . . . . ................ . . ... . . ... . . . . ...................... .
lowQualScore : 0 0 22 2 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 00000 6666666 0 8 77777 6666666 0 0 7 1111 2 0 2 99 888 0 0000000000 0 11111 555555 0 0000000 88 1 4 9999999999 6 0 999 33 22222222 000 4444444444444444444 3 55 88 2 555 5 5555555555 2222 2 0 0 5 5555555555555555 2 5 555 2 2 888 2 2 0 0 7777777777777777777777 0
consensus : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-T-TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
Reference ( family-1948 ) : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-T-TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
gi|1 : A-----------AT-GT------TTA-AT--GC----TTTGAT----------AATGTCAAAATATAAAAT------GG-CCCAAT-ATAAGTGTTGGCGCTTTGTAATATTGTTATAC-GAGCAATGCCGTAT--------GTTCACATAACATCACGTGATCATCTGTAAGTCCGTGC---C--GCTTAAAAATAAAGCAAAGTACCCGAACGTTCTGAAAGCCAGGCTTTAATCAATGTTCATACAC----TTTCCAAATGTGAGTGATATC--AT-TGTGG--CGTTTGGT--------TTAT---TTTCTGCG---TATTT---TT-TTTTTTAAAAAAATGACATAATACAATGTCCATGATATATGTTAGTTCG-T-TTT--TTTCAG------CTTGCATA----TACTAAATACGTTAAAAATG-AAA-ATCC-AGGAATATTATAAAGGTCACAGTAGTTCCTG-G-CGGGTATAATCATTTTGGCGGTGATCAACTCTGC-AAGCA---------------------GAACTATGTCTTTGGCAAAAAGC
gi|10 : CA-----CGTGA------T-AAAT-------TTTAG-ACTTT-AAGGTAC----T-----AACGTG-GTATTCTT-TAccgactaaaaaccatcaacaaatcaataaacatatacttgcaaaataccatc
gi|11 : tgtttggctaaaacaacaacaacactaacttgtcacttggctagtactcttttttttctacctTTCAAGGAATA----AAAGGT------AGTTCCTG-T-CGCGTATGATTATTATTTTGGTAATCAACACTGC-AA
gi|12 : CA-----CATAA------T-AAAG-------TTGTT-AGTGT-CAG---------------ACATG-ATATTCTagcttgatcacgacgacat
gi|13 : agactcggcagagcatcgtcctgtttttttctaactctAAACA-----CCACC------T-AAAG-------T-----AATAT-AAGACAC----T-----AAAATG-ATATTGTC-TGT-taat
gi|14 : gactcggcagagcctcgtactgtttttttt-----CCTGA------T-AATG-------TTTAG-AATTT-CAGGCAC----T-----AACATA-GTATTCTG-TAT-A-TAG--CATGCCAC--------TTAT---CTC--------C-TTA---CA-TTTT
gi|2 : ATTTGATGATGTCAATGAATTCATTTCTGTTCACAAACCACATGTCT-----GATAAACATAGGTT-------------------TATTA---------CGTTACTGAAAGT--TTAT-CA---GGTAC------GTG-ACG-GAAT-GTCTACA-----------AAAGT------TTC-AT--GC----TTT--C----------AATTTCA-----TAAAAT------AG-ACGAATTAGAAATATTAATA-----TGATA-------AA-GAG-TATACCATGTTA----GTGTCAA-CTATGATCAACT--TCATC---TGGTTCG-GC--AC--T---AAAAATAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTAGTCTC-TAT-G-TAG--CGTTTGGT--------TTAT---TTT--ACG---C-TTT---TATTTTTTTAAAAAAATGACGTAATACTTTGTCCACAGTACATAGT--TTTGACATTTGATTT--G-------TTGCATA----TATAAGATACATAAAAAAAACAAA-GTTAGATGAAT-T---AAAAGTTGCGCTAAT--------CGCTCACAA-TGCTTGGACCGCG-TAGACATAAT-AAGC----------------------AGGCTATGCCTTAGGCACAAAGCc
