lowQualScore : 1 22
lowQualScore : 0 88 0 0 22 2 2 6 2 5 3 3
lowQualScore : . .. . . .. . . . . . . .
lowQualScore : 4 11 4 9 11 7 9 1 9 9 1 1
consensus : CTGTCCTCATAGACAGATCACATTTGTGACACTCTCTCCATCATATGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
Reference ( gi|3 ) : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|2 : CTGTCCTCATAGATAGATCCCACTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|8 : CTGTCCTCA--GACAGATCCCATTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGACA-TGCTTACTGCTCAGATT-GTGAA
gi|4 : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCGTCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAATAC-TTAATTCAGGTTTAAGTATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCAAATTGCTCAGATT-GAGA
gi|7 : CTGTCTTCATAGACAGATCATATTTGTGACACTCTCTCCATCATATG--GTTTTGCCATATTTCTGTAGAGCT-ACTAACCC-TTAATTCAAATTGAAATATCTGCAAGATCACAC-TGAATTTCCATGGTCA-TGCTTATTGCTCAGATTAGTGA
gi|1 : CTGTCCTCACAGACAGATCCCATTTGTGACACTCTCTCCAACATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCCATTAATTCTGGTTGAAATATCTGGTAGATCACTC-TGAATAAAAATTGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|11 : CTGTCCTCATAGACAGATCACATTCGTGACACTCTCTCCATTATATG--GTTTTGCCATATTTCTGTACAGCT-ACCAACCC-TTAATTCAGGTTGAA--ATGTGCAAGATCACAC-TAAATTCATATGGGCA-TGCTTATTGCTTAGATT-GTGA
gi|10 : CTGTCCTCATAGACATATCACATTTGTGACATTCTCTCCTTCATATG--GTTTTGCCATATTTCTGTAGAACT-ACCAACCT-TTAAGTCAGGTTGAAATAACTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTGTTTGCTCAGATT--TGAA
gi|12 : CTGTCCTCTTATATA--TCACATTTGTGACACTCT--CCTTCATATG--GTTTTGCCATATAACTGTATTGCT-ACCAACCC-TTAATACAGGTTGAAAGAACTGCAAGTTCACACTTGAATTCACATGAACA-TGATTATTGCTCAAATT-
gi|13 : CTGTCCTCATAGACGTATAACATTTGTAACACTCTCTCCTTGATATG--GTTT-GTCATATTTTTGTAGAGCT-ACCAATCC-TTAATTCAGGTTGAAATAACTGCAATATCACAC-TG
gi|9 : TGTCCTCATAGACAGATCACATTTGTGACACTTTCTCCATCATATG--GTTTTGCCATATTTCTGTAGAGCT-ACCAACCT-TTAATTCAGGTTGAAATATCTGCAAGATCACGC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|6 : TGTCCTTATACACATATCACATGTGTGACACTCTCCTCTTCATATG--GTTTTGTCATATTTCTGTAGAGCC-ACCAACCC-TTAATTCAAGTTGAAATATCTGCAAGATCACAC-TGAAGTCCCATAGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|5 : tGTCCTCATAGACAGATCCCATTTGTGACACTCT--CCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ATCAATCC-TTAATTCAGGTTGAAATATCTGCAAAATTACAC-TGAATTCCAATGGGCA-TGCTTATTACTCAGATT-GTGAA
gi|16 : caTATAGTTTTGTCATATTTCTGTAGAGCT-ACCAACC
gi|14 : cttcaTATTTTTATAAAATTTATTAACCT-TCAATT-AAGTTGGAAAAACTTCAAAGCCACAT-AGAATTGCCGTGGATA-TGCTTATCGCTCCCACT-GTG
gi|15 : CT-ACCAACCC-TTAATTCAGGTTGAAAAATCTGTAAGATCACAC--GAATTCCCATTGACATTGCTTATTGCTCAGCTT-ATGAtat
Alignments
lowQualScore : 22
lowQualScore : 2 0 33 2 2 1 2 1 2 2
lowQualScore : . . .. . . . . . . .
