lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111 33333333333333333333333333333333 11111111111 111111111111111111111111111111111111111111 3333333333333333333333333333333333333333333333333333333
lowQualScore : 1 2 1 444444444 44444444444444 1111 5555555555555555555555555555555555555555555555555555555555555555555 1 1 1 1 333 11 11 11 1 1111 1 1 1111 11 222 1 2222 222 666666666666666666 7777777777777777777777 1 55555555555555555555555555555555 2222 444 44444444444444444444444 222 1 1 11 1 333333333 1 222 111111 1 77777777777777777777777777777777777777777777777777777777 2 3333 1 55555555555 11 1 1 1 6666666 1 222222222222 3 1 1 2222222222 111 3333333 111 111 11111 3333333 111111 22222222 666666666666666666666666666666666666666666 4444444444444444444444 11 3333333333333333333333333333333333333333333333333333333 55
lowQualScore : 5 3 5 6 111111111 2 77777777777777 8 2222 7 6 7 3333333333333333333333333333333333333333333333333333333333333333333 1 55 6 1 77 1 5 6 7 1 1 6 111 66 3 77 0 3 99 2 5 33 3 3 5555 0 5 33 0 4 5 0 5 4 0 5 4 3333 0 5 0 99 444 3 8 0 4444 333 8 2 2 666666666666666666 6 6 2222222222222222222222 6 6 5 6 6 6 33333333333333333333333333333333 7 6 7 2222 111 55555555555555555555555 333 0 6 3 0 4 0 0 00 0 3 2 111111111 0 0 6 111 1 222222 2 6 6 3 8 2 88888888888888888888888888888888888888888888888888888888 4 4 0 3333 0 66666666666 22 4 7 5 4 6 6 5 0000000 4 0 4 666666666666 5 1 4 1 0 0 0000000000 6 3 444 7777777 444 444 0 22222 4 0 8 8 5555555 666666 1 33333333 2 000000000000000000000000000000000000000000 0 6 8 3 6666666666666666666666 5 6 4 77 88 7777777777777777777777777777777777777777777777777777777 3 6 6 55
lowQualScore : . . . . ......... . .............. . .... . . . ................................................................... . .. . . .. . . . . . . . ... .. . .. . . .. . . .. . . .... . . .. . . . . . . . . . .... . . . .. ... . . . .... ... . . . .................. . . ...................... . . . . . . ................................ . . . .... ... ....................... ... . . . . . . . .. . . . ......... . . . ... . ...... . . . . . . ........................................................ . . . .... . ........... .. . . . . . . . ....... . . . ............ . . . . . . .......... . . ... ....... ... ... . ..... . . . . ....... ...... . ........ . .......................................... . . . . ...................... . . . .. .. ....................................................... . . . ..
lowQualScore : 0 0 0 7 777777777 5 00000000000000 0 6666 5 7 5 1111111111111111111111111111111111111111111111111111111111111111111 7 11 7 4 99 7 0 0 0 0 0 7 777 00 7 99 4 0 44 7 7 33 9 3 0000 3 7 00 7 3 0 2 4 4 1 3 3 1111 8 3 1 44 666 3 9 2 0000 555 8 2 5 888888888888888888 0 0 5555555555555555555555 0 0 0 0 0 0 33333333333333333333333333333333 0 7 0 7777 777 77777777777777777777777 333 0 0 5 2 0 0 2 22 0 2 5 666666666 2 8 0 444 4 888888 5 7 0 7 2 2 11111111111111111111111111111111111111111111111111111111 0 0 0 5555 5 00000000000 00 0 0 0 7 0 0 0 7777777 4 7 6 000000000000 2 7 3 8 2 4 7777777777 7 2 000 3333333 000 000 8 22222 4 8 2 0 8888888 222222 4 88888888 2 222222222222222222222222222222222222222222 8 0 2 2 2222222222222222222222 0 0 0 55 55 0000000000000000000000000000000000000000000000000000000 0 0 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCT-CA-T-ACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCG-TTTTTGTAAACAAACACAGAAC----GTGC-NTT-T-----GA--TGCGACTT---GGAAAAAN--TTT-----TTT-----TCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCGATGCACATGGTCACGTTCTTTCGATCTGATGCGACACATAGTACAAATGAGCTGCAA-TT--AAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGTCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTAGATAGCCCAAGNCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCG---TATTTATGAAATTAGAGCTGT-TTTTC--TTA-TTT-TATCACCCCAC---CCATCGAATTTCATNAATACCATAGCTGACGAAGTAT-CTTCCTTTCTTC---AAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATANAAGGAACTCCTTGATTTATACTTGTTTGCCAAAATACACAAATGGTTGTTCTTTTT-TTCTGCCACCCCTCTACCCCACCCCTCA---ACACACCTACTAGATTCACTTTCTTTATATTTTT-AAATCACA----TGTATA--CAAANTAA---ATTTA---AAA-AGCATGCTGTTANGGCANGGATTGTTGATGAC-AAAA-TAATCTTGCTGGC-------TGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTNAGAAGCATGCTCCTTTCCT-----TA-TTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATNTNTTTTATGNTGGCANTGACCCACCTCCCACATTGGTATGNTTTAAG--------GCACTATACCNATGATGTTACGAGTTCGAGTCCCGGCTCTGCACATTTTGTT---GTAAGTTTGATACCCAGTTATT-AAAAAGGCCACTCG-TATTT-ATGAAATTAGAGCTGTTT-TTCTTATTTNTATCACCTCAACCATCGAA-TTCA-T-CTANCGCT--GCAAATGTCAGCG----CGCTTA---AA---CGTAT-AC--TTNAATNTAAA-AA-GGATAGCATGCTGTTANNGNAAGG----GTT-GTTGATGACAA-AA-TA-A-TCCTNTCTGAAAG-TGCTGTC-NT---GTC---TTAGACTAGGGACANTGNGTTCGACTCCTAGGAGATTAATAA---AC-T-TCATCNATACCATAGCTAAAGAAGTAAAACCTGTNCATATGTACAAANCAGACCCTGCCGCCATGAANA-------------TAANCATTATACCGTTATTTATAGAATTATAAACACTTTTNATAGTTATCATTTTCTCACGTC
Reference ( gi|1 ) : TGCTATTTTCCTGCCAAACTGATAGTCTGCTACCCTGTCCAACTTCATTCCGTTACCCTTCAAT-ACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTTCG-TTTTCGTAAACAAACTCTCAAA----GTAC-TTT-TCA---GA--TGCAACAT---AGACA-----TTT-----TTA-----TCAATACATGGAGCAAAAGTATGTGATACCGTT--GTGGGGAATCAATGCACATGATCATATTCTTTCGATCTGATGTAACACATTGTACAAATTAACTGCAA-T---AAGTTGTTTGCAATGAAATTATGACCGATGGGTC--AAGTTTTTAAATGGATCCG-AAAACACGTTTTCACGGCCTA-ATTTTCTTATTAAGCGTGGCCATCTCTTCTGACACA---TTTT-TCTGGATAGCCCAAGGCACGAGCTTTCGTTTGATACCAAGTTATT-AAAAAGGTCATTCA---TATTTATAAAATTAGAGCTG--TTTTG--TTA-TTT-TATCACCCCAT---CCATCGAATTTTATTTATACCATAACTGACGAAGTATGGTTCCT---TTC---AAGGACCTCTTCAATTCCTTGCTTTCTTCGTTTATAC---------------------TTATTTGCCAGAATACAAAGATGATTGTCCTTTTTGTTTTG---------------------CA---ACACAACTACTAGCTTAACATTATTTATATTT---AAATCACA----TGTTTA--CAAAATAAT--ATTTA---AAA-AGCATGTTATTAAGGCATGGTTTGTTGATGAC-AAAA-TAATCTTGCTGTC-------TGATGTCCTTCAGTTTAAACGATGGACACTGGGTTCGACTCCTAGGAGATTAATACACACGTCATCAAAACCATAGTTTTAGAAGCATGTTTCTTTCTT-----TATTTC-TTTATTT---TATTTTT--CAATGGTAAAATGAAAATCTTTTTAATGTTGACATTGACCCACC-CCCACA--GGTATGCTTTAGGTTATTTATGCACTATGTCTATGATGTTATGTGTTCCAGTCCCAGCTTTGCATAGTTTGTTAAAATAAGTTTGATACCCAGTTATT-AAGATGGCCAATCA-TA-CT-GTGAAATTGGAGCTGTTTGTTTTTATTTATATCACCTCAACCATTACA-TTCA-T-CTACCGCT--ACAAATGTCAGGG----AGCTTA---AA---CATAT-AC--TTTAATGTAAA-AA-GGATAGCATGCTGTTACTGAAAGG----GTG-GTTGATGATAA-A--TA-AGTTCTGTCGGAAAGATGAGATC-AT---GTC---TTAGGCTAAGGACAGTAGGCTCGACTCCATGGTGTTTGAT-A---AC-T-TCATCCATACCATAGCTAAAGAGGTAAAACCTGTACATATGTACAAACAAGACCCTGTTGTCATCAATATTTTCTGCTCTGTTAAATGTTATACGATTGTTTACAGAATTATAAACA-TTTTTATAGTCATTATTT--TTATGTC
gi|3 : GTCTGGTACCCTGCCCAACTTCATTC-GTTAC--------------GGTAA--------------AGTATTGGGCTGGTGCCATT----------------GTAAACAAACACAGAAC----GTGC-GTT-TGT---GA--TGTGACTTCTGGGAAAATCT-TTT-----TTATTT--TCCATACATGGAACAAAAGTAAGTGATACCCTTTCGGGGAGAATCGATGCACATAGGCATGTTCTTTTGATCTGATGCAACACATAGTACAAATGAGCTGCAA-T---TAGTTGTTTGCACCGAAAATATG-TCAATTGATC--AAGTTTTTAAATG--TCCC-AAAACACGTTTTCACTGTCTATATTTTC--ATTAGGCAAGGCCTTGCCTTCCAACACA---TTAT-TCTAGATAGCCCAAGTCACGACCTTTCATTTGATATCTAATTATT-AAAAAGGCCACT-------TT------------------TTTTC--TTA-TTT-TGTCACCCCAC---CCATCAAATTTCA---GTA--ATAGCTGACGAAGTATTCTTCCTTTCTTC---AAGGAC
gi|5 : ttgcattttacaactttTCTGGTACCCTG-CCAA-TTCATTCCATTACTCTCCATT-ACGAAGGTCA--------------GATATTGG-CTGGCGCCATCTTAATTTCTGTTTTTTGTAAACAAACGCAGAAC----GTGC-GTT-TAT---GA--TGCGACTT---GGAAAAAAC-TTT-----TT------TCAACAGATGGAATAAAA----GTGATACCCTT--GTGGGCAGTCAATGCACATGGTCATGTTCTTTCGATATAATGCAACACATAGTTCAAAGTAACTGCAA-TTAAAAGC--TTTGCACCGAAATTATGACCGATGGATC--AAGCTTTTAAA--GGTCCC-AAAACACGTTTTCGCGTTCTA-ATTCTTTCGTTAGTCGTGGCCTTCTCTTCGGACACATTTTTTT-TCCAGATAGCCCAAGTCACGCCCTTTC----GATACCCAGTTATT-AAAAAAGCCACTCG---TATTTATAAAAATATAGCTGTTTTTTC--TTATTTT-TATCACCCAAC---CCATCGAATTTCATAAATACCATAGCTGACGAAGTATGCTTTCTTTCTTC---AAGGACCTTTCCAATtcccccccccctccccctccccacaacacacacacctactagattcactgtctttatatttttaaatcacatgtatgattaaatttaaaaagcatgctattacggaatggattggtgattacaacataatcttgctggctgctgtccttcagtttagactagggacactgggttcgactcctaggagattaatatacatgtcatcaataccatagcttaagaagcatgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
gi|10 : CCGTTACCCT-CAATTACGAAGGTCAAGTATTGGAGGCTAGGTATTGG-CTGGCGCCATCTTTATTTCCG-TTTTTGTAAACAAACTCT------------------------A--TGCAACAT---AAAAAATTAATTG-----TTT-----TCAATACATGGAGCAAAAATAAGTGACACCGTT--ATGGGGAATCAATGCACATGATCATATTCTTTCGATCTGATGCAACACATAGTACAAATGAACTGCAATT---AAGTTGTTTGCACTGAAATTATGACCGATGGGTC--AAGTTTTTAAATGc
gi|7 : T-ACCAAGGTCA--------------GGAATTGG-CTGGCGCCATCTTTATTTCCG-TTTTTGTAAACAAACAC--AGAACGTGTGC-TTA-T-----GA--TGTGACTT---GGAAAAAC--TTT-----TTT-----TTAACACATGGAATAAAAGTAAGTGTAACCCTT--GTAGGGCATCAATGTACATGATCATGTTCTTTTGATCTGATACGTTACATAGTATAAATGAGCTGCAA-TT--AAGTTGTCTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGATCCC-AAAACACGTTTTCAAAGTCTA-ATTTTTTCGTTAGGCGTGGCTTTCTCTTCTGACACA----TTT-TCAAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTGTT-AAAAAGGCCACTCG---TATTAATGAAATTAGAGCTGT-TTTTC--TTATTTT-TATCATCTCAC---CCATCGAATTCTA
gi|14 : TCA--------------GATATCGG-CT-------------TTTCCG-TTTTTGTAAACAAACACAGAAC----GTGC-GTT-T------A--TGAAAT------GAC------TTA-----TGAAAAATTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA-CCATCCGACCTGATacgctgaaaatgcccacccacacacct
gi|13 : TTTCCG-TTTTTGTAAACAAACACAGAAC----GTGCGTTTATGA---AA--TG--ACTT---AGAAAAAAC-TTT-----TTT-----TCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA-CCATCCGACCTGATc
gi|2 : cagatatcggctAAC----GTACGTTT-TTATGCGACTTGCGACTT---GGAAA-----TTTATTTTTTT-----TCAACACATGGAATGAAGGTAAGTGATACCCTT--GTGAGGAATCGATGCGCATGGTCATGTTCTTTCGATCTGATGCAACATATAGTACAAATGAGCTGCAA-TT--AAGTTGTTTGCACCAAAATTATGACCGATGGATCTCAAGTTTTTAAATGGGTCCC-AAAACACGTTTTCATGGACCA-ATTTTCTCTTTAAGCATGACGTTCACTTCCGACATA-------------------------ACGATCTTTCGTTTGATATCCAGTTATT-AAAAAGGTCACACG---TATTTATGACATTAGAGCTA--TTTTTC-TTA-TTTGTATCACCCCAC---CCATCGAATTTCATAAATACCATAACTGACGAAGTA------------------ATGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGTCAAAATACACAAATGGTTGTTCTTTTT-TTCTGCCACCCCTCTACCCCACCCCTCATACACACAACTACTAAATTAACTTTTTTTATATTTTTTAAATCAAA----TGTATAATTAAAGTTAA--ATTTA---AAA-AGCATGCTGTAAAGGCAAGGTATGTTAATAAC-AAAA-TAATCTTGCTGAC-------TGCTGTTCTTCAGTTTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAATACACATATCATCGGTACCATAGCTTGATAAGGATGCTTCTTTCCC-----T--TTC-TTTATTT---TATT----------GTA---------TCTTTTTTATGTTGACAATGACCCATCTCCCACA--GGTATGGTTTAAG---------CACTATACCTATGATGTTATGAGTTCGAGTCCCTGCTCTGCACATTTTGCTTATGTAAGTTTGATACCCAATCATT-AAGACGGCCAACCA-c