gi|3 : ttTTTATCATGGCAATGCATTCATTTCTCTTGGTAAATTGCCTGCCCTGCCCGATAAACATAGGTTTATCACGTCAATGCAAGTTTATCAAACACAAGATGTCATTGTG--T--ATATGTA---TACATTTTGAACTGGACG-AAATTATTTT-------------AA-CTCTTTTGTTA-ACTGGA----TTT--C----------AATATCA-----TAAAAG------AATATGAATTAAAAATATCGACA-----CGATA-------AA-GTC-ACTTCCATGGTT----GTATCAG-GTATCATCAGCT--TTATC---AGATTCA-GC--AC--G---AAAAGAAAAACA-----TC-GA------T-GAGG-------CTGTT-A
gi|4 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaaATCATGTCGGTGCATTTGGTTCTATTGATAAACTGCCAGCCT-----GATAAACATAGGCA-------------------CATGA---------CTTCATTGTGTATAATTATACATTTTG-AC------CTGGACA-GAAT-CTCTACAAACTGTTACAGAA-GT------TTA-AT--GCTGATTTT--C----------AATTTCG-----TAAAA-------AG-GTGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-ATTA-CATGATA----GTGTCTA-ATACCATCAATG--TCATC---AGGTTCA-GC--ACCAG---AAGAACAAtttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|4 : tatA-GAG-AATACCATGTTA----CTGTCTG-ATATATTCAACT--TTATC---AGGTAAG-GC--TT--A---GAAAATAAAACA-----ggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|4 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtccA-----CCTGA------T-AAAG-------TTGAA-TATAT-CAGACAG----T-----AACATG-GTATTCTC-TAagt
gi|5 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtcctgttttattttctaagccttATTTCATCATATCAAATAATTAATTTCTGTTGATAAACTGTCTGCTT-----GACAGACGAAGGTT-------------------TACCA---------CGTCAATGCAAGT--TAAT-CA---GGCAC------TTTT-CGTGATT-ATGTATA-----------A----------TTATAC--AT----TTT--TACCTGGAACGAACTACGTT---TAAAATGAATTAAA-ATGAACTAGAAATTTTGGCA-----TGATA-------AA-TAA-AATACCATGgt
gi|6 : gatatattcacagtggtcgatgaataacatcaataagcactcgcgttcattaacagtggttgtcaaataccaTAACAATAAGACATGATACAATGTTAACAATGTATTTT--TTTG---TTTGATTT--GTTTCTGCTTGCTTA----TATAAAATGCATGAAAAGAA-AAACATTCAAGGAATA------AGA----AGTAGTTCATGTGTCGTGTACGATTATTTTGGAAGTGATTAACACAGCAAAGCTTGATCACGCCTGACATAAGCTGGGCTATGCATTAGGCATAAAGC
gi|7 : AACA-------TGA------T-GAAG-------ATGAT-AATAT-TAGACAT----T-----TACATG-GTATTCTCATTT-T-TAGACTGTTCGGC--------Tccagataaaaactataatttaaaatatagtaggaaaacaatca
gi|7 : cacA-------AATGAG-AATACCATGTAA----ATGTCTA-ATATTATCATCT--TCATC---ATGTTCG-GC--AT--G---AAAAAAACAAcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaa-----TAATA-------TA-GAG-AATACCATGTTAACTAGTGTCTA-ATATTATCAACT--TTATC---AGGTGAG-GCTTAG--G---AAAAAAAggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgCA-----CCTGA------T-AAAG-------TTGAT-AATAT-TAGACACTAGTT-----AACATG-GTATTCTC-TATAT-TAGACTGTTCGGCTGTGATTTTTATACGTTC--GCC---C-TTTCGGTA-TTTTgactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|8 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctTG-ATATTAT----T-T-TAG--TGTTTGAC--------TTAT---TTC--ATGAAAC--------A-TTTT---AAAAATTGACATAGTACAAAGCCCATAATATA-ATT--TTAGTC-TCTGAATT--G-------TTGCATACTTTTATAAAATACATGAAAAAAG-AAA-gtt
