lowQualScore : 1111111111 11111111 222222222222 1111111111111111111 11111111111111111111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 33333 1 22 5555555555 1 2 22 1 44444444 1 000000000000 22 1 1 1 3333333 11 2222222222 22 1 1 22 2 5555555555555555555 33 111111 55555555555555555555555555555555555555555555555555555555 333333 11 1 1 4444 1 1 444444 22 11 44444 3333 2 444444 33 222 4 0000000000000000000000000000 1
lowQualScore : 33333 5 3 77 2222222222 4 6 6 5 6 7 77 4 5 55555555 6 5 4 2 555555555555 11 3 66 4 6 5 6 7 6 6 5 3 6 3333333 11 1 3 5 1 5 8888888888 3 4 1 22 6 2 6 7 2 1 5 99 3 4 3 2 77 3 0 6 5555555555555555555 6 4 55 4 3 4 1 6 1 6 111111 6 22222222222222222222222222222222222222222222222222222222 222222 66 5 2 0 5 3333 2 77 999 5 3 7 666666 55 33 4 22222 2 7777 6 0 777777 0 11 1 333 0 4444444444444444444444444444 999 5
lowQualScore : ..... . . .. .......... . . . . . . .. . . ........ . . . . ............ .. . .. . . . . . . . . . . ....... .. . . . . . .......... . . . .. . . . . . . . .. . . . . .. . . . ................... . . .. . . . . . . . ...... . ........................................................ ...... .. . . . . .... . .. ... . . . ...... .. .. . ..... . .... . . ...... . .. . ... . ............................ ... .
lowQualScore : 55555 5 0 55 0000000000 0 0 0 0 0 5 55 0 0 00000000 0 0 0 5 000000000000 00 0 55 0 0 0 0 0 0 0 0 0 7 2222222 88 0 2 6 0 4 0000000000 0 4 4 77 7 5 0 0 2 4 8 88 5 0 2 5 55 0 0 0 0000000000000000000 0 0 00 0 0 2 0 0 0 7 777777 7 00000000000000000000000000000000000000000000000000000000 555555 88 0 0 8 5 8888 2 55 222 0 2 0 222222 66 88 0 55555 2 0000 0 0 000000 2 33 0 333 0 3333333333333333333333333333 666 0
consensus : NATCACAATACCNCACCACNCCGCCAACAAGAGGTCTNTCGACAAGTTGTNTTAGTTAAATGACATCAACTGTAAAGTGCAAAAAATGCCTGTGTNTACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGNTTCCCAAACAGTTNCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTAATGTAGAAATNNNTTTGTNTNNTAGTATAATTAATTAGTAATATTGTTAGTATAATTAATNTAACACACTTGCATTCATTCTCCAGTTTGGGCTGTCTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATCACATGAATGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGCCCCAANTTACAGATCAAAACGA--TTTTACTACCTTCATTTCATTAATTCAAAACAGA------T---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCC-TTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGGTGTACTTCATTGTACTATAAGGATGCGTTTTGAAGCTACATTNAAGCACTGCACACTAATTATNAATNTAACCCCGTTTTCACTGGCTGCTGAANAATAACATAATTTGTTGAGAAACTTATAAGTAACTAAAGGACAATAACNCTGCCAAAAGTCANTNGAACTAAGCGCGACCCAAAAGTGGTTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTC-AACTG-A---G-GTGTAAACG-TGCAG-GTC--CATTTTAT-----ATT----CATACACGNTAGT-ATGCTACATTTATATACATCAATATATTTAAAATGAAACTCTTTAATACTGCTATTTTAAGGTGNTNNTACATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCTATAATCTGAAAAAATAATCACAGTTTAC--TTANAC-G--TAATAAATTCACGTTGGA-AGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACAAACA---AACAACG-ACAATTTT---ATT-GGCATAAAACAGCACTTGCGTGTTTATAGCC
Reference ( gi|1 ) : AATCACAATATCCCACCACACC--CAACAAGAGTT------A-AAGTTATTTTAATTAAATGACATCAATTGTAAAGGGCGAAACATGCC--TGTATATGTTGCAAAT--------ACTGAGACAAAAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACT------------CAAAATGTTGCTGTAGAAATTATTTTGTTTACTAGTATAATTAATTAGTAATATTATTAGTATAATTAATATGATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATATTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTCTATCAAGCATAACTATGACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACAA--TATTACTACCTTCATTTCATTAATTCAAAACATA------T---TTACATTGCATAGTAAGAAGCCTCCAACAGATAGTC-TTAGTTGGAATTGAACCAACATCTTCCATTTAAAAGATGGATGTACTTCATTGTACTATAAGGATGCATCTTGAAGCTAAATTTAAGCACTGCACACTAATTATAAATATAATCCTGTTTTCACTGGCTGCT--AAAA-AACATAATTTATTGAGAA-------------------ACAACAATACTG-AAAAAGTCATTTGAACTAAGCACGACCCAAAAGTGATTGCAAAATCAGTACATAAAAAAGTCAGTTTCCACTCCAATTG-ATTTGGGTATAAATAATACAA-ATCC-CATTTTATGAATAATTGCAGCATACACAATAGTCATGTTTCATGTGTATACATTAATATATTTAAAATGAAACTCTT---GACTACTATTTTAAGGTATTATTATAGCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTAGTTGCATGAAG---TC-ATAATCTGAAAAAATAATGACAGTTTAC--TTAAA-----TAATAAATTCACATT-AA-AGTATC-TAAAAACGTT-ATGGATAATTGATGCATTTCACA---AAAAAACATAGTAACAAACA---AACAA---ACAAT------A---GACATAAAGCAGCACTTGCCTGTTTATAGCC
gi|2 : ATCACAATACCAC-CCACCCC--CAACAAGAGGTCTCTCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCAAAA-ATGCC--TGTTTATGTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTAATGTAGAAAT
gi|3 : ggttatcaaatgccatgaaagATCACAATA--CCACC-CACCGCCAACAAGAGGTCTGTCGACAAGTTGTATTAGTTAAATGACATCAACTGTAAAGTGCAAAAAATGCCTGTGTATACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGATTCCCAAACAGTTACAaagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : gatatcaaatgccataaaagTTTGTGTTCTAGTATAATTAATTAGTAATATTGTTAGTATAATTAATATAACACACTTGCATTCATTCTCCAGTTTGGGCTGTCT-TTTATATGTTCAGCTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|3 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggTTTGTTTAATAGTATAATTAATTAGTAATATTATTAGTATAATTAATTTAATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|3 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngTAATTTTATCAGGCATAACTATTACATGAATGCTAAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|2 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaatTTTATCAGGCATAACTATCACATGAATGCTAAcagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaacACATGCCCCAAATTACAGATCAAAACAA--GTTTACTACCTTCATTTCATTAATTCAAAACATA------TAAATTGCATTGCATTGTAAGAAGCCTCCAACAGATATCC-GTAGTTGGAATTGAACCAACATCTTCCATCTTAAAGATGGATGTACGTCATTGTACTATAAGGATGCATCTTGAAGCTACATTTAAGCACTGCACACTAATTATAAATATAACCCTGTTTTCTATGGCTGCTGAAAAA-AAAAAAAATTGTTGAGAA-------------------ACAATAATTCTG-CAAAAGTCGTTTGAACTAAGCACCACCCAAAAGTGATcagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|3 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaACATGCCCCAAATTACAGATCAAAACAA--TTTTACTACCTTCATTT
gi|4 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaGCCCCAACTTACTGATCAAAA-----TATTTGTAC-----------TAATTCGTAACAGA------T---TTGCATTGCTTAGTAACAAGCCTCCAACAGATATCC-TTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACTATAAGGATGCGTTTTGAAGCTATATTAGAGCACTGCACACTAATTATCAATTTAATCCCG-TTTCACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAATTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACT-----------------TAAAC--TGCAGCATCCACATGTTAC-----ATT----TATATACATTA---ATGCTACATTTATATACATCAATATA-TTGAAATGAAACTCTTTAATACTGCTATTTTAAAGTGGTCGTACATCATGATTTACCAGTTGTGATACGGTGTAATTTAGTTTTGTTGCATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTATA-----TAATAAATTCATGTTGGA-AGTGTCATAAAAA-ATT--TGGATAAAGGACGCATTTCACACACAAAAAA-ATAATAACAAACA---AATAATGTGTAAC------G---CATATAA--CAGCACTTGCATGTTTATAGCC
gi|5 : cGCCCCAACTTGCTGATCAAAACAT--TTGTACTA------TTTCGT--------AACAGA------T---TTGCATTGCTTAGTAACAAGCCTCAAACAGATATCC-TTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACCATAAGGATGCGTTTTGAAGCTATATTACAGCACTGCACACTAATTATTAATTTAATCCCGTTTT-ACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAACTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGTACATAAAAAAGCCAGTTT-CACTTAAACTGCA---GCATGCACATGTTACA----------TTTAT-------------ATACATGA-----ATGCTACATTTATATACATCAATATA-TTAAAACGAAACTCTTTAATACTGCTATTTTAAAGTCGTCGTACATCATGATTTACAAGTTGTATTACTGTGTAATTTAGTTTTGTTGTATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTAAA-----TAATAAATTCATGTTGGA-AGTGTCATAAAAA--------AATAAAGGACGCATTTCACA---AAAAGA-ATAGTAACACATATTTTGTAA---A---------------GCATATAACAGCACTTGCATGTTTATAGC
