lowQualScore : 22222222222222222222222222222222222222222222222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 55 00000000000000000000000000000000000000000000000000000 1 444444 1 88888888888888888888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11 9999999999999999 2222 444444444444 1111 1111 4444444444444 1 111 1 999999999999999999999999999999999999999999999 1 2222222222 333333333 2222 9999999999999999999999999999999 444444444444444444 222222 111 1 444 111 2222 11 11 33333333333 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 22222222222 11111111111 1 2 1111111 1111 333333333333333333333333333333333333333333333333333333 2222222 1 9999999999999999999999 2222222 111 222 11 66666666666 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 777777777777777 1 222 11 3333 1 11 1 5555555555 4 1 1 22 1 33333 1 33 1 4 22222 22 1111111111111111 33333333333333333333 1 4444444444 1111 3333333 1 1 222222222222222222222222222222222222222222222222222222222222222222222222 2222222222 11 11 11 66666666666666666 1 2222222222 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22 2222 1 333333333 1 1
lowQualScore : 6 55 33333333333333333333333333333333333333333333333333333 5 6 666666 7 77777777777777777777777777 0 1 4 4 1 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 0 33 8 33 8 5555555555555555 5555 777777777777 22 8888 3333 4444444444444 0 333 1 0 4 555555555555555555555555555555555555555555555 3 1 6 3 88 7777777777 666666666 2222 0 8 1111111111111111111111111111111 8 000000000000000000 0 3 111111 1 222 5 2 0 555 777 0000 7 00 7777 1 9 3 7 1 1 33 77777777777 0 6 7 88 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 2 1 5 66666666666 99999999999 3 6 0000000 1111 888888888888888888888888888888888888888888888888888888 4 6 7 0 0 7 5555555 6 7 4444444444444444444444 6666666 88 999 666 3 11 88 11111111111 7 1 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 6 4 2 2 6 111111111111111 0 2 777 88 6 8888 5 6 22 6 5 6 6666666666 0 6 6 5 7 11 6 5 6 99999 7 6 44 7 6 0 44444 6 6 6 33 1111111111111111 4 88888888888888888888 1 3 0 9999999999 3333 8 99 8 0000000 9 0 3 2 6 7 7 7 000000000000000000000000000000000000000000000000000000000000000000000000 7 6666666666 7 7 00 9 1 88 88 7 88888888888888888 3 4 5555555555 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 9999 7 444444444 7 7 6
lowQualScore : . .. ..................................................... . . ...... . .......................... . . . . . . ............................................................................................................................................................................................................................................................................................................................................................................ . . .. . .. . ................ .... ............ .. .... .... ............. . ... . . . ............................................. . . . . .. .......... ......... .... . . ............................... . .................. . . ...... . ... . . . ... ... .... . .. .... . . . . . . .. ........... . . . .. ................................................................................................................... . . . . ........... ........... . . ....... .... ...................................................... . . . . . . ....... . . ...................... ....... .. ... ... . .. .. ........... . . ................................................................................................... . . . . . . ............... . . ... .. . .... . . .. . . . .......... . . . . . .. . . . ..... . . .. . . . ..... . . . .. ................ . .................... . . . .......... .... . .. . ....... . . . . . . . . ........................................................................ . .......... . . .. . . .. .. . ................. . . .......... ........................................................................................................................................................ .. .... . ......... . . .
lowQualScore : 0 00 00000000000000000000000000000000000000000000000000000 0 0 000000 0 55555555555555555555555555 7 0 0 7 0 7 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 5 55 8 22 2 3333333333333333 0000 000000000000 55 2222 0000 0000000000000 0 888 2 5 0 888888888888888888888888888888888888888888888 0 4 4 2 88 6666666666 666666666 6666 8 0 8888888888888888888888888888888 0 666666666666666666 8 8 444444 8 444 0 0 0 000 888 8888 8 55 8888 2 8 0 8 2 2 55 88888888888 7 0 0 33 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 0 0 0 00000000000 00000000000 3 7 7777777 0000 777777777777777777777777777777777777777777777777777777 7 0 7 7 7 7 7777777 0 0 3333333333333333333333 3333333 33 777 777 7 00 33 77777777777 0 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 0 0 7 7 333333333333333 7 3 777 00 0 0000 0 0 00 0 0 0 0000000000 0 0 0 0 0 00 0 0 0 00000 0 0 00 0 0 0 00000 0 0 0 00 5555555555555555 0 33333333333333333333 0 3 7 7777777777 0000 3 77 3 3333333 0 7 3 0 7 7 0 3 333333333333333333333333333333333333333333333333333333333333333333333333 3 0000000000 0 7 00 0 0 77 33 3 77777777777777777 3 0 5555555555 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 0000 0 000000000 0 0 0
consensus : NATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATTGGACATTCGAAGAAGANATGANACTCACGTT---CGATTACA----TATAT----ATTAGTCC-TA-G-CAG--TAAAGGA--CAAAATCTTAAATT-TCTATCGA-NTN-----NTA-AATGTCTTCCNTTTTCTATCATTAAATT-ATGACTCGAACGACGGAAATTCGAC--AC-GTTTTTTT----ATACTTN-ATGGTANNTC--T-A---AAGT-AGATATTN-CTCAATATCGAGTAGCGNCTTAAAGTGTTTATAATG-TAATA-CTTTCGNT-GAATNATTC-----A---AC-----ATC-TCGTGCCAATTT-TG-ATA-ATAACANTC---GTTAA-A-CGTTGCTTA-AAAATATNGA--TAAAACA-AC-GTCATCGCCA-ACGTCTTGGGNNATCCAAGCATATCCAAA------TCCATATGNAAAAAGTAGTNCTTTTACATANCTT----GCCCAAGTTTTTCTA---CCNGCTTCATCT-AN-NC---GTTTT-AGCATNNTATAACATTGCTTNGGGTATC--TG--T-GGTNTTCCATACGTA-TTAATT-T----------TAGCCAATATTTTATACAGTTTGTNAT-ATAA---GT--AATACA------AAATGGCAG-TCTTCCGCACTCA-CC-------AAG-C-GC-AAAATAACG--GGCAGTATTT-TGC---G-ATAAT-TT---NCAATATTGTTT-----GCAGAATTTGATT-TGCACGTTTTCN--ATT--T-TNTCAACGTANTTGTAACCCNANATTTCCGATCCAT-AGCG-ANA--ATAGGTTTGACCATAGCGTCAAAT-ACTTTAAA-----CA-TA--TCA---NCGGGATCAAGATGACCAA--ANTTTCGTTGAAAG-TTAAATATA-AAG-A----G-CTTTAT--AGCTTNCGNTGCA-----AACATNTCTTGCGCTTTCGACCAT--ANNAGTTTTGGCGTGAAATANANACCTA-AATATTTATANAATGGNACAACNTTTATG--TTTN--TCGNCAAN-AAGT--CCANTTTTCA-T--TG-GTC-T-AAGATN-CCGCCGTTTCTAAANACAATAATTTCGGTTTTATANAA-ATTAATTTTCATA----TCG--ACTG--TTACAAAATTCTTCAA--TANAATTAANTTGNCGTTGA--AGNTCGACAACAGTATCCGCNNAANTT-GCAACGTCATCAGCGAACA--AAG-GC--ACTAAATC-T-GA-TATCA----TCA---ACGAAAATACC-CGATCG--CAT-----TTTNCATNC-GAAANG-----TAACTAAATCATTAATAAANAGAGAAAATATNATCGTGC-TA-------NCG-CACAGCCTTGCCTTGT-ACCAATATTACATGNGAAAAACTCAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGACTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAATCAAC----AAATATACAACAAAANCNNCCCATCTT-TTTT-GCT-AGA-TATTTTTGTGTC--ATNGCCATTAA-GTAAATAAATTATCTATAGT-G-ATACCCTTTTCTAAAA-CCTGACTGCGCTTCATCAAT--CATTATTATT-TC-GCACC-ATT------TCGTTAA--CTATTAN-TA--ATATACTG---AC----A-AATATTTTA--CATAANG-ATCGATNAGTGAAATGCC-CGGTAA--TTATTTGGGTC-----GATTTA---GA-CCTT-TTTATGNAACGGNNTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
Reference ( gi|2 ) : AATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC--AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACA----TATGT----ATTTGTCCTTAAG-CAG--TAAAAG---CAGTATCTTAAATG-CCTATCAG-TTC-----CTA-TATGTCTTCCCTTCTCTATCATTAGATC-ATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCT----ATATTTTCATGGCAAGTC--T-G---GAGTTAAATAATG-CTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----A---AC-----ATCATCATGCTTATTT-TA-AGA-ATAACATTCA--ATTAA-A-CGTTGCTTA-AAAATATTAA--TAAACCCTAC-ATCTTTCCTT-ACGTCATGGGAGATCCACACGTACCCAAA------TT------TGAAAAGTATTTCTTTTATACACCCT----GCCCAAGTTTTTCTA---CCAGATTCATGT-AT-AC---GTTTT-AGCATAACATAACAATGTTTTGGATACC--AG--T-GGTCTCTCATACGTG-TTAATT-T----------TAACCAATATTTAATACAGTTTGTCAT-ATAA---AT--AGTACA------AAGTGGTAC-TCTTCCACATTCA-CC-------AAG-A-GC-AAAATAACA--GGCAGTATTT-TGA---G-ACAAC-TT---ACAATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCT--ATT--T-TATCAACATAATTATAACCCAAAATTTCTGATGCAT-AGTATAAA--ATAGGCTTAACCATTGAGTCAAAC-ATTTTAAACCGGGCA-TA--TCA---ATAGGATCAATATGACCGA--ATTGTCGTTGAAAG-TTAAAAATACAAGCAGAT-GCTTTTAT--ACCCTGTAGTGAA-----AGTGTCTCTTGGGTTTTGGACCAT--ACTAGCTTGGGTGTGAAAAATACATCTA-AAT-TTTATAGAAAGGAACAACTTCGATAAGTTCG--TTGTTGAA-AAAC--CCATTTTTCAGT--TG-GTT-TTAAAACA-CCACCATTTCTGAAAACAACAACTTTTGTTTTACTTAA-ATTGATATTCATA----TTA--ACTGACGTGCAATATTCTTCAA--TATAGTTAATCTGGTGTTGT--AGGTTTATAACAGTATCAGAAAAAACTAGAAACATCATCAGCAAATA-TAAGTGCG-ACTAAATC-TTCA-TATCA----TTAGAAACAAAAATACCTCAATCG--CAT-----TTTTCATGTAGAAAAG-----TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-TA-------CCGACACAGCCCTGTCTTGT-TTCAATATTACATTTAAAGAAGTGTGTGAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTTTATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTT-GAT-AAA-TATTTCTGAATC--AGTACCATTAAAGTAAATATATTATCCGTTGTTGAATAGCCCTTTCTGAAA-CCGGCCTGAGATTCATCAATAACATTATTGTTATC-ACACC-ATT------TTGTTAAA-CGAATAGATA--ATATATTA---AC----A-AATATTTTA--CACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTC----AGATTTG--GAAGCCTT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTAG
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT--ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATAT-T----ATTT-TTCATA---CA---TATAGGA--CAGAATCTTAAATT-TTTATCTA-TTG-----ATA-AATGTCTTCCCTTCTCGATCATTAAAGT-ATGGGTCGAACAACGAAAATTTGAA--AC-GTTTTTCTTAAAATAT----ATGATAAATCAAT-GTCTAAGT---ATGATT-CTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG--ACCTGCGATC--CAT-CT--TTG-TA---A-ATAGCAGTC---TTTAATG-CGTGTTTTA-AATAAATGAA--TAAAATTAAT-GTCATTTCCA-ACATCTTGGGCAAGCCAAGCATATCCAAA------TCCATATGTAAAAAGTAATTCTTTAATATGACTA----GCCCAAGTTCTTCTG---CCTGCTTCATCT-AA-TT---GTTTT-AGCATTTTATAACATTGTTTAGGGTATC--TA--T-GGTTTTCCATACGTA--TAATTCT----------TAGCCAAAATTTTACACAGTTGGGAAT-ATAA---GT--AATACA------TAACGGTAA-TCTTCCGCATTCT-CC-------TAG-C-GCTAGAATATCA--GAT-GTATTT-TGT---G-ATAAA-TT---ACAATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCA--ATT--T-TTTCAACATACTTGTATCCCCAGATTTCAGAGCCAT-A--ACAAAGTATAGGTTTGACCATAGCATCAAAT-ACTTTAAA-----CA-TA--TCT---ACTGAATTTAGATGTCCAA--ATTTACGTTGAAAT-CTAAATATACAGGCAACA-GACTTAAT--ACCTTACAATGCT-----AACATTTCTTGCGTTTTTGACCAT--AGCAATTTTGGCGTGAAATAAACACCTA-AATATTTATAAAATTTGACAACATCTAT-AGTTTC--TCCACAAT-AAGT--CCACTTTTCTGT--AA-GCT-TGACGATG-CCTCCATTTCTAAAAACAACAATTTTTGATTTATCGAG-ATTAATTTTCATA----TCA--ACAGATGCACAGAATTGTTCAA--TACAATTAATTTGTCTTTGA--AGATGTACAACAGTATCTG-CGAAACTTGAAACATCATCAGCAAACATTAAG-GCT-ACTAACTCATTAA-TATCA----TCAGAAACAAATATACCACGATCA--CAT-----TTAGAATGTAGAAATG-----TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-TG-------GCCACACAGCCTTGCCTGGT-TCCAATGTTACATGGGAAAAACTCAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGACTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAATCAAC----AAATATACAATAAAAACGTCC--TTTTCTCTTAGAA-AGA-TACTTTTG--TCCTAAAGCCATTAAAGTAAATATGTTATCTATAGTGGTATACTTTTTCCTAAAT-CCTGCCTGTGACTCATCAATGACATCAAAAGTATC-GCACC-ATT------TAGTTAAT-CTATTACTTA--ATATG-TG---AC----AGAATATTTTA--CATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC------ATTTACTGGACCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|3 : agGGACACTCAAAGAAAACATGATATTCACATTGCACAATAG-A----TATATTCAGATTAGT------G-AAG--TAAAAGAGACAAAACTTT---TGTTCTATTGGAATA-----TTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAAC--GACCAATAGCAATTTT----ATACATACGCGGCATTTC--T------------ATATCT-CTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAA---CATCTACTAGAATTATTT---------AT-----ATT-TCATGCAAGTTT-TG-ATATTTGATATCC---ACCAA-T-CTTTGCTTA-AAAACAGAGA--TAAAACA-AC-GCATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAA------
gi|10 : gtgttatatttaTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACA----CATAC----ATTAG-CTTTATGACAAATTAAA-----CAAAATCGTAAAAT-TCCATCAA-GACAAGATCTA-AAGGTCTCCCTTTTTCTATAATTAAATT-ATGAC-----------AAATTCGAC--AATGTTTTTTT----AGACTTGAATGATATATC--C-A---GACGTAGATA-TGACTCAATATTAAGCAATGACTTATCGT---TATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGA---AT-----ATCTTCTTGCC-ATTTCTA-TTA-AAAAC--TCACTGTTAA-AACAT--CTTATGGAATATTG------------C-ATCATCGCCA-ACATCATGGGATATCCACACACATCCAAaccatacataaatactcagtttttaacattttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gggagTTTC----ATATTTT-ATAGGGATTT--TCA---AAGTAAGGTATTG-CTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GA----TTC-----ATGGAC-----ATCAGCGTGCCAATTT-TGCAGA-G-ACCACTCT--GTTAC-A-CGTTGTTTA-AA--TCTTAAGATAAATCA-ATGATCATCACCA-ATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATT------AAAAAAGTAGTG-TTTTG---ACCTTCGCAGCCCAAGTTACTCTC---CCAGCTTCATCTAATGAC---G---T-AGCATAATATATCATTGCTTAGGGTA------------TCTTGAAT---TG-TTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTAT--AG-ACA------A--TGGAAA-CCTTCCACACTCA-CCTCTTGAAAAG-GCGT-GAAAT----------GTATTT-TAATTTGTACAAT-TT---TAAATATCGAGT-----GCACAA-TTGACTATGTACGTTTTCA--ATT--TATGTT-GCGTACTTAAAACCCAATAACTCTGATCCATAAGTG-AGG--GTCGGTGTGACCATAGTGTCAAATAATTTT--------CATTAT-TCA---TTGTGATCAAAAT-ATCTATCACTTTTTTT--AAGTTTATAAATAAAAA----------TTAT--GGCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTCGATCAT--ATTAGTTTTGGTGTAATGTATAAACCCATAAT-TTTATAGCAAGGAACATTTGTGATA--TTTGCCCCGT--AATATGT--CCAGATTTCATTTCTGCGT-----AAATAGCTGCCGTTTCTAAACACTATGACTTTGGTTTT-CATAAGATTAATTTTCATACCTGTT----CTG--TTACAA-AAACTTGAAATTATA-TTAAACTGCGACTGTAAAGGTCGAC--CAATATCA-CTACAGTTGGCAATGTCATCAGCATACA--AAATG------AAATA-T--A-TATC-----T-----ACATGAATAC--CATTTGTACATGATTGTTTCCATTC-----AT-----CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTTA-------ATG-TACAGCCTTG-CCTGCAACCAATATTGCA
gi|12 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTACATATCAT----GTCCATGGTTTTCTA---CATGTTTCTTTT-AA-TC---TCTTT-AAAATAGCATAGATTTGTTTTGGATGCG--TG--T-GATATTCCTTGCAAAATTAACT-T----------AAGCCAATATTCTATACAATTTTTCAT-ATTA----TGAAGTACATCTGTTAAGTGGCAG-CCTTCCACAC-CA-TC-------GAGGA-AC-AAAGCAATT--TCCAGTGTTT-AGC---A-ATAAA-G----ACAGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCT--ATTTGT-TTTCACC---ATTACA---TAAAATAGATAATACAT-AG
gi|3 : CCAAATATATCTAAAACCATA--CATAA-AT-ACTCAGTTTTTAACATTTTATAACAATTCTTTGGATATCTTAGATTAGG-----CATTTGTA-ATAGTT-T----------ACGCCAATATTTTATAGAGTTTGTAAA-ATAT---GT--TATACA------TAATGGCTG-TCGTCCGCACTCATCC-------A-----GC-ACAAT--CG--AGT--TATTTATGG---A-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC----TCTCAATA--G-TATCTACATAGCTGTGACCCCATATTTCCGACCCAT-AACAGATA--ATAGACTTGACCATAGAATCAAAT-A----AAAC---GAA-TAATTCATTTGTGGGG--AA-GTGACCAT--AAGGTTGTTGATAG-TGAAGTATA-GAGAATATTGTTTTTTTTTAGCTTGTGCTACA-----AACTTCTGTTGTGCTGCCAACCATGAAAGAGGAGGGGTAT--AAAGCAGTCCTA-TATATTTGTATACTGGCGTAACCTTTATG---TGA--TTGCCAAG-AAATTGCCATTTCTCA-T--TG-TTCCTTAAGTTT-CCACCATTTCTAAATACAATAATTTCAGTTTTATACAA-GTTAACTTTCATA----CCGGTATTG--TTAAAAAATTCATCTA--CAACATTAAGTTGATGTTGA--AGTTTGATAAATGTTTCCGCGCAATTT-GCAACATCATCAGCGAATA-AAAG-GCATATTATATC-TGGAATATCAGCGTTTA----TGAAAATACCTGAACCG--CAT-----CTTTCTTCTTAAAAGGATAGATAAC----TCATTAATAACGAGAGAAAATATGGTTGTAC-TAGTTGTGTCCG-------TCTGTCTTGT-ACCTATATTACATGTAAA
gi|17 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatATACGAA-TTAGTT-G----------TAGCTAGTATTTAATGCAATTTGTCAT--TAA---GT--TATACA------AA-TGGCATGTCTATCACGTTCA-CC-------AAG-C-AC-A----AACATTGGCAGTTTTT-TGT---G-ACAATGCT---GC-ATAGTGTTA-----CCAGAATatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|7 : ----AACAAAATCTA-CCACCTT--TTT-GCT-AAAATATTTTTGTGTC--ATGGCCAT----ATAAATGAATTATCTGTTGT------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA----ATTATTCT--TC-AAACCAATTATATAGTTTTT-----GAATAT-TC--ATATATTACATACCTGTA-AGTATCGTATTCAAAAT--ATCGATTAAAGATATAC--CTGTAAAGTCA-TTGGGCC----CGATTTA--TAAATCAT-TTcgttctcaattctttctgagtattcataaccctaactt
gi|14 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcCCATCTT-TTTT-GCTTAGA-TATTTCTGTACC--ATTGCTTGTAATGTAAATAAATTATAAATAGTTGAATACCCATTTCTAAAA-CCAGACTGAGCTTGATCATTTCTATTTTTATTTTCTAC-CC-A-C------TCGCTAAATCTATTAAACATCAT-TACTG---TT----A-AA-ATTTTA--CTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATCATTTAAATTT-------CCTTCTTTATGAAACGGACctgaaattattgcatcaggcccactacact