gi|9 : aatttgatGTCCT-ATATTATCAACT--TCATC---AGATTTG-GA--GC--G---AAAAA
gi|9 : AC----T-----AACATG-GTATTCTC-TAT-T-TAatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAGGACTTGGTAGAGCCTCTTCTTGTTTTTTTTTAAGCCTC
Unaligned ( gi|16 ): TTCGGCACAAAAAAAGCAAAGACTTGGCAGAGCCTCATCCT
Unaligned ( gi|17 ): GTTCGGGACGAAAAAAACAAGGACTCGGCAGAGCTTTGTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 2222222 11111 1111111 1111 1111111111 111111 1111111 1111111111 11 22222222 111 4444444444444444444 11 333 4444444444 2222 1 1 1 3333333333333333 222 1 3333333333333333333333
lowQualScore : 1 1 22 0 2 55555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 11111 8888888 8 0 66666 8888888 5 5 1 2222 1 5 2 66 888 5 7777777777 1 99999 111111 4 3333333 44 0 4 1111111111 3 4 888 88 44444444 444 5555555555555555555 7 44 33 4 666 2 7777777777 1111 0 0 0 0 7777777777777777 3 2 222 0 3 000 3 0 1 0 1111111111111111111111 1
lowQualScore : . . .. . . ..... ............................................................................................................................................. . ..... ....... . . ..... ....... . . . .... . . . .. ... . .......... . ..... ...... . ....... .. . . .......... . . ... .. ........ ... ................... . .. .. . ... . .......... .... . . . . ................ . . ... . . ... . . . . ...................... .
lowQualScore : 0 0 22 2 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 00000 6666666 0 8 77777 6666666 0 0 7 1111 2 0 2 99 888 0 0000000000 0 11111 555555 0 0000000 88 1 4 9999999999 6 0 999 33 22222222 000 4444444444444444444 3 55 88 2 555 5 5555555555 2222 2 0 0 5 5555555555555555 2 5 555 2 2 888 2 2 0 0 7777777777777777777777 0
consensus : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-T-TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
Reference ( family-1948 ) : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-T-TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
gi|1 : A-----------AT-GT------TTA-AT--GC----TTTGAT----------AATGTCAAAATATAAAAT------GG-CCCAAT-ATAAGTGTTGGCGCTTTGTAATATTGTTATAC-GAGCAATGCCGTAT--------GTTCACATAACATCACGTGATCATCTGTAAGTCCGTGC---C--GCTTAAAAATAAAGCAAAGTACCCGAACGTTCTGAAAGCCAGGCTTTAATCAATGTTCATACAC----TTTCCAAATGTGAGTGATATC--AT-TGTGG--CGTTTGGT--------TTAT---TTTCTGCG---TATTT---TT-TTTTTTAAAAAAATGACATAATACAATGTCCATGATATATGTTAGTTCG-T-TTT--TTTCAG------CTTGCATA----TACTAAATACGTTAAAAATG-AAA-ATCC-AGGAATATTATAAAGGTCACAGTAGTTCCTG-G-CGGGTATAATCATTTTGGCGGTGATCAACTCTGC-AAGCA---------------------GAACTATGTCTTTGGCAAAAAGC
gi|10 : CA-----CGTGA------T-AAAT-------TTTAG-ACTTT-AAGGTAC----T-----AACGTG-GTATTCTT-TAccgactaaaaaccatcaacaaatcaataaacatatacttgcaaaataccatc