gi|13 : cAACTTACAGGT---AATGAATTTTTACCATCTTCATTTCATGAATTCAAAACAGA------T---TTGCATTGCGTAGTAAGAAGCCTCTAACAGATATCC-TTAGTTGGGATTGAACCAACCTCTTCCat
gi|6 : AATTGCAAAT-AAAA------GTTTCT---TTTAT--CATTAATTAAAAACATACATGTAT---TTACATTGCATTGTAAGAAGCCTCCAACAGATATCC-GTAGTTGGAATTGAACCAACATCTTCCATCTTAAATATGGATGTACTTCATTGTACTATAAGGATGCATCTTGAAGCTACATTTAAGCACTGCACACTAATTATAAATATAACCCTGTTTTCACTGGCTGCTGAAAAA-AACATAATTTGTTTAGAA-------------------ACAATAATTCTG-CAAAAGTCATTTGAACTAAGCATGACTCAAAAGTGATTGCAAAACCAGCA---AA----------TTCCACTCTAATTG-ATTTGGGTATAAATAATGCAA-GTTG-TATTTTATGAATAATTGCAGCATGCACAGTAGTCATGTTGAATTTGTAGACATTAATATATTTAAAATGAAACTCTT---GACTACTATTTTAAGGTATTATTATATCATGACTTAACAGTTGTATT-CTGTGTGATTTAGTTTTGTTACATGAAG---CC-ATAATATGAAAAAATTATCACAGTTTA
gi|9 : tggcctattgTCTAACAGTTA-TCATTAGTT-----TGAACCAACATATTCCATCTTACAGACAGTTGTACTTCAATGTACAATAAGGATGCATTTT----------------ACTGCACACTAA
gi|8 : TATACATTAATAATGTTATATTTATACACATTAATATATTTAAAATGAAACTCTT---TACTGATATTTTAAGGCGTTAT-ATATCACGACTTACCAGTTGTATTACTGTGTAATTTAGATTTGTTGTATGAAG---AC-ATAATATGAAAAAATAATCAAAGTTTAT--TTAAATAGCGTAATAAATTCACAAT-GGTAATGTC-TAAAAAAGGTAATAAATAAGGGGTACATTTTGTA---AAAAAAcagtgacgtattccatgttatatatacgtccctgacactaaatataaatatcagtctgttttcaggttgttgca
gi|14 : tatttacatgactgTAATCGGAGAAAATAATCACAGTTTACATTTATACCG--TCATAAATTCACGTTGAA-AGTGTC-TGAAAAAGTT-ATGGATAAaaca
gi|11 : ACAGCAACAAACA---A-CGA---ATAATTTT---ATTTGGCATAAAACAGCACTTTCGTGGTTATAGC
gi|7 : acaACAAACA---AACAACAGACAATTTTTCTATTCGGCATAAAACAGCACTTGCGTGTTTATAGCCtaacacaaatataacaacagtgaaaacatgaaaataagattatcataagaaggagctacaaaaccaata
gi|10 : CATT------A---GGCATACAACAGCACTTGTGTGTTTATAGCCagcacaaatattacaaaagtgaaaacatgaaaataagattataagagaagtaaataaagttaataaatattggtttagtacaatttaacaattatcgtagttatatttttaattaaataatttactgccaatataagtctggtgccattattcattcttagttggaaggcaaaacatataaatttggataaattgttcattgtctttgtgcattgggaggcgataa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CACATATTCAGATAAAATAATGTACACTTGGTTTGTGGTGTTGAGGTACATCTCTATAGTGTAAGCTAGTACACTTTTCTGTTTGAAAAGAGCTCCAGGTTCAAGTCCTGGTGGGGATTTTGACAC
Unaligned ( gi|15 ): AGACATTATTCTAGCCTGTTTTTCATCACTGGATCAAACTCAAAATTATGCTACCATTCCTGAAATAAAC
Unaligned ( gi|16 ): TTACATATTTAAATACAGCATACACTTGGTGTTTGGGCACATCGCTATAGCGTAAGTTAACACA
Alignments
lowQualScore : 11111111111111111111111 1111111111111111111 111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 33333 111 111111 333333333333 33333 2222 111 22222222222222222222222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 1 2222222 111 11 2 0000000000000000000 1 555555555555555555555555555555555555555555555555555555555 222 1 22222 222222 1 11 444444 2 22222 111 1 111 5555555555555555555555
lowQualScore : 1 3 22222 111 6 0 1 7 444444 7 1 1 444444444444 2 333 1 22 33333 8888 999 0 33333333333333333333333 0 6 3 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 4 77777 1 44 1 7 1111111 111 1 0 2 0 3 44 1 1 0 33 1 0 7777777777777777777 666 5 1 1 1 2 3 0 2 444444444444444444444444444444444444444444444444444444444 77 999 8 0 22222 22 99 0 888888 0 11 1 777777 0 00000 1 2 777 0 111 1111111111111111111111 3
lowQualScore : . . ..... ... . . . . ...... . . . ............ . ... . .. ..... .... ... . ....................... . . . ................................................................................................ . . ..... . .. . . ....... ... . . . . . .. . . . .. . . ................... ... . . . . . . . . ......................................................... .. ... . . ..... .. .. . ...... . .. . ...... . ..... . . ... . ... ...................... .
lowQualScore : 0 7 33333 333 7 7 0 3 000000 3 0 0 000000000000 3 000 0 00 33333 3333 333 7 33333333333333333333333 7 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 44444 4 44 4 2 7777777 777 0 4 2 7 7 88 0 0 8 88 0 4 2222222222222222222 000 0 0 0 4 5 2 2 5 222222222222222222222222222222222222222222222222222222222 00 888 0 6 88888 44 88 8 000000 8 00 0 000000 4 00000 2 0 555 0 888 7777777777777777777777 7
consensus : NATCACAATACCAC-CCAC-CC--CAACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTGTATACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT--ATAATA-----------------------CACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCTTGAAGCTACATTTAAGCACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCTGAAAAATAACATAATTTGTTGAGAAACTTATAAGTAA-TAAAGGACAATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAATTG-ATTTGGGTATAAAC-A-TGCAA-ATC--C-ATNTTACGAATAATTGCAGCATATACATTAGTCA-TGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTAATACTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCCATAATCTGAAAAAATAATCACAGTTTAC--TTAAA---C-GTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAAC-G-A-CA-ATTTT---AT-T-GGCATANAACAGCACTTGCGTGTTTATAGCC
Reference ( family-1928 ) : NATCACAATACCNCACCACNCCGCCAACAAGAGGTCTNTCGACAAGTTGTNTTAGTTAAATGACATCAACTGTAAAGTGCAAAAAATGCCTGTGTNTACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGNTTCCCAAACAGTTNCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTAATGTAGAAATNNNTTTGTNTNNTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT--NTAACA-----------------------CACTTGCATTCATTCTCCAGTTTGGGCTGTCTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATCACATGAATGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGCCCCAANTTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGGTGTACTTCATTGTACTATAAGGATGCGTTTTGAAGCTACATTNAAGCACTGCACACTAATTATNAATNTAACCCCGTTTTCACTGGCTGCTGAANAATAACATAATTTGTTGAGAAACTTATAAGTAACTAAAGGACAATAACNCTGCCAAAAGTCANTNGAACTAAGCGCGACCCAAAAGTGGTTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTC-AACTG-A----GGTGTAAAC-G-TGCAG-GTC--C-ATTTTAT-----ATT----CATACACGNTAGT-A-TGCTACATTTATATACATCAATATATTTAAAATGAAACTCTTTAATACTGCTATTTTAAGGTGNTNNTACATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCTATAATCTGAAAAAATAATCACAGTTTAC--TTANA---C-GTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAAC-G-A-CA-ATTTT---AT-T-GGCATAAAACAGCACTTGCGTGTTTATAGCC
gi|1 : ATCACAATATCCCACCACACC--CAACAAGAGTT------A-AAGTTATTTTAATTAAATGACATCAATTGTAAAGGGCGAAACATGCCTGTATAT--GTTGCAAAT--------ACTGAGACAAAAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACT------------CAAAATGTTGCTGTAGAAATTATTTTGTTTACTAGTATAATTAATTAGTAATA-----TTAT----TAGTATAATTAAT--ATGATA-----------------------CACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATATTCAGCTAA
gi|1 : aTATTTCTATCAAGCATAACTATGACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACAA--TAT-TACTACCTTCATTTCATTAATTCAAAACA-----T-AT---TTACATTGCATAGTAAGAAGCCTCCAACAGATAGTCTTAGTTGGAATTGAACCAACATCTTCCATTTAAAAGATGGATGTACTTCATTGTACTATAAGGATGCATCTTGAAGCTAAATTTAAGCACTGCACACTAATTATAAATATAATCCTGTTTTCACTGGCTGCTAAAAAA---CATAATTTATTGAGAAAC----------------AACAATA---CTGA-AAAAGTCATTTGAACTAAGCACGACCCAAAAGTGATTGCAAAATCAGTACATAAAAAAGTCAGTTTCCACTCCAATTG-ATTTGGGTATAAAT-AATACAA-ATC--CCATTTTATGAATAATTGCAGCATACACAATAGTCA-TGTTTCATGTGTATACATTAATATATTTAAAATGAAACTCTTGA---CTACTATTTTAAGGTATTATTATAGCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTAGTTGCATGAAG---TC-ATAATCTGAAAAAATAATGACAGTTTAC--TTAAA------TAATAAATTCACATT-AAAGTATC-TAAAAACGTT-ATGGATAATTGATGCATTTCACA---AAAAAACATAGTAACA--AACAAACAA----A-CA-A---T---A----GACATAAAGCAGCACTTGCCTGTTTATAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttctatcaagcataactatgacatgaatgctaaatctgtataatacatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacatgccccaaattacagatcaaaacaatattactaccttcatttcattaattcaaaacatatttacattgcatagtaagaagcctccaacagatagtcttagttggaattgaaccaacatcttccatttaaaagatggatgtacttcattgtactataaggatgcatcttgaagctaaatttaagcactgcacactaattataaatataatcctgttttcactggctgctaaaaaacataatttattgagaaacaacaatactgaaaaagtcatttgaactaagcacgacccaaaagtgattgcaaaatcagtacataaaaaagtcagtttccactccaattgatttgggtataaataatacaaatcccattttatgaataattgcagcatacacaatagtcatgtttcatgtgtatacattaatatatttaaaatgaaactcttgactactattttaaggtattattatagcatgacttaccagttgtattactgtgtaatttagtttagttgcatgaagtcataatctgaaaaaataatgacagtttacttaaataataaattcacattaaagtatctaaaaacgttatggataattgatgcatttcacaaaaaaacatagtaacaaacaaacaaacaatagacataaagcagcacttgcctgtttatagcc