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TTTTATTTTATCTTAGTATACCGACATTCCTAAGAACAACTTTTTTGTCTTTGTACATTGATTTTCATTCAAATTAATGCAAAAAGAAGAAATGATATCAATCTGTGACTGTAAGCCTATAACAGTATCACTAACGTTTGCCAAATCATCTGCATACATCACTGCAATGACATATTCAGTTTCTGATATTTGTAGTCCTCTGATATCGGCTACTTTTAATTCATCAATAAGATCATTAATAGATAATGAGAATTAAATCATGTTGAGTTTACACCCTTGCCGTGTACCTATGTTACAATTAACATTTTTATTTACAATCATCAACCCTGACACATGTACAAGGGTTTCATATGCCGTAGAAAATCAAAGAAGAAACAATGAAATCTACCACCTTTTTTGCTAAGATATCTTTGTGACATGGTCATTAATGAAAATAAATTATCTGGTGTACTGTAACCTTAACGAAATCCTGATGGCGGTTCGTCTATTTTATTATTTTCTTCAGACTAATTATAAAGTCGTGTTTTCATCATGCCTGTAAGTATCGTATTCAAAATATCAATTGAAATATACCTATGAAATAATTAGTATCATTCATTGAACCCGATTTATAAAGTTGTCACAGTATGCTTTCTGACCAAGCAGCAGGATACACT
Unaligned ( gi|6 ): TTTACATTGAATTGCAAGCATTTTGTTAGCTAAAGTCCATCTTGGTTTTGTTCTGAGTAAAGAATAGTATCATATTTTGAAACAGTGACACTGTTTCTACTATTTTCTCGTCAGGTACCTAATGTTCATTTACTCTGTGATAATTCCCATTTATAACCACTAGTATTACTGATTTCTTCAGATATATCCGCATAGCGGTTTTATTTGCAAAGGTTAGATAAAAATTGTTAAACAGCATCACTACAATTTGCCAAATCATCGGAATATGGTACCGCAAAAACATCATCTACTTTGTGTATACCATTAGCACAGCCGTGTTTTAGTTCTAATTCATTAACCAGCTTTCGAATAAAAATATTAAATAAAATCGTACTTAATTGACAGCCTTGGCGATAACCAACGTTACAATTGAAAATATTAGTATAATTATCACGATCGTACTGATTTTGATAATTATACTG
Unaligned ( gi|8 ): ATTTGTGCGACCATACGGTTGTTGGTAATGTAAAATTGGAAAAATATAAAATATAGTTTTATATGTTTGAGATGCTAGTTTCTGTTAGGTCAGAGTCAATAACAGTCTTGGTGTAAATAGCAGACTCATGTACTAATAAACTTTTGTTACTTTGATTTGAGATCCACGAAAGTGCCATCATTCATTTTGTCTTATCCCCTCCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAATTCAGTTATATATCTAAATATAATTAACTCCTATCATCCCTTTATTTCAACTAAAATTTCTACAGCATCAATTTGTAGTTAACGTTTTATAATGATGTCTACATAATACGCAACAGCGTCTCCAAACAAAAAAAATA
Unaligned ( gi|9 ): TGTTTTCATCAATATGTTTTCTACAAAACTTAATGTGTATACTTTCGATATTATGACATGCTTGACCACAGAATCAAATAAAAAGGAACAATTCATTGGTGGGAAAGTGATCATACGGTTGTTGGTAGTGAAGTATTGAGGCTATCGATTGTTGAGCTTGTGCTGAAAGCTTCTGTTGTGCTGCCAACCATGAAAGACAAGGGGTAAAAATTCGTCCCATATATTTGTAACCTGAGGTAACCTTTATGTGATTACAACAAAATTGTCATTGCTCACTGTTTCTTACTAGGTTCCCACCATTTCTAAATACAATAATTTCATTTGAATAGTTTTACACCGTTAATGTTA
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|13 ): ATAATACAAGTAGTACGCAGTATTCAGTTCAGACATAAGATATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGTGACTGTAAGCCTATAACAGTGTCACTAACGTTTGCCAAATCATCTGCGTACATCACTGCAACGACATCTTCAGTTTCTGATATTTGTATTCCGCAGTGCTGATAATAGCTCCTTTCAGAT
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|16 ): ATTTGCAACATCGTCTGGGGAAAAAGGGCATATCTGGAATATCAGTGTTTAATGAAAATACCTGAACTGCTAAAATAGGATAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTTGTTGTGTCCCCCTGTCTCATACCTATAGTAAATTCTGAAAATTTGAACAGTTTGACATGG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 2 1 2 11 333333 2 1 222222 111 2222 555555555555555555555555 1 333333333333 11 1 111 33333 222 3333333333333 11 11 11 333333333333333 1111111111 111 22222 1111 11 1 2222 1111 1 2222222 3333333333333 1 2222222 444444444444444444444444444444 222222 11 111 11111 111 1111 22222222222 6666666666666666666666666666666666666 11 1 11 2222 8888888888888888888888888888 1111111 22222222 11 333333333333333333 11 44444444444444444444444444444 1 2222 44444444444444444444 1 11 11 1 11 55555555555555555555555555555555555 66666666666666666666666666666666666666 222222222222 111 1111111 222222 11 1 1 33333 111 1 22222 444444444444444 33333 1 444444444444444444444444444444444444444444 1 11 3 3 11 22 44444444 1 1 33333333 222 333 1 22 11 11 222 2222 22 55555
lowQualScore : 88 4 0 2 5 2 2 0 88 3 3 2 999999 0 2 3 88 55 4 999 3 88 2 333333 1 1 88 777 2 9 0 1111 333333333333333333333333 3 0 444444444444 11 1 3 0 222 0 4 0 3 0 66666 1 8 1 1 555 8 1 22 3333333333333 11 1 1 66 6 1 1 5 1 33 44 8 8888 11 666666666666666 1 4 5555555555 1 777 8 8 5 8 1 22 0 00000 88 5555 1 22 0 1 33 11 0 0 77 6 0 55 1 1111 1 0 1 0 0 5555 0 22 1 1 3 3333333 999 3 0000000000000 2 3 1 3 4 2222222 6 0 000000000000000000000000000000 6 000000 22 1 111 1 66666 2 222 6 2 99 1 3333 1 66 1 1 1 1 5 00000000000 5 8 5555555555555555555555555555555555555 33 0 1 77 222 6 2 3333 4444444444444444444444444444 9999 6666 7777777 1 6 1 2 7 3 3 6 99 22 9999 6 3 3 00000000 00 7 1 22 1 0 3 111111111111111111 1 99 11 1 22222222222222222222222222222 4 2 1 4 2 6 0000 1 6 99 66666666666666666666 8 0 1 11 555 1 77 11 1 99 0 1 22 1 6 6 3 6 0 6 55 8 22222222222222222222222222222222222 22222222222222222222222222222222222222 1 55 1 888888888888 4 3 6 4 777 9999999 222222 777 11 0 2 88 7 5 2 3 4 88 4 5 2 6 22222 666 2 1 555 3 8 6 6 8 33 22 44444 1 111111111111111 4 0 6 1 0 3 5 3 66666 3 6 44 999999999999999999999999999999999999999999 6 11 0 3 33 7 1 0 2 1 1 1 0 2 33 0 55 55555555 3 3 1 22 4 4 66 88888888 000 55 555 5 77 88 2 4 4 3 66 88 4 4 4 000 3333 3 77 00000 2 4 2 4 66 3 4 4 4
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . ...... . . .. ... . . . .... ........................ . . ............ .. . . . ... . . . . . ..... . . . . ... . . .. ............. .. . . .. . . . . . .. .. . .... .. ............... . . .......... . ... . . . . . .. . ..... .. .... . .. . . .. .. . . .. . . .. . .... . . . . . .... . .. . . . ....... ... . ............. . . . . . ....... . . .............................. . ...... .. . ... . ..... . ... . . .. . .... . .. . . . . . ........... . . ..................................... .. . . .. ... . . .... ............................ .... .... ....... . . . . . . . . .. .. .... . . . ........ .. . . .. . . . .................. . .. .. . ............................. . . . . . . .... . . .. .................... . . . .. ... . .. .. . .. . . .. . . . . . . . .. . ................................... ...................................... . .. . ............ . . . . ... ....... ...... ... .. . . .. . . . . . .. . . . . ..... ... . . ... . . . . . .. .. ..... . ............... . . . . . . . . ..... . . .. .......................................... . .. . . .. . . . . . . . . . .. . .. ........ . . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 0 5 0 5 5 0 55 0 0 5 555555 0 5 0 00 55 0 555 0 00 0 777777 0 0 55 555 0 8 8 2222 555555555555555555555555 2 0 555555555555 22 0 2 0 222 8 2 2 2 2 88888 2 0 0 4 000 0 8 00 4444444444444 00 0 8 00 0 4 0 6 4 88 00 0 4444 66 666666666666666 4 4 4444444444 0 444 0 0 6 0 4 00 8 66666 88 6666 4 00 6 2 22 00 0 2 55 2 8 22 2 2222 2 8 0 2 2 8888 8 00 4 0 2 2222222 555 5 5555555555555 2 7 0 3 0 8888888 7 7 000000000000000000000000000000 7 000000 77 0 777 7 77777 2 555 7 2 33 0 3333 0 00 0 0 0 4 0 44444444444 6 2 4444444444444444444444444444444444444 88 6 4 00 222 4 5 8888 8888888888888888888888888888 3333 3333 2222222 0 5 0 5 8 7 0 7 22 00 0000 3 7 5 00000000 77 3 0 00 0 8 8 888888888888888888 0 44 00 0 66666666666666666666666666666 6 8 0 2 0 7 0000 7 7 22 88888888888888888888 0 6 4 00 444 0 44 00 0 66 8 4 00 0 7 7 3 7 7 7 88 0 22222222222222222222222222222222222 66666666666666666666666666666666666666 0 00 0 888888888888 2 2 7 0 444 2222222 888888 000 00 8 5 33 3 0 5 0 0 00 0 5 5 7 00000 000 0 0 222 2 0 0 0 0 66 00 44444 4 222222222222222 4 6 6 0 6 2 0 8 00000 8 0 55 000000000000000000000000000000000000000000 5 55 0 2 88 0 0 0 5 0 2 2 0 5 88 2 00 55555555 3 3 0 00 0 0 55 55555555 555 55 000 5 55 00 5 0 0 0 55 55 0 0 0 000 5555 0 55 00000 5 0 5 0 55 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTCA-TGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATAT----ATTAGTTTT--A--GCA-G--TAAAAGA--CAGAATCTTAAAT-TTCTATCG-ANTNN-----TAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTT-TTATACTT-TCAT-GGCATNTCCAGA-GT--A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGTGAATNATTC-----AACATCAT-CGTGCCANTTTTGNNAAT-AA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGATAAANC-A-ACG-TCAT--CNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTNACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNATACA------NAATGGCA-GTCTTCCGCACTCACC--------NAGCG--C-AAAATAACGGGCAGTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATT--T-TNTCGACGTANTTATAACCCNANATTTCCGATCCATA-AC-G-ANA-ATAGGCTTGACCATAGAATCAAATA-TTTTA-----AA-----C--A---TA--TCGNT---GGGATCAAGATGACCATAACTTTCGTTGAAAGTT---AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNTG-----CNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATA-NAN-A--CCCA-NATATTTATAAAATGGGACAACCTTTATA-GT--TTNTCGNC----AANA-AGT--CCATTTTTC-A-TTGN-T-----C--TA---A-GATN-CCGCCATTTCTAAANACAATAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTCTTCAA--TANAATTAATTTGNCGTTG--AAGNTTTATAACGGTATCCGCGAAANTT-G-CAACATCGTC-AGCGAAC-A--AAG-GC--ATTAAATC--TGGAATATCA----TCAGAA---ACGAAAATACCA--------CG-ATC-GCATTTTNCATNTAGAAANG--TAACTAAATCATTAATAAANAGAGAAAATANNATCGTGC-T-A-NCG-TA-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGACT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAATCAAN----AAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTAAATGTAAATAAATTATC---CGTAGTTGG--ATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-ACATTATTATTATCGCACCA---------TTTCGTT-AA--CTATTA-ATA----ACA----TACTGACA-AATATTTTA--CATAAAGAATCNATNAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATTGGACATTCGAAGAAGANATGANACTCACGTT---CGATTACATATAT----ATTAGTCCT--A--GCA-G--TAAAGGA--CAAAATCTTAAAT-TTCTATCG-ANTNN-----TAA-ATGTCTTCCNTTTTCTATCATTAAAT-TATGACTCGAACGACGGAAATTCGAC--AC-GTTTTT-TTATACTT-N-AT-GGTANNTCTAAA-GT--A-GATAT--TNCTCAATATCGAGTAGCGNCTTAAAGTGTTTATAATG-TAATA-CTTTCGNTGAATNATTC-----AACATC-T-CGTGCCAATTTTGATAAT-AA--CANTC-G-TT-AA-ACGTTGCTTA-AAAATATNGATAAAAC-A-ACG-TCAT--CGCCAACGTCTTGGGNNATCCAAGCATATCCAAATCCATATGNAAAAAGT-AGTNCTTTTACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTANN--CGTTTTAGCATNNTATAACATTGCTTNGGGTATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTTATACAGTTTGTNATA-TAAGTAATACA------AAATGGCA-GTCTTCCGCACTCACC--------AAGCG--C-AAAATAACGGGCAGTATTT-TG---CG-ATAAT-TTNC---AATATTGTTT-----GCAGAATTTGATT-TGCACGTTTTCNATT--T-TNTCAACGTANTTGTAACCCNANATTTCCGATCCATA-GC-G-ANA-ATAGGTTTGACCATAGCGTCAAATA-CTTTA-----AA-----C--A---TA--TCANC---GGGATCAAGATGACCA-AANTTTCGTTGAAAGTT---AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTNCGNTG-----CAAACATNTCTTGCGCTTTC-GA--CCATANNAGTTTTGGCGTGAAATA-NAN-A--CCTA-AATATTTATANAATGGNACAACNTTTAT--GT--TTNTCGNC----AANA-AGT--CCANTTTTC-A-TTGG-T-----C--TA---A-GATN-CCGCCGTTTCTAAANACAATAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATATCG--A--C----TG--TT---AC-AAAATTCTTCAA--TANAATTAANTTGNCGTTG--AAGNTCGACAACAGTATCCGCNNAANTT-G-CAACGTCATC-AGCGAAC-A--AAG-GC--ACTAAATC--TG--ATATCA----TC---A---ACGAAAATACC---------CG-ATC-GCATTTTNCATNC-GAAANG--TAACTAAATCATTAATAAANAGAGAAAATATNATCGTGC-T-A-NCG-CA-CAGCCTTGCCTTGT-ACCAATATTACATGNGAAAAACT----CAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGACTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAATCAAC----AAATATACAACAAAANCNNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGTCATNGCCATT-AA-GTAAATAAATTATC---TATAGT--G--ATACCCTTTTCTAAAACCTGACTGCGCTTCATCAAT--CATTATTATT-TCGCACCA---------TTTCGTT-AA--CTATTA-NTA----ATA----TACTGACA-AATATTTTA--CATAANG-ATCGATNAGTGAAATGCC-CGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGNAACGGNNTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT--ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAAT----ATTATTTTT--C--ATACA--TATAGGA--CAGAATCTTAAAT-TTTTATCT-ATTGA-----TAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--AC-GTTTTTCTTAAAATA-T-AT-GATAAATC-AAT-GTCTA-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGAGAATCATTT-----AG-ACC-TGCGATCCATCTTTGTAAAT-AG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCAT--TTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTTC--CATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAATACA------TAACGGTA-ATCTTCCGCATTCTCC--------TAGCG--CTAGAATATCAGAT-GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATT--T-TTTCAACATACTTGTATCCCCAGATTTCAGAGCCATA-AC-A-AAGTATAGGTTTGACCATAGCATCAAATA-CTTTA-----AA-----C--A---TA--TCTAC---TGAATTTAGATGTCCA-AATTTACGTTGAAATCT---AAATATAC--AGGCAACA-GAC--------T-----TAAT--A-CCTTACAATG-----CTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATA-AAC-A--CCTA-AATATTTATAAAATTTGACAACATCTATA-GT--TTCTCCAC----AATA-AGT--CCACTTTTCTG-TAAG-C-----T--TG---ACGATG-CCTCCATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAA--TACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTGCGAAACTT-G-AAACATCATC-AGCAAAC-ATTAAG-GCT-ACTAACTCATTA--ATATCA----TCAGAA---ACAAATATACCA--------CG-ATC-ACATTTAGAATGTAGAAATG--TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-TGG-CCA-CA-CAGCCTTGCCTGGT-TCCAATGTTACATGGGAAAAACT----CAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGACTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAATCAAC----AAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTAAA-GTAAATATGTTATC---TATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGACATCAAAAGTATCGCACCA---------TTTAGTT-AAT-CTATTACTTA----ATA----TG-TGACAGAATATTTTA--CATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATAC----ATTAGCTTT--ATGACA-AATTAAA-----CAAAATCGTAAAA-TTCCATCA-AGACAAGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGACA-AT-GTTTTT-TTAGACTTGA-AT-GATATATCCAGACGT--A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGATGTA-GGTTCCTATGAATATCTT-CTTGCCATTTCTATTAAA-AACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCAT--CGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagTACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATTC--CTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATATTATGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATC--------GAG-GAAC-AAAGCAATTTCCAGTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTTGT-TTTCA
gi|14 : CCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGCTTGT-AATGTAAATAAATTATA---AATAGTTGA--ATACCCATTTCTAAAACCAGACTGAGCTTGATCATTTCTATTTTTATT-TTCTACCC---------ACTCGCT-AAATCTATTA---A----ACATCATTACTGTTA-AA-ATTTTA--CTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGccattacataaaatagataatacatag
gi|16 : ATTT-G-CAACATCGTCTGGGGAAA-A--AGG-GC--AT---ATC--TGGAATATCAGTGTTT---A---ATGAAAATACC---------TG-AACTGC---TAAAATAG-GA------TAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTT-G-TTG-TG-TCCCCCTGTCTCAT-ACCTATAGTAAATTCTGAAAATTTGAACAGTTacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTATAC-------AAATGGCATGTCTATCACGTTCACC--------AAGCA--C-AAA--CATTGGCAGTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATT--C-TTTCTGAGTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC--AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGT----ATTTGTCCTTAA--GCA-G--TAAAAG---CAGTATCTTAAAT-GCCTATCA-GTTCC-----TAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTT-CTATATTT-TCAT-GGCAAGTCTGGA-GTT-A-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGTGAA-GATTC-----AACATCAT-CATGCTTATTTTAAGAAT-AA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAATAAACC-CTACA-TCTT--TCCTTACGTCATGGGAGATCCACACGTACCCAAATT----TG--AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTCT--CATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAGTACA------AAGTGGTA-CTCTTCCACATTCACC--------AAGAG--C-AAAATAACAGGCAGTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATT--T-TATCAACATAATTATAACCCAAAATTTCTGATGCATA-GT-ATAAA-ATAGGCTTAACCATTGAGTCAAACA-TTTTA-----AACCGGGC--A---TA--TCAAT---AGGATCAATATGACCG-AATTGTCGTTGAAAGTTAA-AAATACAAGCAG-----ATG-CT-------T-----TTAT--A-CCCTGTAGTG-----AAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAA-TAC-A--TCTA-AAT-TTTATAGAAAGGAACAACTTCGATAAGT--TCGTTGTT----GAAA-AAC--CCATTTTTC-AGTTGGTT-----T--TA---A-AACA-CCACCATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAA--TATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAAAACTAG-AAACATCATC-AGCAAAT-AT-AAGTGCG-ACTAAATCT-TC--ATATCA----TTAGAA---ACAAAAATACCT--------CA-ATC-GCATTTTTCATGTAGAAAAG--TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-T-A-CCGACA-CAGCCCTGTCTTGT-TTCAATATTACATTTAAAGAAGT----GTGTGAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTTTATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTAAA-GTAAATATATTATC---CGTTGTTGA--ATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAACATTATTGTTATCACACCA---------TTTTGTTAAA--CGAATAGATA----ATA----TATTAACA-AATATTTTA--CACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA--GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATATTCAGATTAGT--------GAA-G--TAAAAGAGACAAAACTTT---TGTTCTATTGGAATAT-----TAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATT-TTATACAT-ACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTACTA-GAATTATTT-----A-TATT-T-CATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGATAAAAC-A-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTATACA------TAATGGCT-GTCGTCCGCACTCATC--------CAGCA--C-AA--T--CGAGT--TATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATA--G-TATCTACATAGCTGTGACCCCATATTTCCGACCCATA-ACAG-ATA-ATAGACTTGACCATAGAATCAAATA-----A-----AA-----CGAA---TAATTCATTTGTGGGG--AAG-TGACCATAAGGTT-GTTGATAGTG---AAGTATAG--AG-----A-A-TATTGTTTTT-----TTTT--A-GCTTGTGCTA-----CAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATA-AAGCAGTCCTA-TATATTTGTATACTGGCGTAACCTTTAT--GT--G-ATTGCC----AAGA-AATTGCCATTTCTC-A-TTGT-T-----CCTTA---A-GTTT-CCACCATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTA--CAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCGCGCAATTT-G-CAACATCATC-AGCGAATAA--AAG-GCATATTATATC--TGGAATATCA----GC---GTTTATGAAAATACC---------TGAACC-GCATCTTTCTTCT-TAAAAGGATAGATAACTCATTAATAACGAGAGAAAATATGGTTGTAC-T-AGTTG-TGTCCGTC-TGTCTTGT-ACCTATATTACATGT--AAAATA----TAGTT------TT----------ACGCATGATTTAAG--GTTGTTATACATTGTCT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTT-TCATATTT-T-ATAGGGATTTTCAAA-GT--AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTTGATTCATG------GACATCAG-CGTGCCAATTTTGCAGAG-AC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGATAAATC-A-ATGATCAT--CACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTATAGA------CAATGGAA-ACCTTCCACACTCACCTCTTGAAAAGGCG--T-GAAAT--------GTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATT--TATGTTG-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTC-----AT-----T--A---T---TCATT---GTGATCAAAATATCTATCACTTTTTTT--AAGTTTATAAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTA-TAA-A--CCCATAAT-TTTATAGCAAGGAACA---TTTGT--GA--TATTTGCCCCGTAATA-TGT--CCAGATTTC-A-TT---T-----C--TGCGTA-AATAGCTGCCGTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAA-CTTGAAATTATA-TTAAACTGCGACTGTAAAGGTCGAC--CAATATC-ACTACAGTT-GGCAATGTCATC-AGCATAC-A--AA------ATGAAAT-------ATAT-A----TC---T---ACATGAATACCATTTGTACATG-ATT-G---TTTCCATTC----AT---CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTT-A-ATG-TA-CAGCCTTGCC-TGCAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaAGATCATTAATAGATAATGAGAATTAAATCATGT-TGA-GTT-TA-CACCCTTGCCGTGT-ACCTATGTTACAATTAACATTTT----TATTTA--CAATCATCAACCCTGACACATG
gi|5 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataTCATATGCCGTAG-AAAATCAAA----GAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT-AATGAAAATAAATTATCTGGTGTACT--G---TAACCTTAACGAAATCCTGATGGCGGTTCGTCTAT--T-TTATTATT-Ttacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT-----ATAAATGAATTATC---TGT--T--G---TACCTTTTACGAAATCCTGATTGCGCTTC--CAA----ATTATT-CT-TCAAACCAATTATATAGTTT--TT-GA--ATATTC-ATATATTACA----TACCTGTA-AGTATCGTATTCA-AAAT-ATCGATTAAAGATATACC-T-GTAAAGTCATTGGGCCC-GATTTA---tcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgTTGGAA------AAATATAA--AATAT--A-G-T--------T-----TTAT--ATGTTTGAGATG-----CTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCAG-A--CTCA-TGTACTAATAAAtaaatcatttctgaaattattgcatcaggcccactacact
gi|8 : atttgtgcgaccatacggttgttggtaatgtaaaaTTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTA--CAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTACATAATAC-G-CAACAGCGTC-TCCAAAC-A--AActtttgttactttgatttgagatccacgaaagtgccatcattcattttgtcttatcccctccccccctttttcttatttctaatttctaaatacaataattcagttatatatctaaatataattaactcctatcatccctttatttcaactaaaatttctacagcatcaatttgtagttaacgttttataatgatgtctacataatacgcaacagcgtctccaaacaaaaaaaata
gi|9 : atttgtgcgaccatacggttgttggtaatgtaaaattggaaaaatataaaatatagttttatatgtttgagatgctagtttctgttaggtcagagtcaataacagtcttggtgtaaatagcagactcatgtactaataaacttttgttactttgatttgagatccacgaaagtgccatcattcattttgtcttatcccctccccccctttttcttatttctaaATACTTTCGAT--ATT-AT-G-ACA--T--GCTTGACCACAGAATCAAATA-----AAAAGGAA-----C--AATTCA--TTGGT---GGGA--AAG-TGATCA-TACGGTTGTTGGTAGTG---AAGTATTG--AG-------G-C--------TATCGATTGTTGA-GCTTGTGCTG-----AAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-A-TTC-GT-CCCA-TATATTTGTAACCTGAGGTAACCTTTAT--GTGATTA-CAAC----AAAATTGT---CATTGCTC-A-CTGT-TTCTTAC--TA---G-GTTC-CCACCATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaaata
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTACATTGAATTGCAAGCATTTTGTTAGCTAAAGTCCATCTTGGTTTTGTTCTGAGTAAAGAATAGTATCATATTTTGAAACAGTGACACTGTTTCTACTATTTTCTCGTCAGGTACCTAATGTTCATTTACTCTGTGATAATTCCCATTTATAACCACTAGTATTACTGATTTCTTCAGATATATCCGCATAGCGGTTTTATTTGCAAAGGTTAGATAAAAATTGTTAAACAGCATCACTACAATTTGCCAAATCATCGGAATATGGTACCGCAAAAACATCATCTACTTTGTGTATACCATTAGCACAGCCGTGTTTTAGTTCTAATTCATTAACCAGCTTTCGAATAAAAATATTAAATAAAATCGTACTTAATTGACAGCCTTGGCGATAACCAACGTTACAATTGAAAATATTAGTATAATTATCACGATCGTACTGATTTTGATAATTATACTG
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|13 ): ATAATACAAGTAGTACGCAGTATTCAGTTCAGACATAAGATATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGTGACTGTAAGCCTATAACAGTGTCACTAACGTTTGCCAAATCATCTGCGTACATCACTGCAACGACATCTTCAGTTTCTGATATTTGTATTCCGCAGTGCTGATAATAGCTCCTTTCAGAT
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111111 111 2222 3333333333 1111111 1 33333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 11 111 11111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 222222222222222222222 222222 222222 11111 111 111 2222222222 1111 55555555555555555555555 11 1 11111111 33333333333333333333 8888888888888888888888888888 11111 11111111 1111111 444444444444444444444444444 11 1 55555555555555555555555555 222222222 1111111 1111 44444444444444444444 111 11 1 11 22 1111 2222 3333333333 11 11111 3333333333333 1 3333333333333333 11 1 22 1 1 222 111 1 11 1 1111 11 22 2222222 11 444444444444444444444444444444444444 222222 1 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 444444 0 1 1 777 9 0 1111 6666666666 9999999 3 0 33333333 1 22 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 11 1 1 22 8 1 11 1 777 8 8 5 8 1 22 0 88888 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 444444444444444444444 6 000000 222222 1 5 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 8 5555 88888888888888888888888 33 0 66666666 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 6 77777777 1 3 7777777 3 222222222222222222222222222 7 6 55 1 11111111111111111111111111 66 4 222222222 8888888 1 2 8 5 6666 6666 77 11111111111111111111 6 333 99 22 88 99 1 4 6 3 5 1 1 1 66 1 5 33 99 8 77 0000 2222 3333333333 22 1 22 9999 1 6 3 6 88888 1 11 22 0 4444444444444 5 0 8 5 1 1 0 6 4444444444444444 3 1 3 99 3 33 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 5 66 0 1 7777 11 22 1 0 1 1 0 3 1 3 5555555 77 00 555555555555555555555555555555555555 222222 11 0 3 4 1 4 1 1 4 1 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . ...... . . . ... . . .... .......... ....... . . ........ . .. .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... . . . . . .. . ..... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . ..................... . ...... ...... . . ..... ... . .. . . ... . . . . . .......... . . . .... ....................... .. . ........ .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . . ....... . ........................... . . .. . .......................... .. . ......... ....... . . . . .... .... .. .................... . ... .. .. .. .. . . . . . . . . .. . . .. .. . .. .... .... .......... .. . .. .... . . . . ..... . .. .. . ............. . . . . . . . . ................ . . . .. . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. . .. . . .... .. .. . . . . . . . . ....... .. .. .................................... ...... .. . . . . . . . . . .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 333333 8 2 0 555 8 8 2222 0000000000 5555555 2 0 22222222 0 00 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 88 4 0 00 0 0 00 4 444 0 0 6 0 4 00 8 66666 88 00 0 4 66 6 2 55555 0 2 5 0 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 555555555555555555555 7 000000 222222 0 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 0 4444 88888888888888888888888 88 6 88888888 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 7 22222222 0 5 2222222 7 888888888888888888888888888 5 7 88 4 66666666666666666666666666 77 0 999999999 6666666 0 3 9 7 0000 0000 99 33333333333333333333 7 555 22 55 88 22 0 8 7 7 7 0 4 4 33 4 7 66 22 0 00 8888 2222 2222222222 88 0 66 4444 0 0 8 4 66666 0 00 00 2 6666666666666 0 9 4 7 4 0 3 7 5555555555555555 8 0 2 44 8 88 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 6 66 6 4 8888 00 00 0 6 4 0 6 2 0 8 8888888 00 88 888888888888888888888888888888888888 555555 55 0 2 0 2 0 0 0 2 2 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATAT----ATTAGT--TTTAGTA-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCNTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGATAAANC-A-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTT--CCATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-T---TNCAATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAAT-ATTTTAAA--G--C--A---TA--TCG---GTGGGATCAAGATGACCATAACGNTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G--------C-T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAA-TAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCGCGANAA-GT--CCATTTTTCA-TT--GT-T-----C--TA---A---G-AT-NCCGCC---------ATTTC-------TAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTCTTCAA--TANNATTAATCTGNNGTTG--AAGGTTTATAACAGTATCCGCGAA-ATTT-GCAACATCGTC-AGCGAAC-A--AA--G-GC--AT-TANATCTG---GAATATCA----TCGGAAACGAAAATACCNCGATCGCATTTTNCATNTAGAA-AGGATAACTAGATCATTAATAAANAGAGAAAATAAGATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATGTTACATTTAAAAA-ATT----CAGT-TAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCTGTNGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTCGTT-AA--CTATTA-A-TA----ACAT----ACTGACA-AATATTTTACNCAAAGNATCNATNAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTCATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATAT----ATTAGT--TTTAGCA-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNNTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCATCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGATAAANC-A-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTNACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTT--CCATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-T---TNCAATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAAT-ATTTTAAA-----C--A---TA--TCG---NTGGGATCAAGATGACCATAACTTTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G--------C-T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAA-TAN-A-NA--CCCANATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------NTCGNCAANAA-GT--CCATTTTTCA-TT--GN-T-----C--TA---A---G-AT-NCCGCC---------ATTTC-------TAAANACAATAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTCTTCAA--TANAATTAATTTGNCGTTG--AAGNTTTATAACGGTATCCGCGAA-ANTT-GCAACATCGTC-AGCGAAC-A--AA--G-GC--AT-TAAATCTG---GAATATCA----TCAGAAACGAAAATACCACGATCGCATTTTNCATNTAGAA-ANG-TAACTAAATCATTAATAAANAGAGAAAATANNATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATATTACATTTAAAAA-ATT----CAGT-TAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTAGT--TGGATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTATCGCACCA---------TTTCGTT-AA--CTATTA-A-TA----ACAT----ACTGACA-AATATTTTACATAAAGAATCNATNAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAAT----ATTATT--TTTCATACATATA--GGA--CAGAATCTTAAAT-TTTTAT-----CT-ATTGATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTT--CCATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-T---TACAATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAAT-ACTTTAAA-----C--A---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GA-------C-T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAA-TAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACAATAA-GT--CCACTTTTCT-GTAAGC-T-----T--GA---C---G-AT-GCCTCC---------ATTTC-------TAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAA--TACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTGCGAA-ACTT-GAAACATCATC-AGCAAAC-ATTAA--G-GCT-AC-TAACTCAT---TAATATCA----TCAGAAACAAATATACCACGATCACATTTAGAATGTAGAA-ATG-TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-TG-G-CCA-C--A-CAGCCTTGCCTGG-T-TCCAATGTTACATGGGAAAA-ACT----CAGT-TAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTAGTT-AAT-CTATTA-CTTA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATAC----ATTAGC--TTTA-TG-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCAAGACA-AGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATT--CCTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--A---GACAGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|14 : tCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTCGCT-AAATCTATTA-A-------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGgttttcaccattacataaaatagataatacatag
gi|16 : -ATTT-GCAACATCGTCTGGGGAAA-A--AG--G-GC--AT----ATCTG---GAATATCAGTGTTT---AATGAAAATACC-TGAAC------TGC---TAAAATAGGATAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTT--G-TTG-T--G-TCCCCCTGTCTCA-T-ACCTATAGTAAATTCTGAAA-ATTTGAACAGT-Tacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGC---TGC-ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGT----ATTTGTCCTTAAGCA-GTAAA--AG---CAGTATCTTAAAT-GCCTAT-----CA-GTTCCTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAATAAACC-CTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTC--TCATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-T---TACAATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAAC-ATTTTAAACCGGGC--A---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG--------CTT-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAA-AAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTGAAAA-AC--CCATTTTTCAGTTG-GT-T-----T--TA---A---A-AC-ACCACC---------ATTTC-------TGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAA--TATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-AACTAGAAACATCATC-AGCAAAT-AT-AA--GTGCG-AC-TAAATCT----TCATATCA----TTAGAAACAAAAATACCTCAATCGCATTTTTCATGTAGAA-AAG-TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-T--A-CCGAC--A-CAGCCCTGTCTTG-T-TTCAATATTACATTTAAAGA-AGT----GTGT-GAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTTGTTAAA--CGAATAGA-TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATATTCAGATTAGT------GAA-GTAAA--AGAGACAAAACTTT---TGTTCTAT-----TGGAATATTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATATT-TCATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGATAAAAC-A-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C---AAT--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATA-TGTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAAT-A----AAA-----CGAA---TAATTCATTTGTGGGG--AAG-TGACCATAAGGTT-GTTG-------ATAGT---G----AAGTATAG--AG-----A-ATATTGTTTT-T-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTA-TAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCAAGAA-ATTGCCATTTCTCA-TT--GT-T-----CCTTA---A---G-TT-TCCACC---------ATTTC-------TAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTA--CAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCGCGCA-ATTT-GCAACATCATC-AGCGAATAA--AA--G-GCATAT-TATATCTG---GAATATCA----GCGTTTATGAAAATACCTGAACCGCATCTTTCTTCTTAAA-AGGATAGATAACTCATTAATAACGAGAGAAAATATGGTTGTAC-T--AGTTG-T--GTCCGTC-TGTCTTG-T-ACCTATATTACATGTAAAAT-AT------AGT-T---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGAC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGATAAATC-A-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-T---TTAAATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCAT-----T--A---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATG-TAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-ATT--TG--------CCCCGTAATAT-GT--CCAGATTTCA-TT-----T-----C--TGCGTA---A-ATAGCTGCC---------GTTTC-------TAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAA-ACTTGAAATTAT-ATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CACTAC-AGTTGGCAATGTCATC-AGCATAC-A--AAATG-AA--ATATATATCTACATGAATACCA----TTTG---------TA-CATGATTG---TTTCCATTCA------T-CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTT--A-ATG-T--A-CAGCCTTGCC-TG-CAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT--TTAT-----C--TT---A---GTAT-ACCGAC---------ATTCC-------TAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAA--TGATATCAATCTGTGACTG--TAAGCCTATAACAGTAT-CACTAACGTTT-GCCAAATCATC-TGCATAC-A--