gi|11 : tgtttggctaaaacaacaacaacactaacttgtcacttggctagtactcttttttttctacctTTCAAGGAATA----AAAGGT------AGTTCCTG-T-CGCGTATGATTATTATTTTGGTAATCAACACTGC-AA
gi|12 : CA-----CATAA------T-AAAG-------TTGTT-AGTGT-CAG---------------ACATG-ATATTCTagcttgatcacgacgacat
gi|13 : agactcggcagagcatcgtcctgtttttttctaactctAAACA-----CCACC------T-AAAG-------T-----AATAT-AAGACAC----T-----AAAATG-ATATTGTC-TGT-taat
gi|14 : gactcggcagagcctcgtactgtttttttt-----CCTGA------T-AATG-------TTTAG-AATTT-CAGGCAC----T-----AACATA-GTATTCTG-TAT-A-TAG--CATGCCAC--------TTAT---CTC--------C-TTA---CA-TTTT
gi|2 : ATTTGATGATGTCAATGAATTCATTTCTGTTCACAAACCACATGTCT-----GATAAACATAGGTT-------------------TATTA---------CGTTACTGAAAGT--TTAT-CA---GGTAC------GTG-ACG-GAAT-GTCTACA-----------AAAGT------TTC-AT--GC----TTT--C----------AATTTCA-----TAAAAT------AG-ACGAATTAGAAATATTAATA-----TGATA-------AA-GAG-TATACCATGTTA----GTGTCAA-CTATGATCAACT--TCATC---TGGTTCG-GC--AC--T---AAAAATAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTAGTCTC-TAT-G-TAG--CGTTTGGT--------TTAT---TTT--ACG---C-TTT---TATTTTTTTAAAAAAATGACGTAATACTTTGTCCACAGTACATAGT--TTTGACATTTGATTT--G-------TTGCATA----TATAAGATACATAAAAAAAACAAA-GTTAGATGAAT-T---AAAAGTTGCGCTAAT--------CGCTCACAA-TGCTTGGACCGCG-TAGACATAAT-AAGC----------------------AGGCTATGCCTTAGGCACAAAGCc
gi|3 : ttTTTATCATGGCAATGCATTCATTTCTCTTGGTAAATTGCCTGCCCTGCCCGATAAACATAGGTTTATCACGTCAATGCAAGTTTATCAAACACAAGATGTCATTGTG--T--ATATGTA---TACATTTTGAACTGGACG-AAATTATTTT-------------AA-CTCTTTTGTTA-ACTGGA----TTT--C----------AATATCA-----TAAAAG------AATATGAATTAAAAATATCGACA-----CGATA-------AA-GTC-ACTTCCATGGTT----GTATCAG-GTATCATCAGCT--TTATC---AGATTCA-GC--AC--G---AAAAGAAAAACA-----TC-GA------T-GAGG-------CTGTT-A
gi|4 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaaATCATGTCGGTGCATTTGGTTCTATTGATAAACTGCCAGCCT-----GATAAACATAGGCA-------------------CATGA---------CTTCATTGTGTATAATTATACATTTTG-AC------CTGGACA-GAAT-CTCTACAAACTGTTACAGAA-GT------TTA-AT--GCTGATTTT--C----------AATTTCG-----TAAAA-------AG-GTGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-ATTA-CATGATA----GTGTCTA-ATACCATCAATG--TCATC---AGGTTCA-GC--ACCAG---AAGAACAAtttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|4 : tatA-GAG-AATACCATGTTA----CTGTCTG-ATATATTCAACT--TTATC---AGGTAAG-GC--TT--A---GAAAATAAAACA-----ggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|4 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtccA-----CCTGA------T-AAAG-------TTGAA-TATAT-CAGACAG----T-----AACATG-GTATTCTC-TAagt
