lowQualScore : 11111111111111111 11111111111111 222222222222222222222222222222222222222222222222 1111111111 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 4 222 2 55555 222 1 55 11111 222222222 00000000000000000 1 2222 1 66666666666666666666666666 555555555555 1 22222 55 1 444444444 11 1 1 2 1 22222 333 2222222222222222 1111 222 66666666666666 333333333333333 1 1 22222222 1 22 888888888888888888888888888888888888888888888888 8888888888888 11 4 22 22 77777777777 1 0000000000 2 222222222222222222222222222222222222222222222222222222222222 22 11 1 11 111 4444444444444444444444444444444444444444444444444444444 2222
lowQualScore : 5 6 1 222 7 6 0 555 6 33333 6 000 6 0 2 5 3 33 7 666 55 6 1 4 0 3 5 55555 7 3 222222222 1 44444444444444444 0 1 5 6 2222 3 0 1 1 8 6 3 33333333333333333333333333 1 111111111111 0 8 1 1 8 6 00000 55 0 1 0 222222222 99 5 5 2 0 4 5 9 6 3 44444 33 7 111 6666666666666666 6 0 8 0 1 7 8 4 3333 6 444 33333333333333 666 6 33 000000000000000 7 6 7 1 7 88888888 3 5 6 7 11 777777777777777777777777777777777777777777777777 2 5555555555555 77 0 3 77 4 3 66 2 77 3 66666666666 6 7 1111111111 1 4 666666666666666666666666666666666666666666666666666666666666 4 33 33 0 00 8 999 5 2222222222222222222222222222222222222222222222222222222 6 1111
lowQualScore : . . . ... . . . ... . ..... . ... . . . . . .. . ... .. . . . . . . ..... . . ......... . ................. . . . . .... . . . . . . . .......................... . ............ . . . . . . ..... .. . . . ......... .. . . . . . . . . . ..... .. . ... ................ . . . . . . . . .... . ... .............. ... . .. ............... . . . . . ........ . . . . .. ................................................ . ............. .. . . .. . . .. . .. . ........... . . .......... . . ............................................................ . .. .. . .. . ... . ....................................................... . ....
lowQualScore : 0 7 0 777 3 0 0 000 7 33333 0 000 0 5 5 0 2 55 3 444 00 6 7 7 9 9 7 66666 3 9 999999999 7 44444444444444444 9 6 0 0 6666 0 6 4 0 2 2 0 00000000000000000000000000 4 222222222222 6 0 8 4 0 7 00000 00 6 4 6 222222222 22 4 0 8 0 0 3 8 7 2 55555 55 8 000 4444444444444444 0 8 0 8 8 8 0 8 2222 0 000 88888888888888 444 0 88 333333333333333 3 7 0 0 0 33333333 7 0 0 3 77 777777777777777777777777777777777777777777777777 5 0000000000000 55 0 0 55 0 0 55 5 55 7 77777777777 0 0 0000000000 0 7 222222222222222222222222222222222222222222222222222222222222 0 55 88 8 22 0 000 6 0000000000000000000000000000000000000000000000000000000 7 2222
consensus : TGGACGCTGCCCGCGCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACATAA--TCTTTAAGACCGCGCATTTAATGCAAAGACCGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGNCTA-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCNGCGACCAAGNTCGACCAGATG-TT-TGGTCGGGGGTCTACACGACGGAAAGGGACC---------CCTGCCAAACCTC------TAG-GGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTCG-CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CT-----------CGACCTCTACCCGACAT------N-----TACCCGACCTATACCCGA-TTATGCACNATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAAATATGTG-A-------CTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCG-CTACAAGATGTAT-TCAGACCGCTTCCAGACCGTCTGGCTTTCTCGAGCGCTACACGGAAAAAAATCCGTGTCGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATCATTTCACGACCGCATGNTCGAGTTTGATCGAGGTACTCAGATCGG---CGGTGAGAACGTACCATTAC-TACA-ACGTA-ACATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCGAACCATAACTATACTATATATTGCTCTGACCGACCTG-AC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACGA-ATTGTATACTAAATTTTACCCT-------------------GTGTAAATGTTTTAACAAGAGTCCACCAAGCGGGGCATTATACGCCCGAAGGTTTGGATTGAATGAGGGGGGGGGGGGGGGGANATTGAGATGNGGGTGTGGAGAAAAAAGGA-ANTTTTCGGTTNCAAANCAGGNNGNGAATTTTTTTTNGGGGGG--TGG-GG--TGGGGATTGTGGTTAGGGGG---G--G-TTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGG--GGTATTGT--TT--TGGGGTGAGGGGATTT--------------------CGGTG---GNGGGGGGGTT--AAGGGNGGTGGGGGGT-TTAGGCAGAGGTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTAC-------C----TA----------TA---------TC----AAA--TCAAT----ACCTTCAACAGTTTT----GTTGT
Reference ( gi|2 ) : TGGACGCTGCACGCCCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGTATATAATACATAATTTCTTTAAGACCGTGCATTTAACG-AAAGACCATACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTT-GGAGGGGAAACCTGCAAGGGCTAAAAAGGAACGTTACGACTCCAGGCTATCGAAAAGGACCATGTCATATGTCAAACTGGCTA-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCCTCCGACCGGCCAAATTCGGCGACCAAGATTGATCAGATG-TT-AGTTCGGAGGTCTACACGACGGAAAGGAACC---------CCTGTC------C------T---GGACTATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACGTCCTC--CTTCTACTCGACCTTTTCACGACCTTCCAGACCCTTTCCCGATGTCTACCCGATAAACACGACCAGCCTGACCTTTT-------------CT-----------CGACCTCTACCCGACAT------G-----TACCCGACCTATACCCGA-TCATGTACCATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTG--CAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCTGCAGGCATTATATAGACAGATTGATAAAAATATGTG-C-------CTAGATGTCTTCTTGATAAAATAGCCCTTGCACACTAGTATACATGAGTTTACAAGATCG-CTACAAGATGTATACCAGACCGCTTCCAGACCATCTGGC-T-CTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCAACCGCTACCGAC-CAAGGTAAAC-CGCTGCAGACCGGGCAGGACCCCCACCCCCTGCAGACTGGGTGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGG---CGGTGAAAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTTAAGTGTCCAAATCATAACTATACTTTATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCATTGGGCACAAGTAGCTTTAAGTTTACATAAATGTGATTGTTTTACAT-ATTGTATACTAAATTTTACCC--------------------G---------------------CCA---AGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGATGGGGGTGTGGAGAAAAAAAAATAATTT--GGTTTCAAAACAGGAGGGGA--TTTTTTTGGGGGGGTATGGTGG--TGGGAATTGTGGTAAGGGAGTCTGTTGTTTTTTTTTCATCGTCTTGTTGAAAAACAATTGAGGGGAGG--GATATTGT--TT-GTGGGGTGAGGGGATTT--------------------CGGTG---GTGGGGATGTT--AAGGGTGGTGATGGGT-TTAGGCAGAGGTGACCAGTGTTGCACTCTGCACATTGACTCATCGCCACCTAC-------C----TA----------T----------TA----AAA--TAAAA----ACCTTCAACAGTTTT----GTTGTT
gi|1 : TGGACGCTGCCCGCGCTCCATTTGCGCTCTAGTGATACTATAAGTAAAGCATATACTACATTATATCTTTAAGACTGTGCATTTAATGCAAAGACCGTACATGGATATATCTGAAAGGTTTATATACCTTACTTTCATTGCATTTTTGGAAGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTA-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCTAGATTTACCAGATG-TTTAGT-CGGGGGTCTACAAGTCGGAAAGGGACC---------TTTGCC-----------------AAAC-ATACTATATCAACTTAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACACACATCGTC--CTTCTACTCGACCTCTTCACGGCCTTTCTAAGCCATTCCCGATGTCTACTCGATTAACACGACAAATCCGACCTTTT-------------CT-----------CGACCTCTACCCGACAT------C-----TACCCGACCTATACCCGA-TTATGTACTACCG-GG-CACGACAGCAGCAGACTACGTATAAAACTGTAGTACTGTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCTTGGAAGTTGAGCAGCAGGCATTATATAGACAGATTGATAAAAATATGCG-A-------CTACATGTCTTCCGGATAAACTAAACCTTGTACACGAGTATACATTAGTTTATCAGACCG-C----------------------TTCCAGACCGTCTGGCTT-CTCGAGC----------------TCCGTGTAAAAACCCCGACCCC--CCCACACA---CACACACACTGCA-----------------ACCCCCTGCCGATCGAAGGAGATCATTTCACGACCGCATGATCGAGTTTGATCGAGGTACTCAGATCGG---CGGTGAGAACGTACCATTACCTACA-----------TTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTTCAAACCATAACTATAATATATATTGCTCTGACTGACCTGTAC-ATACGAAATTAATGCGTAACACCAGTGGGCAGAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTATGTGATTGTATACTAAATTTTACCCT-------------------GTGTAAATGTTTTAACAAGAGTCCACCAAGCGAGGCATTATACGCCCGAAAGTTTGAATTGAATGAGGGGAAA---------ACATTGAGAT-GGGGTGTGGAGAAAAAAAGA-AATTTTCGGTTTCAAAACAGGAGGGGAATTTTTTTTAGGGTGGT-TGG-GG--TGGGGATTGTGGTTAGGAGG--TG-GGGTTTCTTTACATCATCATGATGAAAAACTATTGAAGGGAGG--GAC-TTTT--TT-TTGGGGTGGGGGGATTT--------------------CGGTG---GTGGGGGGGTT--AAGGGGGGTGGGGGGT-TTTGGCAGAGGTGACCAGCGTTGTACTCTGCACATTGACTAATCGCCAACTTC-------C----TATATTCCAAGTT----------TC----AAA--TCAAT----ACCTTCAACAGTTTT----
gi|3 : caagtttgagggctgacaatgttTGGACGCTGCCCGCACGCCGTGGGTACTCTAGTGATACTATAAATAAAGCATATAATACATA-------T--GACCGCGCATTTAATGCAAAGATTGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTTAATTTT-TGAGGGGGAAACTGCAAGGGCTGAAAAGGAACGTTACGACTCCCTTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTA-GTCCTCACCG---CCGATATGAGTACCTCGGTCTCCC--CGACCGGCCAAATTCAACAACCAAAATTGACCAGATG-TT-TGGTTGGGGGTCTACACTACGGAAAGGGACC---------CCTGCCAAACCTC------TAGTGGACCATACTATATCAACTCAAGACCATTCCAGACCACTTCAAGAC-TACTTGCCGACACACATCCTC--TTTCTTCTCGACATTTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCAATTAACACGACCAGCCCGGCCTTTT-------------CT-----------CGACCTCTACCCGACAT------C-----TTCCCGACCTATACTCAA-TCATGTA----CG-GG-CACAATAACAGCAGATTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACACCATGGACGTTCAGCTGCTGGCATTATATAGACAGATTGATAAAACTATGTG-A-------CTAGATGTCTTCCGGATAAATTAGACCTTGTTCACGAGTAAACATGAGTTTACCAGAGCG-CTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTT-CTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGAAGACCGGACGGGACCCCCACCCCCTGCATACCAAGAGAGATTATTTCACGACCGCATGGTCGAGTTTGATCGAGGTACTCGGATCGG---CGGTGAGAACGTACCATTACATACATACGTATATATATTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAATCATAACTATACTATATATTGCTCTGACCGACCTG-ACTATACAAAATAAATGCGTAGCTCCAGTGGGCACAAGTAGCTTCAAGTTTAC----ATGTGATTGTTTTACAA-ATTGTGTACTAAATTTTACCC--------------------taagttatgctgtggacataaaacgtaacagacagtttatc
gi|4 : caagtttgagggctgacaactttTGGACGCTGCCCGCCCGCCGTGGGTACCCTAGTGATAATATAAGTAAAGTATATAATACATAAATTCTTTAAGACCGTGCATTTAATGCAAAGAC-----------ATATTTGAAAGGTGTGTGTACCTTACTTTCATTGCATTTTTGGAGAGG-------------CTGAAAAGGAACGTTATGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTA-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACTGGTCAAATTCGGCGACCAAGATTGACCAGATG-TT-TGGTCGGGGGTCTACACGACGGAAAGGGACC---------CACGCCAAACCTC------TAGTGGACCATACTATATCAACTCAAGAGCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTAACGACCTTCCAGACCTCTTCCCGATGTCTTACCGATTAACTAGACCAGCCTGACCGTTG-------------CT-----------CGATCTCTACCCGACATCTACCCGACATCTACCCGACCTATACCCGA-TCATGGACTATCG-GG-CACGATAGCAGCAGACAAAGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACAATCGAAGAAGCAACATCATGGAAGTTGA---GCAG-----ATATAGAAAGATTGATAAAAATATGTG-A-------CTAGATGTCTTTCGGATAAACTAGACCTTGTACACGAGTATACACGAGTTTACCAGAGCG-CTACAAGATGTATATCACACCGATTCCAGACCGTCTGGCTT-CTCGAGCGCTACACGGAAAAAAATCTGTGTTGAAAGCCTGACTGCTACCGAC-CAAGGGAGAC-CGTTGCAGACCGGGCGGGACGCCCCCCCCCagt
gi|5 : AGGTTCACGT-ATATTTGAAAT--GTTACGTTCTCACTG---CCGATATGAGTACCTCGATCacaca
gi|3 : ggcagtatatagaccgattgataaaaatatgtgtctagatgtctttcggataaactagaccttgcatacgagtacacatgagttaaccagaacgctacaagatgtattcaagaccgtctggcttctcgagcgctacacggaaaaaatccgtgttgaaaccccgacccttattgaccaaggtagactgctgcagaccgtgtgggaccctaacccaatgcagaccgatggagattatttcacTATGT--AA-TGG-TACGTTCTCACCG---CCGATCCGAGTACCTCGATCggcctgtaaagtgtccgaaccatagctatactatatattgctctaaccgaaattaaagcgtaactccagtgggcacaagtagcttcaagtttacataaatgtgattatttttcaaactgtatactaaattttaccctgtgttttaactagagctccgccaagcggggcattataaatccaaaggtttagattgaatgaggggggggggggggggaaatgagatgtaggtatggagaaaaaagaaactttggttataaaccaggttgtgattttttttggggggaggggattgtggttagtgggtgaggttactttacatcgtcttgttgaagaacaattgagggggtgttaatggtggttatgggtttaggcagaagtgaccagcgttgcactctgcacattgactcatcgccacctacctatattccaagtttcaaatcaataccttcaacagcttttacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|10 : caagtttgagggctgacaacttttggacgctgcccgcacgccgtgggtactctagtgatactataaataaagcatataatacatatgaccgcgcatttaatgcaaagattgcacatggatatatttgaaaggtttatgtaccttactttcatttaatttttgagggggaaactgcaagggctgaaaaggaacgttacgactcccttcgaccgaaatggaccatgtcatatgtcaaactgcctagtcctcaccgccgatatgagtacctcggtctccccgaccggccaaattcaacaaccaaaattgaccagatgtttggttgggggtctacactacggaaagggacccctgccaaacctctagtggaccatactatatcaactcaagaccattccagaccacttcaagactacttgccgacacacatcctctttcttctcgacattttcacgaccttccagaccccttcccgatgtctacccaattaacacgaccagcccggccttttctcgacctctacccgacatcttcccgacctatactcaatcatgtacgggcacaataacagcagattaggtataaaactgtagtattttgttcggtatttagttgaccaaacactatcgaagaagcaacaccatggacgttcagctgctggcattatatagacagattgataaaactatgtgactagatgtcttccggataaattagaccttgttcacgagtaaacatgagtttaccagagcgctacaagatgtatatcagaccgcttccagaccgtctggcttctcgagcgctacacggaaaaaaatccgtgttgaaaccccgaccgctaccgaccaaggcagaccgctgaagaccggacgggacccccaccccctgcataccaagagagattatttcacgaccgcatggtcgagtttTGGCCC-GTTCTCACCG---CCGAGCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCTGC----------GACCA--------AGCTCG------------ACGGAAAAGGACC---------CCTGCCAAACCTC------TAGCGGACCATACTATATCAACTCAAGACCCTTCCGGACTACTTCAAAAC-CACATCCCGTCACACATCcatacgtatatatatttacttcactgacggtctcggtgaaccctggcctgtaaagtgtccaaatcataactatactatatattgctctgaccgacctgactatacaaaataaatgcgtagctccagtgggcacaagtagcttcaagtttacatgtgattgttttacaaattgtgtactaaattttacccagt
gi|1 : ccgtttatataa-GTTCTCACCG---CCGATCTGAGTACCTCGATC