gi|5 : AGATCATTAATAGATAATGAGAATTAAATCATGT-TG-A-GTT-T--A-CACCCTTGCCGTG-T-ACCTATGTTACAATTAACAT-TTT----TATT-TA--CAATCATCAACCCTGACACATGtcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|5 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataTCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTCtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|6 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttAATAAAAATATTAAATAAAATCGTAC-TTAA-TTG----A-CAGCCTTGGC--GATAACCAACGTTACAATTGAAAATATT-----AGTATAAT-TATCACGATCGT--AC---TGATTTTGA--Tttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : tttacattgaattgcaagcattttgttagctaaagtccatcttggttttgttctgagtaaagaatagtatcatattttgaaacagtgacactgtttctactattttctcgtcaggtacctaatgttcatttactctgtgataattcccatttataaccactagtattactgatttcttcagatatatccgcatagcggttttatttgcaaaggttagataaaaattgttaaacagcatcactacaatttgccaaatcatcggaatatggtaccgcaaaaacatcatctactttgtgtataccattagcacagccgtgttttagttctaattcattaaccagctttcgAGATCATTAAT-AATAATGAGAATAAGATTGTGC-T--G-A-G-TAAA-CACCCTTACaattatactg
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCC------ATATAAATGAATTATCT---GT--TG--TACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCT--TCAAACCAATTATATAGTTT--TT-GA--ATATTC-A-TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G--------T-T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAA-TAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACGA-AA-GTG-CCATCATTCATTT--TG-T-----C--TT---ATCCC-CT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTA--CAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTACATA-ATAC-GCAACAGCGTC-TCCAAAC-A--AA--taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAAT-A----AAAAGGAAC--AATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G--------C-TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAAATTC-G-T---CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A-CAACAAAATTGT--C-ATTGCTCA-CT--GT-TTCTTAC--TA---G---G-TT-CCCACC---------ATTTC-------TAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|13 ): ATAATACAAGTAGTACGCAGTATTCAGTTCAGACATAAGATATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGTGACTGTAAGCCTATAACAGTGTCACTAACGTTTGCCAAATCATCTGCGTACATCACTGCAACGACATCTTCAGTTTCTGATATTTGTATTCCGCAGTGCTGATAATAGCTCCTTTCAGAT
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 333333333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 111 111 11111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 1111 222222222222 222222 11 111 11111 111 111 2222222222 6666666666666666666666666666666 11 1 111111 33333333333333333333 8888888888888888888888888888 11111 11111111 11111 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 44444444444444444444 11 111 1111111111 11 222222222222 2222 2222222 11111 3333333333333 1 222222222222222 11 1 22 1 1 222 111 1 222222 222222 2222222 77777777777777777777777777777777777777777777777777777 111111111 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 333333333333 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 11 1 1 22 8 1 11 1 777 555 5 8 1 22 0 88888 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 1111 6 777777777777 6 000000 22 1 111 1 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 1111111111111111111111111111111 33 0 666666 0 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 0 33333 3 3 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 8 5 6666 6666 77 11111111111111111111 6 33 22 222 000 0 8888888888 2 77 0 11 555555555555 3 2222 1111111 22 1 44 66666666 3 22 77777 66 11 11 33 0 4444444444444 5 0 8 5 1 1 0 6 444444444444444 3 1 3 99 3 33 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 1 333333 1 0 1 1 0 3 1 3 5555555 44 88888888888888888888888888888888888888888888888888888 999999999 8 0 0 1 1 1 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ............ .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... ... . . . .. . ..... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . .... . ............ . ...... .. . ... . ..... ... . .. . . ... . . . . . .......... . . ............................... .. . ...... . .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . . ..... . . ... .................................................................................................... . . . .... .... .. .................... . .. .. ... ... . .......... . .. . .. ............ . .... ....... .. . .. ........ . .. ..... .. .. .. .. . ............. . . . . . . . . ............... . . . .. . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . ...... . . . . . . . . ....... .. ..................................................... ......... . . . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 888888888888 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 66 4 0 00 0 0 00 4 444 222 6 0 4 00 8 66666 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 2222 7 888888888888 7 000000 77 0 777 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 2222222222222222222222222222222 88 6 888888 7 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 3 88888 2 7 777 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 9 7 0000 0000 99 33333333333333333333 7 00 00 444 000 9 1111111111 0 66 8 99 888888888888 8 2222 8888888 88 0 22 66666666 8 22 44444 99 11 00 00 2 6666666666666 0 9 4 7 4 0 3 7 777777777777777 8 0 2 44 8 88 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 0 000000 0 6 4 0 6 2 0 8 8888888 66 00000000000000000000000000000000000000000000000000000 666666666 0 8 6 0 0 0 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTATCG-ANTN-----CTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAAC--ACTC-G-TTAA-A-CGTTGCTTA-AAAATATNGATAAANC-A-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G---CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---AT-AGT--TT--------ATCCNCGANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---AG-A---T-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATAN--AAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATC-NGCGAACA--AA--G-GC-ATA-TANATCTG---GAATATCATCG-GNAACGAAAATACCTCGATCGCATTTTTCATNTAGAA-AGGATAACTAGATCATT--AATAAANAGAGAAAATAAGATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATGTTACATTTAAAAA-ATT----CAGT-TAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTATCG-ANTN-----CTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCNTCGTGCCANTTTTGNNA-ATAAC--ACTC-G-TTAA-A-CGTTGCTTA-AAAATATNGATAAANC-A-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATATTTTAAA----G---CA---TA--TCG---GTGGGATCAAGATGACCATAACGNTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---AT-AGT--TT--------ATCCGCGANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---AG-A---T-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATAN--AAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTCTTCAATANNATTAATCTGNNGTTG--AAGGTTTATAACAGTATCCG-CGA-A-ATTTGCAACATCGTC-AGCGAACA--AA--G-GC-AT--TANATCTG---GAATATCATCG-GAAACGAAAATACCNCGATCGCATTTTNCATNTAGAA-AGGATAACTAGATCATT--AATAAANAGAGAAAATAAGATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATGTTACATTTAAAAA-ATT----CAGT-TAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCTGTNGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACTGACA-AATATTTTACNCAAAGNATCNATNAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTATCT-ATTG-----ATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAGC--AGTC-T-TTAATG-CGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTTC--CATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA--------CA---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GAC--------T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---AT-AGT--TT--------CTCCACAATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---CG-A---T-GCCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATCG--AGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTG-CGA-A-ACTTGAAACATCATC-AGCAAACATTAA--G-GCTAC--TAACTCAT---TAATATCATCA-GAAACAAATATACCACGATCACATTTAGAATGTAGAA-ATG-TAACTAAATCATT--TATAAACATAGAAAAGATTATGGGGC-TG-G-CCA-C--A-CAGCCTTGCCTGG-T-TCCAATGTTACATGGGAAAA-ACT----CAGT-TAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-CT---------TA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCA-AGACAAGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAA-AACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATTC--CTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-CA-CTA-ACGTTTGCCAAATCATC-TGCGTACA--gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-A----------------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGtcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAAA--AG--G-GC-AT-----ATCTG---GAATATCAGTGTTTAATGAAAATACCTGAACTGC----------TAAAATAGGATAAATAACTCATT--AACAAAGAGTAAAAATAAGGTCGTACTT--G-TTG-T--G-TCCCCCTGTCTCA-T-ACCTATAGTAAATTCTGAAA-ATTTGAACAGT-Tacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTATCA-GTTC-----CTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAAC--ATTC-AATTAA-A-CGTTGCTTA-AAAATATTAATAAACC-CTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTCT--CATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGG---CA---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG-CT-------T-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---ATAAGT--TC--------GTTGTTGAAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---AA-A---C-ACCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACTT--AAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-A-ACTAGAAACATCATC-AGCAAATAT-AA--GTGCGAC--TAAATCT----TCATATCATTA-GAAACAAAAATACCTCAATCGCATTTTTCATGTAGAA-AAG-TAACAAGATTGTT--GATGAAAAGAGAAAATATCATAGGGC-T--A-CCGAC--A-CAGCCCTGTCTTG-T-TTCAATATTACATTTAAAGA-AGT----GTGT-GAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTATTGGAATA-----TTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGAT--ATCC-A-CCAA-T-CTTTGCTTA-AAAACAGAGATAAAAC-A-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C-AA--T--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATA----AAAC---G---AA---TAATTCATTTGTGGGG--AAG-TGACCATAA-GGTTGTTG-------ATAGT---G----AAGTATAG--AG-----A-A-TATTGTTTTT-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---AT-G----TG--------ATTGCCAAGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---AG-T---T-TCCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATAC--AAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCG-CGC-A-ATTTGCAACATCATC-AGCGAATA--AAA-G-GC-ATATTATATCTG---GAATATCAGCG-TTTATGAAAATACCTGAACCGCATCTTTCTTCTTAAA-AGGATAGATAACTCATT--AATAACGAGAGAAAATATGGTTGTAC-T--AGTTG-T--GTCCGTC-TGTCTTG-T-ACCTATATTACATGTAAAAT-AT------AGT-T---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGACC--ACTCTG-TTAC-A-CGTTGTTTA-AATCTTAAGATAAATC-A-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCA----T---TA---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGAT-ATT--TG--------CCCCGTAATAT----GT--CCAGATTTCA-T---T----T-----C--TGCGTAA-A---TAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CA-CTACA-GTTGGCAATGTCATC-AGCATACA--AAATG-AA-ATA-TATATCTACATGAATACCATTT-G---------TA-CATGATTG---TTTCCATTCAT-------CAACTAAATCATT--AATAAAAAGATTAAATAAAATCGTGCTT--A-ATG-T--A-CAGCCTTGCC-TG-CAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---AGTA---T-ACCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTAC--A--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTAT-CA-CTA-ACGTTTGCCAAATCATC-TGCATACA--
gi|5 : AGATCATT--AATAGATAATGAGAATTAAATCATGT-TG-A-GTT-T--A-CACCCTTGCCGTG-T-ACCTATGTTACAATTAACAT-TTT----TATT-TA--CAATCATCAACCCTGACACATGtcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|5 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataTCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCAT----GCCTGTA-AGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|6 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttTAACCAGCT--TTCGAATAAAAATATTAAATAAAATCGTAC-TTAA-TTG----A-CAGCCTTGGC--GATAACCAACGTTACAATTGAAAATATT-----AGTATAAT-TATCACGATCGT--AC---TGATTTTGA--Tatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : tttacattgaattgcaagcattttgttagctaaagtccatcttggttttgttctgagtaaagaatagtatcatattttgaaacagtgacactgtttctactattttctcgtcaggtacctaatgttcatttactctgtgataattcccatttataaccactagtattactgatttcttcagatatatccgcatagcggttttatttgcaaaggttagataaaaattgttaaacagcatcactacaatttgccaaatcatcggaatatggtaccgcaaaaacatcatctactttgtgtataccattagcacagccgtgttttagttctaattcatAGATCATT--AATAA-TAATGAGAATAAGATTGTGC-T--G-A-G-TAAA-CACCCTTACaattatactg
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCT--TCAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G-T--------T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAAA---------CTTTT---GTTACT--TTGATTTGAGATCCACGA-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---AT-CCCCT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAATT-CAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAATT--TCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTA-CAT-A-ATACGCAACAGCGTC-TCCAAACA--AA--taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAA----GGAACAATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G-C--------TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---AT--GTGATT--------A----CAACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---GG-T---T-CCCACC----------------ATTTCTAAATACAATAATTTC-ATTT-----G--AA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaaata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 333333333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 111 11111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 1111 222222222222 222222 11 111 11111 111 111 2222222222 1111 55555555555555555555555 11 1 11111 33333333333333333333 8888888888888888888888888888 11111 11111111 1111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 44444444444444444444 1111 1 333333333333333333333333333333333333 333333333333 11 11111 22222222 3333333333333 1 222222222222222 11 1 22 1 1 222 111 1 222222 222222 2222222 77777777777777777777777777777777777777777777777777777 222222222 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 333333333333 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 22 1 1 22 8 1 11 1 777 8 8 5 8 1 22 0 88888 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 1111 6 777777777777 6 000000 22 1 111 1 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 5555 11111111111111111111111 33 0 55555 0 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 7777777 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 8 5 6666 6666 77 11111111111111111111 6 99 22 111 888 0 4444 1 5 0 1 2 999999999999999999999999999999999999 444444444444 99 33 99 44444 44 3 66666666 44 66 11 11 33 0 4444444444444 5 0 8 5 1 1 0 6 444444444444444 3 1 3 99 3 33 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 4 1 333333 1 0 1 1 0 3 1 3 5555555 8 88888888888888888888888888888888888888888888888888888 111111111 8 0 0 1 1 3 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ............ .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... . . . . . .. . ..... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . .... . ............ . ...... .. . ... . ..... ... . .. . . ... . . . . . .......... . . .... ....................... .. . ..... . .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . ....... . ............................................................................................................ . . . . .... .... .. .................... . .. .. ... ... . .... . . . . . .................................... ............ .. .. .. ..... .. . ........ .. .. .. .. .. . ............. . . . . . . . . ............... . . . .. . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . . ...... . . . . . . . . ....... . ..................................................... ......... . . . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 888888888888 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 00 4 0 00 0 0 00 4 444 0 0 6 0 4 00 8 66666 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 2222 7 888888888888 7 000000 77 0 777 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 6666 44444444444444444444444 88 6 88888 7 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 2222222 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 9 7 0000 0000 99 33333333333333333333 7 00 00 777 999 4 4444 0 7 0 0 6 999999999999999999999999999999999999 333333333333 22 33 22 88888 00 3 55555555 66 99 11 00 00 2 6666666666666 0 9 4 7 4 0 3 7 777777777777777 8 0 2 44 8 88 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 6 4 000000 0 6 4 0 6 2 0 8 8888888 8 00000000000000000000000000000000000000000000000000000 444444444 0 8 6 4 4 2 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTATCG-ANTN-----CTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGATAAANC-A-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACAT------AA--G-G-CATA-T-ANA---TCTG---GAATATCATCGG--AACGAAAATA--CCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATT--AATAAANAGAGAAAATAAGATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATGTTACATTTAAAAA-ATT----CAGT-TAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTATCG-ANTN-----CTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGATAAANC-A-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGAACA-------AA--G-G-CATA-T-ANA---TCTG---GAATATCATCGGN-AACGAAAATA--CCTC-GAT--CG--CATTTTTCATNTAGAA-AGGATAACTAGATCATT--AATAAANAGAGAAAATAAGATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATGTTACATTTAAAAA-ATT----CAGT-TAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTATCT-ATTG-----ATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTTC--CATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA-------CA---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GAC--------T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACA--ATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---C---G-AT-GCCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTG-CGA-A-ACTTGAAACATCATCAGCAAACATT-----AA--G-G-C-TACT-AAC---TCAT---TAATATCATCAGA-AACAAATATA--CCAC-GAT--CA--CATTTAGAATGTAGAA-ATG-TAACTAAATCATT--TATAAACATAGAAAAGATTATGGGGC-TG-G-CCA-C--A-CAGCCTTGCCTGG-T-TCCAATGTTACATGGGAAAA-ACT----CAGT-TAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-CT---------TA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCA-AGACAAGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATTC--CTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-CA-CTA-ACGTTTGCCAAATCATCTGCGTACA-------gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-A----------------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGtcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAA-------AA--G-GGCATA-T--------CTG---GAATATCAGTGTTTAATGAAAATA--CCTG-AAC--TG--C----------TAAAATAGGATAAATAACTCATT--AACAAAGAGTAAAAATAAGGTCGTACTT--G-TTG-T--G-TCCCCCTGTCTCA-T-ACCTATAGTAAATTCTGAAA-ATTTGAACAGT-Tacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTATCA-GTTC-----CTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAATAAACC-CTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTCT--CATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGG--CA---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG-CT-------T-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTG--AAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---A---A-AC-ACCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-A-ACTAGAAACATCATCAGCAAATAT------AA--GTG-CGAC-T-AAA---TCT----TCATATCATTAGA-AACAAAAATA--CCTC-AAT--CG--CATTTTTCATGTAGAA-AAG-TAACAAGATTGTT--GATGAAAAGAGAAAATATCATAGGGC-T--A-CCGAC--A-CAGCCCTGTCTTG-T-TTCAATATTACATTTAAAGA-AGT----GTGT-GAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTATTGGAATA-----TTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGATAAAAC-A-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C-AA--T--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATA----AAAC---G--AA---TAATTCATTTGTGGGG--AAG-TGACCATAA-GGTTGTTG-------ATAGT---G----AAGTATAG--AG-----A-A-TATTGTTTTT-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCA--AGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---A---G-TT-TCCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCG-CGC-A-ATTTGCAACATCATCAGCGAATA-------AAA-G-G-CATA-TTATA---TCTG---GAATATCAGCGTT-TATGAAAATA--CCTG-AAC--CG--CATCTTTCTTCTTAAA-AGGATAGATAACTCATT--AATAACGAGAGAAAATATGGTTGTAC-T--AGTTG-T--GTCCGTC-TGTCTTG-T-ACCTATATTACATGTAAAAT-AT------AGT-T---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGAC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGATAAATC-A-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCAT------TA---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-A-T--TT--------G-CCCCGTAATAT----GT--CCAGATTTCA-T---T----T-----C--TGCGTA---A-ATAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CA-CTACA-GTTGGCAATGTCATCAGCATACA-------AAATG-A-AATA-T-ATA---TCTACATGAATACCATTTG----------TA--CAT--GAT--TG-----TTTCCATTCAT-------CAACTAAATCATT--AATAAAAAGATTAAATAAAATCGTGCTT--A-ATG-T--A-CAGCCTTGCC-TG-CAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---A---GTAT-ACCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTATC-A-CTA-ACGTTTGCCAAATCATCTGCATACATCACTGCAAT-G-A-CATA-T-TCAGTTTCTG-----ATAT--TTG-----------TAGTCCTCTGATATCGGCTACTTTTAATTCATCA-A---TAA---GATCATT--AATAGATAATGAGAATTAAATCATGT-TG-A-GTT-T--A-CACCCTTGCCGTG-T-ACCTATGTTACAATTAACAT-TTT----TATT-TA--CAATCATCAACCCTGACACATG
gi|5 : TCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCAT----GCCTGTA-AGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|6 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttTAACCAGCT--TTCGAATAAAAATATTAAATAAAATCGTAC-TTAA-TTG----A-CAGCCTTGGC--GATAACCAACGTTACAATTGAAAATATT-----AGTATAAT-TATCACGATCGT--AC---TGATTTTGA--Tatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : tttacattgaattgcaagcattttgttagctaaagtccatcttggttttgttctgagtaaagaatagtatcatattttgaaacagtgacactgtttctactattttctcgtcaggtacctaatgttcatttactctgtgataattcccatttataaccactagtattactgatttcttcagatatatccgcatagcggttttatttgcaaaggttagataaaaattgttaaacagcatcactacaatttgccaaatcatcggaatatggtaccgcaaaaacatcatctactttgtgtataccattagcacagccgtgttttagttctaattcatAGATCATT--AATAA-TAATGAGAATAAGATTGTGC-T--G-A-G-TAAA-CACCCTTACaattatactg
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCTT--CAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G-T--------T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACG--A-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---ATCCC-CT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTA-CAT-A-ATACGCAACAGCGTCTCCAAACA-------AA--taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAAG---GAACAATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G-C--------TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A----CA--ACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---G---G-TT-CCCACC----------------ATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaaata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 33333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 111 1111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 222222222222222222222 222222 222222 11111 111 111 2222222222 1111 55555555555555555555555 11 1 11111 33333333333333333333 8888888888888888888888888888 11111 11111111 1111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 44444444444444444444 1111 1 22222222 1 222222222 22222 4444444444444 11 11111 22222 3333333333333 1 222222222222222 11 1 22 1 1 222 111 1 222222 222222 2222222 77777777777777777777777777777777777777777777777777777 222222222 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 33333333 1 11 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 22 1 1 22 8 1 11 1 777 8 8 5 8 1 22 0 8 0000 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 444444444444444444444 6 000000 222222 1 5 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 5555 11111111111111111111111 33 0 55555 0 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 7777777 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 8 5 6666 6666 77 11111111111111111111 6 99 22 111 888 0 4444 1 5 0 1 1 33333333 1 6 1 000000000 33333 4444444444444 33 99 44444 44 3 44 00000 44 66 11 11 33 0 4444444444444 5 0 8 5 1 1 0 6 444444444444444 3 1 3 99 3 33 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 4 1 333333 1 0 1 1 0 3 1 3 5555555 8 88888888888888888888888888888888888888888888888888888 111111111 8 0 0 1 1 3 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ........ . .. .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... . . . . . .. . . .... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . ..................... . ...... ...... . . ..... ... . .. . . ... . . . . . .......... . . .... ....................... .. . ..... . .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . ....... . ............................................................................................................ . . . . .... .... .. .................... . .. .. ... ... . .... . . . . . ........ . . . ......... ..... ............. .. .. ..... .. . .. ..... .. .. .. .. .. . ............. . . . . . . . . ............... . . . .. . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . . ...... . . . . . . . . ....... . ..................................................... ......... . . . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 22222222 0 22 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 00 4 0 00 0 0 00 4 444 0 0 6 0 4 00 8 0 6666 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 555555555555555555555 7 000000 222222 0 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 6666 44444444444444444444444 88 6 88888 7 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 2222222 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 9 7 0000 0000 99 33333333333333333333 7 00 00 777 999 4 4444 0 7 0 0 0 44444444 4 7 7 888888888 55555 2222222222222 33 22 88888 00 3 22 88888 66 99 11 00 00 2 6666666666666 0 9 4 7 4 0 3 7 777777777777777 8 0 2 44 8 88 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 6 4 000000 0 6 4 0 6 2 0 8 8888888 8 00000000000000000000000000000000000000000000000000000 444444444 0 8 6 4 4 2 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTT--CCATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-T---TNCAATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G--------C-T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-N------AA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATT--AATAAANAGAGAAAATAAGATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATGTTACATTTAAAAA-ATT----CAGT-TAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAANCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTT--CCATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-T---TNCAATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G--------C-T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-T------AA-G-GCATA-TANA---TCTG---GAATATCATC-G--GAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATT--AATAAANAGAGAAAATAAGATCGTGC-T--A-NCG-T--A-CAGCCTTGCCTTG-T-ACCNATGTTACATTTAAAAA-ATT----CAGT-TAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTAT-----CT-ATTGATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTT--CCATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-T---TACAATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA-------CA---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GA-------C-T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACA--ATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---C---G-AT-GCCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTG-CGA-A-ACTTGAAACATCATCAGCAAACATT------AA-G-GC-TACTAAC---TCAT---TAATATCATCAG--AAACAAATATACCAC-GAT--CA--CATTTAGAATGTAGAA-ATG-TAACTAAATCATT--TATAAACATAGAAAAGATTATGGGGC-TG-G-CCA-C--A-CAGCCTTGCCTGG-T-TCCAATGTTACATGGGAAAA-ACT----CAGT-TAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-CT---------TA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCAAGACA-AGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATT--CCTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--A---GACAGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-CA-CTA-ACGTTTGCCAAATCATCTGCGTACA-T------gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-A----------------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAA-A------AG-G-GCAT-----A---TCTG---GAATATCAGT-GTTTAATGAAAATACCTG-AAC--TG--C----------TAAAATAGGATAAATAACTCATT--AACAAAGAGTAAAAATAAGGTCGTACTT--G-TTG-T--G-TCCCCCTGTCTCA-T-ACCTATAGTAAATTCTGAAA-ATTTGAACAGT-Tacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGC---TGC-ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTAT-----CA-GTTCCTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAAT-AAACCCTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTC--TCATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-T---TACAATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGG--CA---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG--------CTT-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTG--AAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---A---A-AC-ACCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-A-ACTAGAAACATCATCAGCAAATA-T------AA-GTGCGAC-TAAA---TCT----TCATATCATTAG--AAACAAAAATACCTC-AAT--CG--CATTTTTCATGTAGAA-AAG-TAACAAGATTGTT--GATGAAAAGAGAAAATATCATAGGGC-T--A-CCGAC--A-CAGCCCTGTCTTG-T-TTCAATATTACATTTAAAGA-AGT----GTGT-GAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTAT-----TGGAATATTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGAT-AAAACA-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C---AAT--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATA-TGTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATA----AAAC---G--AA---TAATTCATTTGTGGGG--AAG-TGACCATAA-GGTTGTTG-------ATAGT---G----AAGTATAG--AG-----A-ATATTGTTTT-T-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCA--AGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---A---G-TT-TCCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCG-CGC-A-ATTTGCAACATCATCAGCGAATA-A------AA-G-GCATATTATA---TCTG---GAATATCAGC-GT-TTATGAAAATACCTG-AAC--CG--CATCTTTCTTCTTAAA-AGGATAGATAACTCATT--AATAACGAGAGAAAATATGGTTGTAC-T--AGTTG-T--GTCCGTC-TGTCTTG-T-ACCTATATTACATGTAAAAT-AT------AGT-T---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGAC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGAT-AAATCA-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-T---TTAAATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCAT------TA---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-A-T--TT--------G-CCCCGTAATAT----GT--CCAGATTTCA-T---T----T-----C--TGCGTA---A-ATAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CA-CTACA-GTTGGCAATGTCATCAGCATACA-A------AATG-AAATA-TATA---TCTACATGAATACCATT-T--G--------TACAT--GAT--TG-----TTTCCATTCAT-------CAACTAAATCATT--AATAAAAAGATTAAATAAAATCGTGCTT--A-ATG-T--A-CAGCCTTGCC-TG-CAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---A---GTAT-ACCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTATC-A-CTA-ACGTTTGCCAAATCATCTGCATACA-TCACTGCAATG-ACATA-TTCAGTTTCTG-----ATAT--TT-G--TAGT-------CCTCTGATATCGGCTACTTTTAATTCATCA-A---TAA---GATCATT--AATAGATAATGAGAATTAAATCATGT-TG-A-GTT-T--A-CACCCTTGCCGTG-T-ACCTATGTTACAATTAACAT-TTT----TATT-TA--CAATCATCAACCCTGACACATG
gi|5 : TCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCAT----GCCTGTA-AGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|6 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggtt-TAACCAGCT--TTCGAATAAAAATATTAAATAAAATCGTAC-TTAA-TTG----A-CAGCCTTGGC--GATAACCAACGTTACAATTGAAAATATT-----AGTATAAT-TATCACGATCGT--AC---TGATTTTGA--Tatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : tttacattgaattgcaagcattttgttagctaaagtccatcttggttttgttctgagtaaagaatagtatcatattttgaaacagtgacactgtttctactattttctcgtcaggtacctaatgttcatttactctgtgataattcccatttataaccactagtattactgatttcttcagatatatccgcatagcggttttatttgcaaaggttagataaaaattgttaaacagcatcactacaatttgccaaatcatcggaatatggtaccgcaaaaacatcatctactttgtgtataccattagcacagccgtgttttagttctaattcatAGATCATT--AATAA-TAATGAGAATAAGATTGTGC-T--G-A-G-TAAA-CACCCTTACaattatactg