gi|5 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtcctgttttattttctaagccttATTTCATCATATCAAATAATTAATTTCTGTTGATAAACTGTCTGCTT-----GACAGACGAAGGTT-------------------TACCA---------CGTCAATGCAAGT--TAAT-CA---GGCAC------TTTT-CGTGATT-ATGTATA-----------A----------TTATAC--AT----TTT--TACCTGGAACGAACTACGTT---TAAAATGAATTAAA-ATGAACTAGAAATTTTGGCA-----TGATA-------AA-TAA-AATACCATGgt
gi|6 : gatatattcacagtggtcgatgaataacatcaataagcactcgcgttcattaacagtggttgtcaaataccaTAACAATAAGACATGATACAATGTTAACAATGTATTTT--TTTG---TTTGATTT--GTTTCTGCTTGCTTA----TATAAAATGCATGAAAAGAA-AAACATTCAAGGAATA------AGA----AGTAGTTCATGTGTCGTGTACGATTATTTTGGAAGTGATTAACACAGCAAAGCTTGATCACGCCTGACATAAGCTGGGCTATGCATTAGGCATAAAGC
gi|7 : AACA-------TGA------T-GAAG-------ATGAT-AATAT-TAGACAT----T-----TACATG-GTATTCTCATTT-T-TAGACTGTTCGGC--------Tccagataaaaactataatttaaaatatagtaggaaaacaatca
gi|7 : cacA-------AATGAG-AATACCATGTAA----ATGTCTA-ATATTATCATCT--TCATC---ATGTTCG-GC--AT--G---AAAAAAACAAcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaa-----TAATA-------TA-GAG-AATACCATGTTAACTAGTGTCTA-ATATTATCAACT--TTATC---AGGTGAG-GCTTAG--G---AAAAAAAggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgCA-----CCTGA------T-AAAG-------TTGAT-AATAT-TAGACACTAGTT-----AACATG-GTATTCTC-TATAT-TAGACTGTTCGGCTGTGATTTTTATACGTTC--GCC---C-TTTCGGTA-TTTTgactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|8 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctTG-ATATTAT----T-T-TAG--TGTTTGAC--------TTAT---TTC--ATGAAAC--------A-TTTT---AAAAATTGACATAGTACAAAGCCCATAATATA-ATT--TTAGTC-TCTGAATT--G-------TTGCATACTTTTATAAAATACATGAAAAAAG-AAA-gtt
gi|9 : aatttgatGTCCT-ATATTATCAACT--TCATC---AGATTTG-GA--GC--G---AAAAA
gi|9 : AC----T-----AACATG-GTATTCTC-TAT-T-TAatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
blockSeqs : T C CA T TGCCC TATCACGTCAATGCAAGTTTATCAAACACAAGATGTCATTGTGTATATGTATACATTTTGAACTGGACGAAATTATTTTAACTCTTTTGTTAACTGGATTTC T TT TGAATTA T . . T . T ACTA A . G . . . ACCAG T . . . . G . TAGTT . A AT AC TGTGATTT ACG GCCCTTTCGGTA T TA . T ACA G GTTTCTGC CTTT C C A TAAAAGTTGCGC T C TGT T A T A TTGATCACGCCTGACATAAGCT C
blockSeqs : C C TG T . CATGACTTCATTGTGTATAATTATACATTTTGACCTGGACAGAATCTCTACAAACTGTTACAGAAGTTTAATGCTGATTTTC A . T . . . . . T . A . C . . . TTAGG A . . . . T . T . . A AC . . ACGCTTTTAT . TT . T TC G G . . . G AAAAGGT T A T T A A . . T
blockSeqs : A AA T . TACCACGTCAATGCAAGTTAATCAGGCACTTTTCGTGATTATGTATAATTATACATTTTTACCTGGAACG T . G . . . . . T . T . C . . . ACT C . . . . G . T . . G . . . ATGAAACA A . A . G G . . . A AAGAAG . . . . . A .
blockSeqs : T . . . . . . . T . T . A . . . ACG T . . . . T . T . . T . . . CTTACA
blockSeqs : . . . . A . T . T . . . TTA A . . . . T . T . . T . .
blockSeqs : . . . T . T . T . . . ATG A . . . . A . T . . T
blockSeqs : . . C . T . . . GCG . . . . T . T . .
blockSeqs : . . . . T . T . .
blockSeqs : . . . . . . . .
blockSeqs : . .