gi|6 : caagtttgagggctgacaatgtttggacgctgcccgcgctccatttgcgctctagtgatactataagtaaagcatatactacattatatctttaagactgtgcatttaatgcaaagaccgtacatggatatatctgaaaggtttatataccttactttcattgcatttttggaaggggatgcaagggctgaaaaggaacgttacgactccagtcgaccgaaatggaccatgtcatatgtcaaactgcctagttctcaccgccgatctgagtacctcgatctccccgaccggccaaattcggcgacctagatttaccagatgtttagtcgggggtctacaagtcggaaagggacctttgccaaacatactatatcaacttaagacccttccagaccacttcaagacaacttgccgacacacatcgtccttctactcgacctcttcacggcctttctaagccattcccgatgtctactcgattaacacgacaaatccgaccttttctcgacctctacccgacatctacccgacctatacccgattatgtactaccgggcacgacagcagcagactacgtataaaactgtagtactgtattttgttcggtatttagttgaccaaacactatcgaagaagcaacatcttggaagttgagcagcaggcattatatagacagattgataaaaatatgcgactacatgtcttccggataaactaaaccttgtacacgagtatacattagtttatcagaccgcttccagaccgtctggcttctcgagctccgtgtaaaaaccccgacccccccacacacacacacactgcaaccccctgccgatcgaaggagatcatttcacgaccgcatgatcgagttt-GTTCTCACCGACGCCGACCTGAGTACCTTGATTTCCC--CGACCGGCCAAATTCCGCAACAAAGCTCGACCAAATGATT-GGT-CGGGGATCTACACGACGGAAGGGGACCTCTGCCAGACCTGTA------G------T---GGACCATACTAAATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CCCTTGCCGACACACATCC-CGACTTCTACTCGACCTCTGCTCGACCTTCCAGACCCCTTCTCGATGTCTACCCGATCAACACGACCAGCCCGACCTTTTTTCTTGACTTTTACT-----------CGACCTCTACCCGACTT------T-----TACCCGACTTCCACCCGA-ATATGCACGATCG-AATCACGAGAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTTAGTATTCAGCTGACCAAAAACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGAgtaccattacctacattttacttcactgacggtctcggtgaaccctggcctgtaaagtgttcaaaccataactataatatatattgctctgactgacctgtacatacgaaattaatgcgtaacaccagtgggcagaagtagcttcaagtttacataaatgtgattgttttatgtgattgtatactaaattttaccctgtgtaaatgttttaacaagagtccaccaagcgaggcattatacgcccgaaagtttgaattgaatgaggggaaaacattgagatggggtgtggagaaaaaaagaaattttcggtttcaaaacaggaggggaattttttttagggtggttggggtggggattgtggttaggaggtggggtttctttacatcatcatgatgaaaaactattgaagggagggacttttttttggggtggggggatttcggtggtgggggggttaaggggggtggggggttttggcagaggtgaccagcgttgtactctgcacattgactaatcgccaacttcctatattccaagtttcaaatcaataccttcaacagtttttaagttatgctgtggacataaaacgtaacagacagtttatc
gi|7 : -GTTCTCACCG---CCGATCTGAGTACTTCGATTTCCC--CGACCGGCCAAATCCCGCGACCAAGCTCGATCAGGTG-TT-TGGTCTGGGATCTACACGACGGACCTGA------------CCTGTA------G------T---GGACCATACTAGATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACAAACATCC-CGGCTTCTACTCGACCTCTGCTCGATCTTCCCTAGCCCTTCCCGATGTCTACCCGATCAACATGACCAGCCCGACCTTTT-------------CTAGACTTATATCCGACCTCCACCCGACTT------A-----TACCCGACCTCTACCCGACTTATGCACGATCGCAG-CACGA
gi|8 : -GTTCTCACCG---CCGATCTGAGTACCTCGATC
gi|12 : cggattggtaaaactatgtgactatgtgactagatgtcttcccgatgaactagatcttgtacacgagtttaccagagcgctacaagatgtattttagaccgcttccatctggcttctcgagggtgtcgaaaccccgaccgctaccgaccaaggtagaccgctgctgaccgggcaggacacccctgcagaccgcgggagatcatttcacgacgcacgatcgagttt-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC-------------------CGACCAAGCTCGACCAGGTG-TT-TGGTCGGGGGTCTCTACGACGGAAAGGGACA---------TCTGCCAGA---CCTGCAGT---GGACCATACTAGATCGACTCAAGACCCATCCAGACCACTTCAAGAC-g
gi|9 : cctCGACTCAAGACCCATCCAGACCACTTCAAGACACACac
gi|9 : G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----ATAGTTTGTTCAGTATTCAGTTAACCAAAGACTATCGAAGAAGCAAAGTCAAAGACGTTCAGCAGCAGGTATTGTATAGGCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgatagcagcagactaggtataaaactgtaatagtttgttcagtattcagttaaccaaagactatcgaagaagcaaagtcaaagacgttcagcagcaggtattgtataggc
gi|5 : cgactcaagacccatccagaccacttcaagacacacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGCAGTATATAGACCGATTGATAAAAATATGTG-T-------CTAGATGTCTTTCGGATAAACTAGACCTTGCATACGAGTACACATGAGTTAACCAGAACG-CTACAAGATGTAT-----------TCAAGACCGTCTGGC-TTCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCGACCCTTATTGAC-CAAGGTAGAC-TGCTGCAGACCGTGTGGGACCCTAACCCAATGCAGACCGATGGAGATTATTTCACGA------------------TCGAGGTACTCATATCGG---CAGTGAGA------------------ACGTA-ACATTTCAAATATAC-----------GTGAACC-TGGCCTGTAAAGTGTCCGAACCATAGCTATACTATATATTGCTCTAACCGA--------------AATTAAAGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTATTTTTCAA-ACTGTATACTAAATTTTACCCTGTGTTTTAACTAGAGCTCCG---------------------CCA---AGCGGGGCATTATAAATCCAAAGGTTTAGATTGAATGAGGGGGGGGGGGGGGGGAAA-TGAGATGTAGGTATGGAGAAAAAAGAA-ACTTT--GGTTATAAACCAGGTTGTGA--TTTTTTTTGGGGGG-A---------GGGGATTGTGGTTAGTGGGTGAG--GTTACTTTA-CATCGTCTTGTTGAAGAACAATTGAGGGGGTGTTAATGGTGG--TT-ATGGGTTTAGG
gi|8 : CGGATTGGTAAAACTATGTGACTATGTGACTAGATGTCTTCCCGATGAACTAGATCTTGTACAC----------GAGTTTACCAGAGCG-CTACAAGATGTATTTTAGACCGCTTCCA-----TCTGGC-TTCTCGAG---------G----------GTGTCGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCTGACCGGGCAGGA----CA-CCCCTGCAGACCGCGGGAGATCATTTCACGACGCACGATCGAGT-TTGATCGAGGTACTCAGATCGG---CGGTGAGAACGcagaagtgaccagcgttgcactctgcacattgactcatcgccacctacctatattccaagtttcaaatcaataccttcaacagcttttacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|12 : TACTAGATCGACT-CAAGACCCAT-CCAGACCACTTCAAGAC
gi|1 : cctgttctcaccgccgatctgagtacctcgatctccccgaccaagctcgaccaggtgtttggtcgggggtctctacgacggaaagggacatctgccagacctgcagtggaccaGATCGAGGTACTCAGATCGG---CGGTGAGAACac
gi|3 : caagtttgagggctgacaatgtttggacgctgcccgcgctccatttgcgctctagtgatactataagtaaagcatatactacattatatctttaagactgtgcatttaatgcaaagaccgtacatggatatatctgaaaggtttatataccttactttcattgcatttttggaaggggatgcaagggctgaaaaggaacgttacgactccagtcgaccgaaatggaccatgtcatatgtcaaactgcctaGACCGAGGTACTCATATCGG---CGGTGAGGACtccccgaccggccaaattcggcgacctagatttaccagatgtttagtcgggggtctacaagtcggaaagggacctttgccaaacatactatatcaacttaagacccttccagaccacttcaagacaacttgccgacacacatcgtccttctactcgacctcttcacggcctttctaagccattcccgatgtctactcgattaacacgacaaatccgaccttttctcgacctctacccgacatctacccgacctatacccgattatgtactaccgggcacgacagcagcagactacgtataaaactgtagtactgtattttgttcggtatttagttgaccaaacactatcgaagaagcaacatcttggaagttgagcagcaggcattatatagacagattgataaaaatatgcgactacatgtcttccggataaactaaaccttgtacacgagtatacattagtttatcagaccgcttccagaccgtctggcttctcgagctccgtgtaaaaaccccgacccccccacacacacacacactgcaaccccctgccgatcgaaggagatcatttcacgaccgcatgatcgagtttgatcgaggtactcagatcggcggtgagaacgtaccattacctacattttacttcactgacggtctcggtgaaccctggcctgtaaagtgttcaaaccataactataatatatattgctctgactgacctgtacatacgaaattaatgcgtaacaccagtgggcagaagtagcttcaagtttacataaatgtgattgttttatgtgattgtatactaaattttaccctgtgtaaatgttttaacaagagtccaccaagcgaggcattatacgcccgaaagtttgaattgaatgaggggaaaacattgagatggggtgtggagaaaaaaagaaattttcggtttcaaaacaggaggggaattttttttagggtggttggggtggggattgtggttaggaggtggggtttctttacatcatcatgatgaaaaactattgaagggagggacttttttttggggtggggggatttcggtggtgggggggttaaggggggtggggggttttggcagaggtgaccagcgttgtactctgcacattgactaatcgccaacttcctatattccaagtttcaaatcaataccttcaacagtttttaagttatgctgtggacataaaacgtaacagacagtttatc
gi|4 : caagtttgagggctgacaacttttggacgctgcccgcacgccgtgggtactctagtgatactataaataaagcatataatacatatgaccgcgcatttaatgcaaagattgcacatggatatatttgaaaggtttatgtaccttactttcatttaatttttgagggggaaactgcaagggctgaaaaggaacgttacgactcccttcgaccgaaatggaccatgtcatatgtcaaactgcctaGATCGAGGTACTCAGATCGG---CGGTGAGAACtccccgaccggccaaattcaacaaccaaaattgaccagatgtttggttgggggtctacactacggaaagggacccctgccaaacctctagtggaccatactatatcaactcaagaccattccagaccacttcaagactacttgccgacacacatcctctttcttctcgacattttcacgaccttccagaccccttcccgatgtctacccaattaacacgaccagcccggccttttctcgacctctacccgacatcttcccgacctatactcaatcatgtacgggcacaataacagcagattaggtataaaactgtagtattttgttcggtatttagttgaccaaacactatcgaagaagcaacaccatggacgttcagctgctggcattatatagacagattgataaaactatgtgactagatgtcttccggataaattagaccttgttcacgagtaaacatgagtttaccagagcgctacaagatgtatatcagaccgcttccagaccgtctggcttctcgagcgctacacggaaaaaaatccgtgttgaaaccccgaccgctaccgaccaaggcagaccgctgaagaccggacgggacccccaccccctgcataccaagagagattatttcacgaccgcatggtcgagtttgatcgaggtactcggatcggcggtgagaacgtaccattacatacatacgtatatatatttacttcactgacggtctcggtgaaccctggcctgtaaagtgtccaaatcataactatactatatattgctctgaccgacctgactatacaaaataaatgcgtagctccagtgggcacaagtagcttcaagtttacatgtgattgttttacaaattgtgtactaaattttacccagt
gi|12 : tggacgctgcccgcccgccgtgggtaccctagtgataatataagtaaagtatataatacataaattctttaagaccgtgcatttaatgcaaagacatatttgaaaggtgtgtgtaccttactttcattgcatttttggagaggctgaaaaggaacgttatgactccagtcgaccgaaatggaccatgtcatatgtcaaactgcctaGATCGAGGTACTCAGATCGG---CGGTGAGAACtccccgactggtcaaattcggcgaccaagattgaccagatgtttggtcgggggtctacacgacggaaagggacccacgccaaacctctagtggaccatactatatcaactcaagagccttccagaccacttcaagaccacttgccgacacacatcctccttctactcgacctcttaacgaccttccagacctcttcccgatgtcttaccgattaactagaccagcctgaccgttgctcgatctctacccgacatctacccgacatctacccgacctatacccgatcatggactatcgggcacgatagcagcagacaaagtataaaactgtagtattttgttcggtatttagttgaccaaacacaatcgaagaagcaacatcatggaagttgagcagatatagaaagattgataaaaatatgtgactagatgtctttcggataaactagaccttgtacacgagtatacacgagtttaccagagcgctacaagatgtatatcacaccgattccagaccgtctggcttctcgagcgctacacggaaaaaaatctgtgttgaaagcctgactgctaccgaccaagggagaccgttgcagaccgggcgggacgcccccccccacaca
gi|10 : cctGATCGAGGTACTCAGCTCGG---CGGTGAGAACGGGCCATTA--TATAAACGtccccgaccaagctcgaccaggtgtttggtcgggggtctctacgacggaaagggacatctgccagacctgcagtggaccatactagatcgactcaagacccatccagaccacttcaagacac
gi|6 : cATCAAGGTACTCAGGTCGGCGTCGGTGAGAACtccccgaccggccaaattctgcgaccaagctcgacggaaaaggacccctgccaaacctctagcggaccatactatatcaactcaagacccttccggactacttcaaaaccacatcccgtcacacatc
gi|7 : ATCGAAGTACTCAGATCGG---CGGTGAGAACttccccgaccggccaaattccgcaacaaagctcgaccaaatgattggtcggggatctacacgacggaaggggacctctgccagacctgtagtggaccatactaaatcaactcaagacccttccagaccacttcaagaccccttgccgacacacatcccgacttctactcgacctctgctcgaccttccagaccccttctcgatgtctacccgatcaacacgaccagcccgaccttttttcttgacttttactcgacctctacccgacttttacccgacttccacccgaatatgcacgatcgaatcacgagagcagcagactaggtataaaactgtagtattttgtttagtattcagctgaccaaaaactatcgaagaagcaacatcatggaagttcagcagcaggcattatataga
gi|11 : TTTTTTGGGGGG---TGGCGGGTTGGGGATTGTGATTAGGGG---------TTTCTTTACATCGTCTTGTTGAAAAACAAATGAGGA-------------------------TGGGGGGATTT--------------------CGGTGCGCGAGGGGGGGTT--AAGGG-GGTGCGGGGT-CT-GGCAGAGGTGACCAGCGTTGCACTCTGCACATTGACTCATCGCttccccgaccggccaaatcccgcgaccaagctcgatcaggtgtttggtctgggatctacacgacggacctgacctgtagtggaccatactagatcaactcaagacccttccagaccacttcaagacaacttgccgacaaacatcccggcttctactcgacctctgctcgatcttccctagcccttcccgatgtctacccgatcaacatgaccagcccgaccttttctagacttatatccgacctccacccgacttatacccgacctctacccgacttatgcacgatcgcagcacga
gi|5 : gtgTTGGGGGGAGG--GG-ATTGTGGTTAGTGGG-TGAGGTTACTTTACATCGTCTTGTTGAAGAACAATT---GAGGGGGTGTT--AATGGTGGTTATGGGT-TTAGGCAGAAGTGACCAGCGTTGCACTCTGCACATTGACTCATCGCCACCTAC-------C----TA----------TATTCCAAGTTTC----AAA--TCAAT----ACCTTCAACAGCTTT----
gi|14 : ggcagtatatagaccgattgataaaaatatgtgtctagatgtctttcggataaactagaccttgcatacgagtacacatgagttaaccagaacgctacaagatgtattcaagaccgtctggcttctcgagcgctacacggaaaaaatccgtgttgaaaccccgacccttattgaccaaggtagactgctgcagaccgtgtgggaccctaacccaatgcagaccgatggagattatttcacgatcgaggtactcatatcggcagtgagaacgtaacatttcaaatatacgtgaacctggcctgtaaagtgtccgaaccatagctatactatatattgctctaaccgaaattaaagcgtaactccagtgggcacaagtagcttcaagtttacataaatgtgattatttttcaaactgtatactaaattttaccctgtgttttaactagagctccgccaagcggggcattataaatccaaaggtttagattgaatgaggggggggggggggggaaatgagatgtaggtatggagaaaaaagaaactttggttataaaccaggttgtgattttttGAGG--GGTATTG--------GGGGTAA----AT------------------------------GTGGGG--GTTGGAGGGGAGGGGGTGAGTATT--------GTGGCT--TGTTGAACTCTATATATCGTCTCATCACCACCTACATATAT-CCTAATA----------T----------TC----AAG--TCAAT----ACCTTGAATA-TTTTATGAGTTGTtacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|15 : tGGTGATGGGGGGA-TTAA-CAG-GATGAACAGCGTTGCACTCTGCACATAGACTCATCGCCACCTAC-------C----TA----------TATTCCAAGTTTC----AAA--TCAAT----ACCTT---CAGTTTT----gct
gi|17 : tcCAGTGTTGCACTCTGCACATTGACTCATCGTCACCTAC-------C----TA----------TA---------TATTCCAAAGTTCAAATCATGCCTTCAACAGTTTtaaattatgctgtggacacataaagtgacagacagtt
gi|16 : TGTGGTACTCTACACATCGTCTCATCACCACCTACATATATTC----TAAGT-------T----------TC----AAG--TCAAT----ACCTTGAATAGTTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AGGGGGGGGGGGGGCTTGCTAATGTAATCAATTTTACTGCATTTGTTATCTAATCAAATTCCAGTATTTCCAGGTCTTCTAAATTAAAACTTTCTACAACCAAGTTTATTGAGCTAACCACAAAACAGTCGTCAACAATTCATCAA
Unaligned ( gi|18 ): AAGTTTGAGGACTGACAACTTTTGGACGCTGCCCGC
Alignments
lowQualScore : 11111111111
lowQualScore : 333333333 111 33333 3 2 44444444444444444444444444 33333333333 11111 222222222 2 222 1111111 22222222222222 7777777777777777 2222 111 555555555555555555555 777777777 1 1 1 33 11 1 33333333 1 66666666666 333333333333333 66666666666666666666 111 2222 44444444444 1111
lowQualScore : 6 888888888 3 2 2 111 3 2 88888 1 888 66 2 0 2 1 0 00 2 0 0 0 4 6 0 99999999999999999999999999 1 11111111111 6 2 7 6 5 66666 333333333 1 1 0 6 2 666 2 3333333 4 6 2 6 55 1 77777777777777 2 5555555555555555 3 2 2 2 3333 0 3 333 9 555555555555555555555 6 0 666666666 11 1 6 4 11 3 1 00 1 1 22 1 44 1 0 33333333 0 00000000000 2 777777777777777 0 55555555555555555555 444 8 0 7 0 7 0 4444 0 3 11111111111 4 7777
lowQualScore : . ......... . . . ... . . ..... . ... .. . . . . . .. . . . . . . . .......................... . ........... . . . . . ..... ......... . . . . . ... . ....... . . . . .. . .............. . ................ . . . . .... . . ... . ..................... . . ......... .. . . . .. . . .. . . .. . .. . . ........ . ........... . ............... . .................... ... . . . . . . .... . . ........... . ....
