lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 1 1 33333 1 4444444444444 1111 444444 333333333333333 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 11111111111 11 77777777777777777777777777777777777777 333333333333333 2222222222222 1
lowQualScore : 0 5 6 5 55555 66 555 3 0 1111111111111 1111 6 333333 777777777777777 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 1 33333333333 55 3 4 55 44 4 22222222222222222222222222222222222222 55 55 888888888888888 2222222222222 0 2 66 4
lowQualScore : . . . . ..... .. ... . . ............. .... . ...... ............... . ................................................................................................................................................................ . . ........... .. . . .. .. . ...................................... .. .. ............... ............. . . .. .
lowQualScore : 0 0 0 0 00000 55 000 3 7 3333333333333 0000 0 888888 333333333333333 2 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 2 11111111111 55 7 0 55 77 4 44444444444444444444444444444444444444 00 00 777777777777777 0000000000000 9 3 11 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNCACACAGTCTTGACACTTNGCTTNNGNCNTAT-TACCGT----AATTGA--GAAGTTTTAGC-GGTGCTGCCATG-GTCAACTC-ATTAA-TGTCGGGAACGAGAGCAAATTCAAT-A----A-ATT----T-ATCG----AG-T--ACCG----TATC--T---GACCAATCAAATTCCGNTTTA-CAT-NCGAG-NTGGACAG----TCG--TTTCN--AA---AT--GGC------------A---------AA------A--------A---TT-TCAAAATATTGA--T--G--C--G--TTATA-TA--TACAGAT-ACG---------G-GAGATTTAT-TTTTTTCCCC-TGAGATTT--AGGTCTT--AAAAC-GT------GG---TGCGCACTA-------------TACACGAGTGC--GCACTAT-CCGTGAGTAGAAAT
Reference ( gi|4 ) : ATATTTTTGCATTATATCAATACCAC-CATTCCTCACAGTTAGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTACCTTGTGCCAACTCGATTAAATATTGGAAACAAGAACAAATTCAAT-A----A-ATT----T-AGCA----AG-T--ACC-----TATT--T---GACCAATCATATTCCGATTTA-CAT-TCCAA-CT---CAG----TCC--TTTTT--AA---AT--GGC------------A---------AA------A--------A---TT-TAAAAATATTGA--T--G--T--G--TTATA-TA--TACAGAT-ACA---------AAGAGATTTATATTTTTTCCCC-TGAACTTT--AGGTCTT--AAAAC-CT------GG---TGCACACTA-------------TACATGAGTTC--ACACTAT-CTATGAGTAGAAAT
gi|3 : CACACAGTCTTGACACTTC-CTTCTGGTTTACATAAAGTCCTAAATTAATTAAAGTTGT----GGTGATGCC------CAACTCCATTAATTGTCATGAACAAGAACAAATTCAATCATTTTA-ATTGGGTT-ACCATACCAG-TCTACTGGTAGTATT--TTCTGACCAATCAAATTTC-ATTTAACAT-GTCAAGCTAGACAG----TTG--TTTCA--AA---AT--GACTTTTATGCTAGGATTTTC----AA------A--------T---TT-TCAAAATATTCA--T--GCAT--A--TTATA-TG--GA---AT-ACA---------G-GAGATTT-----TTTTTACA-TGAGGTGT--AAGTCTT-----------------------CACACTA-------------CACACAAGTGC--AGATTAT-ACATGTGTA
gi|6 : tactttttattattgttgactttACA-TTGGCTTAAGTCATAT-AACCAT----AA-------AAGTCTTAGCAGGTGCTGCGATGAGTTAACT------------GGGAAGAAGAGCAAATTCAAT-A----G-TTT----TAAGTG----AG-T----C-----TA-C--T---GACAAATaga
gi|5 : ataaaataacagcctcttatcaataatataaagtgttctgtcctagttaaaattggcttaaaatagcaaaacaggtataaacaaacaagtgtacaagtgtcacctgtcatttcagggtataaT-TGCCAT----AATTGA--GAAGTTTGAGCCATTGCTGTCATATGtt
gi|18 : CAACTTGATTAAATATCAGGAACGAG-ACAGGTTCAAT-A----ATATT----C-GTCA----AG-T--gtttcagttattttaatatcatttatgtccatcaagatacgctactggcaataatttctgaccaatcaaatcccgttttacatatgaagtcagacaatcattacaaaatggctgtcatggcaagattttcaaaatatcgaaatgttgatacgctgacatttaggtcttaaaacatggttgaggacgatacataagtgcagataatatattataaatagaaacggttg
gi|10 : gctAAGAGCAAAGTAAAC-A----A-ATT----TCATCA----AACT--ACTG----TACTGGT---GGC-AATTAT-TTCTGA---A-CAA-TCAAA-TT---C-----------TGTTT--AACATATTGAGT------------C---------AA------A--------A---TT-TAAAAATATTGA--T--G--TGAG--TTATA-TA--CAT-GATAACATTATAATATAGGAGATGTATATTATTT--CC-TGAAAATG--ATGTCTT--AAAACGGG------GG---TACACACtacaataccagtc
gi|9 : TC--T---GACCAATCAAATTCTATTTTA-CTT-ATCAG-GT---CAA----ACAGATTTTTCAAA---AT--GGC------------A---------AGCACTGCA--------AGATTT-TCAAAATACTGA--T--G--C--GCATTATA-TA--TG--GAT-TCA---------G-GAGATTCAT-----TTTCAC-TGAGATTT--AGGTCTT--AAAAC-AT------GG---
gi|5 : cagtaatttttatcaagttgatgtaccagtctattggcaatcattTC--T---GACCAATCAAATCCCGTTTTA-CAT-ATGAA-GT---CAGACAATCA--TTACA--AA---AT--GGCTGTCATGGC---A---------AG------A--------T---TT-TCAAAATATCGA--A--A--T--G--TT------------GAT-ACG------------------------------C-TGACATTT--AGGTCTT--AAAAC-AT------GGT--TGAGGACGA-------------TACATAAGTGCAGATAATATATTATAAATAGAAA
gi|2 : ttgccataattgagaagtttgagccattgctgtcatatggtttcagttattttaatatcatttatgtccatcaagatacgctactggcaataattTC--T---GACCAATCAAATTCCGATTTT-TAT-T-GAG-TTGGACAG----T----TGTTT--GGC--AC--AGC------------G---------AG------A--------T---TT-TTAAAATATTGATCT--A--T--G--TTATA-TA--CA-AGAcggttg
gi|16 : tttatggaaggttgattatagaggacgatttacctagccgcttcagtccacattcatttcaaatattttaaagcaatcaacataccacctctcctactaataataaattgtggcctaaactggctaaagattaggcaggtatgtatttaaaaacaagtttgtgaccaagtgtcactggtcatttctgggtattcaacaatggcttctcttactcctcttaattcagcaagtgctggcacatggcttttacaataattttttatcgagttaccatatcaataatt---GACCAATCAAATTTCATTTCA-CATATCGAG-TTGAGCAG----TTG--TTTTA--AA---AT--GGC------------ATGCACATCTAA------ATGTTAAGCA---TT-TCAAAATATTGA--T--G--
gi|8 : ttccATCA-ATT--AATTTA-CAT-ACCAAGCCAGACAG----TTG--TTTCA--AA---AT--GGTGTCGCAA-----A---------AA------A--------A---TA-TCAAAATATTGA--TGCG--C--G--TTATA-TATGTACAGAT-ACA---------ATG-GATTTCT-TTTTTTCCCG-TTAGATTT--CAGTCTA--AAAAT-GTG-----GG---TGCACACTGCACAGTGACACTTTACATGAGTGC--GCACTAT-CTGTGAGTAAAA