blockSeqCons : ***** ***** ******* ** *** ACG******* ***** ****** ******* T* T********* T**
originalCons : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-T-TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
finalCons : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GCACG-------AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACACT---------AACATG-GTATTCTC-TATT--TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAGGACTTGGTAGAGCCTCTTCTTGTTTTTTTTTAAGCCTC
Unaligned ( gi|16 ): TTCGGCACAAAAAAAGCAAAGACTTGGCAGAGCCTCATCCT
Unaligned ( gi|17 ): GTTCGGGACGAAAAAAACAAGGACTCGGCAGAGCTTTGTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 22222 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333 2222222 11111 1111111 1111 1111111111 111111 1111111 1111111111 11 22222222 111 4444444444444444444 11 333 4444444444 2222 1 1 1 3333333333333333 222 1 3333333333333333333333
lowQualScore : 1 1 22 0 2 55555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 11111 8888888 8 0 66666 8888888 5 5 1 2222 1 5 2 66 888 5 7777777777 1 99999 111111 4 3333333 44 0 4 1111111111 3 4 888 88 44444444 444 5555555555555555555 7 44 33 4 666 2 7777777777 1111 0 0 0 0 7777777777777777 3 2 222 0 3 000 3 0 1 0 1111111111111111111111 1
lowQualScore : . . .. . . ..... ............................................................................................................................................. . ..... ....... . . ..... ....... . . . .... . . . .. ... . .......... . ..... ...... . ....... .. . . .......... . . ... .. ........ ... ................... . .. .. . ... . .......... .... . . . . ................ . . ... . . ... . . . . ...................... .
lowQualScore : 0 0 22 2 0 00000 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 00000 6666666 0 8 77777 6666666 0 0 7 1111 2 0 2 99 888 0 0000000000 0 11111 555555 0 0000000 88 1 4 9999999999 6 0 999 33 22222222 000 4444444444444444444 3 55 88 2 555 5 5555555555 2222 2 0 0 5 5555555555555555 2 5 555 2 2 888 2 2 0 0 7777777777777777777777 0
consensus : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-T-TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
Reference ( family-1948 ) : NNATTTNATCATGTCAATGNATTCGTTTCTGTTGATAAACCGCCTGCCT-----GATAAACATAGGTT-------------------TATCA---------CGTCATTGCGAGT--TTATGCA---NGCAC------CTGGACG-GAAT-ATCTACA-----------AA-GT------TTA-AC--GC----TTT--C----------AATTTCG-----TAAAAT------AG-ACGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-AATACCATGTTA----GTGTCTA-ATATCATCAACT--TCATC---AGGTTCG-GC--AC--G---AAAAANAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTATTCTC-TAT-T-TAG--CGTTCGGC--------TTAT---TTC--GCG---C-TTT---TA-TTTTTTAAAAAAATGACATAATACAATGTCCACAATATATATT--TTCG-C-TTTGATTT--G------CTTGCATA----TATAAAATACATGAAAAAAG-AAA-ATTCGAGGAATAT---AAAGGTCGCAGTAGTTCCTG-G-CGCGTACGATTATTTTGGCGGTGATCAACACNGC-AAGC----------------------GGGCTATGCCTTAGGCANAAAGC