lowQualScore : 5 888888888 2 0 5 000 2 5 55555 0 888 99 8 2 8 1 1 99 5 1 0 2 4 0 3 33333333333333333333333333 0 77777777777 7 2 5 7 7 77777 333333333 8 0 0 7 5 000 5 5555555 8 7 2 7 00 0 66666666666666 5 0000000000000000 2 5 0 5 2222 2 2 222 8 555555555555555555555 7 7 777777777 33 0 0 0 33 3 0 33 0 0 00 0 77 0 0 55555555 0 22222222222 5 222222222222222 8 00000000000000000000 000 8 8 5 1 3 7 3333 7 1 44444444444 3 0000
consensus : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGGAA-CTGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC-CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CT-----------CGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGA-TCATGTACNATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATC-AGACCGCTTCCAGACCGTCTGGC-TTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACC-TACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTGT-----TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGA---------GGGGGAAAAA-TGAGATG-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGGAATTTTTTTTGGGG-GGG--TGGC-GGT-GGGGATTGTGGTTAGGG---GGT-----GGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGAGGGGATTT--------------------CGGTG---GNGGGGGGGTTAAGGGTGGTGGGGGGTTTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACCTATATTCCAAGTT--TCAAATCAATACCTTCAACAGTTTT----GTTGT
Reference ( family-1843 ) : TGGACGCTGCCCGCGCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGCGCATTTAATGCAAAGACCGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGNCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCNGCGACCAAGNTCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAG-GGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTCGCTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CT-----------CGACCTCTACCCGACATNT-----------ACCCGACCTATACCCGA-TTATGCACNATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTAT-TC-AGACCGCTTCCAGACCGTCTGGCTTTCTCGAGCGCTACACGGAAAAAAATCCGTGTCGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATCATTTCACGACCGCATGNTCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTA-C-TACA-ACGTA-ACATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCGAACCATAACTATACTATATATTGCTCTGACCGACCTG-AC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTGTGTAAATGTTTTAACAAGAG-TCCACCAAGCGGGGCATTATACGCCCGAAGGTTTGGATTGAATGAGGGGGGGGGGGGGGGGANATTGAGATGNGGGTGTGGAGAAAAAAGGA-ANTTTTCGGTTNCAAANCAGGNNGNGAATTTTTTTTNGGG-GGG--TGG--GGT-GGGGATTGTGGTTAGGG---GG------GGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGAGGGGATTT--------------------CGGTG---GNGGGGGGGTTAAGGGNGGTGGGGGGTTTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACCTATA-----------TCAAATCAATACCTTCAACAGTTTT----GTTGT
gi|1 : TGGACGCTGCCCGCGCTCCATTTGCGCTCTAGTGATACTATAAGTAAAGCATATACTACATTATA--T--CTTTAAGACTGTGCATTTAATGCAAAGACCGTACATGGATATATCTGAAAGGTTTATATACCTTACTTTCATTGCATTTTTGGAAGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCTAGATTTACCAGATGTTTAGTCGGGGGTCTACAAGTCGGAAAGGGACCTTTGCCAAA------------CATACTATATCAACTTAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACACACATCGTC-CTTCTACTCGACCTCTTCACGGCCTTTCTAAGCCATTCCCGATGTCTACTCGATTAACACGACAAATCCGACCTTTT-------------CT-----------CGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGA-TTATGTACTACCG-GG-CACGACAGCAGCAGACTACGTATAAAACTGTAGTACTGTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCTTGGAAGTTGAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGCGACTACATGTCTTCCGGATAAACTAAACCTTGTACACGAGTATACATTAGTTTA----------------------TC-AGACCGCTTCCAGACCGTCTGGC-TTCTCGAGC----------------TCCGTGTAAAAACCCCGACCCC--CCCACACA---CACACACACTGCA-----------------ACCCCCTGCCGATCGAAGGAGATCATTTCACGACCGCATGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACC-TACA-----------TTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTTCAAACCATAACTATAATATATATTGCTCTGACTGACCTGTAC-ATACGAAATTAATGCGTAACACCAGTGGGCAGAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTATGTGATTGTATACTAAATTTTACCCTGTGTAAATGTTTTAACAAGAG-TCCACCAAGCGAGGCATTATACGCCCGAAAGTTTGAATTGAATGA---------GGGGAAAACATTGAGATG-GGGTGTGGAGAAAAAAAGA-AATTTTCGGTTTCAAAACAGGAGGGGAATTTTTTTTAGGGTGGT--TGG--GGT-GGGGATTGTGGTTAGGAGGTGG------GGTTTCTTTACATCATCATGATGAAAAACTATTGAAGGGAGGGACTTTTT--TT-TG-GGGTGGGGGGATTT--------------------CGGTG---GTGGGGGGGTTAAGGGGGGTGGGGGGTTTTGGCAGAG----GTGACCAGCGTTGTACTCTGCACATTGACTAATCGCCAACTTCCTATATTCCAAGTT--TCAAATCAATACCTTCAACAGTTTT----
gi|10 : caagtttgagggctgacaatgttTGGCCCGTTCTCACCG---CCGAGCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCTGC----------GACCAAG---------------CT---CGACGGAAAAGGACCCCTGCCAAACCTCTAGCGGACCATACTATATCAACTCAAGACCCTTCCGGACTACTTCAAAAC-CACATCCCGTCACACATCtaagttatgctgtggacataaaacgtaacagacagtttatc
gi|11 : ccgtttatataaTTTTTTGGG-GGG--TGGCGGGTTGGGGATTGTGATTAGGG---G---------TTTCTTTACATCGTCTTGTTGAAAAACAAATGAGGA-----------------------TGGGGGGATTT--------------------CGGTGCGCGAGGGGGGGTTAAGGG-GGTGCGGGGTCT-GGCAGAG----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGC
gi|12 : gtgGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC-------------------CGACCAAGCTCGACCAGGTGTTTGGTCGGGGGTCTCTACGACGGAAAGGGACATCTGCCAGACCTGCAGTGGACCATACTAGATCGACTCAAGACCCATCCAGACCACTTCAAGAC-
gi|14 : cctGAGGGGTATTG-------G-GGGTAA----AT------------------------GTG---G-----GGGTT--GGAGGGGAGGGGGT-------GAGTATTGTGGCT--TGTTGAACTCTATATATCGTCTCATCACCACCTACATATATCCTAATAT--TCAAGTCAATACCTTGAATA-TTTTATGAGTTGTac
gi|15 : tGGTGATGGGGGGATTAA-CAG-G----ATGAACAGCGTTGCACTCTGCACATAGACTCATCGCCACCTACCTATATTCCAAGTT--TCAAATCAATACCTT---CAGTTTT----gct
gi|16 : tcGGGGGATGGGGAAGAGTCTTGTGG--ATTGTGGTACTCTACACATCGTCTCATCACCACCTACATATATTCTAAGTT--TCAAGTCAATACCTTGAATAGTTTtaaattatgctgtggacacataaagtgacagacagtt
gi|17 : gaCAGTGTTGCACTCTGCACATTGACTCATCGTCACCTACCTATATATTCCAAAGTTCAAATC-ATGCCTTCAACAGTTT
gi|2 : TGGACGCTGCACGCCCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGTATATAATACAT-A-A--TTTCTTTAAGACCGTGCATTTAACG-AAAGACCATACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTT-GGAGGGGAAACCTGCAAGGGCTAAAAAGGAACGTTACGACTCCAGGCTATCGAAAAGGACCATGTCATATGTCAAACTGGCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCCTCCGACCGGCCAAATTCGGCGACCAAGATTGATCAGATGTTAGTTCGGAGGTCTACACGACGGAAAGGAACCCCTGTC------CT---GGACTATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACGTCCTC-CTTCTACTCGACCTTTTCACGACCTTCCAGACCCTTTCCCGATGTCTACCCGATAAACACGACCAGCCTGACCTTTT-------------CT-----------CGACCTCTACCCGACATGT-----------ACCCGACCTATACCCGA-TCATGTACCATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTG--CAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCTGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGCCTAGATGTCTTCTTGATAAAATAGCCCTTGCACACTAGTATACATGAGTTTACAAGATCGCTACAAGATGTATACC-AGACCGCTTCCAGACCATCTGGC--TCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCAACCGCTACCGAC-CAAGGTAAAC-CGCTGCAGACCGGGCAGGACCCCCACCCCCTGCAGACTGGGTGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAAAACGTACCATTACC-TACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTTAAGTGTCCAAATCATAACTATACTTTATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCATTGGGCACAAGTAGCTTTAAGTTTACATAAATGTGATTGTTTTACA-TATTGTATACTAAATTTTACCC-G----------------------CCA---AGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGA----------GGGGAAAAAATGAGATGGGGGTGTGGAGAAAAAAAAATAATTT--GGTTTCAAAACAGGAGGGGA--TTTTTTTGGGG-GGGTATGGT-GGT-GGGAATTGTGGTAAGGG---AGTCTGTTGTTTTTTTTTCATCGTCTTGTTGAAAAACAATTGAGGGGAGGGATATTGT--TTGTG-GGGTGAGGGGATTT--------------------CGGTG---GTGGGGATGTTAAGGGTGGTGATGGGTTTAGGCAGAG----GTGACCAGTGTTGCACTCTGCACATTGACTCATCGCCACCTACCTAT------------TAAAATAAAAACCTTCAACAGTTTT----GTTGT
gi|3 : TGGACGCTGCCCGCACGCCGTGGGTACTCTAGTGATACTATAAATAAAGCATATAATACAT-A----------T--GACCGCGCATTTAATGCAAAGATTGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTTAATTTTTG-AGGGGGAAACTGCAAGGGCTGAAAAGGAACGTTACGACTCCCTTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTCCTCACCG---CCGATATGAGTACCTCGGTCTCCC--CGACCGGCCAAATTCAACAACCAAAATTGACCAGATGTTTGGTTGGGGGTCTACACTACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCATTCCAGACCACTTCAAGAC-TACTTGCCGACACACATCCTC-TTTCTTCTCGACATTTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCAATTAACACGACCAGCCCGGCCTTTT-------------CT-----------CGACCTCTACCCGACATCT-----------TCCCGACCTATACTCAA-TCATGTAC----G-GG-CACAATAACAGCAGATTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACACCATGGACGTTCAGCTGCTGGCATTATATAGACAGATTGATAAAA-------C-TATGTGACTAGATGTCTTCCGGATAAATTAGACCTTGTTCACGAGTAAACATGAGTTTACCAGAGCGCTACAAGATGTATATC-AGACCGCTTCCAGACCGTCTGGC-TTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGAAGACCGGACGGGACCCCCACCCCCTGCATACCAAGAGAGATTATTTCACGACCGCATGGTCGAGTTTGATCGAGGTACTCGGATCGGCGGTGAGAACGTACCATTA-CATACATACGTATATATATTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAATCATAACTATACTATATATTGCTCTGACCGACCTG-ACTATACAAAATAAATGCGTAGCTCCAGTGGGCACAAGTAGCTTCAAGTTTAC----ATGTGATTGTTTTACA-AATTGTGTACTAAATTTTACCCAGTt
gi|4 : caagtttgagggctgacaactttTGGACGCTGCCCGCCCGCCGTGGGTACCCTAGTGATAATATAAGTAAAGTATATAATACAT-A-AATT--CTTTAAGACCGTGCATTTAATGCAAAGAC-----------ATATTTGAAAGGTGTGTGTACCTTACTTTCATTGCATTTTTGGAGAGG-------------CTGAAAAGGAACGTTATGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACTGGTCAAATTCGGCGACCAAGATTGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCACGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGAGCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC-CTTCTACTCGACCTCTTAACGACCTTCCAGACCTCTTCCCGATGTCTTACCGATTAACTAGACCAGCCTGACCGTTG-------------CT-----------CGATCTCTACCCGACATCTACCCGACATCTACCCGACCTATACCCGA-TCATGGACTATCG-GG-CACGATAGCAGCAGACAAAGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACAATCGAAGAAGCAACATCATGGAAGTTGAGCAG--------ATATAGAAAGATTGATAAAA-------A-TATGTGACTAGATGTCTTTCGGATAAACTAGACCTTGTACACGAGTATACACGAGTTTACCAGAGCGCTACAAGATGTATATC-ACACCGATTCCAGACCGTCTGGC-TTCTCGAGCGCTACACGGAAAAAAATCTGTGTTGAAAGCCTGACTGCTACCGAC-CAAGGGAGAC-CGTTGCAGACCGGGCGGGACGCCCCCCCCC
gi|5 : GGCAGTATATAGACCGATTGATAAAA-------A-TATGTGTCTAGATGTCTTTCGGATAAACTAGACCTTGCATACGAGTACACATGAGTTAACCAGAACGCTACAAGATGTAT-TC-A----------AGACCGTCTGGCTT-CTCGAGCGCTACACGGAAAAAA-TCCGTGTTGAAACCCCGACCCTTATTGAC-CAAGGTAGAC-TGCTGCAGACCGTGTGGGACCCTAACCCAATGCAGACCGATGGAGATTATTTCACGA------------------TCGAGGTACTCATATCGGCAGTGAGAACGTA--------------------ACATTTCAAATATAC-----------GTGAACC-TGGCCTGTAAAGTGTCCGAACCATAGCTATACTATATATTGCTCTAACCGA--------------AATTAAAGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTATTTTTCA-AACTGTATACTAAATTTTACCCTG------TGTTTTAACTAGAGCTCCGCCAAGCGGGGCATTATAAATCCAAAGGTTTAGATTGAATGAGGGGGGGGGGGGGGGGAAA-TGAGATGTAGGTATGGAGAAAAAAGAA-ACTTT--GGTTATAAACCAGGTTGTG-ATTTTTTTTGGGG-GGA-----------GGGGATTGTGGTTAGTG---GGTGA---GGTTACTTTACATCGTCTTGTTGAAGAACAATTGAGGGGacaca
gi|5 : TTGGGGGGAGGGG-ATTGTGGTT-AGTGGGTGAGGTTACTTTACATCGTCTTGTTGAAGAACAATT---GAGGGGGTGTTAATGGTGGTTATGGGTTTAGGCAGAA----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGCCACCTACCTATATTCCAAGTT--TCAAATCAATACCTTCAACAGCTTT----gtgttaatggtggttatgggtttaggcagaagtgaccagcgttgcactctgcacattgactcatcgccacctacctatattccaagtttcaaatcaataccttcaacagcttttacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|6 : ggcagtatatagaccgattgataaaaatatgtgtctagatgtctttcggataaactagaccttgcatacgagtacacatgagttaaccagaacgctacaagatgtattcaagaccgtctggcttctcgagcgctacacggaaaaaatccgtgttgaaaccccgacccttattgaccaaggtagactgctgcagaccgtgtgggaccctaacccaatgcagaccgatggagattatttcacgatcgaggtactcatatcggcagtgagaacgtaacatttcaaatatacgtgaacctggcctgtaaagtgtccgaaccatagctatactatatattgctctaaccgaaattaaagcgtaactccagtgggcacaagtagcttcaagtttacataaatgtgattatttttcaaactgtatactaaattttaccctgtgttttaactagagctccgccaagcggggcattataaatccaaaggtttagattgaatgaggggggggggggggggaaatgagatgtaggtatggagaaaaaagaaactttggttataaaccaggttgtgattttttGTTCTCACCGACGCCGACCTGAGTACCTTGATTTCCC--CGACCGGCCAAATTCCGCAACAAAGCTCGACCAAATGATTGGTCGGGGATCTACACGACGGAAGGGGACCTCTGCCAGACCTGTAGTGGACCATACTAAATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CCCTTGCCGACACACATCCCGACTTCTACTCGACCTCTGCTCGACCTTCCAGACCCCTTCTCGATGTCTACCCGATCAACACGACCAGCCCGACCTTTTTTCTTGACTTTTACT-----------CGACCTCTACCCGACTTTT-----------ACCCGACTTCCACCCGA-ATATGCACGATCG-AATCACGAGAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTTAGTATTCAGCTGACCAAAAACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGAtacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|7 : GTTCTCACCG---CCGATCTGAGTACTTCGATTTCCC--CGACCGGCCAAATCCCGCGACCAAGCTCGATCAGGTGTTTGGTCTGGGATCTACACGACGGA--------CCTG----ACCTGTAGTGGACCATACTAGATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACAAACATCCCGGCTTCTACTCGACCTCTGCTCGATCTTCCCTAGCCCTTCCCGATGTCTACCCGATCAACATGACCAGCCCGACCTTTT-------------CTAGACTTATATCCGACCTCCACCCGACTTAT-----------ACCCGACCTCTACCCGACTTATGCACGATCGCAG-CACGA
gi|8 : CGGATTGGTAAAACTATGTGACTATGTGACTAGATGTCTTCCCGATGAACTAGATCTTGTACACGAGT----------TTACCAGAGCGCTACAAGATGTAT-TTTAGACCGCTTCCA-----TCTGGCTT-CTCGAG---------G----------GTGTCGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCTGACCGGGCAGGA----CA-CCCCTGCAGACCGCGGGAGATCATTTCACGA-CGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACG
gi|9 : CGACTCAAGACCCATCCAGACCACTTCAAGACACAC
gi|9 : G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----ATAGTTTGTTCAGTATTCAGTTAACCAAAGACTATCGAAGAAGCAAAGTCAAAGACGTTCAGCAGCAGGTATTGTATAGGCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgatagcagcagactaggtataaaactgtaatagtttgttcagtattcagttaaccaaagactatcgaagaagcaaagtcaaagacgttcagcagcaggtattgtataggc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGGGGGGGGGGCTTGCTAATGTAATCAATTTTACTGCATTTGTTATCTAATCAAATTCCAGTATTTCCAGGTCTTCTAAATTAAAACTTTCTACAACCAAGTTTATTGAGCTAACCACAAAACAGTCGTCAACAATTCATCAA
Unaligned ( gi|18 ): AAGTTTGAGGACTGACAACTTTTGGACGCTGCCCGC
Alignments
lowQualScore : 333333333 22222 11 44444444444444444444444444 33333333333 11111 222222222 1111111 22222222222222 11 1 1111 111 555555555555555555555 555555555 1 111 1 11 11 2222222222 555555555 333333333333333 1111 666666666666666666666 111 1 1111 1111
lowQualScore : 1 888888888 3 2 777 3 99999 0 888 66 4 0 3 1 0 00 2 0 0 4 7 88 0 99999999999999999999999999 1 11111111111 6 7 6 5 66666 333333333 1 3 1 3 2 2 3333333 6 6 55 1 77777777777777 0 00 0 9 0 3 2 2 2222 0 3 333 2 3 888888888888888888888 333333333 0 3 666 3 88 44 0 8888888888 222222222 2 777777777777777 7777 555555555555555555555 444 1 0 3 22 5 0 0 1 2222 0 3 77 1 4 7777
lowQualScore : . ......... . . ... . ..... . ... .. . . . . . .. . . . . . .. . .......................... . ........... . . . . ..... ......... . . . . . . ....... . . .. . .............. . .. . . . . . . .... . . ... . . ..................... ......... . . ... . .. .. . .......... ......... . ............... .... ..................... ... . . . .. . . . . .... . . .. . . ....