gi|8 : attttgtgtttgttctattaagttaaaTTTCAATCTGATGCGTCACATAGTATAAATGAGCTGCAA-TT--AAGTTGTTTGCACTGAAACAATGACCGATGGATC--AAGTTTTTAAATGGATCAC-AAAACACGTATTCGCCGTCTA-ATTTTTTCGTTAGGCGTAGCCTTCTTTTCTGACACA---TTCT-TCTAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTATTAAAAAAGGCCACTCG---TATTTATGAAATTAGAACTGT-TTTTC--TTA-TTTCTATCACCCCA----CCATCGAATTCTA
gi|9 : TATGACCGATGGATC--AAGATTTTAAAAGGGTCCTTAAAACACGTTTT-ACGGCCTC-ACCTTCTC--TAGGCGTGGCCTTCTCTTCTGAATAA---TTTT-TCTGGATAGCCAAAATCACGACCTTTCAGTTGATACCCTGTTATG-AAAAA----ATCCACAGTATTTATGAAACTAGAGCTGT-TTTTC--TTA-TTT-TATCACCCAAC---CCATCGAATTTCATTAATAACATAGCTGTC---------TTCCT---TTCTTTTAGGACCTCTCCCATTCTTTGCTTTTTTCATTTATAA---------------------TTGTTTGCCAAAacgctgaaaatgcccacccacacacat
gi|12 : cccAATGGGTCCA-ATAACACGTTTTCACGGCCTA-ATTTTCTTATTAGGCGTGGCCATCTCTTCTGACACA---TTTTTTCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCTAGTTATT-AAAAAGGCCACTCG---TTTTTATGAAATTAGAGCTG--TTTTC--TTA-TTG-TA
gi|6 : GTTTGTTACTCAATTATT-AAGAACGCCACTAG---TACTT-TGAAATTTGATCTG--TTTTC--TTA-TTT-AA--ATCTCATCAACCATTGGATT
gi|4 : gaatgtaacgagttcgagtcccagctctgcacattttttatgtaaTTTAATACCCAATTATT-AAGACGGCCACTCG---TA-CTGTGAAATTGATTCTA--TTTTATCTTATTTT-TATCA---CATTTACCATTGGA-TTTATTcattctactactgcaaatgtcagtgcgcttaaaagtatactttaatataaatatggatagcatgctgttaatgcaagggtaatttatgataagaacaatgtcttagattaaggccaatatgctcgattcctagatgttggtaaacttcatccataccataacaaaagaattaaaatctgtacatatgtacaaaccagaccctgttcccatgaagataaccattatctgttatttatatatttgatagttatcattttctcatgtctttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|3 : ttggctgctgtccttcagtatagactagggacacttggttcgactccaaggagattaatacacatgtcatcgataccatagctttaggagcatggtcctttcctttctagttcaatggaaaaataaaatgtattatgatggcattgacccacctccaattggtatgttttaagcactataccaatgatgttatgagttcgagtcccgtctctgcacattttatgtaga---ACACACCTACTAGATTCACTGTCTTTATATTTTT-AAATCACA----TGTATG-----ATTAA---ATTTA---AAA-AGCATGCTATTACGGAATGGATTGGTGATTAC-AACA-TAATCTTGCTGGC-------TGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATATACATGTCATCAATACCATAGCTTAAGAAGCATGCTCCTTTCCTTTTTATATTTC-TTTATGT---TATTTTTTATAATAGAAAAATGActactgctgcaaatttcaacgcgcttaaacgtatacttcaatgtaaaaatggatagcatgctgttattgcaagggttattgatgataaaaatagtcctgtctgaaagatgatatcatgtttcgactaagggctgtagacccgactcctaggggattgataaacttcatccataccatagccaaagaagtaaaacttgttcatatgtacaaaacagaccctgccgctataacaattaccattatagaattataaacactttttatagttatcattttcttacgtcttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|11 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagtattcttcctttcttcaaggactcccccccccctccccctccccacaacac---ACACACCTGCTAGCTTCACTTTCCTTATATTA---AAATCACAACCATGCTTA--CAAAACAATCAATTTATAAAAACAACATGCTATTTAGGTATGGATTGTTGATGAA-AAAAATAATCTTTCTAGG-------TGCTGTCCTTCAGTCTAGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAATA-------CGTCAATACCATAGCTTTAGAAGCta
gi|4 : -AGCATGCTGTTATTGCAAGGGTTATTGATGATAAAAA-TAGTC---CTGTCTGAAAGATGATATCAT---GTTTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATA-A-ACTTCATCCATACCATAGCCAAAGAAGTAct
gi|4 : ttggctgctgtccttcagtatagactagggacacttggttcgactccaaggagattaatacacatgtcatcgataccatagctttaggagcatggtcctttcctttctagttcaatggaaaaataaaatgtattatgatggcattgacccacctccaattggtatgttttaagcactataccaatgatgttatgagttcgagtcccgtctctgcacattttatgtagatttaatacccaattattaagacggccactcgtactgtgaaattgattctattttatcttatttttatcacatttaccattggatttattctactgctgcaaatttcaacgcgcttaaacgtatacttcaatgtaaaaatggatTGGC-------TGCTGTCCTTCAGTATAGACTAGGGACACTTGGTTCGACTCCAAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGGAGCATGGTCCTTTCCT-----T------TCTA----------GTT--CAATGGAAAAAT-AAAATGTATT--ATGATGGCATTGACCCACC-TCCA-ATTGGTATGTTTTAA---------GCACTATACCAATGATGTTATGAGTTCGAGTCCCGTCTCTGCACATTTTAT----GTAGATTTAATACCCAATTATT-AAGACGGCCACTCG-TA-CT-GTGAAATTGATTCTATTTTATCTTATTTTTATCACATTTACCATTGGA-TTTATT-CTACTGCT--GCAAATTTCAACG----CGCTTA---AA---CGTAT-AC--TTCAATGTAAA-AATGGATAGCATGCTGTTATTGCAAGG----GTT-ATTGATGATAA-A--AATAGTCCTGTCTGAAAGATGATATC-AT---GT----TTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATAA---AC-T-TCATCCATACCATAGCCAAAGAAGTAAAACTTGTTCATATGTACAAAACAGACCCTGCCGCTAT-AAC----------------AAT----TACCAT----TATAGAATTATAAACACTTTTTATAGTTATCATTTTCTTACGTCaaacttgttcatatgtacaaaacagaccctgccgctataacaattaccattatagaattataaacactttttatagttatcattttcttacgtcttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|15 : tGAGATTAATACATGTGTCATCGACACCATAGCTTTAGAAGCATGCTTCTTTTTT-----TA--TCATTTATTTGAATATTTttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|6 : ATGTAACGAGTTCGAGTCCCAGCTCTGCACATTTT-TTATG-TAAGTTTGTTACTCAATTATT-AAGAACGCCACTAG-TA-CT-TTGAAATTTGATCTGTTT--TCTTATTTAAATCTCATCAACCATTGGA-TTCA-TTCTACTACT--GCAAATGTCAGTG----CGCTTA---AA---AGTAT-AC--TTTAATATAAATAT-GGATAGCATGCTGTTAATGCAAGG----GTA-ATTTATGATAA-----------------GAA---------CAAT---GTC---TTAGATTAAGGCCAATATGCTCGATTCCTAGATG-TTGGTAA---AC-T-TCATCCATACCATAACAAAAGAATTAAAATCTGTACATATGTACAAACCAGACCCTGTTCCCATGAAGA-------------TAACCATTAT-CTGTTATTTA------TATA------TTTGATAGTTATCATTTTCTCATGTCactttacttttccaaaccca
gi|2 : gaGTTTGATATCCAGTTATT-AAAAAGGTCACACG-TATTT-ATGACATTAGAGCTATTT-TTCTTATTTGTATCACCCCACCCATCGAATTTCA-T-tttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|7 : attttgtgtttgttctattaagttaaaaacgtacgtttttatgcgacttgcgacttggaaatttattttttttcaacacatggaatgaaggtaagtgatacccttgtgaggaatcgatgcgcatggtcatgttctttcgatctgatgcaacatatagtacaaatgagctgcaattaagttgtttgcaccaaaattatgaccgatggatctcaagtttttaaatgggtcccaaaacacgttttcatggaccaattttctctttaagcatgacgttcacttccgacataacgatctttcGTTTGATACCCAATTGTT-AAAAAGGCCACTCG-TA-TTAATGAAATTAGAGCTGTTT-TTCTTATTTTTATCATCTCACCCATCGAA-T----T-CTAACGCT--GAAAATGCCaaataccataactgacgaagtaatgacctctccaattccttgctctcttcatttatacaaggaactccttgatttatacttgtttgtcaaaatacacaaatggttgttctttttttctgccacccctctaccccacccctcatacacacaactactaaattaactttttttatattttttaaatcaaatgtataattaaagttaaatttaaaaagcatgctgtaaaggcaaggtatgttaataacaaaataatcttgctgactgctgttcttcagtttagactagggacattgcgttcaactccttggagattaatacacatatcatcggtaccatagcttgataaggatgcttctttccctttctttattttattgtatcttttttatgttgacaatgacccatctcccacaggtatggtttaagcactatacctatgatgttatgagttcgagtccctgctctgcacattttgcttatgtaagtttgatacccaatcattaagacggccaacca
gi|8 : taccaaggtcaggaattggctggcgccatctttatttccgtttttgtaaacaaacacagaacgtgtgcttatgatgtgacttggaaaaacttttttttaacacatggaataaaagtaagtgtaacccttgtagggcatcaatgtacatgatcatgttcttttgatctgatacgttacatagtataaatgagctgcaattaagttgtctgcaccgaaattatgaccgatggatcaagtttttaaatggatcccaaaacacgttttcaaagtctaattttttcgttaggcgtggctttctcttctgacacattttcaagatagaccaaggcacgacctttcGTTTGATACCCAATTATTAAAAAAGGCCACTCG-TATTT-ATGAAATTAGAACTGTTT-TTCTTATTTCTATCACCCC-ACCATCGAA-T----T-CTAACGCT--GAAAATGCCcacccacacacct
gi|12 : tttcaatctgatgcgtcacatagtataaatgagctgcaattaagttgtttgcactgaaacaatgaccgatggatcaagtttttaaatggatcacaaaacacgtattcgccgtctaattttttcgttaggcgtagccttcttttctgacacattcttctagatagaccaaggcacgacctttcGTTTGATACCTAGTTATT-AAAAAGGCCACTCGTTT-TT-ATGAAATTAGAGCTGTT--TTCTTATTcacccacacacat
gi|5 : aatgggtccaataacacgttttcacggcctaattttcttattaggcgtggccatctcttctgacacattttttctggatagcccaaggcacgacctttcTTCGATACCCAGTTATT-AAAAAAGCCACTCG-TATTT-ATAAAAATATAGCTGTTTTTTCTTATTTTTATCACC-CAACCgta
gi|9 : tctggtaccctgccaattcattccattactctccattacgaaggtcagatattggctggcgccatcttaatttctgttttttgtaaacaaacgcagaacgtgcgtttatgatgcgacttggaaaaaacttttttcaacagatggaataaaagtgatacccttgtgggcagtcaatgcacatggtcatgttctttcgatataatgcaacacatagttcaaagtaactgcaattaaaagctttgcaccgaaattatgaccgatggatcaagcttttaaaggtcccaaaacacgttttcgcgttctaattctttcgttagtcgtggccttctcttcggacacattttttttccagatagcccaagtcacgccctTTGATACCCTGTTATG-AAAAAATCCA--CAGTATTT-ATGAAACTAGAGCTGTTT-TTCTTATTT-TATCACC-CAACCcatcgaatttcataaataccatagctgacgaagtatgctttctttcttcaaggacctttccaatc
gi|16 : ccctatgaccgatggatcaagattttaaaagggtccttaaaacacgttttacggcctcaccttctctaggcgtggccttctcttctgaataatttttctggatagccaaaatcacgacctttcagTGAAGGTAGAGCTGTTT--TTTTAAATATATCACCACAATCA-CACA-TTTA-T-TTATCGCTAGACGAGTGT-AGGACCTCACCTAA---AA---CATcatcgaatttcattaataacatagctgtcttcctttcttttaggacctctcccattctttgcttttttcatttataattgtttgccaaa
gi|11 : GCTTACAAAA---CA-ATCAA--TTTA---TAAA-AA----CAACATGCTATTTAGGTATGG----ATT-GTTGATGAAAA-AAATA-A--TCTTTCT---AGGTGCTGTC-CTTCAGTC---T-AGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAAT-A---------CGTCAATACCATAGCT
gi|3 : acacacctgctagcttcactttccttatattaaaatcacaaccatTTA---AATCACATGT-ATGATTAAATTTAAA-AA-G-----CATGCTATTACGGAATGG----ATT-GGTGATTACAACA--TA-A-TCTTGCTGGC----TGCTGTC-CT----TCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAAT-ATACAT-G-TCATCAATACCATAGCTTAAGAAGCAttagaagcct
gi|2 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagtattcttcctttcttcaaggactcccccccccctccccctccccacaacacacacacctactagattcactgtctttatattt--TTAAATTTAAA-AA-G-----CATGCTGT-----AAAGGCAAGGTATGTTAATAACAA-AA-TA-A--TCTTGCTGACTGCTGT--TC-TTCA-GT----TTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAAT-AC--ACATATCATCGGTACCATAGCTtgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
Alignments
lowQualScore : 33333333 33333333333333 444444444 111 11111 222222 1111 11 1111 1 1 22222 1111 777777777777777777777 1 333333 11111111111111111111 1 3333 222 2222 222 1 222 111 1 1 111 3333 111 1111 11 11 33 777777777 444444444 3333 111 1111 2 1111 33333 88888888888888888888888 8888888888888888888 11111 1111111
lowQualScore : 6 6 2 6 55555555 99999999999999 6 3333 5 3 66 2 333333333 66 777 11111 444444 0000 66 2 33 88 1 66 5 5 5 3 2222 5 2 0 5 0 5 0 0 1 0 0 44444 0000 0 777777777777777777777 2 3 888888 77777777777777777777 0 5555 3 2 0 888 1111 4 000 1 0 777 777 0 2 1 0 1 4 0 0 1 444 2222 11 444 0 7777 0 3 00 1 88 1 0 1 44 6 00 1 111111111 1 2 4 333333333 2 6 9 8888 5 2 3 111 6 1 2 3333 0 1 3 1 1 7777 22 1 88 11111 33333333333333333333333 6 6 4 1 8888 6 777 6 7 1 4 1 1 11 3 1 4444444444444444444 7 44444 6 6666666 1
lowQualScore : . . . . ........ .............. . .... . . .. . ......... .. ... ..... ...... .... .. . .. .. . .. . . . . .... . . . . . . . . . . . ..... .... . ..................... . . ...... .................... . .... . . . ... .... . ... . . ... ... . . . . . . . . . ... .... .. ... . .... . . .. . .. . . . .. . .. . ......... . . . ......... . . . .... . . . ... . . . .... . . . . . .... .. . .. ..... ....................... . . . . .... . ... . . . . . . .. . . ................... . ..... . ....... .