gi|10 : aatcacaatatcccaccacacccaacaagagttaaagttattttaattaaatgacatcaattgtaaagggcgaaacatgcctgtatatgttgcaaatactgagacaaaaaatagtttcccaaacagttccaaaccagttgggactcaaaatgttgctgtagaaattattttgtttactagtataattaattagtaatattattagtataattaatatgatacacttgcattcattctccagtttgggctgtttctttatatattcagctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAC-A-A-CT-ATTTC---AT-TAGGCATACAACAGCACTTGTGTGTTTATAGCC
gi|11 : tAACAGCAACAAACAAC-G-AATA-ATTTT---AT-TTGGCATAAAACAGCACTTTCGTGGTTATAGCaacacaaatattacagcagtatagtgaaaacatgaaaataagactatcagagaagtaaataaagtgaataaagtttggttttatacattgcattcaaaataatcataa
gi|13 : acAACTTACAGGT---AATGAATTTT-TACCATCTTCATTTCATGAATTCAAAACA-----G-AT---TTGCATTGCGTAGTAAGAAGCCTCTAACAGATATCCTTAGTTGGGATTGAACCAACCTCTTCCtaacacaaatataacaacagtgaaaacatgaaaataagattatcataagaaggagctacaaaaccaata
gi|14 : TAATCGGAGAAAATAATCACAGTTTACATTTATA---CCGTCATAAATTCACGTTGAAAGTGTC-TGAAAAAGTT-ATGGATAA
gi|2 : ATCACAATACCAC-CCACCCC--CAACAAGAGGTCTCTCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCAAAAA-TGCCTGT--TTATGTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTAATGTAGAAAT
gi|2 : ggttatcaaatgccatgaaagTTTGTGTTCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT--ATAACA-----------------------CACTTGCATTCATTCTCCAGTTTGGGCTGTCT-TTTATATGTTCAGCTAAaagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggTAACTTTATCAGGCATAACTATCACATGAATGCTAAaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacactACATGCCCCAAATTACAGATCAAAACAA--GTT-TACTACCTTCATTTCATTAATTCAAAACA-----T-ATAAATTGCATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAAGATGGATGTACGTCATTGTACTATAAGGATGCATCTTGAAGCTACATTTAAGCACTGCACACTAATTATAAATATAACCCTGTTTTCTATGGCTGCTGAAAAA-AAAAAAAATTGTTGAGAA-------------------ACAATAATTCTG-CAAAAGTCGTTTGAACTAAGCACCACCCAAAAGTGATcagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|3 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaATCACAATACCAC-CCAC--CGCCAACAAGAGGTCTGTCGACAAGTTGTATTAGTTAAATGACATCAACTGTAAAGTGCAAAAAATGCCTGTGTATACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGATTCCCAAACAGTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTTTAATAGTATAATTAATTAGTAATATTATTAGTATAATTAATTTAATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCT
gi|3 : gatatcaaatgccataaaagTAATTTTATCAGGCATAACTATTACATGAATGCTAAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|3 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaatACATGCCCCAAATTACAGATCAAAACAA--TTT-TACTACCTTCATTTcagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|4 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaGCCCCAACTTACTGATCAAAAT-A--TTTGTACTA--------------ATTCGTAACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACTATAAGGATGCGTTTTGAAGCTATATTAGAGCACTGCACACTAATTATCAATTTAATCCCG-TTTCACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAATTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACT-----------------TAAAC---TGCAGCATCCAC-ATGTTAC-----ATT----TATATACATTA---A-TGCTACATTTATATACATCAATATA-TTGAAATGAAACTCTTTAATACTGCTATTTTAAAGTGGTCGTACATCATGATTTACCAGTTGTGATACGGTGTAATTTAGTTTTGTTGCATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTATA------TAATAAATTCATGTTGGAAGTGTCATAAAAAA-TT--TGGATAAAGGACGCATTTCACACACAAAAAA-ATAATAACA--AACAAATAAT-GTG-TA-AC------------GCATATAACAGCACTTGCATGTTTATAGCC
gi|5 : cGCCCCAACTTGCTGATCAAAAC-A--TTTGTACT------ATTTCGT--------AACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCAAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACCATAAGGATGCGTTTTGAAGCTATATTACAGCACTGCACACTAATTATTAATTTAATCCCGTTTT-ACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAACTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGTACATAAAAAAGCCAGTTT-CACTTAAACTGCA----G-------C-A-TGCA-------C-ATGTTAC-----ATT----TATATACATGA---A-TGCTACATTTATATACATCAATATA-TTAAAACGAAACTCTTTAATACTGCTATTTTAAAGTCGTCGTACATCATGATTTACAAGTTGTATTACTGTGTAATTTAGTTTTGTTGTATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTAAA------TAATAAATTCATGTTGGAAGTGTCATAAAAAA--------ATAAAGGACGCATTTCACA---AAAAGA-ATAGTAAC----------------A-CATATTTT---GTAA-AGCATATAACAGCACTTGCATGTTTATAGC
gi|6 : cAATTGCAAAT-AAAA--G--TTT------CTTTTAT--CATTAATTAAAAACATACATGTAT---TTACATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAATATGGATGTACTTCATTGTACTATAAGGATGCATCTTGAAGCTACATTTAAGCACTGCACACTAATTATAAATATAACCCTGTTTTCACTGGCTGCTGAAAAA-AACATAATTTGTTTAGAA-------------------ACAATAATTCTG-CAAAAGTCATTTGAACTAAGCATGACTCAAAAGTGATTGCAAAACCAGCA---AA----------TTCCACTCTAATTG-ATTTGGGTATAAATAA-TGCAA-GTTG-T-ATTTTATGAATAATTGCAGCATGCACAGTAGTCA-TGTTGAATTTGTAGACATTAATATATTTAAAATGAAACTCTT---GACTACTATTTTAAGGTATTATTATATCATGACTTAACAGTTGTATT-CTGTGTGATTTAGTTTTGTTACATGAAG----CCATAATATGAAAAAATTATCACAGTTTAat
gi|7 : tggcctattgACA--AACAAACAACAG-A-CA-ATTTTTCTAT-TCGGCATAAAACAGCACTTGCGTGTTTATAGCC
gi|8 : TATACATTAAT-AATGTTATATTTATACACATTAATATATTTAAAATGAAACTCTTTA---CTGATATTTTAAGGCGTTA-TATATCACGACTTACCAGTTGTATTACTGTGTAATTTAGATTTGTTGTATGAAGA----CATAATATGAAAAAATAATCAAAGTTTAT--TTAAATAGC-GTAATAAATTCACAATGGTAATGTC-TAAAAAAGGTAATAAATAAGGGGTACATTTTGTA---AAAAAA-Aagcacaaatattacaaaagtgaaaacatgaaaataagattataagagaagtaaataaagttaataaatattggtttagtacaatttaacaattatcgtagttatatttttaattaaataatttactgccaatataagtctggtgccattattcattcttagttggaaggcaaaacatataaatttggataaattgttcattgtctttgtgcattgggaggcgataa
gi|9 : tatttacatgactgTCTAACAGTTATCATTAGTT-----TGAACCAACATATTCCATCTTACAGACAGTTGTACTTCAATGTACAATAAGGATGCATTTT----------------ACTGCACACTAAaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACATATTCAGATAAAATAATGTACACTTGGTTTGTGGTGTTGAGGTACATCTCTATAGTGTAAGCTAGTACACTTTTCTGTTTGAAAAGAGCTCCAGGTTCAAGTCCTGGTGGGGATTTTGACAC
Unaligned ( gi|15 ): AGACATTATTCTAGCCTGTTTTTCATCACTGGATCAAACTCAAAATTATGCTACCATTCCTGAAATAAAC
Unaligned ( gi|16 ): TTACATATTTAAATACAGCATACACTTGGTGTTTGGGCACATCGCTATAGCGTAAGTTAACACA
Alignments
lowQualScore : 1111111111111111111111111111 1111111111111111111
lowQualScore : 1 111 1 2 1 33 333333333333 33333 2222 1111111111111111111111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 11111 1 2222222 111 4444444444444444 22222222 2 1111111111111111111 1 66666666666666666666666666 22222 2222 111 1 2222 3333 1 11 33333 2 22222 111 1 111 5555555555555555555555
lowQualScore : 3 666 3 6 6 6 6 2 3 00 7 444444444444 1 1 1 33333 8888 9999999999999999999999999999 6 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 1 4 77777 1 44 1 7 1111111 111 1 0 0 0 4444444444444444 44444444 6 2 6 0 2 99 0 0 5555555555555555555 666 5 1 0 1 2 3 0 2 1 66666666666666666666666666 1 77777 3333 1 888 0 7777 22 99 0 1111 0 11 8 99999 0 00000 1 2 777 0 111 1111111111111111111111 1
lowQualScore : . ... . . . . . . . .. . ............ . . . ..... .... ............................ . . ............................................................................. . . ..... . .. . . ....... ... . . . . ................ ........ . . . . . .. . . ................... ... . . . . . . . . . .......................... . ..... .... . ... . .... .. .. . .... . .. . ..... . ..... . . ... . ... ...................... .