lowQualScore : 0 888888888 2 5 555 2 22222 8 888 99 5 2 0 1 1 99 5 1 2 4 3 33 3 33333333333333333333333333 0 77777777777 7 5 7 7 77777 333333333 8 5 0 5 5 5 5555555 7 7 00 0 44444444444444 6 00 8 2 8 2 5 5 5555 2 2 222 5 5 666666666666666666666 333333333 7 3 777 3 33 77 2 5555555555 000000000 5 222222222222222 0000 888888888888888888888 000 0 8 2 44 7 9 7 4 1111 7 1 99 6 3 0000
consensus : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CT-----------CGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGA-TCATGTACNATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTGT-----TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGA---------GGGGAAAAAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGGAATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG-----TGGGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
Reference ( family-1843 ) : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGGAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CT-----------CGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGA-TCATGTACNATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTGT-----TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGA---------GGGGGAAAAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGGAATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG-----T--GGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GNGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
gi|1 : TGGACGCTGCCCGCGCTCCATTTGCGCTCTAGTGATACTATAAGTAAAGCATATACTACATTATA--T--CTTTAAGACTGTGCATTTAATGCAAAGACCGTACATGGATATATCTGAAAGGTTTATATACCTTACTTTCATTGCATTTTTGGAAGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCTAGATTTACCAGATGTTTAGTCGGGGGTCTACAAGTCGGAAAGGGACCTTTGCCAAA------------CATACTATATCAACTTAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACACACATCGTC--CTTCTACTCGACCTCTTCACGGCCTTTCTAAGCCATTCCCGATGTCTACTCGATTAACACGACAAATCCGACCTTTT-------------CT-----------CGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGA-TTATGTACTACCG-GG-CACGACAGCAGCAGACTACGTATAAAACTGTAGTACTGTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCTTGGAAGTTGAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGCGACTACATGTCTTCCGGATAAACTAAACCTTGTACACGAGTATACATTAGTT----------------------TATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGC----------------TCCGTGTAAAAACCCCGACCCC--CCCACACA---CACACACACTGCA-----------------ACCCCCTGCCGATCGAAGGAGATCATTTCACGACCGCATGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACA-----------TTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTTCAAACCATAACTATAATATATATTGCTCTGACTGACCTGTAC-ATACGAAATTAATGCGTAACACCAGTGGGCAGAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTATGTGATTGTATACTAAATTTTACCCTGTGTAAATGTTTTAACAAGAG-TCCACCAAGCGAGGCATTATACGCCCGAAAGTTTGAATTGAATGA---------GGGGAAAACATTGAGAT-G-GGGTGTGGAGAAAAAAAGA-AATTTTCGGTTTCAAAACAGGAGGGGAATTTTTTTTAGGGTGG--TTGGGG--TGGGGATTGTGGTTAGGAGG-----TGGGGTTTCTTTACATCATCATGATGAAAAACTATTGAAGGGAGGGACTTTTT--TT-TG-GGGTGG----GGGGATTT--------------------CGGTG---GTGGGGGGGTTAAGGGGGGTGGGGGGT-TTTGGCAGAG----GTGACCAGCGTTGTACTCTGCACATTGACTAATCGCCAACTTCC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----
gi|10 : caagtttgagggctgacaatgttGATCGAGGTACTCAGCTCGGCGGTGAGAACGGGCCATTA--TATAAACGtaagttatgctgtggacataaaacgtaacagacagtttatc
gi|10 : cGTTCTCACCG---CCGAGCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCTGC----------GACCAAG---------------CT---CGACGGAAAAGGACCCCTGCCAAACCTCTAGCGGACCATACTATATCAACTCAAGACCCTTCCGGACTACTTCAAAAC-CACATCCCGTCACACATCtccccgaccggccaaattctgcgaccaagctcgacggaaaaggacccctgccaaacctctagcggaccatactatatcaactcaagacccttccggactacttcaaaaccacatcccgtcacacatc
gi|11 : ccgtttatataatggcccTTTTTTGGGGGG--TGGCGGGTTGGGGATTGTGATTAGGGG-----------TTTCTTTACATCGTCTTGTTGAAAAACAAATGAGGA-----------------------TGG----GGGGATTT--------------------CGGTGCGCGAGGGGGGGTTAAGGG-GGTGCGGGGT-CT-GGCAGAG----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGC
gi|12 : gtgCCT-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC-------------------CGACCAAGCTCGACCAGGTGTTTGGTCGGGGGTCTCTACGACGGAAAGGGACATCTGCCAGACCTGCAGTGGACCATACTAGATCGACTCAAGACCCATCCAGACCACTTCAAGAC-
gi|14 : GAGGGGTATTG-------G-GGGTAAATGTGGGGGTT-------------------------G---GAGGGGAGG----GGGTGA------GTATT------------GTGGCT--TGTTGAACTCTATATATCGTCTCATCACCACCTACA--TATATCCTAATATTCAAGTCAATACCTTGAATA-TTTTATGAGTTGTac
gi|15 : tGGTGATGGGGGGA-TTAA-CAG-G----ATGAACAGCGTTGCACTCTGCACATAGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTT---CAGTTTT----gct
gi|16 : tcGGGGGA-TGGGGAAGAGTCTTGTGG--ATTGTGGTACTCTACACATCGTCTCATCACCACCTACA--TATATTCTAAGTTTCAAGTCAATACCTTGAATAGTTTtaaattatgctgtggacacataaagtgacagacagtt
gi|17 : gaCAGTGTTGCACTCTGCACATTGACTCATCGTCACCTACCTATATATTCCAAAGTTCAAATC-ATGCCTTCAACAGTTT
gi|2 : TGGACGCTGCACGCCCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGTATATAATACAT-A-A--TTTCTTTAAGACCGTGCATTTAACG-AAAGACCATACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTT-GGAGGGGAAACCTGCAAGGGCTAAAAAGGAACGTTACGACTCCAGGCTATCGAAAAGGACCATGTCATATGTCAAACTGGCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCCTCCGACCGGCCAAATTCGGCGACCAAGATTGATCAGATGTTAGTTCGGAGGTCTACACGACGGAAAGGAACCCCTGTC------CT---GGACTATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACGTCCTC--CTTCTACTCGACCTTTTCACGACCTTCCAGACCCTTTCCCGATGTCTACCCGATAAACACGACCAGCCTGACCTTTT-------------CT-----------CGACCTCTACCCGACATGT-----------ACCCGACCTATACCCGA-TCATGTACCATCG-GG-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTG--CAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCTGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGCCTAGATGTCTTCTTGATAAAATAGCCCTTGCACACTAGTATACATGAGTTTACAAGATCGCTACAAGATGTATACCAGACCGCTTCCAGACCATCTGGC-TCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCAACCGCTACCGAC-CAAGGTAAAC-CGCTGCAGACCGGGCAGGACCCCCACCCCCTGCAGACTGGGTGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAAAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTTAAGTGTCCAAATCATAACTATACTTTATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCATTGGGCACAAGTAGCTTTAAGTTTACATAAATGTGATTGTTTTACA-TATTGTATACTAAATTTTAC--------------------------CCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGA---------GGGGAAAAAA-TGAGATGG-GGGTGTGGAGAAAAAAAAATAATTT--GGTTTCAAAACAGGAGGGGA--TTTTTTTGGGGGGGTATGGTGG--TGGGAATTGTGGTAAGGGAGTCTGTT--GTTTTTTTTTCATCGTCTTGTTGAAAAACAATTGAGGGGAGGGATATTGT--TTGTG-GGGTGA----GGGGATTT--------------------CGGTG---GTGGGGATGTTAAGGGTGGTGATGGGT-TTAGGCAGAG----GTGACCAGTGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TA----------TTAAAATAAAAACCTTCAACAGTTTT----GTTGT
gi|3 : TGGACGCTGCCCGCACGCCGTGGGTACTCTAGTGATACTATAAATAAAGCATATAATACAT-A----------T--GACCGCGCATTTAATGCAAAGATTGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTTAATTTTTGAGGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCCTTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTCCTCACCG---CCGATATGAGTACCTCGGTCTCCC--CGACCGGCCAAATTCAACAACCAAAATTGACCAGATGTTTGGTTGGGGGTCTACACTACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCATTCCAGACCACTTCAAGAC-TACTTGCCGACACACATCCTC--TTTCTTCTCGACATTTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCAATTAACACGACCAGCCCGGCCTTTT-------------CT-----------CGACCTCTACCCGACATCT-----------TCCCGACCTATACTCAA-TCATGTAC----G-GG-CACAATAACAGCAGATTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACACCATGGACGTTCAGCTGCTGGCATTATATAGACAGATTGATAAAA-------C-TATGTGACTAGATGTCTTCCGGATAAATTAGACCTTGTTCACGAGTAAACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGAAGACCGGACGGGACCCCCACCCCCTGCATACCAAGAGAGATTATTTCACGACCGCATGGTCGAGTTTGATCGAGGTACTCGGATCGGCGGTGAGAACGTACCATTACATACATACGTATATATATTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAATCATAACTATACTATATATTGCTCTGACCGACCTG-ACTATACAAAATAAATGCGTAGCTCCAGTGGGCACAAGTAGCTTCAAGTTTAC----ATGTGATTGTTTTACA-AATTGTGTACTAAATTTTACCCAGT-----t
gi|4 : caagtttgagggctgacaactttTGGACGCTGCCCGCCCGCCGTGGGTACCCTAGTGATAATATAAGTAAAGTATATAATACAT-A-AATT--CTTTAAGACCGTGCATTTAATGCAAAGAC-----------ATATTTGAAAGGTGTGTGTACCTTACTTTCATTGCATTTTTGGAGAGG-------------CTGAAAAGGAACGTTATGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACTGGTCAAATTCGGCGACCAAGATTGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCACGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGAGCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTAACGACCTTCCAGACCTCTTCCCGATGTCTTACCGATTAACTAGACCAGCCTGACCGTTG-------------CT-----------CGATCTCTACCCGACATCTACCCGACATCTACCCGACCTATACCCGA-TCATGGACTATCG-GG-CACGATAGCAGCAGACAAAGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACAATCGAAGAAGCAACATCATGGAAGTTGAGCAG--------ATATAGAAAGATTGATAAAA-------A-TATGTGACTAGATGTCTTTCGGATAAACTAGACCTTGTACACGAGTATACACGAGTTTACCAGAGCGCTACAAGATGTATATCACACCGATTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCTGTGTTGAAAGCCTGACTGCTACCGAC-CAAGGGAGAC-CGTTGCAGACCGGGCGGGACGCCCCCCCCC
gi|5 : GGCAGTATATAGACCGATTGATAAAA-------A-TATGTGTCTAGATGTCTTTCGGATAAACTAGACCTTGCATACGAGTACACATGAGTTAACCAGAACGCTACAAGATGTAT-TCA----------AGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAA-TCCGTGTTGAAACCCCGACCCTTATTGAC-CAAGGTAGAC-TGCTGCAGACCGTGTGGGACCCTAACCCAATGCAGACCGATGGAGATTATTTCACGA------------------TCGAGGTACTCATATCGGCAGTGAGA------------------ACGTA-ACATTTCAAATATAC-----------GTGAACC-TGGCCTGTAAAGTGTCCGAACCATAGCTATACTATATATTGCTCTAACCGA--------------AATTAAAGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTATTTTTCA-AACTGTATACTAAATTTTACCCTG------TGTTTTAACTAGAGCTCCGCCAAGCGGGGCATTATAAATCCAAAGGTTTAGATTGAATGAGGGGGGGGGGGGGGGGAAA-TGAGAT-GTAGGTATGGAGAAAAAAGAA-ACTTT--GGTTATAAACCAGGTTGTG-ATTTTTTTTGGGGGGA-----------GGGGATTGTGGTTAGTGGG-----TGAGGTTACTTTACATCGTCTTGTTGAAGAACAATTGAGGGGacaca
gi|5 : TTGGGGGGAGGGG-ATTGTGGTT-AGTGGGTGA----GGTTACTTTACATCGTCTTGTTGAAGAACAATT---GAGGGGGTGTTAATGGTGGTTATGGGT-TTAGGCAGAA----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGCTTT----gtgttaatggtggttatgggtttaggcagaagtgaccagcgttgcactctgcacattgactcatcgccacctacctatattccaagtttcaaatcaataccttcaacagcttttacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|6 : ggcagtatatagaccgattgataaaaatatgtgtctagatgtctttcggataaactagaccttgcatacgagtacacatgagttaaccagaacgctacaagatgtattcaagaccgtctggcttctcgagcgctacacggaaaaaatccgtgttgaaaccccgacccttattgaccaaggtagactgctgcagaccgtgtgggaccctaacccaatgcagaccgatggagattatttcacgatcgaggtactcatatcggcagtgagaacgtaacatttcaaatatacgtgaacctggcctgtaaagtgtccgaaccatagctatactatatattgctctaaccgaaattaaagcgtaactccagtgggcacaagtagcttcaagtttacataaatgtgattatttttcaaactgtatactaaattttaccctgtgttttaactagagctccgccaagcggggcattataaatccaaaggtttagattgaatgaggggggggggggggggaaatgagatgtaggtatggagaaaaaagaaactttggttataaaccaggttgtgattttttGTTCTCACCGACGCCGACCTGAGTACCTTGATTTCCC--CGACCGGCCAAATTCCGCAACAAAGCTCGACCAAATGATTGGTCGGGGATCTACACGACGGAAGGGGACCTCTGCCAGACCTGTAGTGGACCATACTAAATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CCCTTGCCGACACACATCC-CGACTTCTACTCGACCTCTGCTCGACCTTCCAGACCCCTTCTCGATGTCTACCCGATCAACACGACCAGCCCGACCTTTTTTCTTGACTTTTACT-----------CGACCTCTACCCGACTTTT-----------ACCCGACTTCCACCCGA-ATATGCACGATCG-AATCACGAGAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTTAGTATTCAGCTGACCAAAAACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGAtacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|7 : GTTCTCACCG---CCGATCTGAGTACTTCGATTTCCC--CGACCGGCCAAATCCCGCGACCAAGCTCGATCAGGTGTTTGGTCTGGGATCTACACGACGGA--------CCTG----ACCTGTAGTGGACCATACTAGATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACAAACATCC-CGGCTTCTACTCGACCTCTGCTCGATCTTCCCTAGCCCTTCCCGATGTCTACCCGATCAACATGACCAGCCCGACCTTTT-------------CTAGACTTATATCCGACCTCCACCCGACTTAT-----------ACCCGACCTCTACCCGACTTATGCACGATCGCAG-CACGA
gi|8 : CGGATTGGTAAAACTATGTGACTATGTGACTAGATGTCTTCCCGATGAACTAGATCTTGTACACGAGT----------TTACCAGAGCGCTACAAGATGTATTTTAGACCGCTTCCA-----TCTGGCTTCTCGAG---------G----------GTGTCGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCTGACCGGGCAGGA----CA-CCCCTGCAGACCGCGGGAGATCATTTCACGA-CGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACG
gi|9 : CGACTCAAGACCCATCCAGACCACTTCAAGACACAC
gi|9 : G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----ATAGTTTGTTCAGTATTCAGTTAACCAAAGACTATCGAAGAAGCAAAGTCAAAGACGTTCAGCAGCAGGTATTGTATAGGCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgatagcagcagactaggtataaaactgtaatagtttgttcagtattcagttaaccaaagactatcgaagaagcaaagtcaaagacgttcagcagcaggtattgtataggc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGGGGGGGGGGCTTGCTAATGTAATCAATTTTACTGCATTTGTTATCTAATCAAATTCCAGTATTTCCAGGTCTTCTAAATTAAAACTTTCTACAACCAAGTTTATTGAGCTAACCACAAAACAGTCGTCAACAATTCATCAA
Unaligned ( gi|18 ): AAGTTTGAGGACTGACAACTTTTGGACGCTGCCCGC
Alignments
lowQualScore : 333333333 22222 11 3333333333333 33333333333 111 11111 11111 222222222 1111111 22222222222222 11 1 1111 111 66666666666666666666 555555555 1 111 1 11 2 2222222222 2222222 333333333333333 1111 666666666666666666666 111 1 1111 1111
lowQualScore : 1 888888888 3 2 777 3 55555 0 888 66 4 0 3 1 0 00 2 0 0 4 7 88 0 6666666666666 11111111111 222 44444 5 66666 333333333 1 3 1 3 2 2 3333333 6 6 55 1 77777777777777 0 00 0 9 0 3 2 2 2222 0 3 333 2 3 55555555555555555555 333333333 3 666 3 88 3 0 8888888888 6666666 2 777777777777777 7777 555555555555555555555 444 1 0 3 22 5 0 0 1 2222 0 3 77 1 4 7777
lowQualScore : . ......... . . ... . ..... . ... .. . . . . . .. . . . . . .. . ............. ........... ... ..... . ..... ......... . . . . . . ....... . . .. . .............. . .. . . . . . . .... . . ... . . .................... ......... . ... . .. . . .......... ....... . ............... .... ..................... ... . . . .. . . . . .... . . .. . . ....