lowQualScore : 7 7 5 5 88888888 22222222222222 7 8888 7 9 99 8 888888888 99 555 88888 000000 6666 99 0 88 55 4 99 0 0 4 1 0000 0 8 2 0 4 0 0 0 0 8 8 88888 4444 6 555555555555555555555 5 3 333333 33333333333333333333 0 0000 0 5 2 555 2222 0 222 0 0 555 555 0 0 0 2 0 0 2 0 0 000 6666 44 000 6 2222 2 5 88 0 33 0 7 0 00 7 77 0 777777777 0 0 2 222222222 0 0 5 0000 0 5 2 000 5 0 5 8888 0 0 7 0 0 3333 00 0 33 00000 33333333333333333333333 7 0 0 0 3333 7 777 0 3 0 7 0 0 33 7 0 0000000000000000000 3 77777 7 7777777 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCC-A--T-ACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTG--CGTTT------G--A--TG---CGACTT---G-GAAAA--AN-TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTTT-CTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTC------TGCC-CCCCCCT-CCCC-CCCC-CA-ACACACA---CTACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAAT-AAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCC---TTAT--TTCTTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACA--GGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTA-CTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGAT-AA-AATAA-TCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGNGNTTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANA-------------TAA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTC--A--T-ACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTG--CNTTT------G--A--TG---CGACTT---G-GAAAA--AN-TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCGATGCACATGG--TCACGTTCTTTCGATCTGATGCGACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGTCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTTT-CTAGATAGCCCAAGNCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATNAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATANAAGGAACTCCTTGATTTATACTTGTTTGCCAAAATACACAAATGGTTGTTCTTTTT-TTC------TGCCACCCCTCTACCCCACCCCTCA-ACACAC----CTACTAGATTCACTTTCTTTATATTTTT-AAATCACA----TGTATA--CAAANT-AA---ATTTA---AAA-AGCATGCTGTTANGGCANGGATTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTNAGAAGCATGCTCCTTTCC---TTA---TTCTTTATTT---TATTTTT--CAATGGAAAAAT-AAAATNTNTTTTATGNTGGCANTGACCCACCTCCCACATTGGTATGNTTTAAG--------GCACTATACCNATGATGTTACGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAGTTATTAAAAAGGCCACTCGTATTTATGAAATTAGAGCTGTTT-T-TCTTATTTNTATCACCTCAACCATCGAATTCA-TCTANCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTNAATNTAAA-AA-GGATAGCATGCTGTTANNGNAAGGGTTGTTGATGAC-AA-AATAA-TCCTNTCTGAAAG-TGCTGTCNTGTCTTAGACTAGGGACANTGNGTTCGACTCCTAGGAGATTAATAAACTTCATCNATACCATAGCTAAAGAAGTAAAACCTGTNCATATGTACAAANCAGACCCTGCCGCCATGAANA-------------TAANCATTATACCGTTATTTATAGAATTATAAACACTTTTNATAGTTATCATTTTCTCACGTC
gi|1 : GTCTGCTACCCTGTCCAACTTCATTCCGTTACCCTTCAA--T-ACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTTCGTTTTC-GTAAACAAACTCTCAAAGTA--CTTTTCA----G--A--TG---CAACAT---A-GACA------TTTTTA----TCAATACATGGAGCAAAAGTATGTGATACCGTTGTGGGGA--ATCAATGCACATGA--TCATATTCTTTCGATCTGATGTAACACATTGTACAAATTAACTGCAAT-AAGTTGTTTGCAATGAAATTATGACCGATGGGTC--AAGTTTTTAAATGGATCCG-AAAACACGTTTTCACGGCCTA-ATTTTCTTATTAAGCGTGGCCATCTCTTCTGACACA---TTTTT-CTGGATAGCCCAAGGCACGAGCTTTCGTTTGATACCAAGTTATT-AAAAAGGTCATTCATATTTATAAAATTAGAGCTG-TTTTG-TTA-TTT-TATCACCCCATCCATCGAATTTTATTTATACCATAACTGACGAAGTA-T-GGTTCCTTTC---AAGGACCTCTTCAATTCCTTGCTTTCTTCGTTTATA---------------------CTTATTTGCCAGAATACAAAGATGATTGTCCTTTTTGTTT------TGC---------------------A-ACACAA----CTACTAGCTTAACATTATTTATATTT---AAATCACA----TGTTTA--CAAAAT-AAT--ATTTA---AAA-AGCATGTTATTAAGGCATGGTTTGTTGATGACAAAA-TAATCTTGCTGTCTGATGTCCTTCAGTTTAAACGATGGACACTGGGTTCGACTCCTAGGAGATTAATACACACGTCATCAAAACCATAGTTTTAGAAGCATGTTTCTTTCT---TTAT--TTCTTTATTT---TATTTTT--CAATGGTAAAATGAAAATCTTTTTAATGTTGACATTGACCCACC-CCCACA--GGTATGCTTTAGGTTATTTATGCACTATGTCTATGATGTTATGTGTTCCAGTCCCAGCTTTGCATAGTTTGT---TAAAATAAGTTTGATACCCAGTTATTAAGATGGCCAATCATA-CTGTGAAATTGGAGCTGTTTGT-TTTTATTTATATCACCTCAACCATTACATTCA-TCTACCGCTACAAATGTCAGGGAGCTTAAACATATACTTTAATGTAAA-AA-GGATAGCATGCTGTTACTGAAAGGGTGGTTGATGAT--A-AATAAGTTCTGTCGGAAAGATGAGATCATGTCTTAGGCTAAGGACAGTAGGCTCGACTCCATGGTGTTTGAT-AACTTCATCCATACCATAGCTAAAGAGGTAAAACCTGTACATATGTACAAACAAGACCCTGTTGTCATCAATATTTTCTGCTCTGTTAAATGTTATACGATTGTTTACAGAATTATAAACA-TTTTTATAGTCATTATTTT
gi|10 : tgctattttcctgccaaactgataCCGTTACCCTC--AATT-ACGAAGGTCAAGTATTGGAGGCTAGGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAAC--------------TCT---------A--TG---CAACAT---A-AAAAATTAA-TTGTTT----TCAATACATGGAGCAAAAATAAGTGACACCGTTATGGGGA--ATCAATGCACATGA--TCATATTCTTTCGATCTGATGCAACACATAGTACAAATGAACTGCAATTAAGTTGTTTGCACTGAAATTATGACCGATGGGTC--AAGTTTTTAAATGtatgtc
gi|11 : -ACACAC----CTGCTAGCTTCACTTTCCTTATATTA---AAATCACAACCATGCTTA--CAAAAC-AATCAATTTATAAAAACAACATGCTATTTAGGTATGGATTGTTGATGAAAAAAATAATCTTTCTAGGTGCTGTCCTTCAGTCTAGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAATAC----GTCA---ATACCATAGCTTTAGAAGC
gi|12 : AATGGGTCCA-ATAACACGTTTTCACGGCCTA-ATTTTCTTATTAGGCGTGGCCATCTCTTCTGACACA---TTTTTTCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCTAGTTATT-AAAAAGGCCACTCGTTTTTATGAAATTAGAGCTG--TTTTCTTA-TTG-TAct
gi|13 : TTTCCGTTTTT-GTAAACAAACACAGAACGTG--CGTTT---------A--TGAAATGACTT---A-GAAAA--AACTTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGTACACGGTTTCAC---CATCCGACCTGAT
gi|14 : cagatatcggctTCA--------------GATATCGG-CT-------------TTTCCGTTTTT-GTAAACAAACACAGAACGTG--CGTTT---------A--TGAAATGACTT---ATGAAAA--A-------T----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGTACACGGTTTCAC---CATCCGACCTGATc
gi|15 : GAGATTAATACATGTGTCATCGACACCATAGCTTTAGAAGCATGCTTCTTTTT---TTA---TCATTTATTTGAATATTTc
gi|16 : TGAAGGTAGAGCTGTTT-T-T-TTAAATATATCACCACAATCA-CACATTTA-TTTATCGCTactttacttttccaaaccca
gi|2 : AAAACGTA--CGTTTTTATGCG--ACTTG---CGACTT---G-GAAATTTAT-TTTTTT----TCAACACATGGAATGAAGGTAAGTGATACCCTTGTGAGGA--ATCGATGCGCATGG--TCATGTTCTTTCGATCTGATGCAACATATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCAAAATTATGACCGATGGATCTCAAGTTTTTAAATGGGTCCC-AAAACACGTTTTCATGGACCA-ATTTTCTCTTTAAGCATGACGTTCACTTCCGACATA-------------------------ACGATCTTTCGTTTGATATCCAGTTATT-AAAAAGGTCACACGTATTTATGACATTAGAGCTA-TTTTTCTTA-TTTGTATCACCCCACCCATCGAATTTCATAAATACCATAACTGACGAAGTA-----------------ATGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGTCAAAATACACAAATGGTTGTTCTTTTT-TTC------TGCCACCCCTCTACCCCACCCCTCATACACACAA--CTACTAAATTAACTTTTTTTATATTTTTTAAATCAAA----TGTATAATTAAAGTTAA---ATTTA---AAA-AGCATGCTGTAAAGGCAAGGTATGTTAATAACAAAA-TAATCTTGCTGACTGCTGTTCTTCAGTTTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAATACACATATCATCGGTACCATAGCTTGATAAGGATGCTTCTTTCC---CT----TTCTTTATTT---TATTGT-------------------ATCTTTTTTATGTTGACAATGACCCATCTCCCACA--GGTATGGTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCTGCTCTGCACATTTTGCTTAT---GTAAGTTTGATACCCAATCATTAAGACGGCCAagacgagtgtaggacctcacctaaaacat
gi|3 : attttgtgtttgttctattaagttaGTCTGGTACCCTGCCCAACTTCATTC-GTTAC----------------GGTAA--------------AGTATTGGGCTGGTGCCAT---------------T-GTAAACAAACACAGAACGTG--CGTTT------GTGA--TG---TGACTTCTGG-GAAAA--TC-TTTTTTATTTTCCATACATGGAACAAAAGTAAGTGATACCCTTTCGGGGAGAATCGATGCACATAG--GCATGTTCTTTTGATCTGATGCAACACATAGTACAAATGAGCTGCAATTA-GTTGTTTGCACCGAAAATATG-TCAATTGATC--AAGTTTTTAAATG--TCCC-AAAACACGTTTTCACTGTCTATATTTTC--ATTAGGCAAGGCCTTGCCTTCCAACACA---TTATT-CTAGATAGCCCAAGTCACGACCTTTCATTTGATATCTAATTATT-AAAAAGGCCACTT----------------------TTTTTCTTA-TTT-TGTCACCCCACCCATCAAATTTCAGTA-----ATAGCTGACGAAGTATT-C-TTCCTTTCTTCAAGGA-CTCCCCCCCCCCTCCCCCTCCCCAacca
gi|3 : ttgcattttacaactttTTCTTCCTTTC-TTCAAGGACTCCCCCCCCCCTCCCCCTCCCCACA-ACACACACACCTACTAGATTCACTGTCTTTATATTTTT-AAATCACA----TGTATG-----ATT-AA---ATTTA---AAA-AGCATGCTATTACGGAATGGATTGGTGATTACAACA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATATACATGTCATCAATACCATAGCTTAAGAAGCATGCTCCTTTCCTTTTTATATTTCTTTATGT---TATTTTTTATAATAGAAAAAT-GAcaacacacacacctactagattcactgtctttatatttttaaatcacatgtatgattaaatttaaaaagcatgctattacggaatggattggtgattacaacataatcttgctggctgctgtccttcagtttagactagggacactgggttcgactcctaggagattaatatacatgtcatcaataccatagcttaagaagcatgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
gi|4 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagtaTGGCTGCTGTCCTTCAGTATAGACTAGGGACACTTGGTTCGACTCCAAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGGAGCATGGTCCTTTCC---TT-------TCTA----------GTT--CAATGGAAAAAT-AAAATGTA--TTATGATGGCATTGACCCACCT-CCA-ATTGGTATGTTTTAA---------GCACTATACCAATGATGTTATGAGTTCGAGTCCCGTCTCTGCACATTTTA----T---GTAGATTTAATACCCAATTATTAAGACGGCCACTCGTA-CTGTGAAATTGATTCTATTT-TATCTTATTTTTATCACATTTACCATTGGATTTATTCTACTGCTGCAAATTTCAACGCGCTTAAACGTATACTTCAATGTAAA-AATGGATAGCATGCTGTTATTGCAAGGGTTATTGATGATAAA-AATAG-TCCTGTCTGAAAGATGATATCATGT-TTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATAAACTTCATCCATACCATAGCCAAAGAAGTAAAACTTGTTCATATGTACAAAACAGACCCTGCCGCTATAACAA-------------T--------TACCA----TTATAGAATTATAAACACTTTTTATAGTTATCATTTTCTTACGTCta
gi|5 : tTCTGGTACCCTGCC-AA-TTCATTCCATTACTCTCC-A--TTACGAAGGTCA--------------GATATTGG-CTGGCGCCATCTTAATTTCTGTTTTTTGTAAACAAACGCAGAACGTG--CGTTTAT----G--A--TG---CGACTT---G-GAAAA--AA-CTTTTT----TCAACAGATGGAATAAAAGT----GATACCCTTGTGGGCA--GTCAATGCACATGG--TCATGTTCTTTCGATATAATGCAACACATAGTTCAAAGTAACTGCAATTAAAAGCTTTGCACCGAAATTATGACCGATGGATC--AAGCTTTTAAA--GGTCCC-AAAACACGTTTTCGCGTTCTA-ATTCTTTCGTTAGTCGTGGCCTTCTCTTCGGACACATTTTTTTT-CCAGATAGCCCAAGTCACGCCCTTTC----GATACCCAGTTATT-AAAAAAGCCACTCGTATTTATAAAAATATAGCTGTTTTTTCTTATTTT-TATCACCCAACCCATCGAATTTCATAAATACCATAGCTGACGAAGTA-TGC-TTTCTTTCTTCAAGGACCTTTCCAATttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|6 : ATGTAACGAGTTCGAGTCCCAGCTCTGCACATTTTTTA--T---GTAAGTTTGTTACTCAATTATTAAGAACGCCACTAGTACTT-TGAAATTTGATCTG-TT-T-TCTTATTTAAATCTCATCAACCATTGGATTCATTCTACTACTGCAAATGTCAGTGCGCTTAAAAGTATACTTTAATATAAATAT-GGATAGCATGCTGTTAATGCAAGGGTAATTTATGAT-AAGAACAA-----------------------TGTCTTAGATTAAGGCCAATATGCTCGATTCCTA-GATGTTGGTAAACTTCATCCATACCATAACAAAAGAATTAAAATCTGTACATATGTACAAACCAGACCCTGTTCCCATGAAGA-------------TAACCATTAT-CTGTTATTTATA----TA--------TTTGATAGTTATCATTTTCTCATGTCc
gi|7 : ga--T-ACCAAGGTCA--------------GGAATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGTGCTTAT------G--A--TG---TGACTT---G-GAAAA--AC-TTTTTT----TTAACACATGGAATAAAAGTAAGTGTAACCCTTGTAGGGC--ATCAATGTACATGA--TCATGTTCTTTTGATCTGATACGTTACATAGTATAAATGAGCTGCAATTAAGTTGTCTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGATCCC-AAAACACGTTTTCAAAGTCTA-ATTTTTTCGTTAGGCGTGGCTTTCTCTTCTGACACA----TTTT-CAAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTGTT-AAAAAGGCCACTCGTATTAATGAAATTAGAGCTG-TTTTTCTTATTTT-TATCATCTCACCCATCGAATTtttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|8 : TTTCAATCTGATGCGTCACATAGTATAAATGAGCTGCAATTAAGTTGTTTGCACTGAAACAATGACCGATGGATC--AAGTTTTTAAATGGATCAC-AAAACACGTATTCGCCGTCTA-ATTTTTTCGTTAGGCGTAGCCTTCTTTTCTGACACA---TTCTT-CTAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTATTAAAAAAGGCCACTCGTATTTATGAAATTAGAACTG-TTTTTCTTA-TTTCTATCACCCCA-CCATCGAATTctaacgctgaaaatgcccacccacacacct
gi|9 : TATGACCGATGGATC--AAGATTTTAAAAGGGTCCTTAAAACACGTTTT-ACGGCCTC-ACCTTCTC--TAGGCGTGGCCTTCTCTTCTGAATAA---TTTTT-CTGGATAGCCAAAATCACGACCTTTCAGTTGATACCCTGTTATG-AAAAAATCCAC-AGTATTTATGAAACTAGAGCTG-TTTTTCTTA-TTT-TATCACCCAACCCATCGAATTTCATTAATAACATAGCTG---------T-C-TTCCTTTCTTTTAGGACCTCTCCCATTCTTTGCTTTTTTCATTTATActaacgctgaaaatgcccacccacacacat
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111
lowQualScore : 111 33333333333333 4444444 111 11111 222222 1111 11 1111 1 1 22222 1111 777777777777777777777 1 11111111111111111111111111111111111111 2222222 222 2222 222 222 111 1 1 333333333 111 1111 11 555555555 444444444 22222 1111 55555555555555555 2 1 0000000000000000000 11111 1111111
lowQualScore : 6 6 2 6 22 999 99999999999999 6 3 3 5 3 66 3333333 66 777 11111 444444 0000 66 33 33 66 5 1 5 5 3 2222 5 1 2 0 5 0 5 0 0 1 0 0 44444 0000 0 222222222222222222222 1 3 22222222222222222222222222222222222222 3333333 1 1 0 888 1111 1 000 1 333 777 0 0 1 0 0 222222222 8 11 444 0 7777 0 3 00 7 7 1 333333333 4 333333333 0 0 1 00000 1 3 1 3 2 3 7777 1 1 55555555555555555 6 6 1 1 4 7 1 0 1 1 5555555555555555555 7 44444 6 5555555
lowQualScore : . . . . .. ... .............. . . . . . .. ....... .. ... ..... ...... .... .. .. .. .. . . . . . .... . . . . . . . . . . . . ..... .... . ..................... . . ...................................... ....... . . . ... .... . ... . ... ... . . . . . ......... . .. ... . .... . . .. . . . ......... . ......... . . . ..... . . . . . . .... . . ................. . . . . . . . . . . ................... . ..... . .......