lowQualScore : 3 777 3 7 7 7 7 0 7 33 3 000000000000 0 0 0 33333 3333 7777777777777777777777777777 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 44444 4 44 4 2 7777777 777 0 4 3 7 2222222222222222 22222222 7 2 7 7 5 99 6 4 0000000000000000000 000 0 4 6 4 5 2 2 5 0 55555555555555555555555555 0 00000 0000 0 888 6 0000 00 44 8 0000 8 00 0 00000 4 00000 2 0 555 0 888 7777777777777777777777 0
consensus : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTNTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTATATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCTGAAAAATAACATAATTTGTTGAGAAACTTATAAGTAA-TAAAGGACAATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAACTGATTTGGGTATNAGCAATGCAAGT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTAANACTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAAC-G-A-CA-ATTTT---AT-T-GGCATANAACAGCACTTGCGTGTTTATAGCC
Reference ( family-1928 ) : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTGTATACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTACATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCTGAAAAATAACATAATTTGTTGAGAAACTTATAAGTAA-TAAAGGACAATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAATTGATTTGGGTATAAAC-ATGCAAAT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTAATACTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAAC-G-A-CA-ATTTT---AT-T-GGCATANAACAGCACTTGCGTGTTTATAGCC
gi|1 : ATCACAATATCCCACCACAC-CC-AACAAGAG---T-T--A-AAGTTATTTTAATTAAATGACATCAATTGTAAAGGGCGAAACATGCCTGTATAT--GTTGCAAAT--------ACTGAGACAAAAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACT------------CAAAATGTTGCTGTAGAAATTATTTTGTTTACTAGTATAATTAATTAGTAATA-----TTAT----TAGTATAATTAAT-----ATG--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATATTCAGCTAA
gi|1 : aTATTTCTATCAAGCATAACTATGACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACAA--TAT-TACTACCTTCATTTCATTAATTCAAAACA-----T-AT---TTACATTGCATAGTAAGAAGCCTCCAACAGATAGTCTTAGTTGGAATTGAACCAACATCTTCCATTTAAAAGATGGATGTACTTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTAAATTTAAG-CACTGCACACTAATTATAAATATAATCCTGTTTTCACTGGCTGCTAAAAAA---CATAATTTATTGAGAAAC----------------AACAATA---CTGA-AAAAGTCATTTGAACTAAGCACGACCCAAAAGTGATTGCAAAATCAGTACATAAAAAAGTCAGTTTCCACTCCAATTGATTTGGGTATAAATAATACAAATCC-CATTTTATGAATAATTGCAGCATACACAATAGTCATGTTTCATGTGTATACATTAATATATTTAAAATGAAACTCTT---GACTACTATTTTAAGGTATTATTATAGCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTAGTTGCATGAAG----TCATAATCTGAAAAAATAATGACAGTTTAC--TTA-AA-----TAATAAATTCACATT-AAAGTATC-TAAAAACGTT-ATGGATAATTGATGCATTTCACA---AAAAAACATAGTAACA--AACAAACAA----A-CA-A---T---A----GACATAAAGCAGCACTTGCCTGTTTATAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttctatcaagcataactatgacatgaatgctaaatctgtataatacatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacatgccccaaattacagatcaaaacaatattactaccttcatttcattaattcaaaacatatttacattgcatagtaagaagcctccaacagatagtcttagttggaattgaaccaacatcttccatttaaaagatggatgtacttcattgtactataaggatgcatcttgaagctaaatttaagcactgcacactaattataaatataatcctgttttcactggctgctaaaaaacataatttattgagaaacaacaatactgaaaaagtcatttgaactaagcacgacccaaaagtgattgcaaaatcagtacataaaaaagtcagtttccactccaattgatttgggtataaataatacaaatcccattttatgaataattgcagcatacacaatagtcatgtttcatgtgtatacattaatatatttaaaatgaaactcttgactactattttaaggtattattatagcatgacttaccagttgtattactgtgtaatttagtttagttgcatgaagtcataatctgaaaaaataatgacagtttacttaaataataaattcacattaaagtatctaaaaacgttatggataattgatgcatttcacaaaaaaacatagtaacaaacaaacaaacaatagacataaagcagcacttgcctgtttatagcc
gi|10 : aatcacaatatcccaccacacccaacaagagttaaagttattttaattaaatgacatcaattgtaaagggcgaaacatgcctgtatatgttgcaaatactgagacaaaaaatagtttcccaaacagttccaaaccagttgggactcaaaatgttgctgtagaaattattttgtttactagtataattaattagtaatattattagtataattaatatgatacacttgcattcattctccagtttgggctgtttctttatatattcagctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAC-A-A-CT-ATTTC---AT-TAGGCATACAACAGCACTTGTGTGTTTATAGCC
gi|11 : tAACAGCAACAAACAAC-G-AATA-ATTTT---AT-TTGGCATAAAACAGCACTTTCGTGGTTATAGCaacacaaatattacagcagtatagtgaaaacatgaaaataagactatcagagaagtaaataaagtgaataaagtttggttttatacattgcattcaaaataatcataa
gi|13 : acAACTTACAGGT---AATGAATTTT-TACCATCTTCATTTCATGAATTCAAAACA-----G-AT---TTGCATTGCGTAGTAAGAAGCCTCTAACAGATATCCTTAGTTGGGATTGAACCAACCTCTTCCtaacacaaatataacaacagtgaaaacatgaaaataagattatcataagaaggagctacaaaaccaata
gi|14 : TAATCGGAGAAAATAATCACAGTTTACATTTATAC---CGTCATAAATTCACGTTGAAAGTGTC-TGAAAAAGTT-ATGGATAA
gi|2 : ATCACAATACCAC-CCAC-C-CCCAACAAGAGGTCTCTCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGC-AAAAATGCCTGTTTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTAATGTAGAAAT
gi|2 : ggttatcaaatgccatgaaagTTTGTGTTCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ACACACTTGCATTCATTCTCCAGTTTGGGCTGTCT-TTTATATGTTCAGCTAAaagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggTAACTTTATCAGGCATAACTATCACATGAATGCTAAaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacactACATGCCCCAAATTACAGATCAAAACAA--GTT-TACTACCTTCATTTCATTAATTCAAAACA-----T-ATAAATTGCATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAAGATGGATGTACGTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTACATTTAAG-CACTGCACACTAATTATAAATATAACCCTGTTTTCTATGGCTGCTGAAAAA-AAAAAAAATTGTTGAGAA-------------------ACAATAATTCTG-CAAAAGTCGTTTGAACTAAGCACCACCCAAAAGTGATcagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|3 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaATCACAATACCAC-CCAC-CGCC-AACAAGAGGTCTGTCGACAAGTTGTATTAGTTAAATGACATCAACTGTAAAGTGCAAAAAATGCCTGTGTATACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGATTCCCAAACAGTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTTTAATAGTATAATTAATTAGTAATATTATTAGTATAATTAATTTAATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCT
gi|3 : gatatcaaatgccataaaagTAATTTTATCAGGCATAACTATTACATGAATGCTAAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|3 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaatACATGCCCCAAATTACAGATCAAAACAA--TTT-TACTACCTTCATTTcagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|4 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaGCCCCAACTTACTGATCAAAAT-A--TTTGTACTA--------------ATTCGTAACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACTATAAGGATGCGTTT----------------TGA--------A-GCTATATTAGAG-CACTGCACACTAATTATCAATTTAATCCCG-TTTCACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAATTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTTAAACTG----------CAGC-ATCCA------CATGTTAC-----ATT----TATATACATTA---ATGCTACATTTATATACATCAATATA-TTGAAATGAAACTCTTTAATACTGCTATTTTAAAGTGGTCGTACATCATGATTTACCAGTTGTGATACGGTGTAATTTAGTTTTGTTGCATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTA-TA-----TAATAAATTCATGTTGGAAGTGTCATAAAAAA-TT--TGGATAAAGGACGCATTTCACACACAAAAAA-ATAATAACA--AACAAATAAT-GTG-TA-AC------------GCATATAACAGCACTTGCATGTTTATAGCC