lowQualScore : 1 2 33 5 7 2 7 9 9 9
consensus : CTGTCCTCATAGACAGATCNCATTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
Reference ( family-1865 ) : CTGTCCTCATAGACAGATCACATTTGTGACACTCTCTCCATCATATGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|1 : CTGTCCTCACAGACAGATCCCATTTGTGACACTCTCTCCAACATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCCATTAATTCTGGTTGAAATATCTGGTAGATCACTC-TGAATAAAAATTGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|10 : CTGTCCTCATAGACATATCACATTTGTGACATTCTCTCCTTCATATG--GTTTTGCCATATTTCTGTAGAACT-ACCAACCT-TTAAGTCAGGTTGAAATAACTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTGTTTGCTCAGATT--TGAA
gi|11 : CTGTCCTCATAGACAGATCACATTCGTGACACTCTCTCCATTATATG--GTTTTGCCATATTTCTGTACAGCT-ACCAACCC-TTAATTCAGGTTGAAATG--TGCAAGATCACAC-TAAATTCATATGGGCA-TGCTTATTGCTTAGATT-GTGA
gi|12 : CTGTCCTCTTATATA--TCACATTTGTGACACTCTC--CTTCATATG--GTTTTGCCATATAACTGTATTGCT-ACCAACCC-TTAATACAGGTTGAAAGAACTGCAAGTTCACACTTGAATTCACATGAACA-TGATTATTGCTCAAATT-
gi|13 : CTGTCCTCATAGACGTATAACATTTGTAACACTCTCTCCTTGATATG--GTTT-GTCATATTTTTGTAGAGCT-ACCAATCC-TTAATTCAGGTTGAAATAACTGCAATATCACAC-TG
gi|14 : TATTTTTATAAAATTTATTAACCT-TCAATT-AAGTTGGAAAAACTTCAAAGCCACAT-AGAATTGCCGTGGATA-TGCTTATCGCTCCCACT-GTG
gi|15 : CT-ACCAACCC-TTAATTCAGGTTGAAAAATCTGTAAGATCACAC--GAATTCCCATTGACATTGCTTATTGCTCAGCTT-ATGAtat
gi|16 : TCATATA--GTTTTGTCATATTTCTGTAGAGCT-ACCAACC
gi|2 : ctCTGTCCTCATAGATAGATCCCACTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|3 : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|4 : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCGTCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAATAC-TTAATTCAGGTTTAAGTATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCAAATTGCTCAGATT-GAGA
gi|5 : GTCCTCATAGACAGATCCCATTTGTGACACTCT--CCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ATCAATCC-TTAATTCAGGTTGAAATATCTGCAAAATTACAC-TGAATTCCAATGGGCA-TGCTTATTACTCAGATT-GTGAA
gi|6 : caTGTCCTTATACACATATCACATGTGTGACACTCTCCTCTTCATATG--GTTTTGTCATATTTCTGTAGAGCC-ACCAACCC-TTAATTCAAGTTGAAATATCTGCAAGATCACAC-TGAAGTCCCATAGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|7 : tCTGTCTTCATAGACAGATCATATTTGTGACACTCTCTCCATCATATG--GTTTTGCCATATTTCTGTAGAGCT-ACTAACCC-TTAATTCAAATTGAAATATCTGCAAGATCACAC-TGAATTTCCATGGTCA-TGCTTATTGCTCAGATTAGTGA
gi|8 : CTGTCCTCA--GACAGATCCCATTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGACA-TGCTTACTGCTCAGATT-GTGAA
gi|9 : TGTCCTCATAGACAGATCACATTTGTGACACTTTCTCCATCATATG--GTTTTGCCATATTTCTGTAGAGCT-ACCAACCT-TTAATTCAGGTTGAAATATCTGCAAGATCACGC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
Alignments
lowQualScore : 11
lowQualScore : 1 0 99 2 2 1 2 1 2 2
lowQualScore : . . .. . . . . . . .