lowQualScore : 7 7 5 5 88 888 22222222222222 7 2 3 7 9 99 8888888 99 555 88888 000000 6666 99 88 55 99 0 1 0 4 1 0000 0 1 5 2 0 4 0 0 0 4 8 8 88888 4444 6 000000000000000000000 0 3 77777777777777777777777777777777777777 2222222 0 0 2 555 2222 0 222 2 555 555 0 2 0 2 0 666666666 0 44 000 6 2222 2 5 88 3 3 0 333333333 2 222222222 2 2 0 88888 0 2 0 2 5 7 3333 0 0 77777777777777777 7 7 0 0 0 3 0 7 0 0 3333333333333333333 3 33333 7 0000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCA-TTACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T------GA--TG---CGACTT---G-GAAAA--AN-TTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGAT-AAAATAG-TCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCA-T-ACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T------GA--TG---CGACTT---G-GAAAA--AN-TTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGAT-AAAATAA-TCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGNGNTTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
gi|1 : GTCTGCTACCCTGTCCAACTTCATTCCGTTACCCTTCAAT-ACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTTCGTTTTC-GTAAACAAACTCTCAAAGTACTTT--TCA----GA--TG---CAACAT---A-GACA------TTT----TTATCAATACATGGAGCAAAAGTATGTGATACCGTT--GTGGGGAATCAATGCACATGA--TCATATTCTTTCGATCTGATGTAACACATTGTACAAATTAACTGCAAT-AAGTTGTTTGCAATGAAATTATGACCGATGGGTC--AAGTTTTTAAATGGATCCG-AAAACACGTTTTCACGGCCTA-ATTTTCTTATTAAGCGTGGCCATCTCTTCTGACACA---TTTT-TCTGGATAGCCCAAGGCACGAGCTTTCGTTTGATACCAAGTTATT-AAAAAGGTCATTCATATTTATAAAATTAGAGCTG-TTTTG-TTA-TTT-TATCACCCCATCCATCGAATTTTATTTATACCATAACTGACGAAGTA-T-GGTTCCTTTC---AAGGACCTCTTCAATTCCTTGCTTTCTTCGTTTATAC---------------------TTATTTGCCAGAATACAAAGATGATTGTCCTTTTTGTTTT-----G-----C------------------------A-ACACA-A-C---TACTAGCTTAACATTATTTATATTT---AAATCACA----TGTTTA--CAAAATAAT--ATTTA---AAA-AGCATGTTATTAAGGCATGGTTTGTTGATGACAAAA-TAATCTTGCTGTCTGATGTCCTTCAGTTTAAACGATGGACACTGGGTTCGACTCCTAGGAGATTAATACACACGTCATCAAAACCATAGTTTTAGAAGCATGTTTCTTTCTT-----TATTTC-TTTATTT---TATTTTT--CAATGGTAAAATGAAAATCTTTTTAATGTTGACATTGACCCACC-CCCACAGGTATGCTTTAGGTTATTTATGCACTATGTCTATGATGTTATGTGTTCCAGTCCCAGCTTTGCATAGTTTGT---TAAAATAAGTTTGATACCCAGTTATTAAGATGGCCAATCATACTGTGAAATTGGAGCTGTTTGT-TTTTATTTATATCACCTCAACCATTACATTCA-TCTACCGCTACAAATGTCAGGGAGCTTAAACATATACTTTAATGTAAA-AA-GGATAGCATGCTGTTACTGAAAGGGTGGTTGATGAT--AAATAAGTTCTGTCGGAAAGATGAGATCATGTCTTAGGCTAAGGACAGTAGGCTCGACTCCATGGTGTTTGAT-AACTTCATCCATACCATAGCTAAAGAGGTAAAACCTGTACATATGTACAAACAAGACCCTGTTGTCATCAATATTTTCTGCTCTGTTAAA-TGTTATACGATTGTTTACAGAATTATAAACA-TTTTTATAGTCATTATTTT
gi|10 : tgctattttcctgccaaactgataCCGTTACCCTCAA-TTACGAAGGTCAAGTATTGGAGGCTAGGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAAC------------TC--T-------A--TG---CAACAT---A-AAAAATTAA-TTG----TTTTCAATACATGGAGCAAAAATAAGTGACACCGTT--ATGGGGAATCAATGCACATGA--TCATATTCTTTCGATCTGATGCAACACATAGTACAAATGAACTGCAATTAAGTTGTTTGCACTGAAATTATGACCGATGGGTC--AAGTTTTTAAATGtatgtc
gi|11 : -ACACAC--C---TGCTAGCTTCACTTTCCTTATATTA---AAATCACAACCATGCTTA--CAAAACAATCAATTTATAAAAACAACATGCTATTTAGGTATGGATTGTTGATGAAAAAAATAATCTTTCTAGGTGCTGTCCTTCAGTCTAGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAATAC----GTCA---ATACCATAGCTTTAGAAGC
gi|12 : AATGGGTCCA-ATAACACGTTTTCACGGCCTA-ATTTTCTTATTAGGCGTGGCCATCTCTTCTGACACA---TTTTTTCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCTAGTTATT-AAAAAGGCCACTCGTTTTTATGAAATTAGAGCTG--TTTTCTTA-TTG-TAct
gi|13 : TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T-------A--TGAAATGACTT---A-GAAAA--AACTTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA---CCATCCGACCTGAT
gi|14 : cagatatcggctTCA--------------GATATC-GGCT-------------TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T-------A--TGAAATGACTT---ATGAAAA--A-----------TTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA---CCATCCGACCTGATc
gi|15 : GAGATTAATACATGTGTCATCGACACCATAGCTTTAGAAGCATGCTTCTTTTTT-----TA--TCATTTATTTGAATATTTc
gi|16 : TGAAGGTAGAGCTGTTT-T-T-TTAAATATATCACCACAATCA-CACATTTATT-TATCGCTactttacttttccaaaccca
gi|2 : AAAACGTACGTT--TTTATGCGACTTG---CGACTT---G-GAAATTTAT-TTT----TTTTCAACACATGGAATGAAGGTAAGTGATACCCTT--GTGAGGAATCGATGCGCATGG--TCATGTTCTTTCGATCTGATGCAACATATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCAAAATTATGACCGATGGATCTCAAGTTTTTAAATGGGTCCC-AAAACACGTTTTCATGGACCA-ATTTTCTCTTTAAGCATGACGTTCACTTCCGACATA-------------------------ACGATCTTTCGTTTGATATCCAGTTATT-AAAAAGGTCACACGTATTTATGACATTAGAGCTA-TTTTTCTTA-TTTGTATCACCCCACCCATCGAATTTCATAAATACCATAACTGACGAAGTA-----------------ATGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGTCAAAATACACAAATGGTTGTTCTTTTT-TTCT-----G-----CCACCCCTCTACCCCACCCCTC---ATACACACAAC---TACTAAATTAACTTTTTTTATATTTTTTAAATCAAA----TGTATAATTAAAGTTAA--ATTTA---AAA-AGCATGCTGTAAAGGCAAGGTATGTTAATAACAAAA-TAATCTTGCTGACTGCTGTTCTTCAGTTTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAATACACATATCATCGGTACCATAGCTTGATAAGGATGCTTCTTTCCC-------TTTC-TTTATTT---TATTGT-------------------ATCTTTTTTATGTTGACAATGACCCATCTCCCACAGGTATGGTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCTGCTCTGCACATTTTGCTTAT---GTAAGTTTGATACCCAATCATTAAGACGGCCAagacgagtgtaggacctcacctaaaacat
gi|3 : attttgtgtttgttctattaagttaGTCTGGTACCCTGCCCAACTTCATT-CGTTAC--------------GGTAA--------------AGTATTGGGCTGGTGCCA---------------TT-GTAAACAAACACAGAACGTGCGTTTGT------GA--TG---TGACTTCTGG-GAAAA--TC-TTTTTTATTTTCCATACATGGAACAAAAGTAAGTGATACCCTTTCGGGGAGAATCGATGCACATAG--GCATGTTCTTTTGATCTGATGCAACACATAGTACAAATGAGCTGCAATT-AGTTGTTTGCACCGAAAATATG-TCAATTGATC--AAGTTTTTAAAT--GTCCC-AAAACACGTTTTCACTGTCTATATTT--TCATTAGGCAAGGCCTTGCCTTCCAACACA---TTAT-TCTAGATAGCCCAAGTCACGACCTTTCATTTGATATCTAATTATT-AAAAAGGCCACTT----------------------TTTTTCTTA-TTT-TGTCACCCCACCCATCAAATTTCAGTA-----ATAGCTGACGAAGTATT-C-TTCCTTTCTTCAAGGA-CTCCCCCCCCCCTCCCCCTCCCCAacca
gi|3 : ttgcattttacaactttTATTCTTCCT-TTCTTCAAGGACTCCCC-CCCCCCT--CCC-CCTCCCCACA-ACACACA-CACCTACTAGATTCACTGTCTTTATATTTTT-AAATCACA----TGTATG-----ATTAA---ATTTA---AAA-AGCATGCTATTACGGAATGGATTGGTGATTACAACA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATATACATGTCATCAATACCATAGCTTAAGAAGCATGCTCCTTTCCTTTTTATATTTC-TTTATGT---TATTTTTTATAATAGAAAAAT-GAcaacacacacacctactagattcactgtctttatatttttaaatcacatgtatgattaaatttaaaaagcatgctattacggaatggattggtgattacaacataatcttgctggctgctgtccttcagtttagactagggacactgggttcgactcctaggagattaatatacatgtcatcaataccatagcttaagaagcatgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
gi|4 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagTGGCTGCTGTCCTTCAGTATAGACTAGGGACACTTGGTTCGACTCCAAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGGAGCATGGTCCTTTCCT-----T------TCTA----------GTT--CAATGGAAAAAT-AAAA--TGTATTATGATGGCATTGACCCACCTCCAATTGGTATGTTTTAA---------GCACTATACCAATGATGTTATGAGTTCGAGTCCCGTCTCTGCACATTTTA----T---GTAGATTTAATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGATTCTATTT-TATCTTATTTTTATCACATTTACCATTGGATTTATTCTACTGCTGCAAATTTCAACGCGCTTAAACGTATACTTCAATGTAAA-AATGGATAGCATGCTGTTATTGCAAGGGTTATTGATGATAAAAATAG-TCCTGTCTGAAAGATGATATCATGT-TTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATAAACTTCATCCATACCATAGCCAAAGAAGTAAAACTTGTTCATATGTACAAAACAGACCCTGCCGCTATAACAAT----------------------TACCA----TTATAGAATTATAAACACTTTTTATAGTTATCATTTTCTTACGTCta
gi|5 : tTCTGGTACCCTGCC-AA-TTCATTCCATTACTCTCCA-TTACGAAGGTCA--------------GATATT-GGCTGGCGCCATCTTAATTTCTGTTTTTTGTAAACAAACGCAGAACGTGCGTT--TAT----GA--TG---CGACTT---G-GAAAA--AA-CTT----TTTTCAACAGATGGAATAAAAGT----GATACCCTT--GTGGGCAGTCAATGCACATGG--TCATGTTCTTTCGATATAATGCAACACATAGTTCAAAGTAACTGCAATTAAAAGCTTTGCACCGAAATTATGACCGATGGATC--AAGCTTTTAAA--GGTCCC-AAAACACGTTTTCGCGTTCTA-ATTCTTTCGTTAGTCGTGGCCTTCTCTTCGGACACATTTTTTT-TCCAGATAGCCCAAGTCACGCCCTTTC----GATACCCAGTTATT-AAAAAAGCCACTCGTATTTATAAAAATATAGCTGTTTTTTCTTATTTT-TATCACCCAACCCATCGAATTTCATAAATACCATAGCTGACGAAGTA-TGC-TTTCTTTCTTCAAGGACCTTTCCAATttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|6 : ATGTAACGAGTTCGAGTCCCAGCTCTGCACATTTTTTA--T---GTAAGTTTGTTACTCAATTATTAAGAACGCCACTAGTACTTTGAAATTTGATCTGTTT-T--CTTATTTAAATCTCATCAACCATTGGATTCATTCTACTACTGCAAATGTCAGTGCGCTTAAAAGTATACTTTAATATAAATAT-GGATAGCATGCTGTTAATGCAAGGGTAATTTATGAT-AA---------------------GA-ACAATGTCTTAGATTAAGGCCAATATGCTCGATTCCTAGATG-TTGGTAAACTTCATCCATACCATAACAAAAGAATTAAAATCTGTACATATGTACAAACCAGACCCTGTTCCCATGAAGAT--------------AACCATTAT-CTGTTATTTATA----TA--------TTTGATAGTTATCATTTTCTCATGTCc
gi|7 : ga-T-ACCAAGGTCA--------------GGAATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGTGCT--TAT----GA--TG---TGACTT---G-GAAAA--AC-TTT----TTTTTAACACATGGAATAAAAGTAAGTGTAACCCTT--GTAGGGCATCAATGTACATGA--TCATGTTCTTTTGATCTGATACGTTACATAGTATAAATGAGCTGCAATTAAGTTGTCTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGATCCC-AAAACACGTTTTCAAAGTCTA-ATTTTTTCGTTAGGCGTGGCTTTCTCTTCTGACACA----TTT-TCAAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTGTT-AAAAAGGCCACTCGTATTAATGAAATTAGAGCTG-TTTTTCTTATTTT-TATCATCTCACCCATCGAATTtttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|8 : TTTCAATCTGATGCGTCACATAGTATAAATGAGCTGCAATTAAGTTGTTTGCACTGAAACAATGACCGATGGATC--AAGTTTTTAAATGGATCAC-AAAACACGTATTCGCCGTCTA-ATTTTTTCGTTAGGCGTAGCCTTCTTTTCTGACACA---TTCT-TCTAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTATTAAAAAAGGCCACTCGTATTTATGAAATTAGAACTG-TTTTTCTTA-TTTCTATCACCCCA-CCATCGAATTctaacgctgaaaatgcccacccacacacct
gi|9 : TATGACCGATGGATC--AAGATTTTAAAAGGGTCCTTAAAACACGTTTT-ACGGCCTC-ACCTTCTC--TAGGCGTGGCCTTCTCTTCTGAATAA---TTTT-TCTGGATAGCCAAAATCACGACCTTTCAGTTGATACCCTGTTATG-AAAAAATCCAC-AGTATTTATGAAACTAGAGCTG-TTTTTCTTA-TTT-TATCACCCAACCCATCGAATTTCATTAATAACATAGCTG---------T-C-TTCCTTTCTTTTAGGACCTCTCCCATTCTTTGCTTTTTTCATTTATActaacgctgaaaatgcccacccacacacat
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111
lowQualScore : 33333333333333 4444444 111 11111 222222 1111 11 1111 1 1 22222 1111 777777777777777777777 1 11111111111111111111111111111111111111 2222222 222 2222 222 222 111 1 1 333333333 111 1111 11 555555555 444444444 22222 1111 1 4444444444444 2 2 0000000000000000000 11111 1111111
lowQualScore : 6 6 2 6 22 3 99999999999999 6 3 3 5 3 66 3333333 66 777 11111 444444 0000 66 33 33 66 5 1 5 5 3 2222 5 1 2 0 5 0 5 0 0 1 0 0 44444 0000 0 222222222222222222222 1 3 22222222222222222222222222222222222222 3333333 1 1 0 888 1111 1 000 1 333 777 0 0 1 0 0 222222222 8 11 444 0 7777 0 3 00 7 7 1 333333333 4 333333333 0 0 1 00000 1 3 1 3 2 3 7777 1 1 3 2222222222222 6 6 1 6 7 1 0 1 1 5555555555555555555 7 44444 6 5555555
lowQualScore : . . . . .. . .............. . . . . . .. ....... .. ... ..... ...... .... .. .. .. .. . . . . . .... . . . . . . . . . . . . ..... .... . ..................... . . ...................................... ....... . . . ... .... . ... . ... ... . . . . . ......... . .. ... . .... . . .. . . . ......... . ......... . . . ..... . . . . . . .... . . . ............. . . . . . . . . . ................... . ..... . .......