gi|11 : tccaag---AC--GGC------------G---------AA------A--------A---TT-TTAACATATTAA--A--A--C--G--C-ATAATA--TACATAT-ATG---------AA-AGATTTATGTTTTTTC----TGAGATTT--AAGTCTT--AAGGT-CTAAAGTAGG---TGCGCACTA-------------TACATAAGAGC--AAACTGT-CCGTGAGTAAAAAta
gi|12 : aaatccgttttacataatgagtcggacaacctttcaaaaatggggttC------------A---------AA------A--------C---TT-TAAAA-TATTAG--T--A--A--G--CTTTA-TA--TAAAGAT-AC----------AGGGGATT----------------------T--AGGTCCT--CAACC-AT------GGA--TACACACTA-------------TAAAGGAATGC--ACATTAT-
gi|14 : tagacagtcaattcaaaatgaatgtcacggtgtaatttt---------AA------G--------A---TTGTTAAAATATTGA--T--A--T--G--TGTTA-TA--TACAGAT-ACA---------G-GAGATTTAT-TTTTCTCCCTGTGA--TTT--AGGTCTT--AAAAA-AA------GGAAATGCAC--TA-------------TACATGAGTGT--GCATTAT-CTGTCAGTAGAAATa
gi|15 : T-TCAAAATATTGA--T--G--C--G--CCTTA-GA--TACAGAT-ACT---------G-GAAATTAAG---TTTTCCTC-TGAGATAT--AGGTCTT--GAAACATT------GA---TGAGCAGTT-------------TACACGAGTTC--GCATTAT-TTATGAGTAAAAA
gi|1 : ATATTTTTTCC----GAAATGTCAAGATCTTCAAAAA----------GGC--TGCACATTA-------------TACACAAGTcg
gi|17 : cgttttactcatatgtagcacgcTATTTTT---CC-TGATATTT--AGGTCTT--AAAAC-AT------GGA--CGCACACTG-------------TACACAAGTGT--GCACTAC-CCATGAGTAAAAAaaagaagatttcaatttttttctcaaggtaaatagtccattaagatttggatatctgtgttttggagacctgtatgttcagatgttaatttcagtacaatttctctattggcagttgattatagatgatgttttacctgctggagaacctttttttaaaattcagtccataatcattaaataagcaataaaaaaaaaaattctctaaaaatatttaaataaattgtggccggtcataatcaagctggctcaaaatctaaattaggtatgtatggtatttaaagactaacatatgtgcaagtgtcacctttcatatctgggtattgaaaaattgacttctgtca
gi|20 : aattagcaatgcttgat------GG---TGTGCGCTA-------------TACACAAGTGC--ACACTAA-CTGTGAGAAGAAATca
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TAAAAATAGCTCAAAATTGAAATAAGGTAAGTATACCTTTTTAAAAAAGCACGTGTTCAAATGTCACCTGTCATTTTGGGATAATAAAATTATCTTCTGTCGTCCCTGACCGTAAGTGAGCAGGCAATAATGTTCGAGTAACTGTACCAGTCTACTAGCAATAATAGTTTACCAATCAAATATTGTTTTACATATTGAGTCGGACAGA
Unaligned ( gi|13 ): CTGTTTCTACTCGTATAAAATGTGCATAATTTTTCCGACTTTAAGATTTTCAAGAAGGGATGCGCATTATAATTATGTAAGTACAGAACTCAAATTTTGCATATCAAGTCTGACAGTCATAATTAAAAT
Unaligned ( gi|19 ): TAAATTGGTTCAAAATCTGAATAAGGTATGTACGGTATTTGAAAACAAACAGATATGTGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 111 2 1 5555555555555555555555555555555 11 11 1111111111111111111111111111111111111111111111111 3333333 888888888888888888888888888888888888888888888888888888888888888888888 111111 111111111111111 11111111 11111 1 2222222222222
lowQualScore : 5 2 2 5 77 22 222 0 1111 3 0 444 66 0 0 7777777777777777777777777777777 4 7 0 00 99 0 1111111111111111111111111111111111111111111111111 2 2 2222222 1 55 8 2 222222222222222222222222222222222222222222222222222222222222222222222 3 44 777777 555555555555555 3 8888 5555555 55555555 99999 44444 3 2222222222222 0
lowQualScore : . . . . .. .. ... . .... . . ... .. . . ............................... . . . .. .. . ................................................. . . ....... . .. . . ..................................................................... . .. ...... ............... . .... ....... ........ ..... ..... . ............. .
lowQualScore : 5 5 5 0 77 00 777 0 2222 2 2 000 22 0 0 2222222222222222222222222222222 6 8 7 00 33 7 3333333333333333333333333333333333333333333333333 4 4 1111111 0 55 2 3 777777777777777777777777777777777777777777777777777777777777777777777 1 22 333333 666666666666666 3 5555 6666666 99999999 11111 99999 3 0000000000000 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGT-GCTGCCAT--G-GT--CAACT-CGATT--AAATATCGGGAACAAGAGCAAATTCAATAA-NTTT--ATCGAG------T-ACCG----TA--------------------TC---------TGACCAATCAAATTCCGTTTTACAT-A-C-G-AGTC-GGACAGTCGTTTCAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
Reference ( family-1868 ) : NNNNNNNNNNNNNNNNNNNNNNNCACACAGTCTTGACACTTNGCTTNNGNCNTAT-TACCGT----AATTGA--GAAGTTTTAGC-GGT-GCTGCCAT--G-GT--CAACT-C-ATT--AA-TGTCGGGAACGAGAGCAAATTCAATAA-ATTT--ATCGAG------T-ACCG----TA--------------------TC---------TGACCAATCAAATTCCGNTTTACAT-N-C-G-AGNT-GGACAGTCGTTTCNAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACGG-GAGATTT--AT-TTT-TTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
gi|1 : TTCCGAA---------A---------TGT----C-------A-------------AG------A--------T---CT-TCAAAAAG--GC--TGCA--C-ATTATAC--A------CA----A-GTAAAG-AAGATTTCAAT-TTT-TTTCTC
gi|10 : cgttttactcatatgtagcacgcatattttAGAGCAAAGTAAACAA-ATTTC-ATCAAAC-----T-ACTG----TACTGGTGGCAATTATT-----TC---------TGAACAATCAAATTCTGTTTAACAT-A-------TT-G---AGTC--------------------------------------------------------AA------A--------A---TT-TAAAAATATTGA--TGTGAGT-TATATAC--ATGATAACATTATA-ATATAG-GAGATGT--AT-ATTATTTCC--TGAAAATGATGTCTTAA-----AACGG-G-GG-TACACACaaggtaaatagtccattaagatttggatatctgtgttttggagacctgtatgttcagatgttaatttcagtacaatttctctattggcagttgattatagatgatgttttacctgctggagaacctttttttaaaattcagtccataatcattaaataagcaataaaaaaaaaaattctctaaaaatatttaaataaattgtggccggtcataatcaagctggctcaaaatctaaattaggtatgtatggtatttaaagactaacatatgtgcaagtgtcacctttcatatctgggtattgaaaaattgacttctgtca
gi|11 : aAAAT-CCGTTTTACAT-AAT-G-AGTC-GGACAACC-TTTCAAA---------AATGGGGTTACGG----C-------G-------------AA------A--------A---TT-TTAACATATTAA--AACG--CATA-ATAT--A------CA----T-ATATGA-AAGATTT--AT-GTT-TTTTC--TGAGATTTAAGTCTTAAGGTCTAAA-G-TAGG-TGCGCACTA-------------TACATAAGAGCAAACTGTCCGTGAGTAAAAA