lowQualScore : 0 2 11 5 7 2 7 9 9 9
consensus : CTGTCCTCATAGACAGATCNCATTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
Reference ( family-1865 ) : CTGTCCTCATAGACAGATCNCATTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|1 : CTGTCCTCACAGACAGATCCCATTTGTGACACTCTCTCCAACATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCCATTAATTCTGGTTGAAATATCTGGTAGATCACTC-TGAATAAAAATTGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|10 : CTGTCCTCATAGACATATCACATTTGTGACATTCTCTCCTTCATATG--GTTTTGCCATATTTCTGTAGAACT-ACCAACCT-TTAAGTCAGGTTGAAATAACTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTGTTTGCTCAGATT--TGAA
gi|11 : CTGTCCTCATAGACAGATCACATTCGTGACACTCTCTCCATTATATG--GTTTTGCCATATTTCTGTACAGCT-ACCAACCC-TTAATTCAGGTTGAAATG--TGCAAGATCACAC-TAAATTCATATGGGCA-TGCTTATTGCTTAGATT-GTGA
gi|12 : CTGTCCTCTTATATA--TCACATTTGTGACACTCTC--CTTCATATG--GTTTTGCCATATAACTGTATTGCT-ACCAACCC-TTAATACAGGTTGAAAGAACTGCAAGTTCACACTTGAATTCACATGAACA-TGATTATTGCTCAAATT-
gi|13 : CTGTCCTCATAGACGTATAACATTTGTAACACTCTCTCCTTGATATG--GTTT-GTCATATTTTTGTAGAGCT-ACCAATCC-TTAATTCAGGTTGAAATAACTGCAATATCACAC-TG
gi|14 : TATTTTTATAAAATTTATTAACCT-TCAATT-AAGTTGGAAAAACTTCAAAGCCACAT-AGAATTGCCGTGGATA-TGCTTATCGCTCCCACT-GTG
gi|15 : CT-ACCAACCC-TTAATTCAGGTTGAAAAATCTGTAAGATCACAC--GAATTCCCATTGACATTGCTTATTGCTCAGCTT-ATGAtat
gi|16 : TATAGTTTTGTCATATTTCTGTAGAGCT-ACCAACC
gi|2 : cttcaCTGTCCTCATAGATAGATCCCACTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|3 : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|4 : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCGTCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAATAC-TTAATTCAGGTTTAAGTATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCAAATTGCTCAGATT-GAGA
gi|5 : GTCCTCATAGACAGATCCCATTTGTGACACTCT--CCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ATCAATCC-TTAATTCAGGTTGAAATATCTGCAAAATTACAC-TGAATTCCAATGGGCA-TGCTTATTACTCAGATT-GTGAA
gi|6 : caTGTCCTTATACACATATCACATGTGTGACACTCTCCTCTTCATATG--GTTTTGTCATATTTCTGTAGAGCC-ACCAACCC-TTAATTCAAGTTGAAATATCTGCAAGATCACAC-TGAAGTCCCATAGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|7 : tCTGTCTTCATAGACAGATCATATTTGTGACACTCTCTCCATCATATG--GTTTTGCCATATTTCTGTAGAGCT-ACTAACCC-TTAATTCAAATTGAAATATCTGCAAGATCACAC-TGAATTTCCATGGTCA-TGCTTATTGCTCAGATTAGTGA
gi|8 : CTGTCCTCA--GACAGATCCCATTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGACA-TGCTTACTGCTCAGATT-GTGAA
gi|9 : TGTCCTCATAGACAGATCACATTTGTGACACTTTCTCCATCATATG--GTTTTGCCATATTTCTGTAGAGCT-ACCAACCT-TTAATTCAGGTTGAAATATCTGCAAGATCACGC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
blockSeqs : A TA T . A T C T A
blockSeqs : A TG . . A . T . .
blockSeqs : A TG . . A . C . .
blockSeqs : A TG . . A . C . .
blockSeqs : C TG . . T . C . .
blockSeqs : C TG . . T . A . .
blockSeqs : C . . . T . A . .
blockSeqs : C . . . T . A . .
blockSeqs : A . . . T . A . .
blockSeqs : A . . . T . C . .
blockSeqs : C . . . T . C . .
blockSeqs : A . . . T . A . .
blockSeqs : . . . T . C . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : **
originalCons : CTGTCCTCATAGACAGATCNCATTTGTGACACTCTCTCCATCATGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
finalCons : CTGTCCTCATAGACAGATCNCATTTGTGACACTCTCTCCATCATGTG--GTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
Alignments
lowQualScore : 11
lowQualScore : 1 0 33 99 2 2 1 2 1 2 2
lowQualScore : . . .. .. . . . . . . .