lowQualScore : 0 888888888 2 5 555 2 88888 8 888 99 5 2 0 1 1 99 5 1 2 4 3 33 3 7777777777777 77777777777 222 33333 7 77777 333333333 8 5 0 5 5 5 5555555 7 7 00 0 44444444444444 6 00 8 2 8 2 5 5 5555 2 2 222 5 5 77777777777777777777 333333333 3 777 3 33 7 2 5555555555 0000000 5 222222222222222 0000 888888888888888888888 000 4 8 2 44 7 9 7 4 1111 7 1 99 6 3 0000
consensus : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTGT------GTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGGA-TTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
Reference ( family-1843 ) : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACNATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTGT-----TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGGAATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-GGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
gi|1 : TGGACGCTGCCCGCGCTCCATTTGCGCTCTAGTGATACTATAAGTAAAGCATATACTACATTATA--T--CTTTAAGACTGTGCATTTAATGCAAAGACCGTACATGGATATATCTGAAAGGTTTATATACCTTACTTTCATTGCATTTTTGGAAGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCTAGATTTACCAGATGTTTAGTCGGGGGTCTACAAGTCGGAAAGGGACCTTTGCCAAA------------CATACTATATCAACTTAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACACACATCGTC--CTTCTACTCGACCTCTTCACGGCCTTTCTAAGCCATTCCCGATGTCTACTCGATTAACACGACAAATCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATTATGTACTACCGG-----G-CACGACAGCAGCAGACTACGTATAAAACTGTAGTACTGTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCTTGGAAGTTGAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGCGACTACATGTCTTCCGGATAAACTAAACCTTGTACACGAGTATACATTAGTT----------------------TATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGC----------------TCCGTGTAAAAACCCCGACCCC--CCCACACA---CACACACACTGCA-----------------ACCCCCTGCCGATCGAAGGAGATCATTTCACGACCGCATGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACA-----------TTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTTCAAACCATAACTATAATATATATTGCTCTGACTGACCTGTAC-ATACGAAATTAATGCGTAACACCAGTGGGCAGAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTATGTGATTGTATACTAAATTTTACCCTGTGTAAATGTTTTAACAAGAG-TCCACCAAGCGAGGCATTATACGCCCGAAAGTTTGAATTGAATGAGGGGAAA---------ACATTGAGAT-G-GGGTGTGGAGAAAAAAAGA-AATTTTCGGTTTCAAAACAGGAGGGGAATTTTTTTTAGGGTGG--TTGGGG--TGGGGATTGTGGTTAGGAGG--TG-GGGTTTCTTTACATCATCATGATGAAAAACTATTGAAGGGAGGGACTTTTT--TT-TG-GGGTGG----GGGGATTT--------------------CGGTG---GTGGGGGGGTTAAGGGGGGTGGGGGGT-TTTGGCAGAG----GTGACCAGCGTTGTACTCTGCACATTGACTAATCGCCAACTTCC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----
gi|10 : caagtttgagggctgacaatgttGATCGAGGTACTCAGCTCGGCGGTGAGAACGGGCCATTA--TATAAACGtaagttatgctgtggacataaaacgtaacagacagtttatc
gi|10 : cGTTCTCACCG---CCGAGCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCTGC----------GACCAAG---------------CT---CGACGGAAAAGGACCCCTGCCAAACCTCTAGCGGACCATACTATATCAACTCAAGACCCTTCCGGACTACTTCAAAAC-CACATCCCGTCACACATCtccccgaccggccaaattctgcgaccaagctcgacggaaaaggacccctgccaaacctctagcggaccatactatatcaactcaagacccttccggactacttcaaaaccacatcccgtcacacatc
gi|11 : ccgtttatataatggcccTTTTTTGGGGGG--TGGCGGGTTGGGGATTGTGATTAGGGG---------TTTCTTTACATCGTCTTGTTGAAAAACAAATGAGGA-----------------------TGG----GGGGATTT--------------------CGGTGCGCGAGGGGGGGTTAAGGG-GGTGCGGGGT-CT-GGCAGAG----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGC
gi|12 : gtgCCT-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC-------------------CGACCAAGCTCGACCAGGTGTTTGGTCGGGGGTCTCTACGACGGAAAGGGACATCTGCCAGACCTGCAGTGGACCATACTAGATCGACTCAAGACCCATCCAGACCACTTCAAGAC-
gi|14 : GAGGGGTATTG-------G-GGGTAAATGTGGGGGTT-------------------------G---GAGGGGAGG----GGGTGA------GTATT------------GTGGCT--TGTTGAACTCTATATATCGTCTCATCACCACCTACA--TATATCCTAATATTCAAGTCAATACCTTGAATA-TTTTATGAGTTGTac
gi|15 : tGGTGATGGGGGGA-TTAA-CAG-G----ATGAACAGCGTTGCACTCTGCACATAGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTT---CAGTTTT----gct
gi|16 : tcGGGGGA-TGGGGAAGAGTCTTGTGG--ATTGTGGTACTCTACACATCGTCTCATCACCACCTACA--TATATTCTAAGTTTCAAGTCAATACCTTGAATAGTTTtaaattatgctgtggacacataaagtgacagacagtt
gi|17 : gaCAGTGTTGCACTCTGCACATTGACTCATCGTCACCTACCTATATATTCCAAAGTTCAAATC-ATGCCTTCAACAGTTT
gi|2 : TGGACGCTGCACGCCCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGTATATAATACAT-A-A--TTTCTTTAAGACCGTGCATTTAACG-AAAGACCATACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTT-GGAGGGGAAACCTGCAAGGGCTAAAAAGGAACGTTACGACTCCAGGCTATCGAAAAGGACCATGTCATATGTCAAACTGGCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCCTCCGACCGGCCAAATTCGGCGACCAAGATTGATCAGATGTTAGTTCGGAGGTCTACACGACGGAAAGGAACCCCTGTC------CT---GGACTATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACGTCCTC--CTTCTACTCGACCTTTTCACGACCTTCCAGACCCTTTCCCGATGTCTACCCGATAAACACGACCAGCCTGACCTTTT-------------CTCGACCTCTACCCGACATGT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTG--CAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCTGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGCCTAGATGTCTTCTTGATAAAATAGCCCTTGCACACTAGTATACATGAGTTTACAAGATCGCTACAAGATGTATACCAGACCGCTTCCAGACCATCTGGC-TCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCAACCGCTACCGAC-CAAGGTAAAC-CGCTGCAGACCGGGCAGGACCCCCACCCCCTGCAGACTGGGTGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAAAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTTAAGTGTCCAAATCATAACTATACTTTATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCATTGGGCACAAGTAGCTTTAAGTTTACATAAATGTGATTGTTTTACA-TATTGTATACTAAATTTTAC--------------------------CCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGATGG-GGGTGTGGAGAAAAAAAAATAATTT--GGTTTCAAAACAGGAGGGGA--TTTTTTTGGGGGGGTATGGTGG--TGGGAATTGTGGTAAGGGAGTCTGTTGTTTTTTTTTCATCGTCTTGTTGAAAAACAATTGAGGGGAGGGATATTGT--TTGTG-GGGTGA----GGGGATTT--------------------CGGTG---GTGGGGATGTTAAGGGTGGTGATGGGT-TTAGGCAGAG----GTGACCAGTGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TA----------TTAAAATAAAAACCTTCAACAGTTTT----GTTGT
gi|3 : TGGACGCTGCCCGCACGCCGTGGGTACTCTAGTGATACTATAAATAAAGCATATAATACAT-A----------T--GACCGCGCATTTAATGCAAAGATTGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTTAATTTTTGAGGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCCTTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTCCTCACCG---CCGATATGAGTACCTCGGTCTCCC--CGACCGGCCAAATTCAACAACCAAAATTGACCAGATGTTTGGTTGGGGGTCTACACTACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCATTCCAGACCACTTCAAGAC-TACTTGCCGACACACATCCTC--TTTCTTCTCGACATTTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCAATTAACACGACCAGCCCGGCCTTTT-------------CTCGACCTCTACCCGACATCT-----------TCCCGACCTATACTCAATCATGTAC----GG-----G-CACAATAACAGCAGATTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACACCATGGACGTTCAGCTGCTGGCATTATATAGACAGATTGATAAAA-------C-TATGTGACTAGATGTCTTCCGGATAAATTAGACCTTGTTCACGAGTAAACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGAAGACCGGACGGGACCCCCACCCCCTGCATACCAAGAGAGATTATTTCACGACCGCATGGTCGAGTTTGATCGAGGTACTCGGATCGGCGGTGAGAACGTACCATTACATACATACGTATATATATTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAATCATAACTATACTATATATTGCTCTGACCGACCTG-ACTATACAAAATAAATGCGTAGCTCCAGTGGGCACAAGTAGCTTCAAGTTTAC----ATGTGATTGTTTTACA-AATTGTGTACTAAATTTTACCCAGT-----t
gi|4 : caagtttgagggctgacaactttTGGACGCTGCCCGCCCGCCGTGGGTACCCTAGTGATAATATAAGTAAAGTATATAATACAT-A-AATT--CTTTAAGACCGTGCATTTAATGCAAAGAC-----------ATATTTGAAAGGTGTGTGTACCTTACTTTCATTGCATTTTTGGAGAGG-------------CTGAAAAGGAACGTTATGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACTGGTCAAATTCGGCGACCAAGATTGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCACGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGAGCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTAACGACCTTCCAGACCTCTTCCCGATGTCTTACCGATTAACTAGACCAGCCTGACCGTTG-------------CTCGATCTCTACCCGACATCTACCCGACATCTACCCGACCTATACCCGATCATGGACTATCGG-----G-CACGATAGCAGCAGACAAAGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACAATCGAAGAAGCAACATCATGGAAGTTGAGCAG--------ATATAGAAAGATTGATAAAA-------A-TATGTGACTAGATGTCTTTCGGATAAACTAGACCTTGTACACGAGTATACACGAGTTTACCAGAGCGCTACAAGATGTATATCACACCGATTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCTGTGTTGAAAGCCTGACTGCTACCGAC-CAAGGGAGAC-CGTTGCAGACCGGGCGGGACGCCCCCCCCC
gi|5 : GGCAGTATATAGACCGATTGATAAAA-------A-TATGTGTCTAGATGTCTTTCGGATAAACTAGACCTTGCATACGAGTACACATGAGTTAACCAGAACGCTACAAGATGTAT-TCA----------AGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAA-TCCGTGTTGAAACCCCGACCCTTATTGAC-CAAGGTAGAC-TGCTGCAGACCGTGTGGGACCCTAACCCAATGCAGACCGATGGAGATTATTTCACGA------------------TCGAGGTACTCATATCGGCAGTGAGA------------------ACGTA-ACATTTCAAATATAC-----------GTGAACC-TGGCCTGTAAAGTGTCCGAACCATAGCTATACTATATATTGCTCTAACCGA--------------AATTAAAGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTATTTTTCA-AACTGTATACTAAATTTTACCCTGT------GTTTTAACTAGAGCTCCGCCAAGCGGGGCATTATAAATCCAAAGGTTTAGATTGAATGAGGGGGGGGGGGGGGGGAAA-TGAGAT-GTAGGTATGGAGAAAAAAGAA-ACTTT--GGTTATAAACCAGGTTGTGA-TTTTTTTTGGGGGGA-----------GGGGATTGTGGTTAGTGGG--TG-AGGTTACTTTACATCGTCTTGTTGAAGAACAATTGAGGGGacaca
gi|5 : TTGGGGGGAGGGG-ATTGTGGTT-AGTGGGTGA----GGTTACTTTACATCGTCTTGTTGAAGAACAATT---GAGGGGGTGTTAATGGTGGTTATGGGT-TTAGGCAGAA----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGCTTT----gtgttaatggtggttatgggtttaggcagaagtgaccagcgttgcactctgcacattgactcatcgccacctacctatattccaagtttcaaatcaataccttcaacagcttttacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|6 : ggcagtatatagaccgattgataaaaatatgtgtctagatgtctttcggataaactagaccttgcatacgagtacacatgagttaaccagaacgctacaagatgtattcaagaccgtctggcttctcgagcgctacacggaaaaaatccgtgttgaaaccccgacccttattgaccaaggtagactgctgcagaccgtgtgggaccctaacccaatgcagaccgatggagattatttcacgatcgaggtactcatatcggcagtgagaacgtaacatttcaaatatacgtgaacctggcctgtaaagtgtccgaaccatagctatactatatattgctctaaccgaaattaaagcgtaactccagtgggcacaagtagcttcaagtttacataaatgtgattatttttcaaactgtatactaaattttaccctgtgttttaactagagctccgccaagcggggcattataaatccaaaggtttagattgaatgaggggggggggggggggaaatgagatgtaggtatggagaaaaaagaaactttggttataaaccaggttgtgattttttGTTCTCACCGACGCCGACCTGAGTACCTTGATTTCCC--CGACCGGCCAAATTCCGCAACAAAGCTCGACCAAATGATTGGTCGGGGATCTACACGACGGAAGGGGACCTCTGCCAGACCTGTAGTGGACCATACTAAATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CCCTTGCCGACACACATCC-CGACTTCTACTCGACCTCTGCTCGACCTTCCAGACCCCTTCTCGATGTCTACCCGATCAACACGACCAGCCCGACCTTTTTTCTTGACTTTTACTCGACCTCTACCCGACTTTT-----------ACCCGACTTCCACCCGAATATGCACGATCGA-----ATCACGAGAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTTAGTATTCAGCTGACCAAAAACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGAtacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|7 : GTTCTCACCG---CCGATCTGAGTACTTCGATTTCCC--CGACCGGCCAAATCCCGCGACCAAGCTCGATCAGGTGTTTGGTCTGGGATCTACACGACGGA--------CCTG----ACCTGTAGTGGACCATACTAGATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACAAACATCC-CGGCTTCTACTCGACCTCTGCTCGATCTTCCCTAGCCCTTCCCGATGTCTACCCGATCAACATGACCAGCCCGACCTTTT-------------CTAGACTTATATCCGACCTCC-----------ACCCGACTTATACCCGACC-TCTACC--CGACTTATG-CACGATCGCAGCA
gi|8 : CGGATTGGTAAAACTATGTGACTATGTGACTAGATGTCTTCCCGATGAACTAGATCTTGTACACGAGT----------TTACCAGAGCGCTACAAGATGTATTTTAGACCGCTTCCA-----TCTGGCTTCTCGAG---------G----------GTGTCGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCTGACCGGGCAGGA----CA-CCCCTGCAGACCGCGGGAGATCATTTCACGA-CGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGcga
gi|9 : CGACTCAAGACCCATCCAGACCACTTCAAGACACAC
gi|9 : -----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----ATAGTTTGTTCAGTATTCAGTTAACCAAAGACTATCGAAGAAGCAAAGTCAAAGACGTTCAGCAGCAGGTATTGTATAGGCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgatagcagcagactaggtataaaactgtaatagtttgttcagtattcagttaaccaaagactatcgaagaagcaaagtcaaagacgttcagcagcaggtattgtataggc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGGGGGGGGGGCTTGCTAATGTAATCAATTTTACTGCATTTGTTATCTAATCAAATTCCAGTATTTCCAGGTCTTCTAAATTAAAACTTTCTACAACCAAGTTTATTGAGCTAACCACAAAACAGTCGTCAACAATTCATCAA
Unaligned ( gi|18 ): AAGTTTGAGGACTGACAACTTTTGGACGCTGCCCGC
Alignments
lowQualScore : 333333333 22222 11 3333333333333 33333333333 111 11111 11111 222222222 1111111 22222222222222 11 1 1111 111 555555555555555555555 555555555 1 111 1 11 1 2222222222 2222222 333333333333333 1111 666666666666666666666 111 1 1111 1111
lowQualScore : 1 888888888 3 2 777 3 55555 0 888 66 4 0 3 1 0 00 2 0 0 4 7 88 0 6666666666666 11111111111 222 44444 5 66666 333333333 1 3 1 3 2 2 3333333 6 6 55 1 77777777777777 0 00 0 9 0 3 2 2 2222 0 3 333 2 3 111111111111111111111 333333333 3 666 3 88 3 7 0 8888888888 4444444 2 777777777777777 7777 555555555555555555555 444 1 0 3 22 5 0 0 1 2222 0 3 77 1 4 7777
lowQualScore : . ......... . . ... . ..... . ... .. . . . . . .. . . . . . .. . ............. ........... ... ..... . ..... ......... . . . . . . ....... . . .. . .............. . .. . . . . . . .... . . ... . . ..................... ......... . ... . .. . . . .......... ....... . ............... .... ..................... ... . . . .. . . . . .... . . .. . . ....