gi|5 : cGCCCCAACTTGCTGATCAAAAC-A--TTTGTACT------ATTTCGT--------AACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCAAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACCATAAGGATGCGTTT----------------TGA--------A-GCTATATTACAG-CACTGCACACTAATTATTAATTTAATCCCGTTTT-ACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAACTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGTACATAAAAAAGCCAGTTT-CACTTAAACTG----------CAGC-ATGCA------CATGTTAC-----ATT----TATATACATGA---ATGCTACATTTATATACATCAATATA-TTAAAACGAAACTCTTTAATACTGCTATTTTAAAGTCGTCGTACATCATGATTTACAAGTTGTATTACTGTGTAATTTAGTTTTGTTGTATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTA-AA-----TAATAAATTCATGTTGGAAGTGTCATAAAAAA--------ATAAAGGACGCATTTCACA---AAAAGA-ATAGTAAC----------------A-CATATTTT---GTAA-AGCATATAACAGCACTTGCATGTTTATAGC
gi|6 : cAATTGCAAAT-AAAA--G--TTT------CTTTTAT--CATTAATTAAAAACATACATGTAT---TTACATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAATATGGATGTACTTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTACATTTAAG-CACTGCACACTAATTATAAATATAACCCTGTTTTCACTGGCTGCTGAAAAA-AACATAATTTGTTTAGAA-------------------ACAATAATTCTG-CAAAAGTCATTTGAACTAAGCATGACTCAAAAGTGATTGCAAAACCAGCA---AA----------TTCCACTCTAATTGATTTGGGTATAAATAATGCAAGT-TGTATTTTATGAATAATTGCAGCATGCACAGTAGTCATGTTGAATTTGTAGACATTAATATATTTAAAATGAAACTCTT---GACTACTATTTTAAGGTATTATTATATCATGACTTAACAGTTGTATT-CTGTGTGATTTAGTTTTGTTACATGAAG----CCATAATATGAAAAAATTATCACAGTTTAat
gi|7 : tggcctattgACA--AACAAACAACAG-A-CA-ATTTTTCTAT-TCGGCATAAAACAGCACTTGCGTGTTTATAGCC
gi|8 : TATACATTAATAATGTTATATTTATACACATTAATATATTTAAAATGAAACTCTTTA---CTGATATTTTAAGGCGTTA-TATATCACGACTTACCAGTTGTATTACTGTGTAATTTAGATTTGTTGTATGAAGA----CATAATATGAAAAAATAATCAAAGTTTAT--TTA-AATAGCGTAATAAATTCACAATGGTAATGTC-TAAAAAAGGTAATAAATAAGGGGTACATTTTGTA---AAAAAA-Aagcacaaatattacaaaagtgaaaacatgaaaataagattataagagaagtaaataaagttaataaatattggtttagtacaatttaacaattatcgtagttatatttttaattaaataatttactgccaatataagtctggtgccattattcattcttagttggaaggcaaaacatataaatttggataaattgttcattgtctttgtgcattgggaggcgataa
gi|9 : tatttacatgactgTCTAACAGTTATCATTAGTT-----TGAACCAACATATTCCATCTTACAGACAGTTGTACTTCAATGTACAATAAGGATGCATTTTACTGCACACTAACAGTGACGTATTCCATGTTATATATACGTCCCTG-ACACTAAATATAAATATCAGTCTGTTTTCA--GGTTGTTGaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACATATTCAGATAAAATAATGTACACTTGGTTTGTGGTGTTGAGGTACATCTCTATAGTGTAAGCTAGTACACTTTTCTGTTTGAAAAGAGCTCCAGGTTCAAGTCCTGGTGGGGATTTTGACAC
Unaligned ( gi|15 ): AGACATTATTCTAGCCTGTTTTTCATCACTGGATCAAACTCAAAATTATGCTACCATTCCTGAAATAAAC
Unaligned ( gi|16 ): TTACATATTTAAATACAGCATACACTTGGTGTTTGGGCACATCGCTATAGCGTAAGTTAACACA
Alignments
lowQualScore : 1111111111111111111111111111 1111111111111111111
lowQualScore : 1 111 1 2 1 11 333333333333 33333 2222 1111111111111111111111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 11111 1 2222222 111 4444444444444444 22222222 2 1111111111111111111 1 55555555555555555555555555 22222 2222 111 1 2222 3333 1 11 33333 2 22222 111 1 111 5555555555555555555555
lowQualScore : 3 666 3 6 6 6 6 2 1 88 7 444444444444 1 1 1 33333 8888 9999999999999999999999999999 6 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 1 4 77777 1 44 1 7 1111111 111 1 0 0 0 4444444444444444 44444444 6 0 6 0 2 99 0 0 5555555555555555555 666 5 1 0 1 2 3 0 2 1 99999999999999999999999999 1 77777 3333 1 888 0 5555 22 99 0 1111 0 11 8 99999 0 00000 1 2 777 0 111 1111111111111111111111 1
lowQualScore : . ... . . . . . . . .. . ............ . . . ..... .... ............................ . . ............................................................................. . . ..... . .. . . ....... ... . . . . ................ ........ . . . . . .. . . ................... ... . . . . . . . . . .......................... . ..... .... . ... . .... .. .. . .... . .. . ..... . ..... . . ... . ... ...................... .
lowQualScore : 3 777 3 7 7 7 7 0 0 33 3 000000000000 0 0 0 33333 3333 7777777777777777777777777777 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 44444 4 44 4 2 7777777 777 0 4 3 7 2222222222222222 22222222 7 3 7 7 5 99 6 4 0000000000000000000 000 0 4 6 4 5 2 2 5 0 22222222222222222222222222 0 00000 0000 0 888 6 4444 00 44 8 0000 8 00 0 00000 4 00000 2 0 555 0 888 7777777777777777777777 0
consensus : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTNTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTATATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCTGAAAAATAACATAATTTGTTGAGAAACTTATAAGTAA-TAAAGGACAATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAACTGATTTGGGTATNAGCAATGCAAGT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTAANACTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAAC-G-A-CA-ATTTT---AT-T-GGCATANAACAGCACTTGCGTGTTTATAGCC
Reference ( family-1928 ) : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTNTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTATATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCTGAAAAATAACATAATTTGTTGAGAAACTTATAAGTAA-TAAAGGACAATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAACTGATTTGGGTATNAGCAATGCAAGT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTAANACTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAAC-G-A-CA-ATTTT---AT-T-GGCATANAACAGCACTTGCGTGTTTATAGCC
gi|1 : ATCACAATATCCCACCACAC-CC-AACAAGAG---T-T--A-AAGTTATTTTAATTAAATGACATCAATTGTAAAGGGCGAAACATGCCTGTATAT--GTTGCAAAT--------ACTGAGACAAAAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACT------------CAAAATGTTGCTGTAGAAATTATTTTGTTTACTAGTATAATTAATTAGTAATA-----TTAT----TAGTATAATTAAT-----ATG--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATATTCAGCTAA
gi|1 : aTATTTCTATCAAGCATAACTATGACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACAA--TAT-TACTACCTTCATTTCATTAATTCAAAACA-----T-AT---TTACATTGCATAGTAAGAAGCCTCCAACAGATAGTCTTAGTTGGAATTGAACCAACATCTTCCATTTAAAAGATGGATGTACTTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTAAATTTAAG-CACTGCACACTAATTATAAATATAATCCTGTTTTCACTGGCTGCTAAAAAA---CATAATTTATTGAGAAAC----------------AACAATA---CTGA-AAAAGTCATTTGAACTAAGCACGACCCAAAAGTGATTGCAAAATCAGTACATAAAAAAGTCAGTTTCCACTCCAATTGATTTGGGTATAAATAATACAAATCC-CATTTTATGAATAATTGCAGCATACACAATAGTCATGTTTCATGTGTATACATTAATATATTTAAAATGAAACTCTT---GACTACTATTTTAAGGTATTATTATAGCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTAGTTGCATGAAG----TCATAATCTGAAAAAATAATGACAGTTTAC--TTA-AA-----TAATAAATTCACATT-AAAGTATC-TAAAAACGTT-ATGGATAATTGATGCATTTCACA---AAAAAACATAGTAACA--AACAAACAA----A-CA-A---T---A----GACATAAAGCAGCACTTGCCTGTTTATAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttctatcaagcataactatgacatgaatgctaaatctgtataatacatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacatgccccaaattacagatcaaaacaatattactaccttcatttcattaattcaaaacatatttacattgcatagtaagaagcctccaacagatagtcttagttggaattgaaccaacatcttccatttaaaagatggatgtacttcattgtactataaggatgcatcttgaagctaaatttaagcactgcacactaattataaatataatcctgttttcactggctgctaaaaaacataatttattgagaaacaacaatactgaaaaagtcatttgaactaagcacgacccaaaagtgattgcaaaatcagtacataaaaaagtcagtttccactccaattgatttgggtataaataatacaaatcccattttatgaataattgcagcatacacaatagtcatgtttcatgtgtatacattaatatatttaaaatgaaactcttgactactattttaaggtattattatagcatgacttaccagttgtattactgtgtaatttagtttagttgcatgaagtcataatctgaaaaaataatgacagtttacttaaataataaattcacattaaagtatctaaaaacgttatggataattgatgcatttcacaaaaaaacatagtaacaaacaaacaaacaatagacataaagcagcacttgcctgtttatagcc