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCTT--CAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G--------T-T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACG--A-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---ATCCC-CT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTA-CAT-A-ATACGCAACAGCGTCTCCAAACA-A------AA-taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAAG---GAACAATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G--------C-TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A----CA--ACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---G---G-TT-CCCACC----------------ATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 33333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 111 1111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 1111 222222222222 222222 11 111 11111 111 111 2222222222 1111 55555555555555555555555 11 1 11111 33333333333333333333 8888888888888888888888888888 11111 11111111 1111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 44444444444444444444 1111 1 22222222 1 222222222 22222 3333333333333 11 11111 22222 33333333333333 222222 222222 11 1 22 1 1 222 111 1 222222 222222 2222222 77777777777777777777777777777777777777777777777777777 222222222 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 33333333 1 11 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 22 1 1 22 8 1 11 1 777 8 8 5 8 1 22 0 8 0000 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 1111 6 777777777777 6 000000 22 1 111 1 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 5555 11111111111111111111111 33 0 55555 0 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 7777777 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 8 5 6666 6666 77 11111111111111111111 6 99 22 111 888 0 4444 1 5 0 1 1 22222222 1 6 1 000000000 33333 7777777777777 33 99 44444 44 3 44 22222 6 22 2 33 1 00000000000000 0 2 3 6 1 0 0 1 111111 333333 0 4 0 7 2 88 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 4 1 333333 1 0 1 1 0 3 1 3 5555555 8 88888888888888888888888888888888888888888888888888888 111111111 8 0 0 1 1 3 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ........ . .. .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... . . . . . .. . . .... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . .... . ............ . ...... .. . ... . ..... ... . .. . . ... . . . . . .......... . . .... ....................... .. . ..... . .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . ....... . ............................................................................................................ . . . . .... .... .. .................... . .. .. ... ... . .... . . . . . ........ . . . ......... ..... ............. .. .. ..... .. . .. ..... . .. . .. . .............. . . . . . . . . ...... ...... . . . . . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . . ...... . . . . . . . . ....... . ..................................................... ......... . . . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 22222222 0 22 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 00 4 0 00 0 0 00 4 444 0 0 6 0 4 00 8 0 8888 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 2222 7 888888888888 7 000000 77 0 777 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 6666 44444444444444444444444 88 6 88888 7 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 2222222 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 9 7 0000 0000 99 33333333333333333333 7 00 00 777 999 4 4444 0 7 0 0 0 44444444 4 7 7 888888888 55555 3333333333333 33 22 88888 00 3 22 77777 7 44 1 99 7 00000000000000 7 3 2 7 0 7 6 4 000000 555555 2 5 2 0 5 33 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 6 4 000000 0 6 4 0 6 2 0 8 8888888 8 00000000000000000000000000000000000000000000000000000 444444444 0 8 6 4 4 2 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-N------AA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-G-NCG-T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-N------AA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGAGAAAATAAGATCGTGC-T-A-NCG-T--A-CAGCCTTGCCTTGT-ACCNATGTTACATTTAAAAAATT----CAGTTAATCTATCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTAT-----CT-ATTGATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTTC--CATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA-------CA---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GAC--------T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACA--ATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---C---G-AT-GCCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTG-CGA-A-ACTTGAAACATCATCAGCAAACATT------AA-G-GC-TACTAAC---TCAT---TAATATCATCAG--AAACAAATATACCAC-GAT--CA--CATTTAGAATGTAGAA-ATG-TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-TGG-CCA-C--A-CAGCCTTGCCTGGT-TCCAATGTTACATGGGAAAAACT----CAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-CT---------TA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCAAGACA-AGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATTC--CTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-CA-CTA-ACGTTTGCCAAATCATCTGCGTACA-gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-A----------------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGtcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAA-A------AG-G-GCAT-----A---TCTG---GAATATCAGT-GTTTAATGAAAATACCTG-AAC--TG--C----------TAAAATAGGATAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTT-G-TTG-T--G-TCCCCCTGTCTCAT-ACCTATAGTAAATTCTGAAAATTTGAACAGTTacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTAT-----CA-GTTCCTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAAT-AAACCCTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTCT--CATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGG--CA---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG-CT-------T-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTG--AAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---A---A-AC-ACCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-A-ACTAGAAACATCATCAGCAAATA-T------AA-GTGCGAC-TAAA---TCT----TCATATCATTAG--AAACAAAAATACCTC-AAT--CG--CATTTTTCATGTAGAA-AAG-TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-T-A-CCGAC--A-CAGCCCTGTCTTGT-TTCAATATTACATTTAAAGAAGT----GTGTGAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTAT-----TGGAATATTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGAT-AAAACA-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C-AA--T--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATA----AAAC---G--AA---TAATTCATTTGTGGGG--AAG-TGACCATAA-GGTTGTTG-------ATAGT---G----AAGTATAG--AG-----A-A-TATTGTTTTT-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCA--AGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---A---G-TT-TCCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCG-CGC-A-ATTTGCAACATCATCAGCGAATA-A------AA-G-GCATATTATA---TCTG---GAATATCAGC-GT-TTATGAAAATACCTG-AAC--CG--CATCTTTCTTCTTAAA-AGGATAGATAACTCATTAATAACGAGAGAAAATATGGTTGTAC-T-AGTTG-T--GTCCGTC-TGTCTTGT-ACCTATATTACATGTAAAATAT------AGTT---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGAC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGAT-AAATCA-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCAT------TA---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-A-T--TT--------G-CCCCGTAATAT----GT--CCAGATTTCA-T---T----T-----C--TGCGTA---A-ATAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CA-CTACA-GTTGGCAATGTCATCAGCATACA-A------AATG-AAATA-TATA---TCTACATGAATACCATT-T--G--------TACAT--GAT--TG-----TTTCCATTCAT-------CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTT-A-ATG-T--A-CAGCCTTGCC-TGCAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---A---GTAT-ACCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTATC-A-CTA-ACGTTTGCCAAATCATCTGCATACA-TCACTGCAATG-ACATA-TTCAGTTTCTG-----ATAT--TT-G--TAGT-------CCTCTGATATCGGCTACTTTTAATTCATCA-A---TAA---GATCATTAATAGATAATGAGAATTAAATCATGT-TGA-GTT-T--A-CACCCTTGCCGTGT-ACCTATGTTACAATTAACATTTT----TATTTA--CAATCATCAACCCTGACACATG
gi|5 : TCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCAT----GCCTGTA-AGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttAGATCATTAATAA-TAATGAGAATAAGATTGTGC-T-G-A-G-TAAA-CACCCTTACatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCTT--CAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G-T--------T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACG--A-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---ATCCC-CT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTA-CAT-A-ATACGCAACAGCGTCTCCAAACA-A------AA-taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAAG---GAACAATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G-C--------TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A----CA--ACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---G---G-TT-CCCACC----------------ATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTACATTGAATTGCAAGCATTTTGTTAGCTAAAGTCCATCTTGGTTTTGTTCTGAGTAAAGAATAGTATCATATTTTGAAACAGTGACACTGTTTCTACTATTTTCTCGTCAGGTACCTAATGTTCATTTACTCTGTGATAATTCCCATTTATAACCACTAGTATTACTGATTTCTTCAGATATATCCGCATAGCGGTTTTATTTGCAAAGGTTAGATAAAAATTGTTAAACAGCATCACTACAATTTGCCAAATCATCGGAATATGGTACCGCAAAAACATCATCTACTTTGTGTATACCATTAGCACAGCCGTGTTTTAGTTCTAATTCATTAACCAGCTTTCGAATAAAAATATTAAATAAAATCGTACTTAATTGACAGCCTTGGCGATAACCAACGTTACAATTGAAAATATTAGTATAATTATCACGATCGTACTGATTTTGATAATTATACTG
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 33333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 111 1111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 1111 222222222222 222222 11 111 11111 111 111 2222222222 1111 55555555555555555555555 11 1 11111 33333333333333333333 8888888888888888888888888888 11111 11111111 1111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 44444444444444444444 1111 1 2222222 1 2222222222222222 33333333333333 22222 11111 22222 33333333333333 222222 222222 11 1 22 1 1 222 111 1 222222 222222 2222222 77777777777777777777777777777777777777777777777777777 222222222 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 33333333 1 11 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 22 1 1 22 8 1 11 1 777 8 8 5 8 1 22 0 8 0000 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 1111 6 777777777777 6 000000 22 1 111 1 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 5555 11111111111111111111111 33 0 55555 0 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 7777777 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 8 5 6666 6666 77 11111111111111111111 6 99 22 111 888 0 4444 1 5 0 1 1 0000000 1 6 1 5555555555555555 77777777777777 00000 44444 44 3 44 22222 44 0 1 1 22 1 00000000000000 0 2 3 6 1 0 1 111111 666666 0 4 0 7 2 88 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 4 1 333333 1 0 1 1 0 3 1 3 5555555 8 88888888888888888888888888888888888888888888888888888 111111111 8 0 0 1 1 3 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ........ . .. .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... . . . . . .. . . .... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . .... . ............ . ...... .. . ... . ..... ... . .. . . ... . . . . . .......... . . .... ....................... .. . ..... . .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . ....... . ............................................................................................................ . . . . .... .... .. .................... . .. .. ... ... . .... . . . . . ....... . . . ................ .............. ..... ..... .. . .. ..... .. . . . .. . .............. . . . . . . . ...... ...... . . . . . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . . ...... . . . . . . . . ....... . ..................................................... ......... . . . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 22222222 0 22 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 00 4 0 00 0 0 00 4 444 0 0 6 0 4 00 8 0 8888 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 2222 7 888888888888 7 000000 77 0 777 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 6666 44444444444444444444444 88 6 88888 7 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 2222222 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 9 7 0000 0000 99 33333333333333333333 7 00 00 777 999 4 4444 0 7 0 0 0 4444444 4 7 7 7777777777777777 33333333333333 55555 88888 00 3 22 77777 22 1 0 0 77 7 66666666666666 7 3 2 7 0 6 4 000000 000000 2 5 2 0 5 33 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 6 4 000000 0 6 4 0 6 2 0 8 8888888 8 00000000000000000000000000000000000000000000000000000 444444444 0 8 6 4 4 2 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA------AAA-G-GCATA-TANA---TCTG---GAATATCATC-G-N--AACGAAAATACCTC-G--ATCG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG--T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA------NAA-G-GCATA-TANA---TCTG---GAATATCATC-G-N--AACGAAAATACCTC-G--ATCG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG--T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTAT-----CT-ATTGATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTTC--CATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA-------CA---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GAC--------T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACA--ATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---C---G-AT-GCCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTG-CGA-A-ACTTGAAACATCATCAGCAAACAT-----TAA-G-GC-TACTAAC---TCAT---TAATATCATCAG-A--AACAAATATACCAC-G--ATCA--CATTTAGAATGTAGAA-ATG-TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-TGGCCA--C--A-CAGCCTTGCCTGGT-TCCAATGTTACATGGGAAAAACT----CAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-CT---------TA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCAAGACA-AGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATTC--CTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-CA-CTA-ACGTTTGCCAAATCATCTGCGTACA------gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-A----------------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGtcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAA------AAG-G-GCATA-T-------CTG---GAATATCAGT-G-TTTAATGAAAATACCTG-A--ACTG--C----------TAAAATAGGATAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTT-GTTG--T--G-TCCCCCTGTCTCAT-ACCTATAGTAAATTCTGAAAATTTGAACAGTTacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTAT-----CA-GTTCCTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAAT-AAACCCTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTCT--CATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGG--CA---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG-CT-------T-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTG--AAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---A---A-AC-ACCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-A-ACTAGAAACATCATCAGCAAATA------TAA-GTGCGAC-TAAA---TCT----TCATATCATTAG-A--AACAAAAATACCTC-A--ATCG--CATTTTTCATGTAGAA-AAG-TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-T-ACCGA-C--A-CAGCCCTGTCTTGT-TTCAATATTACATTTAAAGAAGT----GTGTGAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTAT-----TGGAATATTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGAT-AAAACA-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C-AA--T--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATA----AAAC---G--AA---TAATTCATTTGTGGGG--AAG-TGACCATAA-GGTTGTTG-------ATAGT---G----AAGTATAG--AG-----A-A-TATTGTTTTT-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCA--AGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---A---G-TT-TCCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCG-CGC-A-ATTTGCAACATCATCAGCGAATA------AAA-G-GCATATTATA---TCTG---GAATATCAGC-GTT--TATGAAAATACCTG-A--ACCG--CATCTTTCTTCTTAAA-AGGATAGATAACTCATTAATAACGAGAGAAAATATGGTTGTAC-TAGTTG--T--GTCCGTC-TGTCTTGT-ACCTATATTACATGTAAAATAT------AGTT---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGAC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGAT-AAATCA-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCAT------TA---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-A-T--TT--------G-CCCCGTAATAT----GT--CCAGATTTCA-T---T----T-----C--TGCGTA---A-ATAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CA-CTACA-GTTGGCAATGTCATCAGCATACA------AAATG-AAATA-TATA---TCTACATGAATACCATT-T-G----------TACAT--G--ATTG-----TTTCCATTCAT-------CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTT-AATG--T--A-CAGCCTTGCC-TGCAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---A---GTAT-ACCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTAT-CA-CTA-ACGTTTGCCAAATCATCTGCATACATCACTGCAATG-ACATA-TTCAGTTTCTG-----ATAT--TT-G-T--AGT-------CCTCTGATATCGGCTACTTTTAATTCATCA-A---TA---AGATCATTAATAGATAATGAGAATTAAATCATGT-T-GA-GTTT--A-CACCCTTGCCGTGT-ACCTATGTTACAATTAACATTTT----TATTTA--CAATCATCAACCCTGACACATG