gi|1 : A-----------AT-GT------TTA-AT--GC----TTTGAT----------AATGTCAAAATATAAAAT------GG-CCCAAT-ATAAGTGTTGGCGCTTTGTAATATTGTTATAC-GAGCAATGCCGTAT--------GTTCACATAACATCACGTGATCATCTGTAAGTCCGTGC---C--GCTTAAAAATAAAGCAAAGTACCCGAACGTTCTGAAAGCCAGGCTTTAATCAATGTTCATACAC----TTTCCAAATGTGAGTGATATC--AT-TGTGG--CGTTTGGT--------TTAT---TTTCTGCG---TATTT---TT-TTTTTTAAAAAAATGACATAATACAATGTCCATGATATATGTTAGTTCG-T-TTT--TTTCAG------CTTGCATA----TACTAAATACGTTAAAAATG-AAA-ATCC-AGGAATATTATAAAGGTCACAGTAGTTCCTG-G-CGGGTATAATCATTTTGGCGGTGATCAACTCTGC-AAGCA---------------------GAACTATGTCTTTGGCAAAAAGC
gi|10 : CA-----CGTGA------T-AAAT-------TTTAG-ACTTT-AAGGTAC----T-----AACGTG-GTATTCTT-TAccgactaaaaaccatcaacaaatcaataaacatatacttgcaaaataccatc
gi|11 : tgtttggctaaaacaacaacaacactaacttgtcacttggctagtactcttttttttctacctTTCAAGGAATA----AAAGGT------AGTTCCTG-T-CGCGTATGATTATTATTTTGGTAATCAACACTGC-AA
gi|12 : CA-----CATAA------T-AAAG-------TTGTT-AGTGT-CAG---------------ACATG-ATATTCTagcttgatcacgacgacat
gi|13 : agactcggcagagcatcgtcctgtttttttctaactctAAACA-----CCACC------T-AAAG-------T-----AATAT-AAGACAC----T-----AAAATG-ATATTGTC-TGT-taat
gi|14 : gactcggcagagcctcgtactgtttttttt-----CCTGA------T-AATG-------TTTAG-AATTT-CAGGCAC----T-----AACATA-GTATTCTG-TAT-A-TAG--CATGCCAC--------TTAT---CTC--------C-TTA---CA-TTTT
gi|2 : ATTTGATGATGTCAATGAATTCATTTCTGTTCACAAACCACATGTCT-----GATAAACATAGGTT-------------------TATTA---------CGTTACTGAAAGT--TTAT-CA---GGTAC------GTG-ACG-GAAT-GTCTACA-----------AAAGT------TTC-AT--GC----TTT--C----------AATTTCA-----TAAAAT------AG-ACGAATTAGAAATATTAATA-----TGATA-------AA-GAG-TATACCATGTTA----GTGTCAA-CTATGATCAACT--TCATC---TGGTTCG-GC--AC--T---AAAAATAAAACA-----CCTGA------T-AAAG-------TTGAT-AATAT-CAGACAC----T-----AACATG-GTAGTCTC-TAT-G-TAG--CGTTTGGT--------TTAT---TTT--ACG---C-TTT---TATTTTTTTAAAAAAATGACGTAATACTTTGTCCACAGTACATAGT--TTTGACATTTGATTT--G-------TTGCATA----TATAAGATACATAAAAAAAACAAA-GTTAGATGAAT-T---AAAAGTTGCGCTAAT--------CGCTCACAA-TGCTTGGACCGCG-TAGACATAAT-AAGC----------------------AGGCTATGCCTTAGGCACAAAGCc
gi|3 : ttTTTATCATGGCAATGCATTCATTTCTCTTGGTAAATTGCCTGCCCTGCCCGATAAACATAGGTTTATCACGTCAATGCAAGTTTATCAAACACAAGATGTCATTGTG--T--ATATGTA---TACATTTTGAACTGGACG-AAATTATTTT-------------AA-CTCTTTTGTTA-ACTGGA----TTT--C----------AATATCA-----TAAAAG------AATATGAATTAAAAATATCGACA-----CGATA-------AA-GTC-ACTTCCATGGTT----GTATCAG-GTATCATCAGCT--TTATC---AGATTCA-GC--AC--G---AAAAGAAAAACA-----TC-GA------T-GAGG-------CTGTT-A
gi|4 : gatatattaaatggactgcaatagatctgcttttaagcaagcacatagaaaccggtggttagagcatcagattagtaaATCATGTCGGTGCATTTGGTTCTATTGATAAACTGCCAGCCT-----GATAAACATAGGCA-------------------CATGA---------CTTCATTGTGTATAATTATACATTTTG-AC------CTGGACA-GAAT-CTCTACAAACTGTTACAGAA-GT------TTA-AT--GCTGATTTT--C----------AATTTCG-----TAAAA-------AG-GTGAATTAGAAATATTGGCA-----TGATA-------AA-GAG-ATTA-CATGATA----GTGTCTA-ATACCATCAATG--TCATC---AGGTTCA-GC--ACCAG---AAGAACAAtttctaagcctcaaatgataaagttgataatatcagataatattctggttcctttaat