lowQualScore : 7 7 5 5 88 5 22222222222222 7 2 3 7 9 99 8888888 99 555 88888 000000 6666 99 88 55 99 0 1 0 4 1 0000 0 1 5 2 0 4 0 0 0 4 8 8 88888 4444 6 000000000000000000000 0 3 77777777777777777777777777777777777777 2222222 0 0 2 555 2222 0 222 2 555 555 0 2 0 2 0 666666666 0 44 000 6 2222 2 5 88 3 3 0 333333333 2 222222222 2 2 0 88888 0 2 0 2 5 7 3333 0 0 3 3333333333333 7 7 0 7 3 0 7 0 0 3333333333333333333 3 33333 7 0000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T------GA--TG---CGACTT---G-GAAAA--AN-TTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGAT-AAA--AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T------GA--TG---CGACTT---G-GAAAA--AN-TTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGAT-AAAATAGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
gi|1 : GTCTGCTACCCTGTCCAACTTCATTCCGTTACCCTTCAATACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTTCGTTTTC-GTAAACAAACTCTCAAAGTACTTT--TCA----GA--TG---CAACAT---A-GACA------TTT----TTATCAATACATGGAGCAAAAGTATGTGATACCGTT--GTGGGGAATCAATGCACATGA--TCATATTCTTTCGATCTGATGTAACACATTGTACAAATTAACTGCAAT-AAGTTGTTTGCAATGAAATTATGACCGATGGGTC--AAGTTTTTAAATGGATCCG-AAAACACGTTTTCACGGCCTA-ATTTTCTTATTAAGCGTGGCCATCTCTTCTGACACA---TTTT-TCTGGATAGCCCAAGGCACGAGCTTTCGTTTGATACCAAGTTATT-AAAAAGGTCATTCATATTTATAAAATTAGAGCTG-TTTTG-TTA-TTT-TATCACCCCATCCATCGAATTTTATTTATACCATAACTGACGAAGTA-T-GGTTCCTTTC---AAGGACCTCTTCAATTCCTTGCTTTCTTCGTTTATAC---------------------TTATTTGCCAGAATACAAAGATGATTGTCCTTTTTGTTTT-----G-----C------------------------A-ACACA-A-C---TACTAGCTTAACATTATTTATATTT---AAATCACA----TGTTTA--CAAAATAAT--ATTTA---AAA-AGCATGTTATTAAGGCATGGTTTGTTGATGACAAAA-TAATCTTGCTGTCTGATGTCCTTCAGTTTAAACGATGGACACTGGGTTCGACTCCTAGGAGATTAATACACACGTCATCAAAACCATAGTTTTAGAAGCATGTTTCTTTCTT-----TATTTC-TTTATTT---TATTTTT--CAATGGTAAAATGAAAATCTTTTTAATGTTGACATTGACCCACC-CCCACAGGTATGCTTTAGGTTATTTATGCACTATGTCTATGATGTTATGTGTTCCAGTCCCAGCTTTGCATAGTTTGT---TAAAATAAGTTTGATACCCAGTTATTAAGATGGCCAATCATACTGTGAAATTGGAGCTGTTTGT-TTTTATTTATATCACCTCAACCATTACATTCA-TCTACCGCTACAAATGTCAGGGAGCTTAAACATATACTTTAATGTAAA-AA-GGATAGCATGCTGTTACTGAAAGGGTGGTTGATGAT-AAATAAGTTCTGTCGGAAAGATGAGATCATGTCTTAGGCTAAGGACAGTAGGCTCGACTCCATGGTGTTTGAT-AACTTCATCCATACCATAGCTAAAGAGGTAAAACCTGTACATATGTACAAACAAGACCCTGTTGTCATCAATATTTTCTGCTCTGTTAAA-TGTTATACGATTGTTTACAGAATTATAAACA-TTTTTATAGTCATTATTTT
gi|10 : tgctattttcctgccaaactgataCCGTTACCCTCAATTACGAAGGTCAAGTATTGGAGGCTAGGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAAC------------TC--T-------A--TG---CAACAT---A-AAAAATTAA-TTG----TTTTCAATACATGGAGCAAAAATAAGTGACACCGTT--ATGGGGAATCAATGCACATGA--TCATATTCTTTCGATCTGATGCAACACATAGTACAAATGAACTGCAATTAAGTTGTTTGCACTGAAATTATGACCGATGGGTC--AAGTTTTTAAATGtatgtc
gi|11 : -ACACAC--C---TGCTAGCTTCACTTTCCTTATATTA---AAATCACAACCATGCTTA--CAAAACAATCAATTTATAAAAACAACATGCTATTTAGGTATGGATTGTTGATGAAAAAAATAATCTTTCTAGGTGCTGTCCTTCAGTCTAGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAATAC----GTCA---ATACCATAGCTTTAGAAGC
gi|12 : AATGGGTCCA-ATAACACGTTTTCACGGCCTA-ATTTTCTTATTAGGCGTGGCCATCTCTTCTGACACA---TTTTTTCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCTAGTTATT-AAAAAGGCCACTCGTTTTTATGAAATTAGAGCTG--TTTTCTTA-TTG-TAct
gi|13 : TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T-------A--TGAAATGACTT---A-GAAAA--AACTTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA---CCATCCGACCTGAT
gi|14 : cagatatcggctTCA--------------GATATC-GGCT-------------TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T-------A--TGAAATGACTT---ATGAAAA--A-----------TTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA---CCATCCGACCTGATc
gi|15 : GAGATTAATACATGTGTCATCGACACCATAGCTTTAGAAGCATGCTTCTTTTTT-----TA--TCATTTATTTGAATATTTc
gi|16 : TGAAGGTAGAGCTGTTT-T-T-TTAAATATATCACCACAATCA-CACATTTATT-TATCGCTactttacttttccaaaccca
gi|2 : AAAACGTACGTT--TTTATGCGACTTG---CGACTT---G-GAAATTTAT-TTT----TTTTCAACACATGGAATGAAGGTAAGTGATACCCTT--GTGAGGAATCGATGCGCATGG--TCATGTTCTTTCGATCTGATGCAACATATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCAAAATTATGACCGATGGATCTCAAGTTTTTAAATGGGTCCC-AAAACACGTTTTCATGGACCA-ATTTTCTCTTTAAGCATGACGTTCACTTCCGACATA-------------------------ACGATCTTTCGTTTGATATCCAGTTATT-AAAAAGGTCACACGTATTTATGACATTAGAGCTA-TTTTTCTTA-TTTGTATCACCCCACCCATCGAATTTCATAAATACCATAACTGACGAAGTA-----------------ATGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGTCAAAATACACAAATGGTTGTTCTTTTT-TTCT-----G-----CCACCCCTCTACCCCACCCCTC---ATACACACAAC---TACTAAATTAACTTTTTTTATATTTTTTAAATCAAA----TGTATAATTAAAGTTAA--ATTTA---AAA-AGCATGCTGTAAAGGCAAGGTATGTTAATAACAAAA-TAATCTTGCTGACTGCTGTTCTTCAGTTTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAATACACATATCATCGGTACCATAGCTTGATAAGGATGCTTCTTTCCC-------TTTC-TTTATTT---TATTGT-------------------ATCTTTTTTATGTTGACAATGACCCATCTCCCACAGGTATGGTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCTGCTCTGCACATTTTGCTTAT---GTAAGTTTGATACCCAATCATTAAGACGGCCAagacgagtgtaggacctcacctaaaacat
gi|3 : attttgtgtttgttctattaagttaGTCTGGTACCCTGCCCAACTTCATTC-GTTAC-------------GGTAA--------------AGTATTGGGCTGGTGCCA---------------TT-GTAAACAAACACAGAACGTGCGTTTGT------GA--TG---TGACTTCTGG-GAAAA--TC-TTTTTTATTTTCCATACATGGAACAAAAGTAAGTGATACCCTTTCGGGGAGAATCGATGCACATAG--GCATGTTCTTTTGATCTGATGCAACACATAGTACAAATGAGCTGCAATT-AGTTGTTTGCACCGAAAATATG-TCAATTGATC--AAGTTTTTAAAT--GTCCC-AAAACACGTTTTCACTGTCTATATTT--TCATTAGGCAAGGCCTTGCCTTCCAACACA---TTAT-TCTAGATAGCCCAAGTCACGACCTTTCATTTGATATCTAATTATT-AAAAAGGCCACTT----------------------TTTTTCTTA-TTT-TGTCACCCCACCCATCAAATTTCAGTA-----ATAGCTGACGAAGTATT-C-TTCCTTTCTTCAAGGA-CTCCCCCCCCCCTCCCCCTCCCCAacca
gi|3 : ttgcattttacaactttTATTCTTCCT-TTCTTCAAGGACTCCCC-CCCCCCT--CCC-CCTCCCCACA-ACACACA-CACCTACTAGATTCACTGTCTTTATATTTTT-AAATCACA----TGTATG-----ATTAA---ATTTA---AAA-AGCATGCTATTACGGAATGGATTGGTGATTACAACA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATATACATGTCATCAATACCATAGCTTAAGAAGCATGCTCCTTTCCTTTTTATATTTC-TTTATGT---TATTTTTTATAATAGAAAAAT-GAcaacacacacacctactagattcactgtctttatatttttaaatcacatgtatgattaaatttaaaaagcatgctattacggaatggattggtgattacaacataatcttgctggctgctgtccttcagtttagactagggacactgggttcgactcctaggagattaatatacatgtcatcaataccatagcttaagaagcatgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
gi|4 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagTGGCTGCTGTCCTTCAGTATAGACTAGGGACACTTGGTTCGACTCCAAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGGAGCATGGTCCTTTCCT-----T------TCTA----------GTT--CAATGGAAAAAT-AAAA--TGTATTATGATGGCATTGACCCACCTCCAATTGGTATGTTTTAA---------GCACTATACCAATGATGTTATGAGTTCGAGTCCCGTCTCTGCACATTTTA----T---GTAGATTTAATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGATTCTATTT-TATCTTATTTTTATCACATTTACCATTGGATTTATTCTACTGCTGCAAATTTCAACGCGCTTAAACGTATACTTCAATGTAAA-AATGGATAGCATGCTGTTATTGCAAGGGTTATTGATGATAAAAATAGTCCTGTCTGAAAGATGATATCATGT-TTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATAAACTTCATCCATACCATAGCCAAAGAAGTAAAACTTGTTCATATGTACAAAACAGACCCTGCCGCTATAACAAT----------------------TACCA----TTATAGAATTATAAACACTTTTTATAGTTATCATTTTCTTACGTCta
gi|5 : tTCTGGTACCCTGCC-AA-TTCATTCCATTACTCTCCATTACGAAGGTCA--------------GATATT-GGCTGGCGCCATCTTAATTTCTGTTTTTTGTAAACAAACGCAGAACGTGCGTT--TAT----GA--TG---CGACTT---G-GAAAA--AA-CTT----TTTTCAACAGATGGAATAAAAGT----GATACCCTT--GTGGGCAGTCAATGCACATGG--TCATGTTCTTTCGATATAATGCAACACATAGTTCAAAGTAACTGCAATTAAAAGCTTTGCACCGAAATTATGACCGATGGATC--AAGCTTTTAAA--GGTCCC-AAAACACGTTTTCGCGTTCTA-ATTCTTTCGTTAGTCGTGGCCTTCTCTTCGGACACATTTTTTT-TCCAGATAGCCCAAGTCACGCCCTTTC----GATACCCAGTTATT-AAAAAAGCCACTCGTATTTATAAAAATATAGCTGTTTTTTCTTATTTT-TATCACCCAACCCATCGAATTTCATAAATACCATAGCTGACGAAGTA-TGC-TTTCTTTCTTCAAGGACCTTTCCAATttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|6 : ATGTAACGAGTTCGAGTCCCAGCTCTGCACATTTTTTA--T---GTAAGTTTGTTACTCAATTATTAAGAACGCCACTAGTACTTTGAAATTTGATCTGTTT-T--CTTATTTAAATCTCATCAACCATTGGATTCATTCTACTACTGCAAATGTCAGTGCGCTTAAAAGTATACTTTAATATAAATAT-GGATAGCATGCTGTTAATGCAAGGGTAATTTATGAT-AA--------------------GA-ACAATGTCTTAGATTAAGGCCAATATGCTCGATTCCTAGATG-TTGGTAAACTTCATCCATACCATAACAAAAGAATTAAAATCTGTACATATGTACAAACCAGACCCTGTTCCCATGAAGAT--------------AACCATTAT-CTGTTATTTATA----TA--------TTTGATAGTTATCATTTTCTCATGTCc
gi|7 : gaTACCAAGGTCA--------------GGAATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGTGCT--TAT----GA--TG---TGACTT---G-GAAAA--AC-TTT----TTTTTAACACATGGAATAAAAGTAAGTGTAACCCTT--GTAGGGCATCAATGTACATGA--TCATGTTCTTTTGATCTGATACGTTACATAGTATAAATGAGCTGCAATTAAGTTGTCTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGATCCC-AAAACACGTTTTCAAAGTCTA-ATTTTTTCGTTAGGCGTGGCTTTCTCTTCTGACACA----TTT-TCAAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTGTT-AAAAAGGCCACTCGTATTAATGAAATTAGAGCTG-TTTTTCTTATTTT-TATCATCTCACCCATCGAATTtttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|8 : TTTCAATCTGATGCGTCACATAGTATAAATGAGCTGCAATTAAGTTGTTTGCACTGAAACAATGACCGATGGATC--AAGTTTTTAAATGGATCAC-AAAACACGTATTCGCCGTCTA-ATTTTTTCGTTAGGCGTAGCCTTCTTTTCTGACACA---TTCT-TCTAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTATTAAAAAAGGCCACTCGTATTTATGAAATTAGAACTG-TTTTTCTTA-TTTCTATCACCCCA-CCATCGAATTctaacgctgaaaatgcccacccacacacct
gi|9 : TATGACCGATGGATC--AAGATTTTAAAAGGGTCCTTAAAACACGTTTT-ACGGCCTC-ACCTTCTC--TAGGCGTGGCCTTCTCTTCTGAATAA---TTTT-TCTGGATAGCCAAAATCACGACCTTTCAGTTGATACCCTGTTATG-AAAAAATCCAC-AGTATTTATGAAACTAGAGCTG-TTTTTCTTA-TTT-TATCACCCAACCCATCGAATTTCATTAATAACATAGCTG---------T-C-TTCCTTTCTTTTAGGACCTCTCCCATTCTTTGCTTTTTTCATTTATActaacgctgaaaatgcccacccacacacat
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111
lowQualScore : 33333333333333 555555555 111 11111 222222 1111 11 1111 1 1 22222 1111 777777777777777777777 1 11111111111111111111111111111111111111 2222222 222 2222 222 222 111 1 1 333333333 111 1111 11 555555555 444444444 22222 1111 6666666666666666 2 2 0000000000000000000 11111 1111111
lowQualScore : 6 6 2 6 22 3 99999999999999 6 3333 5 3 000000000 66 777 11111 444444 0000 66 33 33 66 5 1 5 5 3 2222 5 1 2 0 5 0 5 0 0 1 0 0 44444 0000 0 222222222222222222222 1 3 22222222222222222222222222222222222222 3333333 1 1 0 888 1111 1 000 1 333 777 0 0 1 0 0 222222222 8 11 444 0 7777 0 3 00 7 7 1 333333333 4 333333333 0 0 1 00000 1 3 1 3 2 3 7777 1 1 8888888888888888 6 6 1 6 7 1 0 1 1 5555555555555555555 7 44444 6 5555555
lowQualScore : . . . . .. . .............. . .... . . ......... .. ... ..... ...... .... .. .. .. .. . . . . . .... . . . . . . . . . . . . ..... .... . ..................... . . ...................................... ....... . . . ... .... . ... . ... ... . . . . . ......... . .. ... . .... . . .. . . . ......... . ......... . . . ..... . . . . . . .... . . ................ . . . . . . . . . ................... . ..... . .......