gi|5 : TCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCAT----GCCTGTA-AGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttAGATCATTAAT-AATAATGAGAATAAGATTGTGC-T-GA-G--TAAA-CACCCTTACatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCTT--CAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G-T--------T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACG--A-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---ATCCC-CT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTA-CAT-A-ATACGCAACAGCGTCTCCAAACA------AAA-taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAAG---GAACAATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G-C--------TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A----CA--ACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---G---G-TT-CCCACC----------------ATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTACATTGAATTGCAAGCATTTTGTTAGCTAAAGTCCATCTTGGTTTTGTTCTGAGTAAAGAATAGTATCATATTTTGAAACAGTGACACTGTTTCTACTATTTTCTCGTCAGGTACCTAATGTTCATTTACTCTGTGATAATTCCCATTTATAACCACTAGTATTACTGATTTCTTCAGATATATCCGCATAGCGGTTTTATTTGCAAAGGTTAGATAAAAATTGTTAAACAGCATCACTACAATTTGCCAAATCATCGGAATATGGTACCGCAAAAACATCATCTACTTTGTGTATACCATTAGCACAGCCGTGTTTTAGTTCTAATTCATTAACCAGCTTTCGAATAAAAATATTAAATAAAATCGTACTTAATTGACAGCCTTGGCGATAACCAACGTTACAATTGAAAATATTAGTATAATTATCACGATCGTACTGATTTTGATAATTATACTG
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 33333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 111 1111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 1111 222222222222 222222 11 111 11111 111 111 2222222222 1111 55555555555555555555555 11 1 11111 33333333333333333333 8888888888888888888888888888 11111 11111111 1111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 44444444444444444444 1111 1 2222222 222222222 22222 3333333333333 11 11111 22222 3333333333333 222222 222222 11 1 22 1 1 222 111 1 222222 222222 2222222 77777777777777777777777777777777777777777777777777777 222222222 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 33333333 1 11 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 22 1 1 22 8 1 11 1 777 8 8 5 8 1 22 0 8 0000 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 1111 6 777777777777 6 000000 22 1 111 1 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 5555 11111111111111111111111 33 0 55555 0 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 7777777 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 8 5 6666 6666 77 11111111111111111111 6 99 22 111 888 0 4444 1 5 0 1 1 1111111 5 6 1 000000000 33333 7777777777777 33 99 44444 44 3 44 22222 6 0 1 1 22 1 0000000000000 0 2 3 6 1 0 1 111111 666666 0 4 0 7 2 88 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 4 1 333333 1 0 1 1 0 3 1 3 5555555 8 88888888888888888888888888888888888888888888888888888 111111111 8 0 0 1 1 3 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ........ . .. .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... . . . . . .. . . .... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . .... . ............ . ...... .. . ... . ..... ... . .. . . ... . . . . . .......... . . .... ....................... .. . ..... . .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . ....... . ............................................................................................................ . . . . .... .... .. .................... . .. .. ... ... . .... . . . . . ....... . . . ......... ..... ............. .. .. ..... .. . .. ..... . . . . .. . ............. . . . . . . . ...... ...... . . . . . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . . ...... . . . . . . . . ....... . ..................................................... ......... . . . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 22222222 0 22 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 00 4 0 00 0 0 00 4 444 0 0 6 0 4 00 8 0 8888 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 2222 7 888888888888 7 000000 77 0 777 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 6666 44444444444444444444444 88 6 88888 7 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 2222222 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 9 7 0000 0000 99 33333333333333333333 7 00 00 777 999 4 4444 0 7 0 0 0 2222222 7 7 7 888888888 55555 3333333333333 33 22 88888 00 3 22 77777 7 1 0 0 77 7 6666666666666 7 3 2 7 0 6 4 000000 000000 2 5 2 0 5 33 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 6 4 000000 0 6 4 0 6 2 0 8 8888888 8 00000000000000000000000000000000000000000000000000000 444444444 0 8 6 4 4 2 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-------AAA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG-T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-------AAA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG-T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTAT-----CT-ATTGATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTTC--CATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA-------CA---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GAC--------T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACA--ATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---C---G-AT-GCCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTG-CGA-A-ACTTGAAACATCATCAGCAAACAT------TAA-G-GC-TACTAAC---TCAT---TAATATCATCAG--AAACAAATATACCAC-GAT--CA--CATTTAGAATGTAGAA-ATG-TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-TGGCCA-C--A-CAGCCTTGCCTGGT-TCCAATGTTACATGGGAAAAACT----CAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-CT---------TA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCAAGACA-AGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATTC--CTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-CA-CTA-ACGTTTGCCAAATCATCTGCGTACA-------gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-A----------------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGtcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAA-------AAG-G-GCAT-----A---TCTG---GAATATCAGT-GTTTAATGAAAATACCTG-AAC--TG--C----------TAAAATAGGATAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTT-GTTG-T--G-TCCCCCTGTCTCAT-ACCTATAGTAAATTCTGAAAATTTGAACAGTTacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTAT-----CA-GTTCCTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAAT-AAACCCTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTCT--CATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGG--CA---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG-CT-------T-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTG--AAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---A---A-AC-ACCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-A-ACTAGAAACATCATCAGCAAATA-------TAA-GTGCGAC-TAAA---TCT----TCATATCATTAG--AAACAAAAATACCTC-AAT--CG--CATTTTTCATGTAGAA-AAG-TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-T-ACCGAC--A-CAGCCCTGTCTTGT-TTCAATATTACATTTAAAGAAGT----GTGTGAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTAT-----TGGAATATTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGAT-AAAACA-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C-AA--T--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATA----AAAC---G--AA---TAATTCATTTGTGGGG--AAG-TGACCATAA-GGTTGTTG-------ATAGT---G----AAGTATAG--AG-----A-A-TATTGTTTTT-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCA--AGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---A---G-TT-TCCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCG-CGC-A-ATTTGCAACATCATCAGCGAATA-------AAA-G-GCATATTATA---TCTG---GAATATCAGC-GT-TTATGAAAATACCTG-AAC--CG--CATCTTTCTTCTTAAA-AGGATAGATAACTCATTAATAACGAGAGAAAATATGGTTGTAC-TAGTTG-T--GTCCGTC-TGTCTTGT-ACCTATATTACATGTAAAATAT------AGTT---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGAC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGAT-AAATCA-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCAT------TA---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-A-T--TT--------G-CCCCGTAATAT----GT--CCAGATTTCA-T---T----T-----C--TGCGTA---A-ATAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CA-CTACA-GTTGGCAATGTCATCAGCATACA-------AAATG-AAATA-TATA---TCTACATGAATACCATT-T--G--------TACAT--GAT--TG-----TTTCCATTCAT-------CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTT-AATG-T--A-CAGCCTTGCC-TGCAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---A---GTAT-ACCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTATC-A-CTA-ACGTTTGCCAAATCATCTGCATACATCACTGCAAT-G-ACATA-TTCAGTTTCTG-----ATAT--TT-G--TAGT-------CCTCTGATATCGGCTACTTTTAATTCATCA-A---TAA---GATCATTAATAGATAATGAGAATTAAATCATGT-T-GA-G-TTTA-CACCCTTGCCGTGT-ACCTATGTTACAATTAACATTTT----TATTTA--CAATCATCAACCCTGACACATG
gi|5 : TCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCAT----GCCTGTA-AGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttAGATCATTAAT-AATAATGAGAATAAGATTGTGC-T-GA-G-TAAA-CACCCTTACatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCTT--CAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G-T--------T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACG--A-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---ATCCC-CT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTA-CAT-A-ATACGCAACAGCGTCTCCAAACA-------AAA-taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAAG---GAACAATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G-C--------TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A----CA--ACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---G---G-TT-CCCACC----------------ATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTACATTGAATTGCAAGCATTTTGTTAGCTAAAGTCCATCTTGGTTTTGTTCTGAGTAAAGAATAGTATCATATTTTGAAACAGTGACACTGTTTCTACTATTTTCTCGTCAGGTACCTAATGTTCATTTACTCTGTGATAATTCCCATTTATAACCACTAGTATTACTGATTTCTTCAGATATATCCGCATAGCGGTTTTATTTGCAAAGGTTAGATAAAAATTGTTAAACAGCATCACTACAATTTGCCAAATCATCGGAATATGGTACCGCAAAAACATCATCTACTTTGTGTATACCATTAGCACAGCCGTGTTTTAGTTCTAATTCATTAACCAGCTTTCGAATAAAAATATTAAATAAAATCGTACTTAATTGACAGCCTTGGCGATAACCAACGTTACAATTGAAAATATTAGTATAATTATCACGATCGTACTGATTTTGATAATTATACTG
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 33333333 11 1 111 11 11 33333333333 11 11 11111 11 333333333 11 111 1111 11 11111 1 2222 11 1 2222222 3333333333333 2222222 1111 222222222222 222222 11 111 11111 111 111 2222222222 1111 55555555555555555555555 11 1 11111 33333333333333333333 8888888888888888888888888888 11111 11111111 1111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 44444444444444444444 1111 1 2222222 222222222 22222 3333333333333 11 11111 22222 3333333333333 222222 222222 11 1 22 1 1 222 111 1 222222 222222 2222222 77777777777777777777777777777777777777777777777777777 222222222 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 33333333 1 11 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 66 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 22 1 1 22 8 1 11 1 777 8 8 5 8 1 22 0 8 0000 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 3333333 999 3 0000000000000 1 3 1 6 5 1 99 6666666 6 0 1 1111 6 777777777777 6 000000 22 1 111 1 66666 222 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 5555 11111111111111111111111 33 0 55555 0 44444444444444444444 4444444444444444444444444444 9999 1 66666 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 7777777 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 8 5 6666 6666 77 11111111111111111111 6 99 22 111 888 0 4444 1 5 0 1 1 1111111 5 6 1 000000000 33333 7777777777777 33 99 44444 44 3 44 22222 6 0 1 1 22 1 0000000000000 0 2 3 6 1 0 1 111111 666666 0 4 0 7 2 88 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 4 1 333333 1 0 1 1 0 3 1 3 5555555 8 88888888888888888888888888888888888888888888888888888 111111111 8 0 0 1 1 3 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ........ . .. .. . . . ... . . . . . .. .. . . . .. . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... . . . . . .. . . .... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . ....... ... . ............. . . . . . . .. ....... . . . .... . ............ . ...... .. . ... . ..... ... . .. . . ... . . . . . .......... . . .... ....................... .. . ..... . .................... ............................ .... . ..... . . . . . . . .. .. .... . . . ........ . ....... . ............................................................................................................ . . . . .... .... .. .................... . .. .. ... ... . .... . . . . . ....... . . . ......... ..... ............. .. .. ..... .. . .. ..... . . . . .. . ............. . . . . . . . ...... ...... . . . . . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . . ...... . . . . . . . . ....... . ..................................................... ......... . . . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 22222222 0 22 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 00 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 00 4 0 00 0 0 00 4 444 0 0 6 0 4 00 8 0 8888 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 2222222 555 5 5555555555555 0 7 0 7 2 0 22 7777777 7 7 0 2222 7 888888888888 7 000000 77 0 777 7 77777 555 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 6666 44444444444444444444444 88 6 88888 7 22222222222222222222 8888888888888888888888888888 3333 0 77777 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 2222222 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 3 9 7 0000 0000 99 33333333333333333333 7 00 00 777 999 4 4444 0 7 0 0 0 2222222 7 7 7 888888888 55555 3333333333333 33 22 88888 00 3 22 77777 7 1 0 0 77 7 6666666666666 7 3 2 7 0 6 4 000000 000000 2 5 2 0 5 33 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 6 4 000000 0 6 4 0 6 2 0 8 8888888 8 00000000000000000000000000000000000000000000000000000 444444444 0 8 6 4 4 2 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-------AAA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG-T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-------AAA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG-T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTAT-----CT-ATTGATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAATAT-AT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAG--CAGTC-T-TT-AATGCGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGGTTTTC--CATAC-GTA-TAATTCTT----------AGCCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATATCAGAT---GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----ACAGAATTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA-------CA---TA--TCT---ACTGAATTTAGATGTCCA-AATTTACGTTG-------AAATC---T----AAATATAC--AGGCAACA-GAC--------T-----TAAT--A-CCTTACAAT-----GCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACA--ATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---C---G-AT-GCCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTATCTG-CGA-A-ACTTGAAACATCATCAGCAAACAT------TAA-G-GC-TACTAAC---TCAT---TAATATCATCAG--AAACAAATATACCAC-GAT--CA--CATTTAGAATGTAGAA-ATG-TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-TGGCCA-C--A-CAGCCTTGCCTGGT-TCCAATGTTACATGGGAAAAACT----CAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-CT---------TA----ATAT----G-TGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCAAGACA-AGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAAA-ACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGATATTC--CTTGCAAAATTAACT-TA----------AGCCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTCCA--GTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAACTTATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-CA-CTA-ACGTTTGCCAAATCATCTGCGTACA-------gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-A----------------ACATCATTACTGTTA-AA-ATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGtcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAA-------AAG-G-GCAT-----A---TCTG---GAATATCAGT-GTTTAATGAAAATACCTG-AAC--TG--C----------TAAAATAGGATAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTT-GTTG-T--G-TCCCCCTGTCTCAT-ACCTATAGTAAATTCTGAAAATTTGAACAGTTacaa