lowQualScore : 0 2 99 66 5 7 2 7 9 9 9
consensus : CTGTCCTCATAGACAGATCNCATTTGTGACACTCTCTCCATCA--TGTG--GTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
Reference ( family-1865 ) : CTGTCCTCATAGACAGATCNCATTTGTGACACTCTCTCCATCA--TGTG--GTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|1 : CTGTCCTCACAGACAGATCCCATTTGTGACACTCTCTCCAACA--TGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCCATTAATTCTGGTTGAAATATCTGGTAGATCACTC-TGAATAAAAATTGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|10 : CTGTCCTCATAGACATATCACATTTGTGACATTCTCTCCTTCA--TATG--GTTTTGCCATATTTCTGTAGAACT-ACCAACCT-TTAAGTCAGGTTGAAATAACTGCAAGATCACAC-TGAATTCCCATGGGCA-TGCTGTTTGCTCAGATT--TGAA
gi|11 : CTGTCCTCATAGACAGATCACATTCGTGACACTCTCTCCATTA--TATG--GTTTTGCCATATTTCTGTACAGCT-ACCAACCC-TTAATTCAGGTTGAAATG--TGCAAGATCACAC-TAAATTCATATGGGCA-TGCTTATTGCTTAGATT-GTGA
gi|12 : CTGTCCTCTTATATA--TCACATTTGTGACACTCTC--CTTCA--TATG--GTTTTGCCATATAACTGTATTGCT-ACCAACCC-TTAATACAGGTTGAAAGAACTGCAAGTTCACACTTGAATTCACATGAACA-TGATTATTGCTCAAATT-
gi|13 : CTGTCCTCATAGACGTATAACATTTGTAACACTCTCTCCTTGA--TATG--GTTT-GTCATATTTTTGTAGAGCT-ACCAATCC-TTAATTCAGGTTGAAATAACTGCAATATCACAC-TG
gi|14 : TATTTTTATAAAATTTATTAACCT-TCAATT-AAGTTGGAAAAACTTCAAAGCCACAT-AGAATTGCCGTGGATA-TGCTTATCGCTCCCACT-GTG
gi|15 : CT-ACCAACCC-TTAATTCAGGTTGAAAAATCTGTAAGATCACAC--GAATTCCCATTGACATTGCTTATTGCTCAGCTT-ATGAtat
gi|16 : TCA--TATA--GTTTTGTCATATTTCTGTAGAGCT-ACCAACC
gi|2 : ctCTGTCCTCATAGATAGATCCCACTTGTGACACTCTCTCCATCA--TGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAATATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|3 : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCATCA--TGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|4 : CTGTCCTCATAGACAGATCCTATTTGTGACACTCTTTCCGTCA--TGTGTGGTTTTGCCATATTTCTGTAGAGCT-ACCAATAC-TTAATTCAGGTTTAAGTATCTGCAAGATCACAC-TGAATTCCAGTGGGCA-TGCAAATTGCTCAGATT-GAGA
gi|5 : GTCCTCATAGACAGATCCCATTTGTGACA--CTCTCCATCATGTGTG--GTTTTGCCATATTTCTGTAGAGCT-ATCAATCC-TTAATTCAGGTTGAAATATCTGCAAAATTACAC-TGAATTCCAATGGGCA-TGCTTATTACTCAGATT-GTGAA
gi|6 : caTGTCCTTATACACATATCACATGTGTGACACTCTCCTCTTCA--TATG--GTTTTGTCATATTTCTGTAGAGCC-ACCAACCC-TTAATTCAAGTTGAAATATCTGCAAGATCACAC-TGAAGTCCCATAGGCA-TGCTTATTGCTCAGATT-GTGAA
gi|7 : tCTGTCTTCATAGACAGATCATATTTGTGACACTCTCTCCATCA--TATG--GTTTTGCCATATTTCTGTAGAGCT-ACTAACCC-TTAATTCAAATTGAAATATCTGCAAGATCACAC-TGAATTTCCATGGTCA-TGCTTATTGCTCAGATTAGTGA
gi|8 : CTGTCCTCA--GACAGATCCCATTTGTGACACTCTCTCCATCA--TGTGTGGTTTTGCCATATTTCTGTAGAACT-ACCAACCC-TTAATTCAGGTTGAAGTATCTGCAAGATCACAC-TGAATTCCAATGGACA-TGCTTACTGCTCAGATT-GTGAA
gi|9 : TGTCCTCATAGACAGATCACATTTGTGACACTTTCTCCATCA--TATG--GTTTTGCCATATTTCTGTAGAGCT-ACCAACCT-TTAATTCAGGTTGAAATATCTGCAAGATCACGC-TGAATTCCCATGGGCA-TGCTTATTGCTCAGATT-GTGAA