lowQualScore : 7 7 5 5 88 5 22222222222222 7 8888 7 9 666666666 99 555 88888 000000 6666 99 88 55 99 0 1 0 4 1 0000 0 1 5 2 0 4 0 0 0 4 8 8 88888 4444 6 000000000000000000000 0 3 77777777777777777777777777777777777777 2222222 0 0 2 555 2222 0 222 2 555 555 0 2 0 2 0 666666666 0 44 000 6 2222 2 5 88 3 3 0 333333333 2 222222222 2 2 0 88888 0 2 0 2 5 7 3333 0 0 7777777777777777 7 7 0 7 3 0 7 0 0 3333333333333333333 3 33333 7 0000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT------G--A--TG---CGACTT---G-GAAAA--AN-TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT------G--A--TG---CGACTT---G-GAAAA--AN-TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
gi|1 : GTCTGCTACCCTGTCCAACTTCATTCCGTTACCCTTCAATACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTTCGTTTTC-GTAAACAAACTCTCAAAGTACTTTTCA----G--A--TG---CAACAT---A-GACA------TTTTTA----TCAATACATGGAGCAAAAGTATGTGATACCGTTGTGGGGA--ATCAATGCACATGA--TCATATTCTTTCGATCTGATGTAACACATTGTACAAATTAACTGCAAT-AAGTTGTTTGCAATGAAATTATGACCGATGGGTC--AAGTTTTTAAATGGATCCG-AAAACACGTTTTCACGGCCTA-ATTTTCTTATTAAGCGTGGCCATCTCTTCTGACACA---TTTT-TCTGGATAGCCCAAGGCACGAGCTTTCGTTTGATACCAAGTTATT-AAAAAGGTCATTCATATTTATAAAATTAGAGCTG-TTTTG-TTA-TTT-TATCACCCCATCCATCGAATTTTATTTATACCATAACTGACGAAGTA-T-GGTTCCTTTC---AAGGACCTCTTCAATTCCTTGCTTTCTTCGTTTATAC---------------------TTATTTGCCAGAATACAAAGATGATTGTCCTTTTTGTTTT-----G-----C------------------------A-ACACA-A-C---TACTAGCTTAACATTATTTATATTT---AAATCACA----TGTTTA--CAAAATAAT--ATTTA---AAA-AGCATGTTATTAAGGCATGGTTTGTTGATGACAAAA-TAATCTTGCTGTCTGATGTCCTTCAGTTTAAACGATGGACACTGGGTTCGACTCCTAGGAGATTAATACACACGTCATCAAAACCATAGTTTTAGAAGCATGTTTCTTTCTT-----TATTTC-TTTATTT---TATTTTT--CAATGGTAAAATGAAAATCTTTTTAATGTTGACATTGACCCACC-CCCACAGGTATGCTTTAGGTTATTTATGCACTATGTCTATGATGTTATGTGTTCCAGTCCCAGCTTTGCATAGTTTGT---TAAAATAAGTTTGATACCCAGTTATTAAGATGGCCAATCATACTGTGAAATTGGAGCTGTTTGT-TTTTATTTATATCACCTCAACCATTACATTCA-TCTACCGCTACAAATGTCAGGGAGCTTAAACATATACTTTAATGTAAA-AA-GGATAGCATGCTGTTACTGAAAGGGTGGTTGATGATAAATA---AGTTCTGTCGGAAAGATGAGATCATGTCTTAGGCTAAGGACAGTAGGCTCGACTCCATGGTGTTTGAT-AACTTCATCCATACCATAGCTAAAGAGGTAAAACCTGTACATATGTACAAACAAGACCCTGTTGTCATCAATATTTTCTGCTCTGTTAAA-TGTTATACGATTGTTTACAGAATTATAAACA-TTTTTATAGTCATTATTTT
gi|10 : tgctattttcctgccaaactgataCCGTTACCCTCAATTACGAAGGTCAAGTATTGGAGGCTAGGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAAC------------TCT---------A--TG---CAACAT---A-AAAAATTAA-TTGTTT----TCAATACATGGAGCAAAAATAAGTGACACCGTTATGGGGA--ATCAATGCACATGA--TCATATTCTTTCGATCTGATGCAACACATAGTACAAATGAACTGCAATTAAGTTGTTTGCACTGAAATTATGACCGATGGGTC--AAGTTTTTAAATGtatgtc
gi|11 : -ACACAC--C---TGCTAGCTTCACTTTCCTTATATTA---AAATCACAACCATGCTTA--CAAAACAATCAATTTATAAAAACAACATGCTATTTAGGTATGGATTGTTGATGAAAAAAATAATCTTTCTAGGTGCTGTCCTTCAGTCTAGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAATAC----GTCA---ATACCATAGCTTTAGAAGC
gi|12 : AATGGGTCCA-ATAACACGTTTTCACGGCCTA-ATTTTCTTATTAGGCGTGGCCATCTCTTCTGACACA---TTTTTTCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCTAGTTATT-AAAAAGGCCACTCGTTTTTATGAAATTAGAGCTG--TTTTCTTA-TTG-TAct
gi|13 : TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT---------A--TGAAATGACTT---A-GAAAA--AACTTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGTACACGGTTTCA---CCATCCGACCTGAT
gi|14 : cagatatcggctTCA--------------GATATCGG-CT-------------TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT---------A--TGAAATGACTT---ATGAAAA--A-------T----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGTACACGGTTTCA---CCATCCGACCTGATc
gi|15 : GAGATTAATACATGTGTCATCGACACCATAGCTTTAGAAGCATGCTTCTTTTTT-----TA--TCATTTATTTGAATATTTc
gi|16 : TGAAGGTAGAGCTGTTT-T-T-TTAAATATATCACCACAATCA-CACATTTATT-TATCGCTactttacttttccaaaccca
gi|2 : AAAACGTACGTTTTTATGCG--ACTTG---CGACTT---G-GAAATTTAT-TTTTTT----TCAACACATGGAATGAAGGTAAGTGATACCCTTGTGAGGA--ATCGATGCGCATGG--TCATGTTCTTTCGATCTGATGCAACATATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCAAAATTATGACCGATGGATCTCAAGTTTTTAAATGGGTCCC-AAAACACGTTTTCATGGACCA-ATTTTCTCTTTAAGCATGACGTTCACTTCCGACATA-------------------------ACGATCTTTCGTTTGATATCCAGTTATT-AAAAAGGTCACACGTATTTATGACATTAGAGCTA-TTTTTCTTA-TTTGTATCACCCCACCCATCGAATTTCATAAATACCATAACTGACGAAGTA-----------------ATGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGTCAAAATACACAAATGGTTGTTCTTTTT-TTCT-----G-----CCACCCCTCTACCCCACCCCTC---ATACACACAAC---TACTAAATTAACTTTTTTTATATTTTTTAAATCAAA----TGTATAATTAAAGTTAA--ATTTA---AAA-AGCATGCTGTAAAGGCAAGGTATGTTAATAACAAAA-TAATCTTGCTGACTGCTGTTCTTCAGTTTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAATACACATATCATCGGTACCATAGCTTGATAAGGATGCTTCTTTCCC-------TTTC-TTTATTT---TATTGT-------------------ATCTTTTTTATGTTGACAATGACCCATCTCCCACAGGTATGGTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCTGCTCTGCACATTTTGCTTAT---GTAAGTTTGATACCCAATCATTAAGACGGCCAagacgagtgtaggacctcacctaaaacat
gi|3 : attttgtgtttgttctattaagttaGTCTGGTACCCTGCCCAACTTCATTC-GTTAC-------------GGTAA--------------AGTATTGGGCTGGTGCCAT---------------T-GTAAACAAACACAGAACGTGCGTTT------GTGA--TG---TGACTTCTGG-GAAAA--TC-TTTTTTATTTTCCATACATGGAACAAAAGTAAGTGATACCCTTTCGGGGAGAATCGATGCACATAG--GCATGTTCTTTTGATCTGATGCAACACATAGTACAAATGAGCTGCAATTA-GTTGTTTGCACCGAAAATATG-TCAATTGATC--AAGTTTTTAAATG--TCCC-AAAACACGTTTTCACTGTCTATATTTTC--ATTAGGCAAGGCCTTGCCTTCCAACACA---TTAT-TCTAGATAGCCCAAGTCACGACCTTTCATTTGATATCTAATTATT-AAAAAGGCCACTT----------------------TTTTTCTTA-TTT-TGTCACCCCACCCATCAAATTTCAGTA-----ATAGCTGACGAAGTATT-C-TTCCTTTCTTCAAGGA-CTCCCCCCCCCCTCCCCCTCCCCAacca
gi|3 : ttgcattttacaactttTATTCTTCCT-TTCTTCAAGGACTCCCC-CCCCCCT--CCC-CCTCCCCACA-ACACACA-CACCTACTAGATTCACTGTCTTTATATTTTT-AAATCACA----TGTATG-----ATTAA---ATTTA---AAA-AGCATGCTATTACGGAATGGATTGGTGATTACAACA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATATACATGTCATCAATACCATAGCTTAAGAAGCATGCTCCTTTCCTTTTTATATTTC-TTTATGT---TATTTTTTATAATAGAAAAAT-GAcaacacacacacctactagattcactgtctttatatttttaaatcacatgtatgattaaatttaaaaagcatgctattacggaatggattggtgattacaacataatcttgctggctgctgtccttcagtttagactagggacactgggttcgactcctaggagattaatatacatgtcatcaataccatagcttaagaagcatgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
gi|4 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagTGGCTGCTGTCCTTCAGTATAGACTAGGGACACTTGGTTCGACTCCAAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGGAGCATGGTCCTTTCCT-----T------TCTA----------GTT--CAATGGAAAAAT-AAAA--TGTATTATGATGGCATTGACCCACCTCCAATTGGTATGTTTTAA---------GCACTATACCAATGATGTTATGAGTTCGAGTCCCGTCTCTGCACATTTTA----T---GTAGATTTAATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGATTCTATTT-TATCTTATTTTTATCACATTTACCATTGGATTTATTCTACTGCTGCAAATTTCAACGCGCTTAAACGTATACTTCAATGTAAA-AATGGATAGCATGCTGTTATTGCAAGGGTTATTGATGATAA--AAATAGTCCTGTCTGAAAGATGATATCATGT-TTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATAAACTTCATCCATACCATAGCCAAAGAAGTAAAACTTGTTCATATGTACAAAACAGACCCTGCCGCTATAACAAT----------------------TACCA----TTATAGAATTATAAACACTTTTTATAGTTATCATTTTCTTACGTCta
gi|5 : tTCTGGTACCCTGCC-AA-TTCATTCCATTACTCTCCATTACGAAGGTCA--------------GATATTGG-CTGGCGCCATCTTAATTTCTGTTTTTTGTAAACAAACGCAGAACGTGCGTTTAT----G--A--TG---CGACTT---G-GAAAA--AA-CTTTTT----TCAACAGATGGAATAAAAGT----GATACCCTTGTGGGCA--GTCAATGCACATGG--TCATGTTCTTTCGATATAATGCAACACATAGTTCAAAGTAACTGCAATTAAAAGCTTTGCACCGAAATTATGACCGATGGATC--AAGCTTTTAAA--GGTCCC-AAAACACGTTTTCGCGTTCTA-ATTCTTTCGTTAGTCGTGGCCTTCTCTTCGGACACATTTTTTT-TCCAGATAGCCCAAGTCACGCCCTTTC----GATACCCAGTTATT-AAAAAAGCCACTCGTATTTATAAAAATATAGCTGTTTTTTCTTATTTT-TATCACCCAACCCATCGAATTTCATAAATACCATAGCTGACGAAGTA-TGC-TTTCTTTCTTCAAGGACCTTTCCAATttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|6 : ATGTAACGAGTTCGAGTCCCAGCTCTGCACATTTTTTA--T---GTAAGTTTGTTACTCAATTATTAAGAACGCCACTAGTACTTTGAAATTTGATCTGTTT-T--CTTATTTAAATCTCATCAACCATTGGATTCATTCTACTACTGCAAATGTCAGTGCGCTTAAAAGTATACTTTAATATAAATAT-GGATAGCATGCTGTTAATGCAAGGGTAATTTATGATAA-----------------------GA-ACAATGTCTTAGATTAAGGCCAATATGCTCGATTCCTAGATG-TTGGTAAACTTCATCCATACCATAACAAAAGAATTAAAATCTGTACATATGTACAAACCAGACCCTGTTCCCATGAAGAT--------------AACCATTAT-CTGTTATTTATA----TA--------TTTGATAGTTATCATTTTCTCATGTCc
gi|7 : gaTACCAAGGTCA--------------GGAATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGTGCTTAT----G--A--TG---TGACTT---G-GAAAA--AC-TTTTTT----TTAACACATGGAATAAAAGTAAGTGTAACCCTTGTAGGGC--ATCAATGTACATGA--TCATGTTCTTTTGATCTGATACGTTACATAGTATAAATGAGCTGCAATTAAGTTGTCTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGATCCC-AAAACACGTTTTCAAAGTCTA-ATTTTTTCGTTAGGCGTGGCTTTCTCTTCTGACACA----TTT-TCAAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTGTT-AAAAAGGCCACTCGTATTAATGAAATTAGAGCTG-TTTTTCTTATTTT-TATCATCTCACCCATCGAATTtttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|8 : TTTCAATCTGATGCGTCACATAGTATAAATGAGCTGCAATTAAGTTGTTTGCACTGAAACAATGACCGATGGATC--AAGTTTTTAAATGGATCAC-AAAACACGTATTCGCCGTCTA-ATTTTTTCGTTAGGCGTAGCCTTCTTTTCTGACACA---TTCT-TCTAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTATTAAAAAAGGCCACTCGTATTTATGAAATTAGAACTG-TTTTTCTTA-TTTCTATCACCCCA-CCATCGAATTctaacgctgaaaatgcccacccacacacct
gi|9 : TATGACCGATGGATC--AAGATTTTAAAAGGGTCCTTAAAACACGTTTT-ACGGCCTC-ACCTTCTC--TAGGCGTGGCCTTCTCTTCTGAATAA---TTTT-TCTGGATAGCCAAAATCACGACCTTTCAGTTGATACCCTGTTATG-AAAAAATCCAC-AGTATTTATGAAACTAGAGCTG-TTTTTCTTA-TTT-TATCACCCAACCCATCGAATTTCATTAATAACATAGCTG---------T-C-TTCCTTTCTTTTAGGACCTCTCCCATTCTTTGCTTTTTTCATTTATActaacgctgaaaatgcccacccacacacat
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111
lowQualScore : 33333333333333 555555555 111 11111 222222 1111 11 1111 1 1 22222 1111 777777777777777777777 1 11111111111111111111111111111111111111 2222222 222 2222 222 222 111 1 1 333333333 111 1111 11 555555555 444444444 22222 1111 6666666666666666 2 2 0000000000000000000 11111 1111111
lowQualScore : 6 6 2 6 22 3 99999999999999 6 3333 5 3 000000000 66 777 11111 444444 0000 66 33 33 66 5 1 5 5 3 2222 5 1 2 0 5 0 5 0 0 1 0 0 44444 0000 0 222222222222222222222 1 3 22222222222222222222222222222222222222 3333333 1 1 0 888 1111 1 000 1 333 777 0 0 1 0 0 222222222 8 11 444 0 7777 0 3 00 7 7 1 333333333 4 333333333 0 0 1 00000 1 3 1 3 2 3 7777 1 1 8888888888888888 6 6 1 6 7 1 0 1 1 5555555555555555555 7 44444 6 5555555
lowQualScore : . . . . .. . .............. . .... . . ......... .. ... ..... ...... .... .. .. .. .. . . . . . .... . . . . . . . . . . . . ..... .... . ..................... . . ...................................... ....... . . . ... .... . ... . ... ... . . . . . ......... . .. ... . .... . . .. . . . ......... . ......... . . . ..... . . . . . . .... . . ................ . . . . . . . . . ................... . ..... . .......