gi|12 : T-AGACAGTCAATTCAAA---------A---------TGAATGTC-------ACGGTGTAATTTTCAA------A--------A---CT-TTAAAATATTAG--TAAG--C-TTTATAT--A------AA----G-ATACAG-------------------------GGGATTTAGGTCCTCA-----ACC-A-T-GGATACACACTA-------------TAAAGGAATGCACATTAT
gi|14 : -------------AA------G--------A---TTGTTAAAATATTGA--TATG--T-GTTATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TCT-CCCTGTGATTTAGGTCTTAA-----AAA-A-A-GGAAATGCACTA-------------TACATGAGTGTGCATTATCTGTCAGTAGAAATa
gi|15 : T-TCAAAATATTGA--TGCG--C-CTTAGAT--A------CA----G-ATACTG-GAAATTA--A---GT-TTTCCTCTGAGATATAGGTCTTGA-----AAC-ATT-GA-TGAGCAGTT-------------TACACGAGTTCGCATTATTTATGAGTAAAAA
gi|16 : --------------------TC---------CGACCAATCAAATTTCATTTCACAT-ATC-G-AGTT-GAGCAGTTGTTTTAAA---------A---------TGG----C-------ATGCACATCT----AA------ATGTTAAGCA---TT-TCAAAATATTGA--TGcg
gi|17 : tTT--AT-TTT-T----CCTGATATTTAGGTCTTAA-----AAC-A-T-GGACGCACACTG-------------TACACAAGTGTGCACTACCCATGAGTAAAAA
gi|18 : aattagcaatgcttgaT--CAACT-TGATT--AAATATCAGGAACGAGA-CAGGTTCAATAATATTC--GTCAAG------T-ca
gi|2 : gcCAATAA-TTTTTTATCGAG------TTACCA----TA--------------------TCAATAATTTCTGACCAATCAAATTCCGATTTTTAT-T---G-AGTT-GGACAGTTGTTT-GGC---------A---------CAG----C-------G-------------AG------A--------T---TT-TTAAAATATTGATCTATG--T-TATATAC--A-------A----G-Atacaataccagtc
gi|20 : tttatggaaggttgattatagaggacgatttacctagccgcttcagtccacattcatttcaaatattttaaagcaatcaacataccacctctcctactaataataaattgtggcctaaactggctaaagattaggcaggtatgtatttaaaaacaagtttgtgaccaagtgtcactggtcatttctgggtattcaacaatggcttctcttactcctcttaattcagcaagtgctggcacatggctttta-GG-TGTGCGCTA-------------TACACAAGTGCACACTAACTGTGAGAAGAAAT
gi|3 : tgtgCACACAGTCTTGACACTTC-CTTCTGGTTTACATAAAGTCCTAAATTAATTAAAGTT---GT-GGT-GATGCC----------CAACTCC-ATT--AATTGTCATGAACAAGAACAAATTCAATCA-TTTTA-ATTGGGT-----T-ACCA----TACCAGTCTACTGGTAGTATTTTC---------TGACCAATCAAATTTCATTTAACATGT-C-A-AGCT-AGACAGTTGTTTCAAA---------A---------TGA----CTTTT---ATGCTAGGATTTTCAA------A--------T---TT-TCAAAATATTCA--TGCA----TAT-TAT--A------TG----GAATACAG-GAG------AT-TTT-TTTTACATGAGGTGTAAGTCTT--------------------CACACTA-------------CACACAAGTGCAGATTATACATGTGTAg
gi|4 : tactttttattattgttgactttCAC-CATTCCTCACAGTTAGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGT-GCTACCTT--GTGC--CAACT-CGATT--AAATATTGGAAACAAGAACAAATTCAATAA-ATTT--AGCAAG------T-ACC-----TA--------------------TT---------TGACCAATCATATTCCGATTTACAT-T-C-C-AACT----CAGTCCTTTTTAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TAAAAATATTGA--TGTG--T-TATATAT--A------CA----G-ATACAAAGAGATTT--ATATTT-TTTCCCCTGAACTTTAGGTCTTAA-----AAC-C-T-GG-TGCACACTA-------------TACATGAGTTCACACTATCTATGAGTAGAAATaga
gi|5 : atatttttgcattatatcaatacT-TGCCAT----AATTGA--GAAGTTTGAGC-CATTGCTGTCATATG-GTTTCAGTT---ATTTTAA-TATC--------------ATT---TAT-GTCC--ATCAAGATACGCT-ACTGGCAATAATT-----------------TC---------TGACCAATCAAATCCCGTTTTACAT-A-T-GAAGTC-AGACAATCATTACAAAATGGCTGTCA---------TGG----C-------A-------------AG------A--------T---TT-TCAAAATATCGA--AATG--T-T---------------------G-ATACG------------------------CTGACATTTAGGTCTTAA-----AAC-A-T-GGTTGAGGACGA-------------TACATAAGTGC
gi|6 : ACA-TTGGCTTAAGTCATAT-AACCAT----AA-------AAGTCTTAGCAGGT-GCTGCGAT--GAGT--TAACT---------------GGGAAGAAGAGCAAATTCAATAG-TTTT--Aagataatatattataaatagaaacggttg
gi|7 : ataaaataacagcctcttatcaataatataaagtgttctgtcctagttaaaattggcttaaaatagcaaaacaggtataaacaaacaagtgtacaagtgtcacctgtcatttcagggtataaACCAATCAAATATTGTTTTACATAT-T-G-AGTC-GGACAGagtgagtctactgacaaattt
gi|8 : taaaaatagctcaaaattgaaataaggtaagtatacctttttaaaaaagcacgtgttcaaatgtcacctgtcattttgggataataaaattatcttctgtcgtccctgaccgtaagtgagcaggcaataatgttcgagtaactgtaccagtctactagcaataatagtttGATCAATTAA-------TTTACAT-A-CCA-AGCC-AGACAGTTGTTTCAAA---------A---------TGG----TGTCGCAAA-------------AA------A--------A---TA-TCAAAATATTGA--TGCGCGT-TATATATGTA------CA----G-ATACAA-TGGATTT--CT-TTT-TTTCCCGTTAGATTTCAGTCTAAA-----AAT-G-TGGG-TGCACACTGCACAGTGACACTTTACATGAGTGCGCACTATCTGTGAGTAAAAa
gi|9 : tccaa--------------------TC---------TGACCAATCAAATTCTATTTTACTT-A-T-C-AGGTCAAACAGATTTTTCAAA---------A---------TGG----C-------A-------------AGCACTGCA--------AGATTT-TCAAAATACTGA--TGCGCAT-TATATAT----------G----G-ATTCAG-GAGATTC--AT-TTT-----CACTGAGATTTAGGTCTTAA-----AAC-A-T-GG-ta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTTTCTACTCGTATAAAATGTGCATAATTTTTCCGACTTTAAGATTTTCAAGAAGGGATGCGCATTATAATTATGTAAGTACAGAACTCAAATTTTGCATATCAAGTCTGACAGTCATAATTAAAAT
Unaligned ( gi|19 ): TAAATTGGTTCAAAATCTGAATAAGGTATGTACGGTATTTGAAAACAAACAGATATGTGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 111 333333 1111 11 1111111111111111111111111111111111111111111111111 22222 888888888888888888888888888888888888888888888888888888888888888888888 111111 111111111111111 11111111 11111 1 2222222222222
lowQualScore : 5 1 1 3 1 0 1111 3 0 444 3 3 666666 0 66 7777 1 6 7 0 66 66 2222222222222222222222222222222222222222222222222 2 55 88888 3 4 77 55 888888888888888888888888888888888888888888888888888888888888888888888 3 44 777777 555555555555555 3 55 5555555 55555555 99999 44444 3 2222222222222 0
lowQualScore : . . . . . . .... . . ... . . ...... . .. .... . . . . .. .. ................................................. . .. ..... . . .. .. ..................................................................... . .. ...... ............... . .. ....... ........ ..... ..... . ............. .