lowQualScore : 0 888888888 2 5 555 2 88888 8 888 99 5 2 0 1 1 99 5 1 2 4 3 33 3 7777777777777 77777777777 555 33333 7 77777 333333333 8 5 0 5 5 5 5555555 7 7 00 0 44444444444444 6 00 8 2 8 2 5 5 5555 2 2 222 5 5 111111111111111111111 333333333 3 777 3 33 3 3 2 5555555555 0000000 5 222222222222222 0000 888888888888888888888 000 4 8 2 44 7 9 7 4 1111 7 1 99 6 3 0000
consensus : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
Reference ( family-1843 ) : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
gi|1 : TGGACGCTGCCCGCGCTCCATTTGCGCTCTAGTGATACTATAAGTAAAGCATATACTACATTATA--T--CTTTAAGACTGTGCATTTAATGCAAAGACCGTACATGGATATATCTGAAAGGTTTATATACCTTACTTTCATTGCATTTTTGGAAGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCTAGATTTACCAGATGTTTAGTCGGGGGTCTACAAGTCGGAAAGGGACCTTTGCCAAA------------CATACTATATCAACTTAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACACACATCGTC--CTTCTACTCGACCTCTTCACGGCCTTTCTAAGCCATTCCCGATGTCTACTCGATTAACACGACAAATCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATTATGTACTACCGG-----G-CACGACAGCAGCAGACTACGTATAAAACTGTAGTACTGTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCTTGGAAGTTGAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGCGACTACATGTCTTCCGGATAAACTAAACCTTGTACACGAGTATACATTAGTT----------------------TATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGC----------------TCCGTGTAAAAACCCCGACCCC--CCCACACA---CACACACACTGCA-----------------ACCCCCTGCCGATCGAAGGAGATCATTTCACGACCGCATGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACA-----------TTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTTCAAACCATAACTATAATATATATTGCTCTGACTGACCTGTAC-ATACGAAATTAATGCGTAACACCAGTGGGCAGAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTATGTGATTGTATACTAAATTTTACCCTGTGTAAATGTTTTAACAAGAG-TCCACCAAGCGAGGCATTATACGCCCGAAAGTTTGAATTGAATGAGGGGAAA---------ACATTGAGAT-G-GGGTGTGGAGAAAAAAAGA-AATTTTCGGTTTCAAAACAGGAGGGGAATTTTTTTTAGGGTGG--TTGGGG--TGGGGATTGTGGTTAGGAGG--TG-GGGTTTCTTTACATCATCATGATGAAAAACTATTGAAGGGAGGGACTTTTT--TT-TG-GGGTGG----GGGGATTT--------------------CGGTG---GTGGGGGGGTTAAGGGGGGTGGGGGGT-TTTGGCAGAG----GTGACCAGCGTTGTACTCTGCACATTGACTAATCGCCAACTTCC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----
gi|10 : caagtttgagggctgacaatgttGATCGAGGTACTCAGCTCGGCGGTGAGAACGGGCCATTA--TATAAACGtaagttatgctgtggacataaaacgtaacagacagtttatc
gi|10 : cGTTCTCACCG---CCGAGCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCTGC----------GACCAAG---------------CT---CGACGGAAAAGGACCCCTGCCAAACCTCTAGCGGACCATACTATATCAACTCAAGACCCTTCCGGACTACTTCAAAAC-CACATCCCGTCACACATCtccccgaccggccaaattctgcgaccaagctcgacggaaaaggacccctgccaaacctctagcggaccatactatatcaactcaagacccttccggactacttcaaaaccacatcccgtcacacatc
gi|11 : ccgtttatataatggcccTTTTTTGGGGGG--TGGCGGGTTGGGGATTGTGATTAGGGG---------TTTCTTTACATCGTCTTGTTGAAAAACAAATGAGGA-----------------------TGG----GGGGATTT--------------------CGGTGCGCGAGGGGGGGTTAAGGG-GGTGCGGGGT-CT-GGCAGAG----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGC
gi|12 : gtgCCT-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC-------------------CGACCAAGCTCGACCAGGTGTTTGGTCGGGGGTCTCTACGACGGAAAGGGACATCTGCCAGACCTGCAGTGGACCATACTAGATCGACTCAAGACCCATCCAGACCACTTCAAGAC-
gi|14 : GAGGGGTATTG-------G-GGGTAAATGTGGGGGTT-------------------------G---GAGGGGAGG----GGGTGA------GTATT------------GTGGCT--TGTTGAACTCTATATATCGTCTCATCACCACCTACA--TATATCCTAATATTCAAGTCAATACCTTGAATA-TTTTATGAGTTGTac
gi|15 : tGGTGATGGGGGGA-TTAA-CAG-G----ATGAACAGCGTTGCACTCTGCACATAGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTT---CAGTTTT----gct
gi|16 : tcGGGGGA-TGGGGAAGAGTCTTGTGG--ATTGTGGTACTCTACACATCGTCTCATCACCACCTACA--TATATTCTAAGTTTCAAGTCAATACCTTGAATAGTTTtaaattatgctgtggacacataaagtgacagacagtt
gi|17 : gaCAGTGTTGCACTCTGCACATTGACTCATCGTCACCTACCTATATATTCCAAAGTTCAAATC-ATGCCTTCAACAGTTT
gi|2 : TGGACGCTGCACGCCCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGTATATAATACAT-A-A--TTTCTTTAAGACCGTGCATTTAACG-AAAGACCATACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTT-GGAGGGGAAACCTGCAAGGGCTAAAAAGGAACGTTACGACTCCAGGCTATCGAAAAGGACCATGTCATATGTCAAACTGGCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCCTCCGACCGGCCAAATTCGGCGACCAAGATTGATCAGATGTTAGTTCGGAGGTCTACACGACGGAAAGGAACCCCTGTC------CT---GGACTATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACGTCCTC--CTTCTACTCGACCTTTTCACGACCTTCCAGACCCTTTCCCGATGTCTACCCGATAAACACGACCAGCCTGACCTTTT-------------CTCGACCTCTACCCGACATGT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTG--CAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCTGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGCCTAGATGTCTTCTTGATAAAATAGCCCTTGCACACTAGTATACATGAGTTTACAAGATCGCTACAAGATGTATACCAGACCGCTTCCAGACCATCTGGC-TCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCAACCGCTACCGAC-CAAGGTAAAC-CGCTGCAGACCGGGCAGGACCCCCACCCCCTGCAGACTGGGTGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAAAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTTAAGTGTCCAAATCATAACTATACTTTATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCATTGGGCACAAGTAGCTTTAAGTTTACATAAATGTGATTGTTTTACA-TATTGTATACTAAATTTTAC--------------------------CCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGATGG-GGGTGTGGAGAAAAAAAAATAATTT--GGTTTCAAAACAGGAGGGG-A-TTTTTTTGGGGGGGTATGGTGG--TGGGAATTGTGGTAAGGGAGTCTGTTGTTTTTTTTTCATCGTCTTGTTGAAAAACAATTGAGGGGAGGGATATTGT--TTGTG-GGGTGA----GGGGATTT--------------------CGGTG---GTGGGGATGTTAAGGGTGGTGATGGGT-TTAGGCAGAG----GTGACCAGTGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TA----------TTAAAATAAAAACCTTCAACAGTTTT----GTTGT
gi|3 : TGGACGCTGCCCGCACGCCGTGGGTACTCTAGTGATACTATAAATAAAGCATATAATACAT-A----------T--GACCGCGCATTTAATGCAAAGATTGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTTAATTTTTGAGGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCCTTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTCCTCACCG---CCGATATGAGTACCTCGGTCTCCC--CGACCGGCCAAATTCAACAACCAAAATTGACCAGATGTTTGGTTGGGGGTCTACACTACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCATTCCAGACCACTTCAAGAC-TACTTGCCGACACACATCCTC--TTTCTTCTCGACATTTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCAATTAACACGACCAGCCCGGCCTTTT-------------CTCGACCTCTACCCGACATCT-----------TCCCGACCTATACTCAATCATGTAC----GG-----G-CACAATAACAGCAGATTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACACCATGGACGTTCAGCTGCTGGCATTATATAGACAGATTGATAAAA-------C-TATGTGACTAGATGTCTTCCGGATAAATTAGACCTTGTTCACGAGTAAACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGAAGACCGGACGGGACCCCCACCCCCTGCATACCAAGAGAGATTATTTCACGACCGCATGGTCGAGTTTGATCGAGGTACTCGGATCGGCGGTGAGAACGTACCATTACATACATACGTATATATATTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAATCATAACTATACTATATATTGCTCTGACCGACCTG-ACTATACAAAATAAATGCGTAGCTCCAGTGGGCACAAGTAGCTTCAAGTTTAC----ATGTGATTGTTTTACA-AATTGTGTACTAAATTTTACCCAG------Tt
gi|4 : caagtttgagggctgacaactttTGGACGCTGCCCGCCCGCCGTGGGTACCCTAGTGATAATATAAGTAAAGTATATAATACAT-A-AATT--CTTTAAGACCGTGCATTTAATGCAAAGAC-----------ATATTTGAAAGGTGTGTGTACCTTACTTTCATTGCATTTTTGGAGAGG-------------CTGAAAAGGAACGTTATGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACTGGTCAAATTCGGCGACCAAGATTGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCACGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGAGCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTAACGACCTTCCAGACCTCTTCCCGATGTCTTACCGATTAACTAGACCAGCCTGACCGTTG-------------CTCGATCTCTACCCGACATCTACCCGACATCTACCCGACCTATACCCGATCATGGACTATCGG-----G-CACGATAGCAGCAGACAAAGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACAATCGAAGAAGCAACATCATGGAAGTTGAGCAG--------ATATAGAAAGATTGATAAAA-------A-TATGTGACTAGATGTCTTTCGGATAAACTAGACCTTGTACACGAGTATACACGAGTTTACCAGAGCGCTACAAGATGTATATCACACCGATTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCTGTGTTGAAAGCCTGACTGCTACCGAC-CAAGGGAGAC-CGTTGCAGACCGGGCGGGACGCCCCCCCCC
gi|5 : GGCAGTATATAGACCGATTGATAAAA-------A-TATGTGTCTAGATGTCTTTCGGATAAACTAGACCTTGCATACGAGTACACATGAGTTAACCAGAACGCTACAAGATGTAT-TCA----------AGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAA-TCCGTGTTGAAACCCCGACCCTTATTGAC-CAAGGTAGAC-TGCTGCAGACCGTGTGGGACCCTAACCCAATGCAGACCGATGGAGATTATTTCACGA------------------TCGAGGTACTCATATCGGCAGTGAGA------------------ACGTA-ACATTTCAAATATAC-----------GTGAACC-TGGCCTGTAAAGTGTCCGAACCATAGCTATACTATATATTGCTCTAACCGA--------------AATTAAAGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTATTTTTCA-AACTGTATACTAAATTTTACCCTG------TGTTTTAACTAGAGCTCCGCCAAGCGGGGCATTATAAATCCAAAGGTTTAGATTGAATGAGGGGGGGGGGGGGGGGAAA-TGAGAT-GTAGGTATGGAGAAAAAAGAA-ACTTT--GGTTATAAACCAGGTTGTG-ATTTTTTTTGGGGGGA-----------GGGGATTGTGGTTAGTGGG--TG-AGGTTACTTTACATCGTCTTGTTGAAGAACAATTGAGGGGacaca
gi|5 : TTGGGGGGAGGGG-ATTGTGGTT-AGTGGGTGA----GGTTACTTTACATCGTCTTGTTGAAGAACAATT---GAGGGGGTGTTAATGGTGGTTATGGGT-TTAGGCAGAA----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGCTTT----gtgttaatggtggttatgggtttaggcagaagtgaccagcgttgcactctgcacattgactcatcgccacctacctatattccaagtttcaaatcaataccttcaacagcttttacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|6 : ggcagtatatagaccgattgataaaaatatgtgtctagatgtctttcggataaactagaccttgcatacgagtacacatgagttaaccagaacgctacaagatgtattcaagaccgtctggcttctcgagcgctacacggaaaaaatccgtgttgaaaccccgacccttattgaccaaggtagactgctgcagaccgtgtgggaccctaacccaatgcagaccgatggagattatttcacgatcgaggtactcatatcggcagtgagaacgtaacatttcaaatatacgtgaacctggcctgtaaagtgtccgaaccatagctatactatatattgctctaaccgaaattaaagcgtaactccagtgggcacaagtagcttcaagtttacataaatgtgattatttttcaaactgtatactaaattttaccctgtgttttaactagagctccgccaagcggggcattataaatccaaaggtttagattgaatgaggggggggggggggggaaatgagatgtaggtatggagaaaaaagaaactttggttataaaccaggttgtgattttttGTTCTCACCGACGCCGACCTGAGTACCTTGATTTCCC--CGACCGGCCAAATTCCGCAACAAAGCTCGACCAAATGATTGGTCGGGGATCTACACGACGGAAGGGGACCTCTGCCAGACCTGTAGTGGACCATACTAAATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CCCTTGCCGACACACATCC-CGACTTCTACTCGACCTCTGCTCGACCTTCCAGACCCCTTCTCGATGTCTACCCGATCAACACGACCAGCCCGACCTTTTTTCTTGACTTTTACTCGACCTCTACCCGACTTTT-----------ACCCGACTTCCACCCGAATATGCACGATCGA-----ATCACGAGAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTTAGTATTCAGCTGACCAAAAACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGAtacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|7 : GTTCTCACCG---CCGATCTGAGTACTTCGATTTCCC--CGACCGGCCAAATCCCGCGACCAAGCTCGATCAGGTGTTTGGTCTGGGATCTACACGACGGA--------CCTG----ACCTGTAGTGGACCATACTAGATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACAAACATCC-CGGCTTCTACTCGACCTCTGCTCGATCTTCCCTAGCCCTTCCCGATGTCTACCCGATCAACATGACCAGCCCGACCTTTT-------------CTAGACTTATATCCGACCTCC-----------ACCCGACTTATACCCGACC-TCTACC--CGACTTATG-CACGATCGCAGCA
gi|8 : CGGATTGGTAAAACTATGTGACTATGTGACTAGATGTCTTCCCGATGAACTAGATCTTGTACACGAGT----------TTACCAGAGCGCTACAAGATGTATTTTAGACCGCTTCCA-----TCTGGCTTCTCGAG---------G----------GTGTCGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCTGACCGGGCAGGA----CA-CCCCTGCAGACCGCGGGAGATCATTTCACGA-CGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGcga
gi|9 : CGACTCAAGACCCATCCAGACCACTTCAAGACACAC
gi|9 : -----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----ATAGTTTGTTCAGTATTCAGTTAACCAAAGACTATCGAAGAAGCAAAGTCAAAGACGTTCAGCAGCAGGTATTGTATAGGCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgatagcagcagactaggtataaaactgtaatagtttgttcagtattcagttaaccaaagactatcgaagaagcaaagtcaaagacgttcagcagcaggtattgtataggc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGGGGGGGGGGCTTGCTAATGTAATCAATTTTACTGCATTTGTTATCTAATCAAATTCCAGTATTTCCAGGTCTTCTAAATTAAAACTTTCTACAACCAAGTTTATTGAGCTAACCACAAAACAGTCGTCAACAATTCATCAA
Unaligned ( gi|18 ): AAGTTTGAGGACTGACAACTTTTGGACGCTGCCCGC
Alignments
lowQualScore : 333333333 22222 11 3333333333333 33333333333 111 11111 11111 222222222 1111111 22222222222222 11 1 1111 111 555555555555555555555 555555555 1 111 1 11 1 2222222222 2222222 333333333333333 1111 666666666666666666666 111 1 1111 1111
lowQualScore : 1 888888888 3 2 777 3 55555 0 888 66 4 0 3 1 0 00 2 0 0 4 7 88 0 6666666666666 11111111111 222 44444 5 66666 333333333 1 3 1 3 2 2 3333333 6 6 55 1 77777777777777 0 00 0 9 0 3 2 2 2222 0 3 333 2 3 111111111111111111111 333333333 3 666 3 88 3 7 0 8888888888 4444444 2 777777777777777 7777 555555555555555555555 444 1 0 3 22 5 0 0 1 2222 0 3 77 1 4 7777
lowQualScore : . ......... . . ... . ..... . ... .. . . . . . .. . . . . . .. . ............. ........... ... ..... . ..... ......... . . . . . . ....... . . .. . .............. . .. . . . . . . .... . . ... . . ..................... ......... . ... . .. . . . .......... ....... . ............... .... ..................... ... . . . .. . . . . .... . . .. . . ....