gi|10 : aatcacaatatcccaccacacccaacaagagttaaagttattttaattaaatgacatcaattgtaaagggcgaaacatgcctgtatatgttgcaaatactgagacaaaaaatagtttcccaaacagttccaaaccagttgggactcaaaatgttgctgtagaaattattttgtttactagtataattaattagtaatattattagtataattaatatgatacacttgcattcattctccagtttgggctgtttctttatatattcagctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAC-A-A-CT-ATTTC---AT-TAGGCATACAACAGCACTTGTGTGTTTATAGCC
gi|11 : tAACAGCAACAAACAAC-G-AATA-ATTTT---AT-TTGGCATAAAACAGCACTTTCGTGGTTATAGCaacacaaatattacagcagtatagtgaaaacatgaaaataagactatcagagaagtaaataaagtgaataaagtttggttttatacattgcattcaaaataatcataa
gi|13 : acAACTTACAGGT---AATGAATTTT-TACCATCTTCATTTCATGAATTCAAAACA-----G-AT---TTGCATTGCGTAGTAAGAAGCCTCTAACAGATATCCTTAGTTGGGATTGAACCAACCTCTTCCtaacacaaatataacaacagtgaaaacatgaaaataagattatcataagaaggagctacaaaaccaata
gi|14 : TAATCGGAGAAAATAATCACAGTTTACATTTATAC---CGTCATAAATTCACGTTGAAAGTGTC-TGAAAAAGTT-ATGGATAA
gi|2 : ATCACAATACCAC-CCAC-C-CCCAACAAGAGGTCTCTCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGC-AAAAATGCCTGTTTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTAATGTAGAAAT
gi|2 : ggttatcaaatgccatgaaagTTTGTGTTCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ACACACTTGCATTCATTCTCCAGTTTGGGCTGTCT-TTTATATGTTCAGCTAAaagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggTAACTTTATCAGGCATAACTATCACATGAATGCTAAaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacactACATGCCCCAAATTACAGATCAAAACAA--GTT-TACTACCTTCATTTCATTAATTCAAAACA-----T-ATAAATTGCATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAAGATGGATGTACGTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTACATTTAAG-CACTGCACACTAATTATAAATATAACCCTGTTTTCTATGGCTGCTGAAAAA-AAAAAAAATTGTTGAGAA-------------------ACAATAATTCTG-CAAAAGTCGTTTGAACTAAGCACCACCCAAAAGTGATcagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|3 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaATCACAATACCAC-CCAC-CGCC-AACAAGAGGTCTGTCGACAAGTTGTATTAGTTAAATGACATCAACTGTAAAGTGCAAAAAATGCCTGTGTATACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGATTCCCAAACAGTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTTTAATAGTATAATTAATTAGTAATATTATTAGTATAATTAATTTAATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCT
gi|3 : gatatcaaatgccataaaagTAATTTTATCAGGCATAACTATTACATGAATGCTAAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|3 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaatACATGCCCCAAATTACAGATCAAAACAA--TTT-TACTACCTTCATTTcagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|4 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaGCCCCAACTTACTGATCAAAAT-A--TTTGTACTA--------------ATTCGTAACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACTATAAGGATGCGTTT----------------TGA--------A-GCTATATTAGAG-CACTGCACACTAATTATCAATTTAATCCCG-TTTCACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAATTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTTAAACTG----------CAGC-ATCCA------CATGTTAC-----ATT----TATATACATTA---ATGCTACATTTATATACATCAATATA-TTGAAATGAAACTCTTTAATACTGCTATTTTAAAGTGGTCGTACATCATGATTTACCAGTTGTGATACGGTGTAATTTAGTTTTGTTGCATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTA-TA-----TAATAAATTCATGTTGGAAGTGTCATAAAAAA-TT--TGGATAAAGGACGCATTTCACACACAAAAAA-ATAATAACA--AACAAATAAT-GTG-TA-AC------------GCATATAACAGCACTTGCATGTTTATAGCC
gi|5 : cGCCCCAACTTGCTGATCAAAAC-A--TTTGTACT------ATTTCGT--------AACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCAAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACCATAAGGATGCGTTT----------------TGA--------A-GCTATATTACAG-CACTGCACACTAATTATTAATTTAATCCCGTTTT-ACTGGCTGCT--ACAATAACATAATTTGTTGAGAAACTTATAAGTAACTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGTACATAAAAAAGCCAGTTT-CACTTAAACTG----------CAGC-ATGCA------CATGTTAC-----ATT----TATATACATGA---ATGCTACATTTATATACATCAATATA-TTAAAACGAAACTCTTTAATACTGCTATTTTAAAGTCGTCGTACATCATGATTTACAAGTTGTATTACTGTGTAATTTAGTTTTGTTGTATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTA-AA-----TAATAAATTCATGTTGGAAGTGTCATAAAAAA--------ATAAAGGACGCATTTCACA---AAAAGA-ATAGTAAC----------------A-CATATTTT---GTAA-AGCATATAACAGCACTTGCATGTTTATAGC
gi|6 : cAATTGCAAAT-AAAA--G--TTT------CTTTTAT--CATTAATTAAAAACATACATGTAT---TTACATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAATATGGATGTACTTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTACATTTAAG-CACTGCACACTAATTATAAATATAACCCTGTTTTCACTGGCTGCTGAAAAA-AACATAATTTGTTTAGAA-------------------ACAATAATTCTG-CAAAAGTCATTTGAACTAAGCATGACTCAAAAGTGATTGCAAAACCAGCA---AA----------TTCCACTCTAATTGATTTGGGTATAAATAATGCAAGT-TGTATTTTATGAATAATTGCAGCATGCACAGTAGTCATGTTGAATTTGTAGACATTAATATATTTAAAATGAAACTCTT---GACTACTATTTTAAGGTATTATTATATCATGACTTAACAGTTGTATT-CTGTGTGATTTAGTTTTGTTACATGAAG----CCATAATATGAAAAAATTATCACAGTTTAat
gi|7 : tggcctattgACA--AACAAACAACAG-A-CA-ATTTTTCTAT-TCGGCATAAAACAGCACTTGCGTGTTTATAGCC
gi|8 : TATACATTAATAATGTTATATTTATACACATTAATATATTTAAAATGAAACTCTTTA---CTGATATTTTAAGGCGTTA-TATATCACGACTTACCAGTTGTATTACTGTGTAATTTAGATTTGTTGTATGAAGA----CATAATATGAAAAAATAATCAAAGTTTAT--TTA-AATAGCGTAATAAATTCACAATGGTAATGTC-TAAAAAAGGTAATAAATAAGGGGTACATTTTGTA---AAAAAA-Aagcacaaatattacaaaagtgaaaacatgaaaataagattataagagaagtaaataaagttaataaatattggtttagtacaatttaacaattatcgtagttatatttttaattaaataatttactgccaatataagtctggtgccattattcattcttagttggaaggcaaaacatataaatttggataaattgttcattgtctttgtgcattgggaggcgataa
gi|9 : tatttacatgactgTCTAACAGTTATCATTAGTT-----TGAACCAACATATTCCATCTTACAGACAGTTGTACTTCAATGTACAATAAGGATGCATTTTACTGCACACTAACAGTGACGTATTCCATGTTATATATACGTCCCTG-ACACTAAATATAAATATCAGTCTGTTTTCA--GGTTGTTGaca
blockSeqs : . CG C G C C C A T AC T CGACATCGTTCC A G T NNNGT TTAA TAGTAATATTATTAGTATAATTAATTTA C C C C TGAAT G AT T G TACATGT AAA G TACTGCACACTAACAG CGTATTCC T T A GA T ACTTATAAGTAATTAAAGG ATT C T C C A C A ATTTGGGTATAAATAATGCAAGTTG G GAATA GCAG T GTC T TAAT GG CG AGCT C AT T TAGCG A GGTAA A A CAC . AGC CAGACAATTTTTCTATTC C
blockSeqs : . C . G G C C . G . T NNNNNNNNNNNN N N N . . ATA . T A C CAA G AC T T G . A . . . . C GA T ACTTATAAGTAACTAAAGG ACA C A A C A C A CAGCATCCA G . . T ATA T TAAT CG CG AGCT C . . CG A GTTA A A . . A CGAATAATTTTATTT A
blockSeqs : A C CAA . AC T T T . T . . . . C . . . ACA . A A . . . T CAGCATGCA T . . G . . TA AT AT A C . . . . TT G G . . A CAACTATTTCATTA T
blockSeqs : C C TA . A T . G . T . . . . C . . . ATT . T G T . . G GT A . . . . . . . . ACATATTTTGTAA T
blockSeqs : C . CA . C . . G . A . . . . . . TGTGTAAC A
blockSeqs : A . G . . .