lowQualScore : 5 0 0 3 0 0 2222 2 2 000 2 0 888888 8 44 0000 0 4 8 7 00 99 4444444444444444444444444444444444444444444444444 4 00 11111 6 9 55 00 888888888888888888888888888888888888888888888888888888888888888888888 1 22 333333 666666666666666 3 66 6666666 99999999 11111 99999 3 0000000000000 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAATAA-NTTT--ATCGAG------T-ACCG----TA--------------------TC---------TGACCAATCAAATTCCGTTTTAC--ATA-C-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
Reference ( family-1868 ) : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAATAA-NTTT--ATCGAG------T-ACCG----TA--------------------TC---------TGACCAATCAAATTCCGTTTTAC--ATA-C-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
gi|1 : CGTTTTACTCATA-T-GTAGCACGCATATTTTTTC--CGAA---------A---------TGT----C-------A-------------AG------A--------T---CT-TCAAAAAG--GC--TGCA--C-ATTATAC--A------CA----A-GTAAAG-AAGATTTCAAT-TTT-TTTCTC
gi|10 : AAGAGCAAAGTAAACAA-ATTTC-ATCAAAC-----T-ACTG----TACTGGTGGCAATTATT-----TC---------TGAACAATCAAATTCTGTTTAAC--ATA-TTG-AGT-C------------------------------------------------------------------AA------A--------A---TT-TAAAAATATTGA--TGTGAGT-TATATAC--ATGATAACATTATA-ATATAG-GAGATGT--AT-ATTATTTCC--TGAAAATGATGTCTTAA-----AACGG-G-GG-TACACACaaggtaaatagtccattaagatttggatatctgtgttttggagacctgtatgttcagatgttaatttcagtacaatttctctattggcagttgattatagatgatgttttacctgctggagaacctttttttaaaattcagtccataatcattaaataagcaataaaaaaaaaaattctctaaaaatatttaaataaattgtggccggtcataatcaagctggctcaaaatctaaattaggtatgtatggtatttaaagactaacatatgtgcaagtgtcacctttcatatctgggtattgaaaaattgacttctgtca
gi|11 : AAAT-CCGTTTTAC--ATAAT-G-AGT-CGGACAACC-TTT--CAAA---------AATGGGGTTACGG----C-------G-------------AA------A--------A---TT-TTAACATATTAA--AACG--CATA-ATAT--A------CA----T-ATATGA-AAGATTT--AT-GTT-TTTTC--TGAGATTTAAGTCTTAAGGTCTAAA-G-TAGG-TGCGCACTA-------------TACATAAGAGCAAACTGTCCGTGAGTAAAAA
gi|12 : GACAGTCAATT--CAAA---------A---------TGAATGTC-------ACGGTGTAATTTTCAA------A--------A---CT-TTAAAATATTAG--TAAG--C-TTTATAT--A------AA----G-ATACAG-------------------------GGGATTTAGGTCCTCA-----ACC-A-T-GGATACACACTA-------------TAAAGGAATGCACATTAT
gi|14 : ta-------------AA------G--------A---TTGTTAAAATATTGA--TATG--T-GTTATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TCT-CCCTGTGATTTAGGTCTTAA-----AAA-A-A-GGAAATGCACTA-------------TACATGAGTGTGCATTATCTGTCAGTAGAAATa
gi|15 : T-TCAAAATATTGA--TGCG--C-CTTAGAT--A------CA----G-ATACTG-GAAATTA--A---GT-TTTCCTCTGAGATATAGGTCTTGA-----AAC-ATT-GA-TGAGCAGTT-------------TACACGAGTTCGCATTATTTATGAGTAAAAA
gi|16 : --------------------TC---------CGACCAATCAAATTTCATTTCAC--ATATC-G-AGT-TGAGCAGTTGTTT--TAAA---------A---------TGG----C-------ATGCACATCT----AA------ATGTTAAGCA---TT-TCAAAATATTGA--TGcg
gi|17 : tTT--AT-TTT-T----CCTGATATTTAGGTCTTAA-----AAC-A-T-GGACGCACACTG-------------TACACAAGTGTGCACTACCCATGAGTAAAAA
gi|18 : aattagcaatgcttgaTCAACTTGATTA----AATATCAGGAACGAGA-CAGGTTCAATAATATTC--GTCAAG------T-ca
gi|2 : gcCAATAA-TTTTTTATCGAG------TTACCA----TA--------------------TCAATAATTTCTGACCAATCAAATTCCGATTTTT--AT--T-G-AGT-TGGACAGTTGTTTGGCACA---------------------G----C-------G-------------AG------A--------T---TT-TTAAAATATTGATCTATG--T-TATATAC--A-------A----G-Atacaataccagtc
gi|20 : tttatggaaggttgattatagaggacgatttacctagccgcttcagtccacattcatttcaaatattttaaagcaatcaacataccacctctcctactaataataaattgtggcctaaactggctaaagattaggcaggtatgtatttaaaaacaagtttgtgaccaagtgtcactggtcatttctgggtattcaacaatggcttctcttactcctcttaattcagcaagtgctggcacatggctttta-GG-TGTGCGCTA-------------TACACAAGTGCACACTAACTGTGAGAAGAAAT
gi|3 : tgtgCACACAGTCTTGACA-CTTCCTTCTGGTTTACATAAAGTCCTAAATTAATTAAAGTTGT----GGTGATGCC--------CAACTCCATTA----ATTGTCATGAACAAGAACAAATTCAATCA-TTTTA-ATTGGGT-----T-ACCA----TACCAGTCTACTGGTAGTATTTTC---------TGACCAATCAAATTTCATTTAAC--ATGTC-A-AGC-TAGACAGTTGTTT--CAAA---------A---------TGA----CTTTT---ATGCTAGGATTTTCAA------A--------T---TT-TCAAAATATTCA--TGCA----TAT-TAT--A------TG----GAATACAG-GAG------AT-TTT-TTTTACATGAGGTGTAAGTCTT--------------------CACACTA-------------CACACAAGTGCAGATTATACATGTGTAg
gi|4 : tactttttattattgttgactttCAC-CATTCCTCACAGTTAGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTACCTT--GTGCCAACTCGATTA----AATATTGGAAACAAGAACAAATTCAATAA-ATTT--AGCAAG------T-ACC-----TA--------------------TT---------TGACCAATCATATTCCGATTTAC--ATT-C-C-AAC-T---CAGTCCTTT--TTAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TAAAAATATTGA--TGTG--T-TATATAT--A------CA----G-ATACAAAGAGATTT--ATATTT-TTTCCCCTGAACTTTAGGTCTTAA-----AAC-C-T-GG-TGCACACTA-------------TACATGAGTTCACACTATCTATGAGTAGAAATaga