lowQualScore : 7 7 5 5 88 5 22222222222222 7 8888 7 9 666666666 99 555 88888 000000 6666 99 88 55 99 0 1 0 4 1 0000 0 1 5 2 0 4 0 0 0 4 8 8 88888 4444 6 000000000000000000000 0 3 77777777777777777777777777777777777777 2222222 0 0 2 555 2222 0 222 2 555 555 0 2 0 2 0 666666666 0 44 000 6 2222 2 5 88 3 3 0 333333333 2 222222222 2 2 0 88888 0 2 0 2 5 7 3333 0 0 7777777777777777 7 7 0 7 3 0 7 0 0 3333333333333333333 3 33333 7 0000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT------G--A--TG---CGACTT---G-GAAAA--AN-TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT------G--A--TG---CGACTT---G-GAAAA--AN-TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
gi|1 : GTCTGCTACCCTGTCCAACTTCATTCCGTTACCCTTCAATACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTTCGTTTTC-GTAAACAAACTCTCAAAGTACTTTTCA----G--A--TG---CAACAT---A-GACA------TTTTTA----TCAATACATGGAGCAAAAGTATGTGATACCGTTGTGGGGA--ATCAATGCACATGA--TCATATTCTTTCGATCTGATGTAACACATTGTACAAATTAACTGCAAT-AAGTTGTTTGCAATGAAATTATGACCGATGGGTC--AAGTTTTTAAATGGATCCG-AAAACACGTTTTCACGGCCTA-ATTTTCTTATTAAGCGTGGCCATCTCTTCTGACACA---TTTT-TCTGGATAGCCCAAGGCACGAGCTTTCGTTTGATACCAAGTTATT-AAAAAGGTCATTCATATTTATAAAATTAGAGCTG-TTTTG-TTA-TTT-TATCACCCCATCCATCGAATTTTATTTATACCATAACTGACGAAGTA-T-GGTTCCTTTC---AAGGACCTCTTCAATTCCTTGCTTTCTTCGTTTATAC---------------------TTATTTGCCAGAATACAAAGATGATTGTCCTTTTTGTTTT-----G-----C------------------------A-ACACA-A-C---TACTAGCTTAACATTATTTATATTT---AAATCACA----TGTTTA--CAAAATAAT--ATTTA---AAA-AGCATGTTATTAAGGCATGGTTTGTTGATGACAAAA-TAATCTTGCTGTCTGATGTCCTTCAGTTTAAACGATGGACACTGGGTTCGACTCCTAGGAGATTAATACACACGTCATCAAAACCATAGTTTTAGAAGCATGTTTCTTTCTT-----TATTTC-TTTATTT---TATTTTT--CAATGGTAAAATGAAAATCTTTTTAATGTTGACATTGACCCACC-CCCACAGGTATGCTTTAGGTTATTTATGCACTATGTCTATGATGTTATGTGTTCCAGTCCCAGCTTTGCATAGTTTGT---TAAAATAAGTTTGATACCCAGTTATTAAGATGGCCAATCATACTGTGAAATTGGAGCTGTTTGT-TTTTATTTATATCACCTCAACCATTACATTCA-TCTACCGCTACAAATGTCAGGGAGCTTAAACATATACTTTAATGTAAA-AA-GGATAGCATGCTGTTACTGAAAGGGTGGTTGATGATAAATA---AGTTCTGTCGGAAAGATGAGATCATGTCTTAGGCTAAGGACAGTAGGCTCGACTCCATGGTGTTTGAT-AACTTCATCCATACCATAGCTAAAGAGGTAAAACCTGTACATATGTACAAACAAGACCCTGTTGTCATCAATATTTTCTGCTCTGTTAAA-TGTTATACGATTGTTTACAGAATTATAAACA-TTTTTATAGTCATTATTTT
gi|10 : tgctattttcctgccaaactgataCCGTTACCCTCAATTACGAAGGTCAAGTATTGGAGGCTAGGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAAC------------TCT---------A--TG---CAACAT---A-AAAAATTAA-TTGTTT----TCAATACATGGAGCAAAAATAAGTGACACCGTTATGGGGA--ATCAATGCACATGA--TCATATTCTTTCGATCTGATGCAACACATAGTACAAATGAACTGCAATTAAGTTGTTTGCACTGAAATTATGACCGATGGGTC--AAGTTTTTAAATGtatgtc
gi|11 : -ACACAC--C---TGCTAGCTTCACTTTCCTTATATTA---AAATCACAACCATGCTTA--CAAAACAATCAATTTATAAAAACAACATGCTATTTAGGTATGGATTGTTGATGAAAAAAATAATCTTTCTAGGTGCTGTCCTTCAGTCTAGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAATAC----GTCA---ATACCATAGCTTTAGAAGC
gi|12 : AATGGGTCCA-ATAACACGTTTTCACGGCCTA-ATTTTCTTATTAGGCGTGGCCATCTCTTCTGACACA---TTTTTTCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCTAGTTATT-AAAAAGGCCACTCGTTTTTATGAAATTAGAGCTG--TTTTCTTA-TTG-TAct
gi|13 : TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT---------A--TGAAATGACTT---A-GAAAA--AACTTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGTACACGGTTTCA---CCATCCGACCTGAT
gi|14 : cagatatcggctTCA--------------GATATCGG-CT-------------TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT---------A--TGAAATGACTT---ATGAAAA--A-------T----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGTACACGGTTTCA---CCATCCGACCTGATc
gi|15 : GAGATTAATACATGTGTCATCGACACCATAGCTTTAGAAGCATGCTTCTTTTTT-----TA--TCATTTATTTGAATATTTc
gi|16 : TGAAGGTAGAGCTGTTT-T-T-TTAAATATATCACCACAATCA-CACATTTATT-TATCGCTactttacttttccaaaccca
gi|2 : AAAACGTACGTTTTTATGCG--ACTTG---CGACTT---G-GAAATTTAT-TTTTTT----TCAACACATGGAATGAAGGTAAGTGATACCCTTGTGAGGA--ATCGATGCGCATGG--TCATGTTCTTTCGATCTGATGCAACATATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCAAAATTATGACCGATGGATCTCAAGTTTTTAAATGGGTCCC-AAAACACGTTTTCATGGACCA-ATTTTCTCTTTAAGCATGACGTTCACTTCCGACATA-------------------------ACGATCTTTCGTTTGATATCCAGTTATT-AAAAAGGTCACACGTATTTATGACATTAGAGCTA-TTTTTCTTA-TTTGTATCACCCCACCCATCGAATTTCATAAATACCATAACTGACGAAGTA-----------------ATGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGTCAAAATACACAAATGGTTGTTCTTTTT-TTCT-----G-----CCACCCCTCTACCCCACCCCTC---ATACACACAAC---TACTAAATTAACTTTTTTTATATTTTTTAAATCAAA----TGTATAATTAAAGTTAA--ATTTA---AAA-AGCATGCTGTAAAGGCAAGGTATGTTAATAACAAAA-TAATCTTGCTGACTGCTGTTCTTCAGTTTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAATACACATATCATCGGTACCATAGCTTGATAAGGATGCTTCTTTCCC-------TTTC-TTTATTT---TATTGT-------------------ATCTTTTTTATGTTGACAATGACCCATCTCCCACAGGTATGGTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCTGCTCTGCACATTTTGCTTAT---GTAAGTTTGATACCCAATCATTAAGACGGCCAagacgagtgtaggacctcacctaaaacat
gi|3 : attttgtgtttgttctattaagttaGTCTGGTACCCTGCCCAACTTCATTC-GTTAC-------------GGTAA--------------AGTATTGGGCTGGTGCCAT---------------T-GTAAACAAACACAGAACGTGCGTTT------GTGA--TG---TGACTTCTGG-GAAAA--TC-TTTTTTATTTTCCATACATGGAACAAAAGTAAGTGATACCCTTTCGGGGAGAATCGATGCACATAG--GCATGTTCTTTTGATCTGATGCAACACATAGTACAAATGAGCTGCAATTA-GTTGTTTGCACCGAAAATATG-TCAATTGATC--AAGTTTTTAAATG--TCCC-AAAACACGTTTTCACTGTCTATATTTTC--ATTAGGCAAGGCCTTGCCTTCCAACACA---TTAT-TCTAGATAGCCCAAGTCACGACCTTTCATTTGATATCTAATTATT-AAAAAGGCCACTT----------------------TTTTTCTTA-TTT-TGTCACCCCACCCATCAAATTTCAGTA-----ATAGCTGACGAAGTATT-C-TTCCTTTCTTCAAGGA-CTCCCCCCCCCCTCCCCCTCCCCAacca
gi|3 : ttgcattttacaactttTATTCTTCCT-TTCTTCAAGGACTCCCC-CCCCCCT--CCC-CCTCCCCACA-ACACACA-CACCTACTAGATTCACTGTCTTTATATTTTT-AAATCACA----TGTATG-----ATTAA---ATTTA---AAA-AGCATGCTATTACGGAATGGATTGGTGATTACAACA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATATACATGTCATCAATACCATAGCTTAAGAAGCATGCTCCTTTCCTTTTTATATTTC-TTTATGT---TATTTTTTATAATAGAAAAAT-GAcaacacacacacctactagattcactgtctttatatttttaaatcacatgtatgattaaatttaaaaagcatgctattacggaatggattggtgattacaacataatcttgctggctgctgtccttcagtttagactagggacactgggttcgactcctaggagattaatatacatgtcatcaataccatagcttaagaagcatgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
gi|4 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagTGGCTGCTGTCCTTCAGTATAGACTAGGGACACTTGGTTCGACTCCAAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGGAGCATGGTCCTTTCCT-----T------TCTA----------GTT--CAATGGAAAAAT-AAAA--TGTATTATGATGGCATTGACCCACCTCCAATTGGTATGTTTTAA---------GCACTATACCAATGATGTTATGAGTTCGAGTCCCGTCTCTGCACATTTTA----T---GTAGATTTAATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGATTCTATTT-TATCTTATTTTTATCACATTTACCATTGGATTTATTCTACTGCTGCAAATTTCAACGCGCTTAAACGTATACTTCAATGTAAA-AATGGATAGCATGCTGTTATTGCAAGGGTTATTGATGATAA--AAATAGTCCTGTCTGAAAGATGATATCATGT-TTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATAAACTTCATCCATACCATAGCCAAAGAAGTAAAACTTGTTCATATGTACAAAACAGACCCTGCCGCTATAACAAT----------------------TACCA----TTATAGAATTATAAACACTTTTTATAGTTATCATTTTCTTACGTCta
gi|5 : tTCTGGTACCCTGCC-AA-TTCATTCCATTACTCTCCATTACGAAGGTCA--------------GATATTGG-CTGGCGCCATCTTAATTTCTGTTTTTTGTAAACAAACGCAGAACGTGCGTTTAT----G--A--TG---CGACTT---G-GAAAA--AA-CTTTTT----TCAACAGATGGAATAAAAGT----GATACCCTTGTGGGCA--GTCAATGCACATGG--TCATGTTCTTTCGATATAATGCAACACATAGTTCAAAGTAACTGCAATTAAAAGCTTTGCACCGAAATTATGACCGATGGATC--AAGCTTTTAAA--GGTCCC-AAAACACGTTTTCGCGTTCTA-ATTCTTTCGTTAGTCGTGGCCTTCTCTTCGGACACATTTTTTT-TCCAGATAGCCCAAGTCACGCCCTTTC----GATACCCAGTTATT-AAAAAAGCCACTCGTATTTATAAAAATATAGCTGTTTTTTCTTATTTT-TATCACCCAACCCATCGAATTTCATAAATACCATAGCTGACGAAGTA-TGC-TTTCTTTCTTCAAGGACCTTTCCAATttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|6 : ATGTAACGAGTTCGAGTCCCAGCTCTGCACATTTTTTA--T---GTAAGTTTGTTACTCAATTATTAAGAACGCCACTAGTACTTTGAAATTTGATCTGTTT-T--CTTATTTAAATCTCATCAACCATTGGATTCATTCTACTACTGCAAATGTCAGTGCGCTTAAAAGTATACTTTAATATAAATAT-GGATAGCATGCTGTTAATGCAAGGGTAATTTATGATAA-----------------------GA-ACAATGTCTTAGATTAAGGCCAATATGCTCGATTCCTAGATG-TTGGTAAACTTCATCCATACCATAACAAAAGAATTAAAATCTGTACATATGTACAAACCAGACCCTGTTCCCATGAAGAT--------------AACCATTAT-CTGTTATTTATA----TA--------TTTGATAGTTATCATTTTCTCATGTCc
gi|7 : gaTACCAAGGTCA--------------GGAATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGTGCTTAT----G--A--TG---TGACTT---G-GAAAA--AC-TTTTTT----TTAACACATGGAATAAAAGTAAGTGTAACCCTTGTAGGGC--ATCAATGTACATGA--TCATGTTCTTTTGATCTGATACGTTACATAGTATAAATGAGCTGCAATTAAGTTGTCTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGATCCC-AAAACACGTTTTCAAAGTCTA-ATTTTTTCGTTAGGCGTGGCTTTCTCTTCTGACACA----TTT-TCAAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTGTT-AAAAAGGCCACTCGTATTAATGAAATTAGAGCTG-TTTTTCTTATTTT-TATCATCTCACCCATCGAATTtttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|8 : TTTCAATCTGATGCGTCACATAGTATAAATGAGCTGCAATTAAGTTGTTTGCACTGAAACAATGACCGATGGATC--AAGTTTTTAAATGGATCAC-AAAACACGTATTCGCCGTCTA-ATTTTTTCGTTAGGCGTAGCCTTCTTTTCTGACACA---TTCT-TCTAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTATTAAAAAAGGCCACTCGTATTTATGAAATTAGAACTG-TTTTTCTTA-TTTCTATCACCCCA-CCATCGAATTctaacgctgaaaatgcccacccacacacct
gi|9 : TATGACCGATGGATC--AAGATTTTAAAAGGGTCCTTAAAACACGTTTT-ACGGCCTC-ACCTTCTC--TAGGCGTGGCCTTCTCTTCTGAATAA---TTTT-TCTGGATAGCCAAAATCACGACCTTTCAGTTGATACCCTGTTATG-AAAAAATCCAC-AGTATTTATGAAACTAGAGCTG-TTTTTCTTA-TTT-TATCACCCAACCCATCGAATTTCATTAATAACATAGCTG---------T-C-TTCCTTTCTTTTAGGACCTCTCCCATTCTTTGCTTTTTTCATTTATActaacgctgaaaatgcccacccacacacat
blockSeqs : C C C C CA T AGTATTGGAGGCTA G CTTT T A TTATGCG CT AAA CTGG ATTAA ATTT GA TT TA TC T C T A T TTTT T G G A T T G A TTC TTCA AAGGAACTCCTTGATTTATAC C . TCAAGGACTCCCCCCCCCCTCCCCCTCCCCACA CACACC C C TTT ACCA T ATT A TCA TAA C A A TTTTATATT A TT GAA TTAT A G T T G . T GCTTAT G TATC C T C T C C AAT T T AAATAGTCCTGTCT T C G A A C A A AACCA A TGTTA G TAAACAC
blockSeqs : . . C T CC T . . CTTA . A GTG . AAA AT TTTAT . . TT TG . . A . T C T . A T . . T C T TGC TTCA . GCCACCCCTCTACCCCACCCCTCAT CAAC A A TT . A C G A . . T . TA . TT . TC A A . T T . G TTAT T TT A T G T C T TAT A A . . . C . A A G G . . CA . .
blockSeqs : . . . . . . CTTT . A ATG . . A AAAC . . . TG . . T . A C T . A T . . . . A TC TTTT CC A C . . A . T . . . A . TT . TG . . . . A AT T TC A . G T .
blockSeqs : . . . . G ATG . . A ATC . . . TG . . T . G G T . A G . . . . T . . T . . .
blockSeqs : . . . . A . . . G AAA . . . TG . . T . G T T . A G . . . .
blockSeqs : . . . . . G AAC . . . . . . T . G T . . G T . . . .
blockSeqs : . . . G AA . . . . . . C . . T . . . . . . . .
blockSeqCons : AAN*** TTCA TT*******
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT------G--A--TG---CGACTT---G-GAAAA--AN-TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-----TATTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATTGG-CTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTTT------G--A--TG---CGACTT---G-GAAAAAN---TTTTTT----TCAACACATGGAATAAAAGTAAGTGATACCCTTGTGGGGA--ATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCTTT-------TC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111
lowQualScore : 33333333333333 4444444 111 11111 222222 1111 11 1111 1 1 22222 1111 777777777777777777777 1 11111111111111111111111111111111111111 2222222 222 2222 222 222 111 1 1 3333333 111 1111 11 555555555 444444444 22222 1111 6666666666666666 2 2 0000000000000000000 11111 1111111
lowQualScore : 6 6 2 6 22 3 99999999999999 6 3 3 5 3 66 3333333 66 777 11111 444444 0000 66 33 33 66 5 1 5 5 3 2222 5 1 2 0 5 0 5 0 0 1 0 0 44444 0000 0 222222222222222222222 1 3 22222222222222222222222222222222222222 3333333 1 1 0 888 1111 1 000 1 333 777 0 0 1 0 0 7777777 6 8 11 444 0 7777 0 3 00 7 7 1 333333333 4 333333333 0 0 1 00000 1 3 1 3 2 3 7777 1 1 8888888888888888 6 6 1 6 7 1 0 1 1 5555555555555555555 7 44444 6 5555555
lowQualScore : . . . . .. . .............. . . . . . .. ....... .. ... ..... ...... .... .. .. .. .. . . . . . .... . . . . . . . . . . . . ..... .... . ..................... . . ...................................... ....... . . . ... .... . ... . ... ... . . . . . ....... . . .. ... . .... . . .. . . . ......... . ......... . . . ..... . . . . . . .... . . ................ . . . . . . . . . ................... . ..... . .......