lowQualScore : 0 888888888 2 5 555 2 88888 8 888 99 5 2 0 1 1 99 5 1 2 4 3 33 3 7777777777777 77777777777 555 33333 7 77777 333333333 8 5 0 5 5 5 5555555 7 7 00 0 44444444444444 6 00 8 2 8 2 5 5 5555 2 2 222 5 5 111111111111111111111 333333333 3 777 3 33 3 3 2 5555555555 0000000 5 222222222222222 0000 888888888888888888888 000 4 8 2 44 7 9 7 4 1111 7 1 99 6 3 0000
consensus : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
Reference ( family-1843 ) : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
gi|1 : TGGACGCTGCCCGCGCTCCATTTGCGCTCTAGTGATACTATAAGTAAAGCATATACTACATTATA--T--CTTTAAGACTGTGCATTTAATGCAAAGACCGTACATGGATATATCTGAAAGGTTTATATACCTTACTTTCATTGCATTTTTGGAAGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCTAGATTTACCAGATGTTTAGTCGGGGGTCTACAAGTCGGAAAGGGACCTTTGCCAAA------------CATACTATATCAACTTAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACACACATCGTC--CTTCTACTCGACCTCTTCACGGCCTTTCTAAGCCATTCCCGATGTCTACTCGATTAACACGACAAATCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATTATGTACTACCGG-----G-CACGACAGCAGCAGACTACGTATAAAACTGTAGTACTGTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCTTGGAAGTTGAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGCGACTACATGTCTTCCGGATAAACTAAACCTTGTACACGAGTATACATTAGTT----------------------TATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGC----------------TCCGTGTAAAAACCCCGACCCC--CCCACACA---CACACACACTGCA-----------------ACCCCCTGCCGATCGAAGGAGATCATTTCACGACCGCATGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACA-----------TTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTTCAAACCATAACTATAATATATATTGCTCTGACTGACCTGTAC-ATACGAAATTAATGCGTAACACCAGTGGGCAGAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTATGTGATTGTATACTAAATTTTACCCTGTGTAAATGTTTTAACAAGAG-TCCACCAAGCGAGGCATTATACGCCCGAAAGTTTGAATTGAATGAGGGGAAA---------ACATTGAGAT-G-GGGTGTGGAGAAAAAAAGA-AATTTTCGGTTTCAAAACAGGAGGGGAATTTTTTTTAGGGTGG--TTGGGG--TGGGGATTGTGGTTAGGAGG--TG-GGGTTTCTTTACATCATCATGATGAAAAACTATTGAAGGGAGGGACTTTTT--TT-TG-GGGTGG----GGGGATTT--------------------CGGTG---GTGGGGGGGTTAAGGGGGGTGGGGGGT-TTTGGCAGAG----GTGACCAGCGTTGTACTCTGCACATTGACTAATCGCCAACTTCC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----
gi|10 : caagtttgagggctgacaatgttGATCGAGGTACTCAGCTCGGCGGTGAGAACGGGCCATTA--TATAAACGtaagttatgctgtggacataaaacgtaacagacagtttatc
gi|10 : cGTTCTCACCG---CCGAGCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCTGC----------GACCAAG---------------CT---CGACGGAAAAGGACCCCTGCCAAACCTCTAGCGGACCATACTATATCAACTCAAGACCCTTCCGGACTACTTCAAAAC-CACATCCCGTCACACATCtccccgaccggccaaattctgcgaccaagctcgacggaaaaggacccctgccaaacctctagcggaccatactatatcaactcaagacccttccggactacttcaaaaccacatcccgtcacacatc
gi|11 : ccgtttatataatggcccTTTTTTGGGGGG--TGGCGGGTTGGGGATTGTGATTAGGGG---------TTTCTTTACATCGTCTTGTTGAAAAACAAATGAGGA-----------------------TGG----GGGGATTT--------------------CGGTGCGCGAGGGGGGGTTAAGGG-GGTGCGGGGT-CT-GGCAGAG----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGC
gi|12 : gtgCCT-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC-------------------CGACCAAGCTCGACCAGGTGTTTGGTCGGGGGTCTCTACGACGGAAAGGGACATCTGCCAGACCTGCAGTGGACCATACTAGATCGACTCAAGACCCATCCAGACCACTTCAAGAC-
gi|14 : GAGGGGTATTG-------G-GGGTAAATGTGGGGGTT-------------------------G---GAGGGGAGG----GGGTGA------GTATT------------GTGGCT--TGTTGAACTCTATATATCGTCTCATCACCACCTACA--TATATCCTAATATTCAAGTCAATACCTTGAATA-TTTTATGAGTTGTac
gi|15 : tGGTGATGGGGGGA-TTAA-CAG-G----ATGAACAGCGTTGCACTCTGCACATAGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTT---CAGTTTT----gct
gi|16 : tcGGGGGA-TGGGGAAGAGTCTTGTGG--ATTGTGGTACTCTACACATCGTCTCATCACCACCTACA--TATATTCTAAGTTTCAAGTCAATACCTTGAATAGTTTtaaattatgctgtggacacataaagtgacagacagtt
gi|17 : gaCAGTGTTGCACTCTGCACATTGACTCATCGTCACCTACCTATATATTCCAAAGTTCAAATC-ATGCCTTCAACAGTTT
gi|2 : TGGACGCTGCACGCCCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGTATATAATACAT-A-A--TTTCTTTAAGACCGTGCATTTAACG-AAAGACCATACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTT-GGAGGGGAAACCTGCAAGGGCTAAAAAGGAACGTTACGACTCCAGGCTATCGAAAAGGACCATGTCATATGTCAAACTGGCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCCTCCGACCGGCCAAATTCGGCGACCAAGATTGATCAGATGTTAGTTCGGAGGTCTACACGACGGAAAGGAACCCCTGTC------CT---GGACTATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACGTCCTC--CTTCTACTCGACCTTTTCACGACCTTCCAGACCCTTTCCCGATGTCTACCCGATAAACACGACCAGCCTGACCTTTT-------------CTCGACCTCTACCCGACATGT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTG--CAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCTGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGCCTAGATGTCTTCTTGATAAAATAGCCCTTGCACACTAGTATACATGAGTTTACAAGATCGCTACAAGATGTATACCAGACCGCTTCCAGACCATCTGGC-TCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCAACCGCTACCGAC-CAAGGTAAAC-CGCTGCAGACCGGGCAGGACCCCCACCCCCTGCAGACTGGGTGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAAAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTTAAGTGTCCAAATCATAACTATACTTTATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCATTGGGCACAAGTAGCTTTAAGTTTACATAAATGTGATTGTTTTACA-TATTGTATACTAAATTTTAC--------------------------CCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGATGG-GGGTGTGGAGAAAAAAAAATAATTT--GGTTTCAAAACAGGAGGGG-A-TTTTTTTGGGGGGGTATGGTGG--TGGGAATTGTGGTAAGGGAGTCTGTTGTTTTTTTTTCATCGTCTTGTTGAAAAACAATTGAGGGGAGGGATATTGT--TTGTG-GGGTGA----GGGGATTT--------------------CGGTG---GTGGGGATGTTAAGGGTGGTGATGGGT-TTAGGCAGAG----GTGACCAGTGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TA----------TTAAAATAAAAACCTTCAACAGTTTT----GTTGT
gi|3 : TGGACGCTGCCCGCACGCCGTGGGTACTCTAGTGATACTATAAATAAAGCATATAATACAT-A----------T--GACCGCGCATTTAATGCAAAGATTGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTTAATTTTTGAGGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCCTTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTCCTCACCG---CCGATATGAGTACCTCGGTCTCCC--CGACCGGCCAAATTCAACAACCAAAATTGACCAGATGTTTGGTTGGGGGTCTACACTACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCATTCCAGACCACTTCAAGAC-TACTTGCCGACACACATCCTC--TTTCTTCTCGACATTTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCAATTAACACGACCAGCCCGGCCTTTT-------------CTCGACCTCTACCCGACATCT-----------TCCCGACCTATACTCAATCATGTAC----GG-----G-CACAATAACAGCAGATTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACACCATGGACGTTCAGCTGCTGGCATTATATAGACAGATTGATAAAA-------C-TATGTGACTAGATGTCTTCCGGATAAATTAGACCTTGTTCACGAGTAAACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGAAGACCGGACGGGACCCCCACCCCCTGCATACCAAGAGAGATTATTTCACGACCGCATGGTCGAGTTTGATCGAGGTACTCGGATCGGCGGTGAGAACGTACCATTACATACATACGTATATATATTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAATCATAACTATACTATATATTGCTCTGACCGACCTG-ACTATACAAAATAAATGCGTAGCTCCAGTGGGCACAAGTAGCTTCAAGTTTAC----ATGTGATTGTTTTACA-AATTGTGTACTAAATTTTACCCAG------Tt
gi|4 : caagtttgagggctgacaactttTGGACGCTGCCCGCCCGCCGTGGGTACCCTAGTGATAATATAAGTAAAGTATATAATACAT-A-AATT--CTTTAAGACCGTGCATTTAATGCAAAGAC-----------ATATTTGAAAGGTGTGTGTACCTTACTTTCATTGCATTTTTGGAGAGG-------------CTGAAAAGGAACGTTATGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACTGGTCAAATTCGGCGACCAAGATTGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCACGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGAGCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTAACGACCTTCCAGACCTCTTCCCGATGTCTTACCGATTAACTAGACCAGCCTGACCGTTG-------------CTCGATCTCTACCCGACATCTACCCGACATCTACCCGACCTATACCCGATCATGGACTATCGG-----G-CACGATAGCAGCAGACAAAGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACAATCGAAGAAGCAACATCATGGAAGTTGAGCAG--------ATATAGAAAGATTGATAAAA-------A-TATGTGACTAGATGTCTTTCGGATAAACTAGACCTTGTACACGAGTATACACGAGTTTACCAGAGCGCTACAAGATGTATATCACACCGATTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCTGTGTTGAAAGCCTGACTGCTACCGAC-CAAGGGAGAC-CGTTGCAGACCGGGCGGGACGCCCCCCCCC
gi|5 : GGCAGTATATAGACCGATTGATAAAA-------A-TATGTGTCTAGATGTCTTTCGGATAAACTAGACCTTGCATACGAGTACACATGAGTTAACCAGAACGCTACAAGATGTAT-TCA----------AGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAA-TCCGTGTTGAAACCCCGACCCTTATTGAC-CAAGGTAGAC-TGCTGCAGACCGTGTGGGACCCTAACCCAATGCAGACCGATGGAGATTATTTCACGA------------------TCGAGGTACTCATATCGGCAGTGAGA------------------ACGTA-ACATTTCAAATATAC-----------GTGAACC-TGGCCTGTAAAGTGTCCGAACCATAGCTATACTATATATTGCTCTAACCGA--------------AATTAAAGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTATTTTTCA-AACTGTATACTAAATTTTACCCTG------TGTTTTAACTAGAGCTCCGCCAAGCGGGGCATTATAAATCCAAAGGTTTAGATTGAATGAGGGGGGGGGGGGGGGGAAA-TGAGAT-GTAGGTATGGAGAAAAAAGAA-ACTTT--GGTTATAAACCAGGTTGTG-ATTTTTTTTGGGGGGA-----------GGGGATTGTGGTTAGTGGG--TG-AGGTTACTTTACATCGTCTTGTTGAAGAACAATTGAGGGGacaca
gi|5 : TTGGGGGGAGGGG-ATTGTGGTT-AGTGGGTGA----GGTTACTTTACATCGTCTTGTTGAAGAACAATT---GAGGGGGTGTTAATGGTGGTTATGGGT-TTAGGCAGAA----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGCTTT----gtgttaatggtggttatgggtttaggcagaagtgaccagcgttgcactctgcacattgactcatcgccacctacctatattccaagtttcaaatcaataccttcaacagcttttacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|6 : ggcagtatatagaccgattgataaaaatatgtgtctagatgtctttcggataaactagaccttgcatacgagtacacatgagttaaccagaacgctacaagatgtattcaagaccgtctggcttctcgagcgctacacggaaaaaatccgtgttgaaaccccgacccttattgaccaaggtagactgctgcagaccgtgtgggaccctaacccaatgcagaccgatggagattatttcacgatcgaggtactcatatcggcagtgagaacgtaacatttcaaatatacgtgaacctggcctgtaaagtgtccgaaccatagctatactatatattgctctaaccgaaattaaagcgtaactccagtgggcacaagtagcttcaagtttacataaatgtgattatttttcaaactgtatactaaattttaccctgtgttttaactagagctccgccaagcggggcattataaatccaaaggtttagattgaatgaggggggggggggggggaaatgagatgtaggtatggagaaaaaagaaactttggttataaaccaggttgtgattttttGTTCTCACCGACGCCGACCTGAGTACCTTGATTTCCC--CGACCGGCCAAATTCCGCAACAAAGCTCGACCAAATGATTGGTCGGGGATCTACACGACGGAAGGGGACCTCTGCCAGACCTGTAGTGGACCATACTAAATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CCCTTGCCGACACACATCC-CGACTTCTACTCGACCTCTGCTCGACCTTCCAGACCCCTTCTCGATGTCTACCCGATCAACACGACCAGCCCGACCTTTTTTCTTGACTTTTACTCGACCTCTACCCGACTTTT-----------ACCCGACTTCCACCCGAATATGCACGATCGA-----ATCACGAGAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTTAGTATTCAGCTGACCAAAAACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGAtacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|7 : GTTCTCACCG---CCGATCTGAGTACTTCGATTTCCC--CGACCGGCCAAATCCCGCGACCAAGCTCGATCAGGTGTTTGGTCTGGGATCTACACGACGGA--------CCTG----ACCTGTAGTGGACCATACTAGATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACAAACATCC-CGGCTTCTACTCGACCTCTGCTCGATCTTCCCTAGCCCTTCCCGATGTCTACCCGATCAACATGACCAGCCCGACCTTTT-------------CTAGACTTATATCCGACCTCC-----------ACCCGACTTATACCCGACC-TCTACC--CGACTTATG-CACGATCGCAGCA
gi|8 : CGGATTGGTAAAACTATGTGACTATGTGACTAGATGTCTTCCCGATGAACTAGATCTTGTACACGAGT----------TTACCAGAGCGCTACAAGATGTATTTTAGACCGCTTCCA-----TCTGGCTTCTCGAG---------G----------GTGTCGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCTGACCGGGCAGGA----CA-CCCCTGCAGACCGCGGGAGATCATTTCACGA-CGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGcga
gi|9 : CGACTCAAGACCCATCCAGACCACTTCAAGACACAC
gi|9 : -----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----ATAGTTTGTTCAGTATTCAGTTAACCAAAGACTATCGAAGAAGCAAAGTCAAAGACGTTCAGCAGCAGGTATTGTATAGGCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgatagcagcagactaggtataaaactgtaatagtttgttcagtattcagttaaccaaagactatcgaagaagcaaagtcaaagacgttcagcagcaggtattgtataggc
blockSeqs : C AATTT A C CAT T AAACC ACG TC T C C C A T GA TTCTTGACTTTTA ACCCGACATCT CAT CTTAT T . CTATGTGAC T T T A G G AAAAAAA . . CC C CCGCATGGTCGAGT CC A T T C C TAC A AT C A TGTTTTAACTAGAGC GGGGGGGGG . GG T . . T TGGCGGGT GTCTGTT T GATTGTGGTTAGT ATGT TTACATCGTCTTGTTGAAGAA CGC A T CG A A A TCTT T TA A G ATGA
blockSeqs : A AAATT A C TGC T AAAC . . G A T G . T GG . . TAT . . . A A T G A G G AAAAAAA . . CC C CGCACGATCGAGT CA T T T C C ACT A AA C T . . . GT . . . . TATGGTGG GTGA G ATATTGTTTGTG . T . A T GG . G A . C . T G .
blockSeqs : C A . . . . . . . A A T C . T . . . GAT . . . C T T G A C G AAAAAA . . CG C C . T . . . . . . AA . . . . . GTATTGG . T . T T GG . A A . A . T C .
blockSeqs : . . G A T C . . . . . C . . . A C A A T G G AAAAAA . . CC T . . . . . . . A T AT . A A . C . G C .
blockSeqs : . . C C C C . . . . . . . . . A . T G . . . . . . . . . AT . . . . T . T C
blockSeqs : . . C C C G . . . . . . . . T . . .
blockSeqs : . . . . . G . T
blockSeqs : .
blockSeqCons : ***** AAAAAA* CC C************* GATTGTTG*******
originalCons : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCACGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTATTGT--TT-TG-GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
finalCons : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAA-TCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGATTGTTG-------GGGTGA----GGGGATTT--------------------CGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGGGGGGGGGGCTTGCTAATGTAATCAATTTTACTGCATTTGTTATCTAATCAAATTCCAGTATTTCCAGGTCTTCTAAATTAAAACTTTCTACAACCAAGTTTATTGAGCTAACCACAAAACAGTCGTCAACAATTCATCAA
Unaligned ( gi|18 ): AAGTTTGAGGACTGACAACTTTTGGACGCTGCCCGC
Alignments
lowQualScore : 1111111111111
lowQualScore : 333333333 22222 11 3333333333333 33333333333 11111 11111 222222222 11 2222222222222 11 1 1111 111 555555555555555555555 555555555 1 111 1 11 1 2222222222 2222222 88888888888888888888888888888 11111 1 1111 1111
lowQualScore : 1 888888888 3 2 777 3 55555 0 888 66 4 0 3 1 0 00 2 0 0 4 7 88 0 6666666666666 11111111111 888 44444 5 66666 333333333 1 3 1 3 2 2 66 6 6 55 1 9999999999999 0 00 0 9 0 3 2 2 2222 0 3 333 2 3 111111111111111111111 333333333 3 666 3 88 3 7 0 8888888888 4444444 2 66666666666666666666666666666 66 55555 1 0 1 6666666 77 0 0 1 2222 0 3 77 1 4 7777
lowQualScore : . ......... . . ... . ..... . ... .. . . . . . .. . . . . . .. . ............. ........... ... ..... . ..... ......... . . . . . . .. . . .. . ............. . .. . . . . . . .... . . ... . . ..................... ......... . ... . .. . . . .......... ....... . ............................. .. ..... . . . ....... .. . . . .... . . .. . . ....