gi|5 : atatttttgcattatatcaatacT-TGCCAT----AATTGA--GAAGTTTGAGCCATTGCTGTCATATG-GTT---TCAGTTATTTTAATATC--------------ATT---TAT-GTCC--ATCAAGATACGCT-ACTGGCAATAATT-----------------TC---------TGACCAATCAAATCCCGTTTTAC--ATA-T-GAAGT-CAGACAATCATTA--CAAAATGGCTGTCA---------TGG----C-------A-------------AG------A--------T---TT-TCAAAATATCGA--AATG--T-T---------------------G-ATACG------------------------CTGACATTTAGGTCTTAA-----AAC-A-T-GGTTGAGGACGA-------------TACATAAGTGC
gi|6 : ACA-TTGGCTTAAGTCATAT-AACCAT----AA-------AAGTCTTAGCAGGTGCTGCGAT--GAGTTAACT----------------GGGAAGAAGAGCAAATTCAATAG-TTTT--Aagataatatattataaatagaaacggttg
gi|7 : ataaaataacagcctcttatcaataatataaagtgttctgtcctagttaaaattggcttaaaatagcaaaacaggtataaacaaacaagtgtacaagtgtcacctgtcatttcagggtataaACCAATCAAATATTGTTTTAC--ATATT-G-AGT-CGGACAGagtgagtctactgacaaattt
gi|8 : taaaaatagctcaaaattgaaataaggtaagtatacctttttaaaaaagcacgtgttcaaatgtcacctgtcattttgggataataaaattatcttctgtcgtccctgaccgtaagtgagcaggcaataatgttcgagtaactgtaccagtctactagcaataatagtttGATCAATTAA-------TTTAC--ATA-CCA-AGC-CAGACAGTTGTTT--CAAA---------A---------TGG----TGTCGCAAA-------------AA------A--------A---TA-TCAAAATATTGA--TGCGCGT-TATATATGTA------CA----G-ATACAA-TGGATTT--CT-TTT-TTTCCCGTTAGATTTCAGTCTAAA-----AAT-G-TGGG-TGCACACTGCACAGTGACACTTTACATGAGTGCGCACTATCTGTGAGTAAAAa
gi|9 : tccaaA-GTCT--ATTGGC------A-ATCA----TT--------------------TC---------TGACCAATCAAATTCTATTTTAC--TTATC-A-GGT-CAAACAGATTTTT--CAAA---------A---------TGG----C-------A-------------AGCACTGCA--------AGATTT-TCAAAATACTGA--TGCGCAT-TATATAT----------G----G-ATTCAG-GAGATTC--AT-TTT-----CACTGAGATTTAGGTCTTAA-----AAC-A-T-GG-ta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTTTCTACTCGTATAAAATGTGCATAATTTTTCCGACTTTAAGATTTTCAAGAAGGGATGCGCATTATAATTATGTAAGTACAGAACTCAAATTTTGCATATCAAGTCTGACAGTCATAATTAAAAT
Unaligned ( gi|19 ): TAAATTGGTTCAAAATCTGAATAAGGTATGTACGGTATTTGAAAACAAACAGATATGTGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 2222 111 333333 1111 11 1111111111111111111111111111111111111111111111111 22222 888888888888888888888888888888888888888888888888888888888888888888888 111111 111111111111111 11111111 11111 1 2222222222222
lowQualScore : 5 1 1 3 1 0 1111 3 0 444 3 3 666666 0 66 7777 1 6 7 0 66 66 2222222222222222222222222222222222222222222222222 2 55 88888 3 4 77 55 888888888888888888888888888888888888888888888888888888888888888888888 3 44 777777 555555555555555 3 55 5555555 55555555 99999 44444 3 2222222222222 0
lowQualScore : . . . . . . .... . . ... . . ...... . .. .... . . . . .. .. ................................................. . .. ..... . . .. .. ..................................................................... . .. ...... ............... . .. ....... ........ ..... ..... . ............. .
lowQualScore : 5 0 0 3 0 0 2222 2 2 000 2 0 888888 8 44 0000 0 4 8 7 00 99 4444444444444444444444444444444444444444444444444 4 00 11111 6 9 55 00 888888888888888888888888888888888888888888888888888888888888888888888 1 22 333333 666666666666666 3 66 6666666 99999999 11111 99999 3 0000000000000 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAATAA-NTTT--ATCGAG------T-ACCG----TA--------------------TC---------TGACCAATCAAATTCCGTTTTAC--ATA-C-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
Reference ( family-1868 ) : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAATAA-NTTT--ATCGAG------T-ACCG----TA--------------------TC---------TGACCAATCAAATTCCGTTTTAC--ATA-C-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
gi|1 : CGTTTTACTCATA-T-GTAGCACGCATATTTTTTC--CGAA---------A---------TGT----C-------A-------------AG------A--------T---CT-TCAAAAAG--GC--TGCA--C-ATTATAC--A------CA----A-GTAAAG-AAGATTTCAAT-TTT-TTTCTC
gi|10 : AAGAGCAAAGTAAACAA-ATTTC-ATCAAAC-----T-ACTG----TACTGGTGGCAATTATT-----TC---------TGAACAATCAAATTCTGTTTAAC--ATA-TTG-AGT-C------------------------------------------------------------------AA------A--------A---TT-TAAAAATATTGA--TGTGAGT-TATATAC--ATGATAACATTATA-ATATAG-GAGATGT--AT-ATTATTTCC--TGAAAATGATGTCTTAA-----AACGG-G-GG-TACACACaaggtaaatagtccattaagatttggatatctgtgttttggagacctgtatgttcagatgttaatttcagtacaatttctctattggcagttgattatagatgatgttttacctgctggagaacctttttttaaaattcagtccataatcattaaataagcaataaaaaaaaaaattctctaaaaatatttaaataaattgtggccggtcataatcaagctggctcaaaatctaaattaggtatgtatggtatttaaagactaacatatgtgcaagtgtcacctttcatatctgggtattgaaaaattgacttctgtca
gi|11 : AAAT-CCGTTTTAC--ATAAT-G-AGT-CGGACAACC-TTT--CAAA---------AATGGGGTTACGG----C-------G-------------AA------A--------A---TT-TTAACATATTAA--AACG--CATA-ATAT--A------CA----T-ATATGA-AAGATTT--AT-GTT-TTTTC--TGAGATTTAAGTCTTAAGGTCTAAA-G-TAGG-TGCGCACTA-------------TACATAAGAGCAAACTGTCCGTGAGTAAAAA