lowQualScore : 7 7 5 5 88 5 22222222222222 7 2 3 7 9 99 8888888 99 555 88888 000000 6666 99 88 55 99 0 1 0 4 1 0000 0 1 5 2 0 4 0 0 0 4 8 8 88888 4444 6 000000000000000000000 0 3 77777777777777777777777777777777777777 2222222 0 0 2 555 2222 0 222 2 555 555 0 2 0 2 0 0000000 0 0 44 000 6 2222 2 5 88 3 3 0 333333333 2 222222222 2 2 0 88888 0 2 0 2 5 7 3333 0 0 7777777777777777 7 7 0 7 3 0 7 0 0 3333333333333333333 3 33333 7 0000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T------GA--TG---CGACTT---G-GAAAA--AN-TTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCTT------TTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNNNNNNNGTCTGGTACCCTGCCCAACTTCATTCCGTTACCCTCCATTACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T------GA--TG---CGACTT---G-GAAAA--AN-TTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGCACATGG--TCATGTTCTTTCGATCTGATGCAACACATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGGTCCC-AAAACACGTTTTCACGGCCTA-ATTTTCTCGTTAGGCGTGGCCTTCTCTTCCGACACA---TTTT-TCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCCAGTTATT-AAAAAGGCCACTCGTATTTATGAAATTAGAGCTG-TTTTTCTTA-TTT-TATCACCCCACCCATCGAATTTCATTAATACCATAGCTGACGAAGTA-T-C-TTCCTTTCTTCAAGGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGCCAGAATACANAGATGGTTGTTCTTTTT-TTCT-----G-----CC-CCCCCCT--CCC-CCCCCC---A-ACACACA-C---TACTAGNTTNACTTTCTTTATATTTTT-AAATCACA----TGTNTA--CAAAATAAT--ATTTA---AAA-AGCATGCTATTAAGGCATGGNTTGTTGATGACAAAA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGAAGCATGCTTCTTTCCT-------TTTC-TTTATTT---TATTTTT--CAATGGAAAAAT-AAAATCTTTTTTATGTTGACATTGACCCACCTCCCACAGGTATGNTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCGGCTCTGCACATTTTGT---T---GTAAGTTTGATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGGANCTGTTT-T-TCTTATTTATATCACNTCAACCATTGNATTCATTCTACCGCTGCAAATGTCAGCGCGCTTAAACGTATACTTTAATGTAAA-AA-GGATAGCATGCTGTTANTGCAAGGGTNATTGATGATAA--A---AGTCCTGTC-GAAAGATGA-ATCATGTCTTAGACTAAGGNCAGTAGGCTCGACTCCTAGGTG-TTGATAAACTTCATCCATACCATAGCNAAAGAAGTAAAACCTGTACATATGTACAAACCAGACCCTGTCGCCATNAANAT--------------AA-CGTTATACCGTTGTTTATAGAATTATAAACA-TTTTTATAGTTATCATTTTCTCACGTC
gi|1 : GTCTGCTACCCTGTCCAACTTCATTCCGTTACCCTTCAATACGAAGGTCA--------------GGTATT-GGCTGGCGCCATCTTTATTTTCGTTTTC-GTAAACAAACTCTCAAAGTACTTT--TCA----GA--TG---CAACAT---A-GACA------TTT----TTATCAATACATGGAGCAAAAGTATGTGATACCGTT--GTGGGGAATCAATGCACATGA--TCATATTCTTTCGATCTGATGTAACACATTGTACAAATTAACTGCAAT-AAGTTGTTTGCAATGAAATTATGACCGATGGGTC--AAGTTTTTAAATGGATCCG-AAAACACGTTTTCACGGCCTA-ATTTTCTTATTAAGCGTGGCCATCTCTTCTGACACA---TTTT-TCTGGATAGCCCAAGGCACGAGCTTTCGTTTGATACCAAGTTATT-AAAAAGGTCATTCATATTTATAAAATTAGAGCTG-TTTTG-TTA-TTT-TATCACCCCATCCATCGAATTTTATTTATACCATAACTGACGAAGTA-T-GGTTCCTTTC---AAGGACCTCTTCAATTCCTTGCTTTCTTCGTTTATAC---------------------TTATTTGCCAGAATACAAAGATGATTGTCCTTTTTGTTTT-----G-----C------------------------A-ACACA-A-C---TACTAGCTTAACATTATTTATATTT---AAATCACA----TGTTTA--CAAAATAAT--ATTTA---AAA-AGCATGTTATTAAGGCATGGTTTGTTGATGACAAAA-TAATCTTGCTGTCTGATGTCCTTCAGTTTAAACGATGGACACTGGGTTCGACTCCTAGGAGATTAATACACACGTCATCAAAACCATAGTTTTAGAAGCATGTTTCTTTCTTTA-----TTTC-TTTATTT---TATTTTT--CAATGGTAAAATGAAAATCTTTTTAATGTTGACATTGACCCACC-CCCACAGGTATGCTTTAGGTTATTTATGCACTATGTCTATGATGTTATGTGTTCCAGTCCCAGCTTTGCATAGTTTGT---TAAAATAAGTTTGATACCCAGTTATTAAGATGGCCAATCATACTGTGAAATTGGAGCTGTTTGT-TTTTATTTATATCACCTCAACCATTACATTCA-TCTACCGCTACAAATGTCAGGGAGCTTAAACATATACTTTAATGTAAA-AA-GGATAGCATGCTGTTACTGAAAGGGTGGTTGATGATAAATA---AGTTCTGTCGGAAAGATGAGATCATGTCTTAGGCTAAGGACAGTAGGCTCGACTCCATGGTGTTTGAT-AACTTCATCCATACCATAGCTAAAGAGGTAAAACCTGTACATATGTACAAACAAGACCCTGTTGTCATCAATATTTTCTGCTCTGTTAAA-TGTTATACGATTGTTTACAGAATTATAAACA-TTTTTATAGTCATTATTTT
gi|10 : tgctattttcctgccaaactgataCCGTTACCCTCAATTACGAAGGTCAAGTATTGGAGGCTAGGTATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAAC------------TC--T-------A--TG---CAACAT---A-AAAAATTAA-TTG----TTTTCAATACATGGAGCAAAAATAAGTGACACCGTT--ATGGGGAATCAATGCACATGA--TCATATTCTTTCGATCTGATGCAACACATAGTACAAATGAACTGCAATTAAGTTGTTTGCACTGAAATTATGACCGATGGGTC--AAGTTTTTAAATGtatgtc
gi|11 : -ACACAC--C---TGCTAGCTTCACTTTCCTTATATTA---AAATCACAACCATGCTTA--CAAAACAATCAATTTATAAAAACAACATGCTATTTAGGTATGGATTGTTGATGAAAAAAATAATCTTTCTAGGTGCTGTCCTTCAGTCTAGACTAGGGACATTGAGTTCGACTCCTAGGAGATTAATAC----GTCA---ATACCATAGCTTTAGAAGC
gi|12 : AATGGGTCCA-ATAACACGTTTTCACGGCCTA-ATTTTCTTATTAGGCGTGGCCATCTCTTCTGACACA---TTTTTTCTGGATAGCCCAAGGCACGACCTTTCGTTTGATACCTAGTTATT-AAAAAGGCCACTCGTTTTTATGAAATTAGAGCTG--TTTTCTTA-TTG-TAct
gi|13 : TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T-------A--TGAAATGACTT---A-GAAAA--AACTTT----TTTTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA---CCATCCGACCTGAT
gi|14 : cagatatcggctTCA--------------GATATC-GGCT-------------TTTCCGTTTTT-GTAAACAAACACAGAACGTGCGTT--T-------A--TGAAATGACTT---ATGAAAA--A-----------TTCAACACATGGAATAAAAGTAAGTGATACCCTT--GTGGGGAATCAATGTACACGGTTTCA---CCATCCGACCTGATc
gi|15 : GAGATTAATACATGTGTCATCGACACCATAGCTTTAGAAGCATGCTTCTTTTTT-------TATCATTTATTTGAATATTTc
gi|16 : TGAAGGTAGAGCTGTTT-T-T-TTAAATATATCACCACAATCA-CACATTTATT-TATCGCTactttacttttccaaaccca
gi|2 : AAAACGTACGTT--TTTATGCGACTTG---CGACTT---G-GAAATTTAT-TTT----TTTTCAACACATGGAATGAAGGTAAGTGATACCCTT--GTGAGGAATCGATGCGCATGG--TCATGTTCTTTCGATCTGATGCAACATATAGTACAAATGAGCTGCAATTAAGTTGTTTGCACCAAAATTATGACCGATGGATCTCAAGTTTTTAAATGGGTCCC-AAAACACGTTTTCATGGACCA-ATTTTCTCTTTAAGCATGACGTTCACTTCCGACATA-------------------------ACGATCTTTCGTTTGATATCCAGTTATT-AAAAAGGTCACACGTATTTATGACATTAGAGCTA-TTTTTCTTA-TTTGTATCACCCCACCCATCGAATTTCATAAATACCATAACTGACGAAGTA-----------------ATGACCTCTCCAATTCCTTGCTCTCTTCATTTATACAAGGAACTCCTTGATTTATACTTGTTTGTCAAAATACACAAATGGTTGTTCTTTTT-TTCT-----G-----CCACCCCTCTACCCCACCCCTC---ATACACACAAC---TACTAAATTAACTTTTTTTATATTTTTTAAATCAAA----TGTATAATTAAAGTTAA--ATTTA---AAA-AGCATGCTGTAAAGGCAAGGTATGTTAATAACAAAA-TAATCTTGCTGACTGCTGTTCTTCAGTTTAGACTAGGGACATTGCGTTCAACTCCTTGGAGATTAATACACATATCATCGGTACCATAGCTTGATAAGGATGCTTCTTTCCC-------TTTC-TTTATTT---TATTGT-------------------ATCTTTTTTATGTTGACAATGACCCATCTCCCACAGGTATGGTTTAA---------GCACTATACCTATGATGTTATGAGTTCGAGTCCCTGCTCTGCACATTTTGCTTAT---GTAAGTTTGATACCCAATCATTAAGACGGCCAagacgagtgtaggacctcacctaaaacat
gi|3 : attttgtgtttgttctattaagttaGTCTGGTACCCTGCCCAACTTCATTC-GTTAC-------------GGTAA--------------AGTATTGGGCTGGTGCCA---------------TT-GTAAACAAACACAGAACGTGCGTTTGT------GA--TG---TGACTTCTGG-GAAAA--TC-TTTTTTATTTTCCATACATGGAACAAAAGTAAGTGATACCCTTTCGGGGAGAATCGATGCACATAG--GCATGTTCTTTTGATCTGATGCAACACATAGTACAAATGAGCTGCAATT-AGTTGTTTGCACCGAAAATATG-TCAATTGATC--AAGTTTTTAAAT--GTCCC-AAAACACGTTTTCACTGTCTATATTT--TCATTAGGCAAGGCCTTGCCTTCCAACACA---TTAT-TCTAGATAGCCCAAGTCACGACCTTTCATTTGATATCTAATTATT-AAAAAGGCCACTT----------------------TTTTTCTTA-TTT-TGTCACCCCACCCATCAAATTTCAGTA-----ATAGCTGACGAAGTATT-C-TTCCTTTCTTCAAGGA-CTCCCCCCCCCCTCCCCCTCCCCAacca
gi|3 : ttgcattttacaactttTATTCTTCCT-TTCTTCAAGGACTCCCC-CCCCCCT--CCC-CCTCCCCACA-ACACACA-CACCTACTAGATTCACTGTCTTTATATTTTT-AAATCACA----TGTATG-----ATTAA---ATTTA---AAA-AGCATGCTATTACGGAATGGATTGGTGATTACAACA-TAATCTTGCTGGCTGCTGTCCTTCAGTTTAGACTAGGGACACTGGGTTCGACTCCTAGGAGATTAATATACATGTCATCAATACCATAGCTTAAGAAGCATGCTCCTTTCCTTTTTATATTTC-TTTATGT---TATTTTTTATAATAGAAAAAT-GAcaacacacacacctactagattcactgtctttatatttttaaatcacatgtatgattaaatttaaaaagcatgctattacggaatggattggtgattacaacataatcttgctggctgctgtccttcagtttagactagggacactgggttcgactcctaggagattaatatacatgtcatcaataccatagcttaagaagcatgctcctttcctttttatatttctttatgttattttttataatagaaaaatgata
gi|4 : ttgcattttacaactttgtctggtaccctgcccaacttcattcgttacggtaaagtattgggctggtgccattgtaaacaaacacagaacgtgcgtttgtgatgtgacttctgggaaaatcttttttattttccatacatggaacaaaagtaagtgataccctttcggggagaatcgatgcacataggcatgttcttttgatctgatgcaacacatagtacaaatgagctgcaattagttgtttgcaccgaaaatatgtcaattgatcaagtttttaaatgtcccaaaacacgttttcactgtctatattttcattaggcaaggccttgccttccaacacattattctagatagcccaagtcacgacctttcatttgatatctaattattaaaaaggccactttttttcttattttgtcaccccacccatcaaatttcagtaatagctgacgaagTGGCTGCTGTCCTTCAGTATAGACTAGGGACACTTGGTTCGACTCCAAGGAGATTAATACACATGTCATCGATACCATAGCTTTAGGAGCATGGTCCTTTCCT-------T----TCTA----------GTT--CAATGGAAAAAT-AAAA--TGTATTATGATGGCATTGACCCACCTCCAATTGGTATGTTTTAA---------GCACTATACCAATGATGTTATGAGTTCGAGTCCCGTCTCTGCACATTTTA----T---GTAGATTTAATACCCAATTATTAAGACGGCCACTCGTACTGTGAAATTGATTCTATTT-TATCTTATTTTTATCACATTTACCATTGGATTTATTCTACTGCTGCAAATTTCAACGCGCTTAAACGTATACTTCAATGTAAA-AATGGATAGCATGCTGTTATTGCAAGGGTTATTGATGATAA--AAATAGTCCTGTCTGAAAGATGATATCATGT-TTCGACTAAGGGCTGTAGACCCGACTCCTAGGGGATTGATAAACTTCATCCATACCATAGCCAAAGAAGTAAAACTTGTTCATATGTACAAAACAGACCCTGCCGCTATAACAAT----------------------TACCA----TTATAGAATTATAAACACTTTTTATAGTTATCATTTTCTTACGTCta
gi|5 : tTCTGGTACCCTGCC-AA-TTCATTCCATTACTCTCCATTACGAAGGTCA--------------GATATT-GGCTGGCGCCATCTTAATTTCTGTTTTTTGTAAACAAACGCAGAACGTGCGTT--TAT----GA--TG---CGACTT---G-GAAAA--AA-CTT----TTTTCAACAGATGGAATAAAAGT----GATACCCTT--GTGGGCAGTCAATGCACATGG--TCATGTTCTTTCGATATAATGCAACACATAGTTCAAAGTAACTGCAATTAAAAGCTTTGCACCGAAATTATGACCGATGGATC--AAGCTTTTAAA--GGTCCC-AAAACACGTTTTCGCGTTCTA-ATTCTTTCGTTAGTCGTGGCCTTCTCTTCGGACACATTTTTTT-TCCAGATAGCCCAAGTCACGCCCTTTC----GATACCCAGTTATT-AAAAAAGCCACTCGTATTTATAAAAATATAGCTGTTTTTTCTTATTTT-TATCACCCAACCCATCGAATTTCATAAATACCATAGCTGACGAAGTA-TGC-TTTCTTTCTTCAAGGACCTTTCCAATttgagcaaggaatgatagaaagaatgccaagtttttatttggcagtaaccagccgtacattttggtaaaacgagggag
gi|6 : ATGTAACGAGTTCGAGTCCCAGCTCTGCACATTTTTTA--T---GTAAGTTTGTTACTCAATTATTAAGAACGCCACTAGTACTTTGAAATTTGATCTGTTT-T--CTTATTTAAATCTCATCAACCATTGGATTCATTCTACTACTGCAAATGTCAGTGCGCTTAAAAGTATACTTTAATATAAATAT-GGATAGCATGCTGTTAATGCAAGGGTAATTTATGATAA-----------------------GA-ACAATGTCTTAGATTAAGGCCAATATGCTCGATTCCTAGATG-TTGGTAAACTTCATCCATACCATAACAAAAGAATTAAAATCTGTACATATGTACAAACCAGACCCTGTTCCCATGAAGAT--------------AACCATTAT-CTGTTATTTATA----TA--------TTTGATAGTTATCATTTTCTCATGTCc
gi|7 : gaTACCAAGGTCA--------------GGAATT-GGCTGGCGCCATCTTTATTTCCGTTTTT-GTAAACAAACACAGAACGTGTGCT--TAT----GA--TG---TGACTT---G-GAAAA--AC-TTT----TTTTTAACACATGGAATAAAAGTAAGTGTAACCCTT--GTAGGGCATCAATGTACATGA--TCATGTTCTTTTGATCTGATACGTTACATAGTATAAATGAGCTGCAATTAAGTTGTCTGCACCGAAATTATGACCGATGGATC--AAGTTTTTAAATGGATCCC-AAAACACGTTTTCAAAGTCTA-ATTTTTTCGTTAGGCGTGGCTTTCTCTTCTGACACA----TTT-TCAAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTGTT-AAAAAGGCCACTCGTATTAATGAAATTAGAGCTG-TTTTTCTTATTTT-TATCATCTCACCCATCGAATTtttagtaaggaatgaaggaaaaattgccaattttttactttgcaataaccagcagttcattggtaaaacaatcgaga
gi|8 : TTTCAATCTGATGCGTCACATAGTATAAATGAGCTGCAATTAAGTTGTTTGCACTGAAACAATGACCGATGGATC--AAGTTTTTAAATGGATCAC-AAAACACGTATTCGCCGTCTA-ATTTTTTCGTTAGGCGTAGCCTTCTTTTCTGACACA---TTCT-TCTAGATAGACCAAGGCACGACCTTTCGTTTGATACCCAATTATTAAAAAAGGCCACTCGTATTTATGAAATTAGAACTG-TTTTTCTTA-TTTCTATCACCCCA-CCATCGAATTctaacgctgaaaatgcccacccacacacct
gi|9 : TATGACCGATGGATC--AAGATTTTAAAAGGGTCCTTAAAACACGTTTT-ACGGCCTC-ACCTTCTC--TAGGCGTGGCCTTCTCTTCTGAATAA---TTTT-TCTGGATAGCCAAAATCACGACCTTTCAGTTGATACCCTGTTATG-AAAAAATCCAC-AGTATTTATGAAACTAGAGCTG-TTTTTCTTA-TTT-TATCACCCAACCCATCGAATTTCATTAATAACATAGCTG---------T-C-TTCCTTTCTTTTAGGACCTCTCCCATTCTTTGCTTTTTTCATTTATActaacgctgaaaatgcccacccacacacat