gi|4 : tatA-GAG-AATACCATGTTA----CTGTCTG-ATATATTCAACT--TTATC---AGGTAAG-GC--TT--A---GAAAATAAAACA-----ggactcggaagagcttcgtcctgttttattttctaagccttacctgataaagttgaatatatcagacagtaacatggtattctctagt
gi|4 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtccA-----CCTGA------T-AAAG-------TTGAA-TATAT-CAGACAG----T-----AACATG-GTATTCTC-TAagt
gi|5 : tatatcatgtcggtgcatttggttctattgataaactgccagcctgataaacataggcacatgacttcattgtgtataattatacattttgacctggacagaatctctacaaactgttacagaagtttaatgctgattttcaatttcgtaaaaaggtgaattagaaatattggcatgataaagagattacatgatagtgtctaataccatcaatgtcatcaggttcagcaccagaagaacaaggactcggaagagcttcgtcctgttttattttctaagccttATTTCATCATATCAAATAATTAATTTCTGTTGATAAACTGTCTGCTT-----GACAGACGAAGGTT-------------------TACCA---------CGTCAATGCAAGT--TAAT-CA---GGCAC------TTTT-CGTGATT-ATGTATA-----------A----------TTATAC--AT----TTT--TACCTGGAACGAACTACGTT---TAAAATGAATTAAA-ATGAACTAGAAATTTTGGCA-----TGATA-------AA-TAA-AATACCATGgt
gi|6 : gatatattcacagtggtcgatgaataacatcaataagcactcgcgttcattaacagtggttgtcaaataccaTAACAATAAGACATGATACAATGTTAACAATGTATTTT--TTTG---TTTGATTT--GTTTCTGCTTGCTTA----TATAAAATGCATGAAAAGAA-AAACATTCAAGGAATA------AGA----AGTAGTTCATGTGTCGTGTACGATTATTTTGGAAGTGATTAACACAGCAAAGCTTGATCACGCCTGACATAAGCTGGGCTATGCATTAGGCATAAAGC
gi|7 : AACA-------TGA------T-GAAG-------ATGAT-AATAT-TAGACAT----T-----TACATG-GTATTCTCATTT-T-TAGACTGTTCGGC--------Tccagataaaaactataatttaaaatatagtaggaaaacaatca
gi|7 : cacA-------AATGAG-AATACCATGTAA----ATGTCTA-ATATTATCATCT--TCATC---ATGTTCG-GC--AT--G---AAAAAAACAAcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaa-----TAATA-------TA-GAG-AATACCATGTTAACTAGTGTCTA-ATATTATCAACT--TTATC---AGGTGAG-GCTTAG--G---AAAAAAAggactctgcagagcctcgtcctgtttttttcctaagcctcacctgataaagttgataatattagacactagttaacatggtattctctatattagactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|7 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgCA-----CCTGA------T-AAAG-------TTGAT-AATAT-TAGACACTAGTT-----AACATG-GTATTCTC-TATAT-TAGACTGTTCGGCTGTGATTTTTATACGTTC--GCC---C-TTTCGGTA-TTTTgactgttcggctgtgatttttatacgttcgccctttcggtattttgtt
gi|8 : cacagccgaacagtctaaaaatgagaataccatgtaaatgtctaatattatcatcttcatcatgttcggcatgaaaaaaacaaggactctgcagagcctcgtcctgtttttttcctaagcctTG-ATATTAT----T-T-TAG--TGTTTGAC--------TTAT---TTC--ATGAAAC--------A-TTTT---AAAAATTGACATAGTACAAAGCCCATAATATA-ATT--TTAGTC-TCTGAATT--G-------TTGCATACTTTTATAAAATACATGAAAAAAG-AAA-gtt
gi|9 : aatttgatGTCCT-ATATTATCAACT--TCATC---AGATTTG-GA--GC--G---AAAAA
gi|9 : AC----T-----AACATG-GTATTCTC-TAT-T-TAatcaaggactcagcagattgtcatcctgttcttttttctaagcctcacctgttaaactaacatggtattctctatttat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAAGGACTTGGTAGAGCCTCTTCTTGTTTTTTTTTAAGCCTC
Unaligned ( gi|16 ): TTCGGCACAAAAAAAGCAAAGACTTGGCAGAGCCTCATCCT
Unaligned ( gi|17 ): GTTCGGGACGAAAAAAACAAGGACTCGGCAGAGCTTTGTC