blockSeqCons : ** ******************* ACN TA** A*** CGNACAATTTTATTN*******
originalCons : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTNTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTATATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCTGAAAAATAACATAATTTGTTGAGAAACTTATAAGTAA-TAAAGGACAATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAACTGATTTGGGTATNAGCAATGCAAGT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTAANACTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAAC-G-A-CA-ATTTT---AT-T-GGCATANAACAGCACTTGCGTGTTTATAGCC
finalCons : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTNTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTATATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCT--AAAATAACATAATTTGTTGAGAA-------------------ACAATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAACTGATTTGGGTATNAGCAATGCAAGT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTA--ACTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGA---CCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAACGNACAATTTTATTN-------GGCATANAACAGCACTTGCGTGTTTATAGCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACATATTCAGATAAAATAATGTACACTTGGTTTGTGGTGTTGAGGTACATCTCTATAGTGTAAGCTAGTACACTTTTCTGTTTGAAAAGAGCTCCAGGTTCAAGTCCTGGTGGGGATTTTGACAC
Unaligned ( gi|15 ): AGACATTATTCTAGCCTGTTTTTCATCACTGGATCAAACTCAAAATTATGCTACCATTCCTGAAATAAAC
Unaligned ( gi|16 ): TTACATATTTAAATACAGCATACACTTGGTGTTTGGGCACATCGCTATAGCGTAAGTTAACACA
Alignments
lowQualScore : 1111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 1 111 1 2 1 11 333333333333 33333 2222 1111111111111111111111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777 11111 1 2222222 111 4444444444444444 22222222 1 1 0000000000000000000000000000000000000000 1 55555555555555555555555555 22222 2222 111 1 22222 44444 1 11 33333 2 22222 111 1 111 2222222222222222222
lowQualScore : 3 666 3 6 6 6 6 2 1 88 7 444444444444 1 1 1 33333 8888 9999999999999999999999999999 6 1 77777777777777777777777777777777777777777777777777777777777777777777777777777 1 4 77777 1 44 1 7 1111111 111 1 0 0 0 4444444444444444 44444444 6 0 6 0 2 3 0 1 5555555555555555555555555555555555555555 1 5 1 0 1 2 3 0 2 1 99999999999999999999999999 1 77777 3333 1 888 0 0 0 22222 22 99 0 11111 0 11 8 99999 0 00000 1 2 777 0 111 2222222222222222222 1
lowQualScore : . ... . . . . . . . .. . ............ . . . ..... .... ............................ . . ............................................................................. . . ..... . .. . . ....... ... . . . . ................ ........ . . . . . . . . ........................................ . . . . . . . . . . .......................... . ..... .... . ... . . . ..... .. .. . ..... . .. . ..... . ..... . . ... . ... ................... .
lowQualScore : 3 777 3 7 7 7 7 0 0 33 3 000000000000 0 0 0 33333 3333 7777777777777777777777777777 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 44444 4 44 4 2 7777777 777 0 4 3 7 2222222222222222 22222222 7 3 7 7 5 3 6 2 0000000000000000000000000000000000000000 0 0 4 6 4 5 2 2 5 0 22222222222222222222222222 0 00000 0000 0 888 8 8 6 88888 00 44 8 88888 8 00 0 00000 4 00000 2 0 555 0 888 2222222222222222222 0
consensus : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTNTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTATATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCT-AAAANAACATAATTTGTTGAGAA-------------------AC-------------------AATAATACTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAACTGATTTGGGTATNAGCAATGCAAGT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTA--A--CTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGAGCTCCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAACG-ACA-ATTTT---ATTAGGCATANAACAGCACTTGCGTGTTTATAGCC
Reference ( family-1928 ) : NATCACAATACCAC-CCAC-C-CC-AACAAGAGGTCT-TCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGCGAAAAATGCCTGTNTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTGNTGTAGAAATTATTTTGTNTNCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATGTTCAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTATCAGGCATAACTATNACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACGA--TTT-TACTACCTTCATTTCATTAATTCAAAACA-----G-AT---TTGCATTGCNTAGTAAGAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACGGATGTACTTCATTGTACTATAAGGATGCGTCT----------------TGA--------A-GCTATATTTAAG-CACTGCACACTAATTATAAATATAATCCCGTTTTCACTGGCTGCT-AAAATAACATAATTTGTTGAGAA-------------------AC-------------------AATAACNCTGCCAAAAGTCATTTGAACTAAGCGCGACCCAAAAGTGATTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTCNAACTGATTTGGGTATNAGCAATGCAAGT-C-CATNTTACGAATAATTGCAGCATATACATTAGTCATGTTACATTTATATACATTAATATATTTAAAATGAAACTCTTTA--A--CTGCTATTTTAAGGTGTTANTATATCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTTGTTGCATGAAGA---CCATAATCTGAAAAAATAATCACAGTTTAC--TTA-AA---CGTAATAAATTCACGTTGGAAGTGTCATAAAAAAGTT-ATGGATAAAGGACGCATTTCGCA---AAAAAA-ATAGTAACA--AACAAACAACGNACA-ATTTT---ATTNGGCATANAACAGCACTTGCGTGTTTATAGCC
gi|1 : ATCACAATATCCCACCACAC-CC-AACAAGAG---T-T--A-AAGTTATTTTAATTAAATGACATCAATTGTAAAGGGCGAAACATGCCTGTATAT--GTTGCAAAT--------ACTGAGACAAAAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACT------------CAAAATGTTGCTGTAGAAATTATTTTGTTTACTAGTATAATTAATTAGTAATA-----TTAT----TAGTATAATTAAT-----ATG--------------------ATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCTTTATATATTCAGCTAA
gi|1 : aTATTTCTATCAAGCATAACTATGACATGAATGCTAAATCTGTATAATACATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATGCCCCAAATTACAGATCAAAACAA--TAT-TACTACCTTCATTTCATTAATTCAAAACA-----T-AT---TTACATTGCATAGTAAGAAGCCTCCAACAGATAGTCTTAGTTGGAATTGAACCAACATCTTCCATTTAAAAGATGGATGTACTTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTAAATTTAAG-CACTGCACACTAATTATAAATATAATCCTGTTTTCACTGGCTGCT-AAAA-AACATAATTTATTGAGAA-------------------AC-------------------AACAATACTGA-AAAAGTCATTTGAACTAAGCACGACCCAAAAGTGATTGCAAAATCAGTACATAAAAAAGTCAGTTTCCACTCCAATTGATTTGGGTATAAATAATACAAATCC-CATTTTATGAATAATTGCAGCATACACAATAGTCATGTTTCATGTGTATACATTAATATATTTAAAATGAAACTC-TTG--A--CTACTATTTTAAGGTATTATTATAGCATGACTTACCAGTTGTATTACTGTGTAATTTAGTTTAGTTGCATGAAG----TCATAATCTGAAAAAATAATGACAGTTTAC--TTA-AA-----TAATAAATTCACATT-AAAGTATC-TAAAAACGTT-ATGGATAATTGATGCATTTCACA---AAAAAACATAGTAACA--AACAAACAA---ACA-A---------TAGACATAAAGCAGCACTTGCCTGTTTATAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttctatcaagcataactatgacatgaatgctaaatctgtataatacatccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacatgccccaaattacagatcaaaacaatattactaccttcatttcattaattcaaaacatatttacattgcatagtaagaagcctccaacagatagtcttagttggaattgaaccaacatcttccatttaaaagatggatgtacttcattgtactataaggatgcatcttgaagctaaatttaagcactgcacactaattataaatataatcctgttttcactggctgctaaaaaacataatttattgagaaacaacaatactgaaaaagtcatttgaactaagcacgacccaaaagtgattgcaaaatcagtacataaaaaagtcagtttccactccaattgatttgggtataaataatacaaatcccattttatgaataattgcagcatacacaatagtcatgtttcatgtgtatacattaatatatttaaaatgaaactcttgactactattttaaggtattattatagcatgacttaccagttgtattactgtgtaatttagtttagttgcatgaagtcataatctgaaaaaataatgacagtttacttaaataataaattcacattaaagtatctaaaaacgttatggataattgatgcatttcacaaaaaaacatagtaacaaacaaacaaacaatagacataaagcagcacttgcctgtttatagcc