gi|12 : GACAGTCAATT--CAAA---------A---------TGAATGTC-------ACGGTGTAATTTTCAA------A--------A---CT-TTAAAATATTAG--TAAG--C-TTTATAT--A------AA----G-ATACAG-------------------------GGGATTTAGGTCCTCA-----ACC-A-T-GGATACACACTA-------------TAAAGGAATGCACATTAT
gi|14 : ta-------------AA------G--------A---TTGTTAAAATATTGA--TATG--T-GTTATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TCT-CCCTGTGATTTAGGTCTTAA-----AAA-A-A-GGAAATGCACTA-------------TACATGAGTGTGCATTATCTGTCAGTAGAAATa
gi|15 : T-TCAAAATATTGA--TGCG--C-CTTAGAT--A------CA----G-ATACTG-GAAATTA--A---GT-TTTCCTCTGAGATATAGGTCTTGA-----AAC-ATT-GA-TGAGCAGTT-------------TACACGAGTTCGCATTATTTATGAGTAAAAA
gi|16 : --------------------TC---------CGACCAATCAAATTTCATTTCAC--ATATC-G-AGT-TGAGCAGTTGTTT--TAAA---------A---------TGG----C-------ATGCACATCT----AA------ATGTTAAGCA---TT-TCAAAATATTGA--TGcg
gi|17 : tTT--AT-TTT-T----CCTGATATTTAGGTCTTAA-----AAC-A-T-GGACGCACACTG-------------TACACAAGTGTGCACTACCCATGAGTAAAAA
gi|18 : aattagcaatgcttgaTCAACTTGATTA----AATATCAGGAACGAGA-CAGGTTCAATAATATTC--GTCAAG------T-ca
gi|2 : gcCAATAA-TTTTTTATCGAG------TTACCA----TA--------------------TCAATAATTTCTGACCAATCAAATTCCGATTTTT--AT--T-G-AGT-TGGACAGTTGTTTGGCACA---------------------G----C-------G-------------AG------A--------T---TT-TTAAAATATTGATCTATG--T-TATATAC--A-------A----G-Atacaataccagtc
gi|20 : tttatggaaggttgattatagaggacgatttacctagccgcttcagtccacattcatttcaaatattttaaagcaatcaacataccacctctcctactaataataaattgtggcctaaactggctaaagattaggcaggtatgtatttaaaaacaagtttgtgaccaagtgtcactggtcatttctgggtattcaacaatggcttctcttactcctcttaattcagcaagtgctggcacatggctttta-GG-TGTGCGCTA-------------TACACAAGTGCACACTAACTGTGAGAAGAAAT
gi|3 : tgtgCACACAGTCTTGACA-CTTCCTTCTGGTTTACATAAAGTCCTAAATTAATTAAAGTTGT----GGTGATGCC--------CAACTCCATTA----ATTGTCATGAACAAGAACAAATTCAATCA-TTTTA-ATTGGGT-----T-ACCA----TACCAGTCTACTGGTAGTATTTTC---------TGACCAATCAAATTTCATTTAAC--ATGTC-A-AGC-TAGACAGTTGTTT--CAAA---------A---------TGA----CTTTT---ATGCTAGGATTTTCAA------A--------T---TT-TCAAAATATTCA--TGCA----TAT-TAT--A------TG----GAATACAG-GAG------AT-TTT-TTTTACATGAGGTGTAAGTCTT--------------------CACACTA-------------CACACAAGTGCAGATTATACATGTGTAg
gi|4 : tactttttattattgttgactttCAC-CATTCCTCACAGTTAGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTACCTT--GTGCCAACTCGATTA----AATATTGGAAACAAGAACAAATTCAATAA-ATTT--AGCAAG------T-ACC-----TA--------------------TT---------TGACCAATCATATTCCGATTTAC--ATT-C-C-AAC-T---CAGTCCTTT--TTAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TAAAAATATTGA--TGTG--T-TATATAT--A------CA----G-ATACAAAGAGATTT--ATATTT-TTTCCCCTGAACTTTAGGTCTTAA-----AAC-C-T-GG-TGCACACTA-------------TACATGAGTTCACACTATCTATGAGTAGAAATaga
gi|5 : atatttttgcattatatcaatacT-TGCCAT----AATTGA--GAAGTTTGAGCCATTGCTGTCATATG-GTT---TCAGTTATTTTAATATC--------------ATT---TAT-GTCC--ATCAAGATACGCT-ACTGGCAATAATT-----------------TC---------TGACCAATCAAATCCCGTTTTAC--ATA-T-GAAGT-CAGACAATCATTA--CAAAATGGCTGTCA---------TGG----C-------A-------------AG------A--------T---TT-TCAAAATATCGA--AATG--T-T---------------------G-ATACG------------------------CTGACATTTAGGTCTTAA-----AAC-A-T-GGTTGAGGACGA-------------TACATAAGTGC
gi|6 : ACA-TTGGCTTAAGTCATAT-AACCAT----AA-------AAGTCTTAGCAGGTGCTGCGAT--GAGTTAACT----------------GGGAAGAAGAGCAAATTCAATAG-TTTT--Aagataatatattataaatagaaacggttg
gi|7 : ataaaataacagcctcttatcaataatataaagtgttctgtcctagttaaaattggcttaaaatagcaaaacaggtataaacaaacaagtgtacaagtgtcacctgtcatttcagggtataaACCAATCAAATATTGTTTTAC--ATATT-G-AGT-CGGACAGagtgagtctactgacaaattt
gi|8 : taaaaatagctcaaaattgaaataaggtaagtatacctttttaaaaaagcacgtgttcaaatgtcacctgtcattttgggataataaaattatcttctgtcgtccctgaccgtaagtgagcaggcaataatgttcgagtaactgtaccagtctactagcaataatagtttGATCAATTAA-------TTTAC--ATA-CCA-AGC-CAGACAGTTGTTT--CAAA---------A---------TGG----TGTCGCAAA-------------AA------A--------A---TA-TCAAAATATTGA--TGCGCGT-TATATATGTA------CA----G-ATACAA-TGGATTT--CT-TTT-TTTCCCGTTAGATTTCAGTCTAAA-----AAT-G-TGGG-TGCACACTGCACAGTGACACTTTACATGAGTGCGCACTATCTGTGAGTAAAAa
gi|9 : tccaaA-GTCT--ATTGGC------A-ATCA----TT--------------------TC---------TGACCAATCAAATTCTATTTTAC--TTATC-A-GGT-CAAACAGATTTTT--CAAA---------A---------TGG----C-------A-------------AGCACTGCA--------AGATTT-TCAAAATACTGA--TGCGCAT-TATATAT----------G----G-ATTCAG-GAGATTC--AT-TTT-----CACTGAGATTTAGGTCTTAA-----AAC-A-T-GG-ta
blockSeqs : . T C G A . . T G A A ATATG CC TTTT T A A TA TT TTACCATACCAGTCTACTGGTAGTATTTTC T . TTG . G CA GG ATGAATGTCACGGTGTAATTTTCAAAA G TC AGTTA ATGATAACATTAT A AG TATAT TTTCCTC GGTCT GTA A CACAGTGACACTT
blockSeqs : . G . . T G A C TTGT CG . A G A T A ATACGCTACTGGCAATAATTTC T . ATG . G TG . ATGGCATGCACATCTAAATGTTAAGCA . . CGTTA GTACA . G TATA TTTTACA . ATT A .