lowQualScore : 0 888888888 2 5 555 2 88888 8 888 99 5 2 0 1 1 99 5 1 2 4 3 33 3 7777777777777 77777777777 333 33333 7 77777 333333333 8 5 0 5 5 5 55 7 7 00 0 0000000000000 6 00 8 2 8 2 5 5 5555 2 2 222 5 5 111111111111111111111 333333333 3 777 3 33 3 3 2 5555555555 0000000 5 22222222222222222222222222222 44 22222 4 8 0 2222222 66 9 7 4 1111 7 1 99 6 3 0000
consensus : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGACCGCATG-TCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGGTA----TTGT---TGGGGTGG----GGGGATTTCGGTG---GNGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
Reference ( family-1843 ) : TGGACGCTGCCCGCNCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGCATATAATACAT-A-A--T--CTTTAAGACCGTGCATTTAATGCAAAGACCGTACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTTTGGAGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCAAGATCGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCGATTAACACGACCAGCCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGACTAGATGTCTTCCGGATAAACTAGACCTTGTACACGAGTATACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCAGACCGGGCGGGACCCCCACCCCCTGCAGACCGAGGGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAACCATAACTATACTATATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTACG-AATTGTATACTAAATTTTACCCTG------TGTTTTAAC-AGAG-TCCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGAT-G-GGGTGTGGAGAAAAAAAAA-AATTT--GGTTTCAAAACAGGAGGGG-ATTTTTTTTGGGGGGG--TGGCGG--TGGGGATTGTGGTTAGGGGG--TG-NGGTTTCTTTACATCGTCTTGTTGAAAAACAATTGAGGGGAGGGG-A----TTGT---TGGGGTGA----GGGGATTTCGGTG---GAGGGGGGGTTAAGGGTGGTGGGGGGT-TTAGGCAGAG----GTGACCAGCGTTGCACTCTGCACATCGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----GTTGT
gi|1 : TGGACGCTGCCCGCGCTCCATTTGCGCTCTAGTGATACTATAAGTAAAGCATATACTACATTATA--T--CTTTAAGACTGTGCATTTAATGCAAAGACCGTACATGGATATATCTGAAAGGTTTATATACCTTACTTTCATTGCATTTTTGGAAGGGGA---TGCAAGGGCTGAAAAGGAACGTTACGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCGGCGACCTAGATTTACCAGATGTTTAGTCGGGGGTCTACAAGTCGGAAAGGGACCTTTGCCAAA------------CATACTATATCAACTTAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACACACATCGTC--CTTCTACTCGACCTCTTCACGGCCTTTCTAAGCCATTCCCGATGTCTACTCGATTAACACGACAAATCCGACCTTTT-------------CTCGACCTCTACCCGACATCT-----------ACCCGACCTATACCCGATTATGTACTACCGG-----G-CACGACAGCAGCAGACTACGTATAAAACTGTAGTACTGTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACATCTTGGAAGTTGAGCAGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGCGACTACATGTCTTCCGGATAAACTAAACCTTGTACACGAGTATACATTAGTT----------------------TATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGC----------------TCCGTGTAAAAACCCCGACCCC--CCCACACA---CACACACACTGCA-----------------ACCCCCTGCCGATCGAAGGAGATCATTTCACGACCGCATGATCGAGTTTGATCGAGGTACTCAGATCGGCGGTGAGAACGTACCATTACCTACA-----------TTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTTCAAACCATAACTATAATATATATTGCTCTGACTGACCTGTAC-ATACGAAATTAATGCGTAACACCAGTGGGCAGAAGTAGCTTCAAGTTTACATAAATGTGATTGTTTTATGTGATTGTATACTAAATTTTACCCTGTGTAAATGTTTTAACAAGAG-TCCACCAAGCGAGGCATTATACGCCCGAAAGTTTGAATTGAATGAGGGGAAA---------ACATTGAGAT-G-GGGTGTGGAGAAAAAAAGA-AATTTTCGGTTTCAAAACAGGAGGGGAATTTTTTTTAGGGTGG--TTGGGG--TGGGGATTGTGGTTAGGAGG--TG-GGGTTTCTTTACATCATCATGATGAAAAACTATTGAAGGGA-GGG-ACTTTTTTT---TGGGGTGG----GGGGATTTCGGTG---GTGGGGGGGTTAAGGGGGGTGGGGGGT-TTTGGCAGAG----GTGACCAGCGTTGTACTCTGCACATTGACTAATCGCCAACTTCC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGTTTT----
gi|10 : caagtttgagggctgacaatgttGATCGAGGTACTCAGCTCGGCGGTGAGAACGGGCCATTA--TATAAACGtaagttatgctgtggacataaaacgtaacagacagtttatc
gi|10 : cGTTCTCACCG---CCGAGCTGAGTACCTCGATCTCCC--CGACCGGCCAAATTCTGC----------GACCAAG---------------CT---CGACGGAAAAGGACCCCTGCCAAACCTCTAGCGGACCATACTATATCAACTCAAGACCCTTCCGGACTACTTCAAAAC-CACATCCCGTCACACATCtccccgaccggccaaattctgcgaccaagctcgacggaaaaggacccctgccaaacctctagcggaccatactatatcaactcaagacccttccggactacttcaaaaccacatcccgtcacacatc
gi|11 : ccgtttatataatggcccTTTTTTGGGGGG--TGGCGGGTTGGGGATTGTGATTAGGGG---------TTTCTTTACATCGTCTTGTTGAAAAACAAATGAGGA------------------------TGG----GGGGATTTCGGTGCGCGAGGGGGGGTTAAGGG-GGTGCGGGGT-CT-GGCAGAG----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGC
gi|12 : gtgCCT-GTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC-------------------CGACCAAGCTCGACCAGGTGTTTGGTCGGGGGTCTCTACGACGGAAAGGGACATCTGCCAGACCTGCAGTGGACCATACTAGATCGACTCAAGACCCATCCAGACCACTTCAAGAC-
gi|14 : GAGGGGTA----TTG-----GGGGTAAATGTGGGGGTT-----G---GAGGGGAGG----GGGTGA------GTATT------------GTGGCT--TGTTGAACTCTATATATCGTCTCATCACCACCTACA--TATATCCTAATATTCAAGTCAATACCTTGAATA-TTTTATGAGTTGTac
gi|15 : tGGTGATGGGGGGA-TTAA-CAG-G----ATGAACAGCGTTGCACTCTGCACATAGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTT---CAGTTTT----gct
gi|16 : tcGGGGGA-TGGGGAAGAGTCTTGTGG--ATTGTGGTACTCTACACATCGTCTCATCACCACCTACA--TATATTCTAAGTTTCAAGTCAATACCTTGAATAGTTTtaaattatgctgtggacacataaagtgacagacagtt
gi|17 : gaCAGTGTTGCACTCTGCACATTGACTCATCGTCACCTACCTATATATTCCAAAGTTCAAATC-ATGCCTTCAACAGTTT
gi|2 : TGGACGCTGCACGCCCGCCGTGGGTACTCTAGTGATACTATAAGTAAAGTATATAATACAT-A-A--TTTCTTTAAGACCGTGCATTTAACG-AAAGACCATACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTGCATTTT-GGAGGGGAAACCTGCAAGGGCTAAAAAGGAACGTTACGACTCCAGGCTATCGAAAAGGACCATGTCATATGTCAAACTGGCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCCTCCGACCGGCCAAATTCGGCGACCAAGATTGATCAGATGTTAGTTCGGAGGTCTACACGACGGAAAGGAACCCCTGTC------CT---GGACTATACTATATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACGTCCTC--CTTCTACTCGACCTTTTCACGACCTTCCAGACCCTTTCCCGATGTCTACCCGATAAACACGACCAGCCTGACCTTTT-------------CTCGACCTCTACCCGACATGT-----------ACCCGACCTATACCCGATCATGTACCATCGG-----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTG--CAAACACTATCGAAGAAGCAACATCATGGAAGTTCAGCTGCAGGCATTATATAGACAGATTGATAAAA-------A-TATGTGCCTAGATGTCTTCTTGATAAAATAGCCCTTGCACACTAGTATACATGAGTTTACAAGATCGCTACAAGATGTATACCAGACCGCTTCCAGACCATCTGGCT-CTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCAACCGCTACCGAC-CAAGGTAAAC-CGCTGCAGACCGGGCAGGACCCCCACCCCCTGCAGACTGGGTGAGATTATTTCACGAC-------------TTGATCGAGGTACTCAGATCGGCGGTGAAAACGTACCATTACCTACATACGTATATATTTTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTTAAGTGTCCAAATCATAACTATACTTTATATTGCTCTGACCGACCTGTAC-ATACGAAATTAATGCGTAACTCCATTGGGCACAAGTAGCTTTAAGTTTACATAAATGTGATTGTTTTACA-TATTGTATACTAAATTTTAC--------------------------CCGCCAAGCGGGGCATTATACGCCCGAAGGTTTAGATTGAATGAGGGGAAA---------AAA-TGAGATGG-GGGTGTGGAGAAAAAAAAATAATTT--GGTTTCAAAACAGGAGGGG-A-TTTTTTTGGGGGGGTATGGTGG--TGGGAATTGTGGTAAGGGAGTCTGTTGTTTTTTTTTCATCGTCTTGTTGAAAAACAATTGAGGGGAGGGATA----TTGTTTGTGGGGTGA----GGGGATTTCGGTG---GTGGGGATGTTAAGGGTGGTGATGGGT-TTAGGCAGAG----GTGACCAGTGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TA----------TTAAAATAAAAACCTTCAACAGTTTT----GTTGT
gi|3 : TGGACGCTGCCCGCACGCCGTGGGTACTCTAGTGATACTATAAATAAAGCATATAATACAT-A----------T--GACCGCGCATTTAATGCAAAGATTGCACATGGATATATTTGAAAGGTTTATGTACCTTACTTTCATTTAATTTTTGAGGGGGAAAC-TGCAAGGGCTGAAAAGGAACGTTACGACTCCCTTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTCCTCACCG---CCGATATGAGTACCTCGGTCTCCC--CGACCGGCCAAATTCAACAACCAAAATTGACCAGATGTTTGGTTGGGGGTCTACACTACGGAAAGGGACCCCTGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGACCATTCCAGACCACTTCAAGAC-TACTTGCCGACACACATCCTC--TTTCTTCTCGACATTTTCACGACCTTCCAGACCCCTTCCCGATGTCTACCCAATTAACACGACCAGCCCGGCCTTTT-------------CTCGACCTCTACCCGACATCT-----------TCCCGACCTATACTCAATCATGTA----CGG-----G-CACAATAACAGCAGATTAGGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACTATCGAAGAAGCAACACCATGGACGTTCAGCTGCTGGCATTATATAGACAGATTGATAAAA-------C-TATGTGACTAGATGTCTTCCGGATAAATTAGACCTTGTTCACGAGTAAACATGAGTTTACCAGAGCGCTACAAGATGTATATCAGACCGCTTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCCGTGTTGAAACCCCGACCGCTACCGAC-CAAGGCAGAC-CGCTGAAGACCGGACGGGACCCCCACCCCCTGCATACCAAGAGAGATTATTTCACGACCGCATGGTCGAGTTTGATCGAGGTACTCGGATCGGCGGTGAGAACGTACCATTACATACATACGTATATATATTTACTTCACTGACGGTCTCGGTGAACCCTGGCCTGTAAAGTGTCCAAATCATAACTATACTATATATTGCTCTGACCGACCTG-ACTATACAAAATAAATGCGTAGCTCCAGTGGGCACAAGTAGCTTCAAGTTTAC----ATGTGATTGTTTTACA-AATTGTGTACTAAATTTTACCCAG------Tt
gi|4 : caagtttgagggctgacaactttTGGACGCTGCCCGCCCGCCGTGGGTACCCTAGTGATAATATAAGTAAAGTATATAATACAT-A-AATT--CTTTAAGACCGTGCATTTAATGCAAAGAC-----------ATATTTGAAAGGTGTGTGTACCTTACTTTCATTGCATTTTTGGAGAGG-------------CTGAAAAGGAACGTTATGACTCCAGTCGACCGAAATGGACCATGTCATATGTCAAACTGCCTAGTTCTCACCG---CCGATCTGAGTACCTCGATCTCCC--CGACTGGTCAAATTCGGCGACCAAGATTGACCAGATGTTTGGTCGGGGGTCTACACGACGGAAAGGGACCCACGCCAAACCTCTAGTGGACCATACTATATCAACTCAAGAGCCTTCCAGACCACTTCAAGAC-CACTTGCCGACACACATCCTC--CTTCTACTCGACCTCTTAACGACCTTCCAGACCTCTTCCCGATGTCTTACCGATTAACTAGACCAGCCTGACCGTTG-------------CTCGATCTCTACCCGACATCTACCCGACATCTACCCGACCTATACCCGATCATGGACTATCGG-----G-CACGATAGCAGCAGACAAAGTATAAAACTGTA-----GTATTTTGTTCGGTATTTAGTTGACCAAACACAATCGAAGAAGCAACATCATGGAAGTTGAGCAG--------ATATAGAAAGATTGATAAAA-------A-TATGTGACTAGATGTCTTTCGGATAAACTAGACCTTGTACACGAGTATACACGAGTTTACCAGAGCGCTACAAGATGTATATCACACCGATTCCAGACCGTCTGGCTTCTCGAGCGCTACACGGAAAAAAATCTGTGTTGAAAGCCTGACTGCTACCGAC-CAAGGGAGAC-CGTTGCAGACCGGGCGGGACGCCCCCCCCC
gi|5 : GGCAGTATATAGACCGATTGATAAAA-------A-TATGTGTCTAGATGTCTTTCGGATAAACTAGACCTTGCATACGAGTACACATGAGTTAACCAGAACGCTACAAGATGTAT-TCA----------AGACCGTCTGGCTTCTCGAGCGCTACACGG-AAAAAATCCGTGTTGAAACCCCGACCCTTATTGAC-CAAGGTAGAC-TGCTGCAGACCGTGTGGGACCCTAACCCAATGCAGACCGATGGAGATTATTTCACGA------------------TCGAGGTACTCATATCGGCAGTGAGA------------------ACGTA-ACATTTCAAATATAC-----------GTGAACC-TGGCCTGTAAAGTGTCCGAACCATAGCTATACTATATATTGCTCTAACCGA--------------AATTAAAGCGTAACTCCAGTGGGCACAAGTAGCTTCAAGTTTACATAAATGTGATTATTTTTCA-AACTGTATACTAAATTTTACCCTG------TGTTTTAACTAGAGCTCCGCCAAGCGGGGCATTATAAATCCAAAGGTTTAGATTGAATGAGGGGGGGGGGGGGGGGAAA-TGAGAT-GTAGGTATGGAGAAAAAAGAA-ACTTT--GGTTATAAACCAGGTTGTG-ATTTTTTTTGGGGGGA-----------GGGGATTGTGGTTAGTGGG--TG-AGGTTACTTTACATCGTCTTGTTGAAGAACAATTGAGGGGG-----------TGT---T--------------AAT---GGT-----------GGTTATGGGT-----------TTAGGCAGAA----GTGACCAGCGTTGCACTCTGCACATTGACTCATCGCCACCTACC--TATATTCCAAGTTTCAAATCAATACCTTCAACAGCTTT----acaca
gi|6 : GTTCTCACCGACGCCGACCTGAGTACCTTGATTTCCC--CGACCGGCCAAATTCCGCAACAAAGCTCGACCAAATGATTGGTCGGGGATCTACACGACGGAAGGGGACCTCTGCCAGACCTGTAGTGGACCATACTAAATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-CCCTTGCCGACACACATCC-CGACTTCTACTCGACCTCTGCTCGACCTTCCAGACCCCTTCTCGATGTCTACCCGATCAACACGACCAGCCCGACCTTTTTTCTTGACTTTTACTCGACCTCTACCCGACTTTT-----------ACCCGACTTCCACCCGAATATGCACGATCGA-----ATCACGAGAGCAGCAGACTAGGTATAAAACTGTA-----GTATTTTGTTTAGTATTCAGCTGACCAAAAACTATCGAAGAAGCAACATCATGGAAGTTCAGCAGCAGGCATTATATAGAtacgttatgctgtggacacaaaaagtgacagaaagtttctc
gi|7 : GTTCTCACCG---CCGATCTGAGTACTTCGATTTCCC--CGACCGGCCAAATCCCGCGACCAAGCTCGATCAGGTGTTTGGTCTGGGATCTACACGACGGA--------CCTG----ACCTGTAGTGGACCATACTAGATCAACTCAAGACCCTTCCAGACCACTTCAAGAC-AACTTGCCGACAAACATCC-CGGCTTCTACTCGACCTCTGCTCGATCTTCCCTAGCCCTTCCCGATGTCTACCCGATCAACATGACCAGCCCGACCTTTT-------------CTAGACTTATATCCGACCTCC-----------ACCCGACTTATACCCGACC-TCTACC--CGACTTATG-CACGATCGCAGCA
gi|8 : CGGATTGGTAAAACTATGTGACTATGTGACTAGATGTCTTCCCGATGAACTAGATCTTGTACACGAGT----------TTACCAGAGCGCTACAAGATGTATTTTAGACCGCTTCCA-----TCTGGCTTCTCGAG---------G----------GTGTCGAAACCCCGACCGCTACCGAC-CAAGGTAGAC-CGCTGCTGACCGGGCAGGA----CA-CCCCTGCAGACCGCGGGAGATCATTTCACGACGCACGATCGAGT-TTGATCGAGGTACTCAGATCGGCGGTGAGAACGcga
gi|9 : CGACTCAAGACCCATCCAGACCACTTCAAGACACAC
gi|9 : -----G-CACGATAGCAGCAGACTAGGTATAAAACTGTA-----ATAGTTTGTTCAGTATTCAGTTAACCAAAGACTATCGAAGAAGCAAAGTCAAAGACGTTCAGCAGCAGGTATTGTATAGGCatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgatagcagcagactaggtataaaactgtaatagtttgttcagtattcagttaaccaaagactatcgaagaagcaaagtcaaagacgttcagcagcaggtattgtataggc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGGGGGGGGGGCTTGCTAATGTAATCAATTTTACTGCATTTGTTATCTAATCAAATTCCAGTATTTCCAGGTCTTCTAAATTAAAACTTTCTACAACCAAGTTTATTGAGCTAACCACAAAACAGTCGTCAACAATTCATCAA
Unaligned ( gi|18 ): AAGTTTGAGGACTGACAACTTTTGGACGCTGCCCGC