gi|10 : aatcacaatatcccaccacacccaacaagagttaaagttattttaattaaatgacatcaattgtaaagggcgaaacatgcctgtatatgttgcaaatactgagacaaaaaatagtttcccaaacagttccaaaccagttgggactcaaaatgttgctgtagaaattattttgtttactagtataattaattagtaatattattagtataattaatatgatacacttgcattcattctccagtttgggctgtttctttatatattcagctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAC-AACT-ATTTC---ATTAGGCATACAACAGCACTTGTGTGTTTATAGCC
gi|11 : tAACAGCAACAAACAACGAATA-ATTTT---ATTTGGCATAAAACAGCACTTTCGTGGTTATAGCaacacaaatattacagcagtatagtgaaaacatgaaaataagactatcagagaagtaaataaagtgaataaagtttggttttatacattgcattcaaaataatcataa
gi|13 : acAACTTACAGGT---AATGAATTTT-TACCATCTTCATTTCATGAATTCAAAACA-----G-AT---TTGCATTGCGTAGTAAGAAGCCTCTAACAGATATCCTTAGTTGGGATTGAACCAACCTCTTCCtaacacaaatataacaacagtgaaaacatgaaaataagattatcataagaaggagctacaaaaccaata
gi|14 : TAATCGGAGAAAATAATCACAGTTTACATTTATAC---CGTCATAAATTCACGTTGAAAGTGTC-TGAAAAAGTT-ATGGATAA
gi|2 : ATCACAATACCAC-CCAC-C-CCCAACAAGAGGTCTCTCGACAAGTTATTTTAGTTAAATGACATCAACTGTAAAGTGC-AAAAATGCCTGTTTAT--GTTGCCAATTGCTCCGAACCGAGACAACAAATAGTTTCCCAAACAGTTCCAAACCAGTTGGGACTCGACATCGTTCCCAAAATGTTAATGTAGAAAT
gi|2 : ggttatcaaatgccatgaaagTTTGTGTTCTAGTATAATTAATTAGTAATA-----TTGT----TAGTATAATTAAT-----ATA--------------------ACACACTTGCATTCATTCTCCAGTTTGGGCTGTCT-TTTATATGTTCAGCTAAaagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggTAACTTTATCAGGCATAACTATCACATGAATGCTAAaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|2 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacactACATGCCCCAAATTACAGATCAAAACAA--GTT-TACTACCTTCATTTCATTAATTCAAAACA-----T-ATAAATTGCATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAAGATGGATGTACGTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTACATTTAAG-CACTGCACACTAATTATAAATATAACCCTGTTTTCTATGGCTGCTGAAAAAAAAAAAAATTGTTGAGAA-------------------AC-------------------AATAATTCTG-CAAAAGTCGTTTGAACTAAGCACCACCCAAAAGTGATcagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaacatgccccaaattacagatcaaaacaagtttactaccttcatttcattaattcaaaacatataaattgcattgcattgtaagaagcctccaacagatatccgtagttggaattgaaccaacatcttccatcttaaagatggatgtacgtcattgtactataaggatgcatcttgaagctacatttaagcactgcacactaattataaatataaccctgttttctatggctgctgaaaaaaaaaaaaattgttgagaaacaataattctgcaaaagtcgtttgaactaagcaccacccaaaagtgat
gi|3 : ggttatcaaatgccatgaaagatcacaataccacccacccccaacaagaggtctctcgacaagttattttagttaaatgacatcaactgtaaagtgcaaaaatgcctgtttatgttgccaattgctccgaaccgagacaacaaatagtttcccaaacagttccaaaccagttgggactcgacatcgttcccaaaatgttaatgtagaaataagaaaagttaaacattagagaggaaactgatggaggtttgtgttctagtataattaattagtaatattgttagtataattaatataacacacttgcattcattctccagtttgggctgtcttttatatgttcagctaaaattataacacaatatttacttatatacataatggtcctggtgttgagtacatatctttatagtgtatgttttttttctatatgaactgagctccaggttcaagtcctggtgaagacctcaacactttcaatcattgactaacataaacacttaactttatcaggcataactatcacatgaatgctaacagacattgaactagcctaaagtttctcatcagctgtcacgaaaactcaaaattgttctatactttctgaaataaATCACAATACCAC-CCAC-CGCC-AACAAGAGGTCTGTCGACAAGTTGTATTAGTTAAATGACATCAACTGTAAAGTGCAAAAAATGCCTGTGTATACGTTGCCAATTGCTCCGAACCGAGACAACAAATAGATTCCCAAACAGTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTTTAATAGTATAATTAATTAGTAATATTATTAGTATAATTAATTTAATACACTTGCATTCATTCTCCAGTTTGGGCTGTTTCT
gi|3 : gatatcaaatgccataaaagTAATTTTATCAGGCATAACTATTACATGAATGCTAAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|3 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaatACATGCCCCAAATTACAGATCAAAACAA--TTT-TACTACCTTCATTTcagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaacatgccccaaattacagatcaaaacaattttactaccttcattt
gi|4 : gatatcaaatgccataaaagatcacaataccacccaccgccaacaagaggtctgtcgacaagttgtattagttaaatgacatcaactgtaaagtgcaaaaaatgcctgtgtatacgttgccaattgctccgaaccgagacaacaaatagattcccaaacagttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtttaatagtataattaattagtaatattattagtataattaatttaatacacttgcattcattctccagtttgggctgtttctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttcaatcattgaccaacataaacaattaattttatcaggcataactattacatgaatgctaacagacattgaactagactaaagtttcgcatcaactcttatgaaaactcaaaattgttctatccttcctgaaataaGCCCCAACTTACTGATCAAAAT-A--TTTGTACTA--------------ATTCGTAACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCCAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACTATAAGGATGCGTTT----------------TGA--------A-GCTATATTAGAG-CACTGCACACTAATTATCAATTTAATCCCGTTT-CACTGGCTGCT-ACAATAACATAATTTGTTGAGAA-------------------ACTTATAAGTAATTAAAGGACAATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGCACATAAAAAAGCCAGTTTCCACTTAAACTG----------CAGCA-TCCA------CATGTTAC-----ATT----TATATACATTA---ATGCTACATTTATATACATCAATATATT-GAAATGAAACTCTTTA--ATACTGCTATTTTAAAGTGGTCGTACATCATGATTTACCAGTTGTGATACGGTGTAATTTAGTTTTGTTGCATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTA-TA-----TAATAAATTCATGTTGGAAGTGTCATAAAAAA-TT--TGGATAAAGGACGCATTTCACACACAAAAAA-ATAATAACA--AACAAATAATGTGTA-AC-----------GCATATAACAGCACTTGCATGTTTATAGCC
gi|5 : cGCCCCAACTTGCTGATCAAAAC-A--TTTGTACT------ATTTCGT--------AACA-----G-AT---TTGCATTGCTTAGTAACAAGCCTCAAACAGATATCCTTAGTTGGGATTGAACCAACATCTTCCATCTTAAAGACAGGTGTTCTTCATTGTACCATAAGGATGCGTTT----------------TGA--------A-GCTATATTACAG-CACTGCACACTAATTATTAATTTAATCCCGTTTT-ACTGGCTGCT-ACAATAACATAATTTGTTGAGAAACTTATAAGTAACTAAAGGAC-------------------AATAACACTGCCAAAAGTCAATGGAACTAAATGCAACCCAAAAGTGGTTGCGAAACCAGTACATAAAAAAGCCAGTTT-CACTTAAACTG----------CAGC-ATGCA------CATGTTAC-----ATT----TATATACATGA---ATGCTACATTTATATACATCAATATA-TTAAAACGAAACTCTTTAATA--CTGCTATTTTAAAGTCGTCGTACATCATGATTTACAAGTTGTATTACTGTGTAATTTAGTTTTGTTGTATGAAGAGCTCTACAATCTGAAAAAATAAT--CAGCTTAC--TTA-AA-----TAATAAATTCATGTTGGAAGTGTCATAAAAAA--------ATAAAGGACGCATTTCACA---AAAAGA-ATAGTAAC---------------ACATATTTT---GTAAAGCATATAACAGCACTTGCATGTTTATAGC
gi|6 : cAATTGCAAAT-AAAA--G--TTT------CTTTTAT--CATTAATTAAAAACATACATGTAT---TTACATTGCATTGTAAGAAGCCTCCAACAGATATCCGTAGTTGGAATTGAACCAACATCTTCCATCTTAAATATGGATGTACTTCATTGTACTATAAGGATGCATCT----------------TGA--------A-GCTACATTTAAG-CACTGCACACTAATTATAAATATAACCCTGTTTTCACTGGCTGCTGAAAAAAACATAATTTGTTTAGAA-------------------AC-------------------AATAATTCTG-CAAAAGTCATTTGAACTAAGCATGACTCAAAAGTGATTGCAAAACCAGCA---AA----------TTCCACTCTAATTGATTTGGGTATAAATAATGCAAGT-TGTATTTTATGAATAATTGCAGCATGCACAGTAGTCATGTTGAATTTGTAGACATTAATATATTTAAAATGAAACTC-TTG--A--CTACTATTTTAAGGTATTATTATATCATGACTTAACAGTTGTATT-CTGTGTGATTTAGTTTTGTTACATGAAG----CCATAATATGAAAAAATTATCACAGTTTAat
gi|7 : tggcctattgACA--AACAAACAACAGACA-ATTTTTCTATTCGGCATAAAACAGCACTTGCGTGTTTATAGCC
gi|8 : TATACATTAATAATGTTATATTTATACACATTAATATATTTAAAATGAAACTCTTTA-----CTGATATTTTAAGGCGTTA-TATATCACGACTTACCAGTTGTATTACTGTGTAATTTAGATTTGTTGTATGAAGA----CATAATATGAAAAAATAATCAAAGTTTAT--TTA-AATAGCGTAATAAATTCACAATGGTAATGTC-TAAAAAAGGTAATAAATAAGGGGTACATTTTGTA---AAAAAA-Aagcacaaatattacaaaagtgaaaacatgaaaataagattataagagaagtaaataaagttaataaatattggtttagtacaatttaacaattatcgtagttatatttttaattaaataatttactgccaatataagtctggtgccattattcattcttagttggaaggcaaaacatataaatttggataaattgttcattgtctttgtgcattgggaggcgataa
gi|9 : tatttacatgactgTCTAACAGTTATCATTAGTT-----TGAACCAACATATTCCATCTTACAGACAGTTGTACTTCAATGTACAATAAGGATGCATTTTACTGCACACTAACAGTGACGTATTCCATGTTATATATACGTCCCTG-ACACTAAATATAAATATCAGTCTGTTTTCA--GGTTGTT-aca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACATATTCAGATAAAATAATGTACACTTGGTTTGTGGTGTTGAGGTACATCTCTATAGTGTAAGCTAGTACACTTTTCTGTTTGAAAAGAGCTCCAGGTTCAAGTCCTGGTGGGGATTTTGACAC
Unaligned ( gi|15 ): AGACATTATTCTAGCCTGTTTTTCATCACTGGATCAAACTCAAAATTATGCTACCATTCCTGAAATAAAC
Unaligned ( gi|16 ): TTACATATTTAAATACAGCATACACTTGGTGTTTGGGCACATCGCTATAGCGTAAGTTAACACA