blockSeqs : . . . . A A ATGA CA . A G G T . TTACCATATCAATAATTTC T . TCG . G TG . ATGACTTTTATGCTAGGATTTTCAAAT . . CATTA ACA . A TATG TTTCCCC . GTG A .
blockSeqs : . . . . . A . AATCATTTC T . TCA . A TG . AATGGGGTTACGGCGAAAA . . CATA AAA . G TATT TTTCCCG . AT T .
blockSeqs : . G . TACCTATT C . TGA . A CC . ATGGCTGTCATGGCAAGAT . . CTT ACA . G TATT TCTCCC . AA . .
blockSeqs : T . A . TTG . G CA . ATGGCAAGCACTGCAAGAT . . TGT ACA . G TCTT TTTTC . AT . .
blockSeqs : G . T . CCA . A TG . ATGGTGTCGCAAAAAAA . . CCT ATG . T CATT TCC . CT . .
blockSeqs : . . TCA . A TT . ATGGCAAAAA . . TTA ACA . G ATT CAC . AT . .
blockSeqs : . . TG . . C . GCGAGAT . . TTA AA . . AA C . AT . .
blockSeqs : . CC . . . . AAAA . . TA G . . . . . . .
blockSeqs : . . TT . . . .
blockSeqs : . .
blockSeqCons : ** TTACCTACCAATAATTTC******************************* ** TATT*** TTTCCCC* AT***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAATAA-NTTT--ATCGAG------T-ACCG----TA--------------------TC---------TGACCAATCAAATTCCGTTTTAC--ATA-C-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACAG-GAGATTT--AT-TTT-TTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAATAA-NTTT--ATCGAGTTACCTACCAATAATTTC-------------------------------TGACCAATCAAATTCCGTTTTAC--ATA-C-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGCG--T-TATATAT--A------CA----G-ATACAG-GAGATTTATT---TTTTTCCCC-TGAGATTTAGGTCTTAA-----AACAT---GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTTTCTACTCGTATAAAATGTGCATAATTTTTCCGACTTTAAGATTTTCAAGAAGGGATGCGCATTATAATTATGTAAGTACAGAACTCAAATTTTGCATATCAAGTCTGACAGTCATAATTAAAAT
Unaligned ( gi|19 ): TAAATTGGTTCAAAATCTGAATAAGGTATGTACGGTATTTGAAAACAAACAGATATGTGTA
Alignments
lowQualScore : 1 1 1 2222 111 333333 1111 11 5555555555555555555555555555555555555555 22222 888888888888888888888888888888888888888888888888888888888888888888888 111111 1111111111111 11111 11111 1 2222222222222
lowQualScore : 5 1 1 3 1 0 1111 3 0 444 3 3 666666 0 66 7777 1 6 7 4 55 99 4 4 5555555555555555555555555555555555555555 2 55 88888 3 4 77 55 888888888888888888888888888888888888888888888888888888888888888888888 3 44 44 222222 5555555555555 3 55 777777 44444 99999 11111 3 2222222222222 0
lowQualScore : . . . . . . .... . . ... . . ...... . .. .... . . . . .. .. . . ........................................ . .. ..... . . .. .. ..................................................................... . .. .. ...... ............. . .. ...... ..... ..... ..... . ............. .
lowQualScore : 5 0 0 3 0 0 2222 2 2 000 2 0 888888 8 44 0000 0 4 8 4 44 44 4 4 9999999999999999999999999999999999999999 4 00 11111 6 9 55 00 888888888888888888888888888888888888888888888888888888888888888888888 1 22 66 888888 6666666666666 3 66 888888 22222 11111 11111 3 0000000000000 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAA-TAA-NTTT--A-TCGAGT-T-----AC-C----TAC------CAAT-----------AATTTCTGACCAATCAAATTCCGTTTTAC--ATATC-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGC--G--T-TATATAT------ACA----G-ATACAG-GAGATTT--AT-TTTTTTCCCCTGAGATTTAGGTCTTAA-----AAC-G-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
Reference ( family-1868 ) : NNNNNNNNNNNNNNNNNNNNNNNCACACANTCCTNACA-TTNGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTGCCAT--G-GTCAACTCGATTA----AATATCGGGAACAAGAGCAAATTCAA-TAA-NTTT--A-TCGAGT-T-----AC-C----TAC------CAAT-----------AATTTCTGACCAATCAAATTCCGTTTTAC--ATA-C-G-AGT-CGGACAGTCGTTT--CAAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TCAAAATATTGA--TGC--G--T-TATATAT------ACA----G-ATACAG-GAGATTT--AT-TTTTTTCCCCTGAGATTTAGGTCTTAA-----AAC-A-T-GG-TGCGCACTA-------------TACACGAGTGCGCACTATCCGTGAGTAGAAAT
gi|1 : CGTTTTACTCATA-T-GTAGCACGCATATTTTTTC--CGAA---------A---------TGT----C-------A-------------AG------A--------T---CT-TCAAAAAG--GC--TGC--A--C-ATTATAC------ACA----A-GTAAAG-AAGATTTCAAT-TTTTTTCTC
gi|10 : AAGAGCAAAGTAAA-CAA-ATTTC-A-TCAAAC-T-----AC-TG---TACTGGTGGCAAT-----------TATTTCTGAACAATCAAATTCTGTTTAAC--ATATT-G-AGT-C------------------------------------------------------------------AA------A--------A---TT-TAAAAATATTGA--TGTGAG--T-TATATACATGATAACATTATA-ATATAG-GAGATGT--ATATTATTT--CCTGAAAATGATGTCTTAA-----AACGG-G-GG-TACACACaaggtaaatagtccattaagatttggatatctgtgttttggagacctgtatgttcagatgttaatttcagtacaatttctctattggcagttgattatagatgatgttttacctgctggagaacctttttttaaaattcagtccataatcattaaataagcaataaaaaaaaaaattctctaaaaatatttaaataaattgtggccggtcataatcaagctggctcaaaatctaaattaggtatgtatggtatttaaagactaacatatgtgcaagtgtcacctttcatatctgggtattgaaaaattgacttctgtca
gi|11 : AAAT-CCGTTTTAC--ATAAT-G-AGT-CGGACAACC-TTT--CAAA---------AATGGGGTTACGG----C-------G-------------AA------A--------A---TT-TTAACATATTAA--AAC--G--CATA-ATAT------ACA----T-ATATGA-AAGATTT--AT-GTTTTTTC--TGAGATTTAAGTCTTAAGGTCTAAA-G-TAGG-TGCGCACTA-------------TACATAAGAGCAAACTGTCCGTGAGTAAAAA
gi|12 : GACAGTCAATT--CAAA---------A---------TGAATGTC-------ACGGTGTAATTTTCAA------A--------A---CT-TTAAAATATTAG--TAA--G--C-TTTATAT------AAA----G-ATACAG------------------------GGGATTTAGGTCCTCA-----ACC-A-T-GGATACACACTA-------------TAAAGGAATGCACATTAT
gi|14 : ta-------------AA------G--------A---TTGTTAAAATATTGA--TAT--G--T-GTTATAT------ACA----G-ATACAG-GAGATTT--AT-TTTTCT-CCCTGTGATTTAGGTCTTAA-----AAA-A-A-GGAAATGCACTA-------------TACATGAGTGTGCATTATCTGTCAGTAGAAATa
gi|15 : T-TCAAAATATTGA--TGC--G--C-CTTAGAT------ACA----G-ATACTG-GAAATTA--A---GTTTTCCTCTGAGATATAGGTCTTGA-----AAC-ATT-GA-TGAGCAGTT-------------TACACGAGTTCGCATTATTTATGAGTAAAAA
gi|16 : TTCCGACCAATCAAATTTCATTTCAC--ATATC-G-AGT-TGAGCAGTTGTTT--TAAA---------A---------TGG----C-------ATGCACATCT----AA------ATGTTAAGCA---TT-TCAAAATATTGA--TGcg
gi|17 : TT--AT-TTTT----CCTGATATTTAGGTCTTAA-----AAC-A-T-GGACGCACACTG-------------TACACAAGTGTGCACTACCCATGAGTAAAAA
gi|18 : aattagcaatgcttgaTCAACTTGATTA----AATATCAGGAACGAGA-CAGGTTCAA-TAATATTC--G-TCAAGT-T-----ACAA----TAC------CAGT-----------ca
gi|2 : gcCAA-TAA-TTTTTTA-TCGAGT-T-----AC-CA---TAT------CAAT-----------AATTTCTGACCAATCAAATTCCGATTTTT--AT--T-G-AGT-TGGACAGTTGTTTGGCACA---------------------G----C-------G-------------AG------A--------T---TT-TTAAAATATTGATCTAT--G--T-TATATAC------A-A----G-Ac
gi|20 : tttatggaaggttgattatagaggacgatttacctagccgcttcagtccacattcatttcaaatattttaaagcaatcaacataccacctctcctactaataataaattgtggcctaaactggctaaagattaggcaggtatgtatttaaaaacaagtttgtgaccaagtgtcactggtcatttctgggtattcaacaatggcttctcttactcctcttaattcagcaagtgctggcacatggctttta-GG-TGTGCGCTA-------------TACACAAGTGCACACTAACTGTGAGAAGAAAT
gi|3 : tgtgCACACAGTCTTGACA-CTTCCTTCTGGTTTACATAAAGTCCTAAATTAATTAAAGTTGT----GGTGATGCC--------CAACTCCATTA----ATTGTCATGAACAAGAACAAATTCAA-TCA-TTTT--AATTGGGT-T-----AC-CA---TAC------CAGTCTACTGGTAGTATTTTCTGACCAATCAAATTTCATTTAAC--ATGTC-A-AGC-TAGACAGTTGTTT--CAAA---------A---------TGA----CTTTT---ATGCTAGGATTTTCAA------A--------T---TT-TCAAAATATTCA--TGC--A----TAT-TAT------ATG----GAATACAG-GAG------AT-TTTTTTTACATGAGGTGTAAGTCTT--------------------CACACTA-------------CACACAAGTGCAGATTATACATGTGTAg
gi|4 : tactttttattattgttgactttCAC-CATTCCTCACAGTTAGCTTCTGGTATAT-TACCGT----AATTGA--GAAGTTTTAGCAGGTGCTACCTT--GTGCCAACTCGATTA----AATATTGGAAACAAGAACAAATTCAA-TAA-ATTT--A-GCAAGT-------AC-C----TA--------------------------TTTGACCAATCATATTCCGATTTAC--ATT-C-C-AAC-T---CAGTCCTTT--TTAA---------A---------TGG----C-------A-------------AA------A--------A---TT-TAAAAATATTGA--TGT--G--T-TATATAT------ACA----G-ATACAAAGAGATTT--ATATTTTTTCCCCTGAACTTTAGGTCTTAA-----AAC-C-T-GG-TGCACACTA-------------TACATGAGTTCACACTATCTATGAGTAGAAATaga
gi|5 : atatttttgcattatatcaatacT-TGCCAT----AATTGA--GAAGTTTGAGCCATTGCTGTCATATG-GTT---TCAGTTATTTTAATATC--------------ATT----TAT-GTCC--A-TCAAGA-T-----ACGC----TACTGG---CAAT-----------AATTTCTGACCAATCAAATCCCGTTTTAC--ATA-T-GAAGT-CAGACAATCATTA--CAAAATGGCTGTCA---------TGG----C-------A-------------AG------A--------T---TT-TCAAAATATCGA--AAT--G--T-T-------------------G-ATACG-----------------------CTGACATTTAGGTCTTAA-----AAC-A-T-GGTTGAGGACGA-------------TACATAAGTGC
gi|6 : ACA-TTGGCTTAAGTCATAT-AACCAT----AA-------AAGTCTTAGCAGGTGCTGCGAT--GAGTTAACT----------------GGGAAGAAGAGCAAATTCAA-TAG-TTTTA-A-GTGAGT----------C----TAC------TGACA----------AATTTagataatatattataaatagaaacggttg
gi|7 : ataaaataacagcctcttatcaataatataaagtgttctgtcctagttaaaattggcttaaaatagcaaaacaggtataaacaaacaagtgtacaagtgtcacctgtcatttcagggtataaTTCGAGTAA-CTGT--A-CC-AGTCT-----AC------TAG------CAAT-----------AATAGTTTACCAATCAAATATTGTTTTAC--ATATT-G-AGT-CGGACAG
gi|8 : taaaaatagctcaaaattgaaataaggtaagtatacctttttaaaaaagcacgtgttcaaatgtcacctgtcattttgggataataaaattatcttctgtcgtccctgaccgtaagtgagcaggcaataatgGATCAATTAA-------TTTAC--ATA-CCA-AGC-CAGACAGTTGTTT--CAAA---------A---------TGG----TGTCGCAAA-------------AA------A--------A---TA-TCAAAATATTGA--TGC--GCGT-TATATATGT----ACA----G-ATACAA-TGGATTT--CT-TTTTTTCCCGTTAGATTTCAGTCTAAA-----AAT-G-TGGG-TGCACACTGCACAGTGACACTTTACATGAGTGCGCACTATCTGTGAGTAAAAa
gi|9 : tccaaCAG-TAA-TTTTT-A-TCAAGT-TGATGTAC-CAGTCTATTGG---CAAT-----------CATTTCTGACCAATCAAATTCTATTTTAC--TTATC-A-GGT-CAAACAGATTTTT--CAAA---------A---------TGG----C-------A-------------AGCACTGCA--------AGATTT-TCAAAATACTGA--TGC--GCAT-TATATAT--------G----G-ATTCAG-GAGATTC--AT-TTT----CACTGAGATTTAGGTCTTAA-----AAC-A-T-GG-ta
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTGTTTCTACTCGTATAAAATGTGCATAATTTTTCCGACTTTAAGATTTTCAAGAAGGGATGCGCATTATAATTATGTAAGTACAGAACTCAAATTTTGCATATCAAGTCTGACAGTCATAATTAAAAT
Unaligned ( gi|19 ): TAAATTGGTTCAAAATCTGAATAAGGTATGTACGGTATTTGAAAACAAACAGATATGTGTA