gi|17 : ATAC-GAATTAGTT-GT----------AGCTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA--CATTGGCA--GTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CCAGAAT-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTAT-----CA-GTTCCTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAA--CATTC-AATT-AA-ACGTTGCTTA-AAAATATTAAT-AAACCCTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGGTCTCT--CATAC-GTGTTAATT-TT----------AACCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATAACAGGCA--GTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GCAAAATTTAACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGG--CA---TA--TCA---ATAGGATCAATATGACCG-AATTGTCGTTG-------AAAGT---TAA--AAATACAAGCAG-----ATG-CT-------T-----TTAT--A-CCCTGTAGT-----GAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTG--AAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---A---A-AC-ACCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTATCAGAAAA-A-ACTAGAAACATCATCAGCAAATA-------TAA-GTGCGAC-TAAA---TCT----TCATATCATTAG--AAACAAAAATACCTC-AAT--CG--CATTTTTCATGTAGAA-AAG-TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-T-ACCGAC--A-CAGCCCTGTCTTGT-TTCAATATTACATTTAAAGAAGT----GTGTGAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATAT----ATTAACA-AATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTAT-----TGGAATATTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGA--TATCC-A-CC-AA-TCTTTGCTTA-AAAACAGAGAT-AAAACA-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG-ATTAGGCATTT-GTAATAGTT-TA----------CGCCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C-AA--T--CGAGT----TATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAACAAA---TAGTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATA----AAAC---G--AA---TAATTCATTTGTGGGG--AAG-TGACCATAA-GGTTGTTG-------ATAGT---G----AAGTATAG--AG-----A-A-TATTGTTTTT-----TTTT--A-GCTTGTGCT-----ACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCA--AGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---A---G-TT-TCCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCCG-CGC-A-ATTTGCAACATCATCAGCGAATA-------AAA-G-GCATATTATA---TCTG---GAATATCAGC-GT-TTATGAAAATACCTG-AAC--CG--CATCTTTCTTCTTAAA-AGGATAGATAACTCATTAATAACGAGAGAAAATATGGTTGTAC-TAGTTG-T--GTCCGTC-TGTCTTGT-ACCTATATTACATGTAAAATAT------AGTT---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGAC--CACTCTG-TT-AC-ACGTTGTTTA-AATCTTAAGAT-AAATCA-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGA--------AT----TGTTCATT-TTGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCT--CT--T-GAAAAGGCGTGAAATGTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GCACAATT-GACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCAT------TA---T---TCA---TTGTGATCAAAATATCTATCACTTTTTTT---------AAGTTTAT----AAATAAAA--A-------------------------TTAT--G-GCCTTTTTTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-A-T--TT--------G-CCCCGTAATAT----GT--CCAGATTTCA-T---T----T-----C--TGCGTA---A-ATAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-CA-CTACA-GTTGGCAATGTCATCAGCATACA-------AAATG-AAATA-TATA---TCTACATGAATACCATT-T--G--------TACAT--GAT--TG-----TTTCCATTCAT-------CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTT-AATG-T--A-CAGCCTTGCC-TGCAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---A---GTAT-ACCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTATC-A-CTA-ACGTTTGCCAAATCATCTGCATACATCACTGCAAT-G-ACATA-TTCAGTTTCTG-----ATAT--TT-G--TAGT-------CCTCTGATATCGGCTACTTTTAATTCATCA-A---TAA---GATCATTAATAGATAATGAGAATTAAATCATGT-T-GA-G-TTTA-CACCCTTGCCGTGT-ACCTATGTTACAATTAACATTTT----TATTTA--CAATCATCAACCCTGACACATG
gi|5 : TCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCAT----GCCTGTA-AGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttAGATCATTAAT-AATAATGAGAATAAGATTGTGC-T-GA-G-TAAA-CACCCTTACatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCTT--CAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACAT----ACCTGTA-AGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAAT---TGGAAAAATATAA--AATAT--A-G-T--------T-----TTAT--ATGTTTGAGAT-----GCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACG--A-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---ATCCC-CT-CCCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGTCTA-CAT-A-ATACGCAACAGCGTCTCCAAACA-------AAA-taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAAG---GAACAATTCA--TTG---GTGGGA--AAG-TGATCATA-CGGTTGTTG-------GTAGT---G----AAGTATTG--AG-------G-C--------TATCGATTGTTGA-GCTTGTGCT-----GAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A----CA--ACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---G---G-TT-CCCACC----------------ATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaata
blockSeqs : . A A G . A A C . G G G ATAAA T A G TA TC T AGC C TT T TT TGG C G GCA T A TCC AGTGAA TTAAA A G CAAGACA G TC GC T C TAT A T CA AT T G C GA A T TA C GACGTAGA . A T TA A T A C G CG AT A CGAT TT CCTATGAAT TT T T TT T A CT C AA A . T T A TT . CCCT AT TG G A AT T TACAT C C T AT A CGCA T T GA AG T T G ATTAGG GCA T TTGAGAAGACGT T A C A G G AG TCTGTTA T G GAA . AAGGCGTGAAAT A ATTTGT TG A TCC T CTTAA CTT A AC A T TGA T T A T G TATAAAA A A TTTT CGAATAATTCATTTG TC A TCACT GTAATGTAAAATTGGAA AGAATATTGTTTTT TGA G GAACG A G C G T T A GT CT CTTG T G A AAGCAGT A GAAAGGA T GTTACTTTGATTTGAGATCCACGAAAGTGCCATCATTCATTTTGTCTTATCCCCTCCCCCCCTTTTTCTTATTTCTA A C T C ATCT AATA AA ATCCCTTTATTTCA T TC TA TGA TAA CAGA T C C T T TCACTGC T T A ATTCAGTT ACATG TGTTTAATGAAA CT AT GCTAC TC G AA TAGGA A G T AG C TAGTTGTGT C T A T A TTGAAC AGTCTG G A G GT T T T G G A TT T . T C T TTT G AAA TT C C T T A AC TT TGTAAT A A A TGAA T A A A C A ATTTCT T AAACCAATTATATAGTTTTTGAATATTCATATATT CATTACTGT . T T T GAGT CA AG AG AATTT . C AC A A AA TTGAA . CC TTT . AT . A A A G TA . A A T . . G GC ACACG T T G A AT G A T A
blockSeqs : . A GG T C . A A C AAGCA AGAGA A . TGG T CC A T . TTG G T . TA C T T TC . C AG T GAGTTAAA . G C TG A C A A A AT A . TGGT TC CAAC AT A A AG . T . T TG . . T . A TT . ACA T . C A AG A TATTA . T A AC C . T A . AA A T G TATTC AC T TA A A C . A T . A . A CA . GCAATTTCCA . CA C G . T . TTA . GT . A AA A A A C C CAGATAA A A ATTT GGAACAATTCATTGG TC A AATT AAAGTTAA GCAGATGCTT AT C . A T G T C G . . AA TTTT A G T GCAGA T TACTGGC C GTGATATTTGCCCCGTAATATGTCCAGATTTCATTTCTGCGTAAATAGCTGCC T T A . TT AAT . AACTGACGT . TC AC GTG T CCG A . C T G . . . G ATTATA GG TAGAAACAAAA G . CAT TC C GA AGGA C A A TC A TTGTTGTG C T . A A TG ACAA C G G . . . . . . . A AT AC C . T A . AT GT TAAA T C T TGAA T A G A A A AATAAC A TTCAGACTAATTATAAAGTCGTGTTTTCA ATTAA . A A T TAAC CG . G GAAG . .
blockSeqs : T A . . . A TATG AG . . CA A AT T . . . . . . TA A T C AC . C TT T AAGTAAGG . T G CA A T T A G TT T . TCTT G TAT TT A G AT . T . T G . . T . A GA . TCA T . C T CA C . . . G . T . A A . TT A T . TCTCT AC T GT A G C . G A . T . A AG . ATAACAGGCA . TG T A . T . TA . AG . A TA G C T T C GTGAGGG C T A CCGGGCATATCAA . . TAAG AAGTTTAT AGGCTATCGA A T . G A C A C T . . TT TCTT T A T TTCGT A GCAAGGA T ATGTGATTACAACAAAATTGTCATTGCTCACTGTTTCTTACTAGGTTCCCACC C C G . AC AGT . GGTATTGTT . CT AT ATG T CTA G . . A A . . . A CTAAA GG CGTTTATGAAA C . CAT CC T AA AAG A G A TG T TACCGACA T T . T T TT . . . . . A C . T . . GA TG TAAT A T T ACTG A T T C G G TAT T ACACCATTTTGTTAAACGAATAGATA GCCTG . T T A TAAA . . .
blockSeqs : T T T . G TT C . . G C TT T C T . . GG . . CTA G GAC AG G A CA . G . C A . . . . T AA . . . . A T AT AA T A . . TT A TT T G A . T T . C . C CA . CATTGGCA . AG T T . C . TG . GT . G G C A T C . TGACA . A . TTATTCAT . . TACG ATAGTG AATATAGTT A A . T T G G C G . . AC ACAA T A T TACA A ACCTGAG C ATAAGTTCGTTGTTGAAAAACCCATTTTTCAGTTGGTTTTAAAACACCACC A T G . AC GAT . TGTTCTGTT . GA AT CGA A CA T . . A A . . . A ATATA T TGTAGT G . C TA T TC A C A A AA C TTAATGTA T G . A T . . . . . . GT TG . A T T . A T T C C . AA . TACCCACTCGCTAAATCTATTAA ACCTG . T T G T
blockSeqs : . T TA C . T . . T . . . T CT . TCGAGT . GA . T . . . . . . . T TACG GTAGTG A G C . A T G T . . . . AA A G . . TAAA . A . ATGTGATTGCCAAGAAATTGCCATTTCTCATTGTTCCTTAAGTTTCCACC T T A . A T . GTTAATGTT . . GC TGA T CA T . . A T . . . A A G TTG . . . . . T . . T T AA C TGAGTTTA T . . T
blockSeqs : T . . . G A . AATTAAT TAG A CA A . . T T . . T T AG T TGAGTAAA .
blockSeqs : . T A .
blockSeqCons : NC ** TN G** TN*********** GCATCGGCG*** TN* GATAATTCATG************ ** ANAGTTAG************ AATATCGTT******************* CA** ******* ATTATA*** AGGA* ACCTG****
originalCons : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTTCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTC-G-TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATT-TT----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAATAACGGGCA--GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTTGATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAC---G--CA---TA--TCG---GTGGGATCAAGATGACCATAACGGTCGTTG-------AAAGT---T----AAATATAA--AG-----A-G-C--------T-----TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCCG-CNA-A-ATTTGCAACATCATCNGCGNACA-------AAA-G-GCATA-TANA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAA-AGG-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG-T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACAT----ACCGGTA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
finalCons : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTAT-----CG-ANTNCTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTNCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAA--CACTCG--TT-AA-ACGTTGCTTA-AAAATATNGAT-AAATCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGGTNTTC--CATAC-GTATTAATTTN-----------AGCCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAGCATCGGCG---GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GCAAAATTN-ATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAAGATAATTCATG------------TGGGA--AAGATGACCATAACGGTCGTTGANAGTTAG------------AAATATAAAATATCGTT-------------------TTAT--A-GCTTGTGNT-----GCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-AT-NCCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTATCA--CNA-A-ATTTGCAACATCATCNGCGNACA-------AAA-G-GCATATTATA---TCTG---GAATATCATC-G--NAACGAAAATACCTC-GAT--CG--CATTTTTCATNTANAAAGGA-TAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNCG-T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACATACCTG----TA-AATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTACATTGAATTGCAAGCATTTTGTTAGCTAAAGTCCATCTTGGTTTTGTTCTGAGTAAAGAATAGTATCATATTTTGAAACAGTGACACTGTTTCTACTATTTTCTCGTCAGGTACCTAATGTTCATTTACTCTGTGATAATTCCCATTTATAACCACTAGTATTACTGATTTCTTCAGATATATCCGCATAGCGGTTTTATTTGCAAAGGTTAGATAAAAATTGTTAAACAGCATCACTACAATTTGCCAAATCATCGGAATATGGTACCGCAAAAACATCATCTACTTTGTGTATACCATTAGCACAGCCGTGTTTTAGTTCTAATTCATTAACCAGCTTTCGAATAAAAATATTAAATAAAATCGTACTTAATTGACAGCCTTGGCGATAACCAACGTTACAATTGAAAATATTAGTATAATTATCACGATCGTACTGATTTTGATAATTATACTG
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT
Alignments
lowQualScore : 11 1 1 1 11 222222 1 1 111 111 111 22222222 1111111 1 333333333333 11 1 111 11 111 33333333333 11 11 11111 11 333333333 11 111 111 11111 11 11111 1 2222 11 1 1111 1111111111 222222222 2222222 111111 5555555555555555555 222222 11 111 11111 11111 111 2222222222 55555555555555555555555555555555555555 1 11111 2222222 111 222222222222222222 111111 11111111 1111111 5555555555555555555555555555555555555555555 6666666666666666666666666666666666666666666666666666 1111 44444444444444444444 11 1 222222222 1111111 22222 33333333333333 22222 11111 22222 333333333333333 222222 222222 11 1 22 1 1 222 111 1 222222 222222 2222222 7777777777777777777777777777777777777777777777777777777 1111 11 22 44444444 1 1 22222222 222 222 1 11 11 11 222 2222 11 22222
lowQualScore : 88 1 5 1 5 1 1 5 88 1 1 1 666666 5 1 1 22 22 1 333 1 22 2 88 222 0 1 1 777 9 0 3 555 66666666 9999999 3 0 333333333333 11 0 3 0 222 0 4 0 3 0 33 22 1 1 1 000 8 1 22 1 00000000000 11 1 1 66 6 1 1 5 1 11 44 8 33333 11 000000000 22 1 1 22 8 1 11 1 777 555 5 8 1 22 0 88888 88 11 1 1 11 0 1 44444 0 0 6 1 0 55 1 1111 1 0 1 0 0 33 0 22 1 1 3 2222 1111111111 6 1 666666666 1 3 1 6 5 1 99 6666666 6 0 1 000000 5555555555555555555 6 000000 22 1 111 1 66666 6 33333 6 99 6 1 000 1 1 1 1 5 0000000000 5 1 99999999999999999999999999999999999999 0 55555 0 1111111 1 555 99 888888888888888888 444444 2 1 1 1 1 1 3 3 6 99 22 7777 1 3 3 77777777 3 7777777 3 5555555555555555555555555555555555555555555 5 0000000000000000000000000000000000000000000000000000 1 2 8 5 6666 6666 77 11111111111111111111 6 99 22 111 888 0 5 99 1 5 0 1 1 000000000 5 6 1 7777777 33333 77777777777777 00000 44444 44 3 44 44444 44 22 1 22 1 000000000000000 0 2 3 6 1 0 1 111111 666666 0 4 0 7 2 88 7 3 00 1 2 1 22 1 5 1 6 3 333 1 666 44 3 8 6 6 8 22 22 444444 1 4 1 333333 1 0 1 1 0 3 1 3 5555555 8 6666666666666666666666666666666666666666666666666666666 8 7777 0 1 1 3 9999 99 33 0 55 55555555 3 3 22 1 1 33 44444444 000 22 111 5 88 88 1 1 1 1 22 88 1 1 1 000 3333 1 77 66666 2 1 2 1 22 1 1 1 1
lowQualScore : .. . . . . . . . .. . . . ...... . . . .. .. . ... . .. . .. ... . . . ... . . . ... ........ ....... . . ............ .. . . . ... . . . . . .. .. . . . ... . . .. . ........... .. . . .. . . . . . .. .. . ..... .. ......... .. . . .. . . .. . ... ... . . . .. . ..... .. .. . . .. . . ..... . . . . . .. . .... . . . . . .. . .. . . . .... .......... . . ......... . . . . . . .. ....... . . . ...... ................... . ...... .. . ... . ..... . ..... . .. . . ... . . . . . .......... . . ...................................... . ..... . ....... . ... .. .................. ...... . . . . . . . . . .. .. .... . . . ........ . ....... . ........................................... . .................................................... . . . . .... .... .. .................... . .. .. ... ... . . .. . . . . . ......... . . . ....... ..... .............. ..... ..... .. . .. ..... .. .. . .. . ............... . . . . . . . ...... ...... . . . . . .. . . .. . . . .. . . . . . ... . ... .. . . . . . .. .. ...... . . . ...... . . . . . . . . ....... . ....................................................... . .... . . . . .... .. .. . .. ........ . . .. . . .. ........ ... .. ... . .. .. . . . . .. .. . . . ... .... . .. ..... . . . . .. . . . .
lowQualScore : 00 0 5 0 0 0 0 0 55 0 0 0 000000 5 0 0 00 00 0 000 0 00 0 33 333 8 2 0 555 8 8 2 000 55555555 5555555 2 0 888888888888 22 2 2 0 222 8 2 2 2 2 88 55 2 0 4 000 0 4 44 4 66666666666 00 0 4 00 0 4 4 6 4 66 00 0 88888 66 666666666 00 4 0 00 0 0 00 4 444 222 6 0 4 00 8 88888 88 00 0 4 66 6 2 55555 0 2 5 2 8 22 2 2222 2 8 0 2 2 88 8 44 4 4 2 8888 2222222222 7 0 777777777 0 7 0 7 2 0 22 7777777 7 7 0 555555 0000000000000000000 7 000000 77 0 777 7 77777 7 33333 7 33 7 0 222 0 0 0 4 0 8888888888 6 0 44444444444444444444444444444444444444 6 88888 7 7777777 0 555 22 888888888888888888 000000 2 0 0 0 0 0 7 0 7 22 00 8888 0 7 5 33333333 5 2222222 7 0000000000000000000000000000000000000000000 7 6666666666666666666666666666666666666666666666666666 0 3 9 7 0000 0000 99 33333333333333333333 7 00 00 777 999 4 7 33 0 7 0 0 0 444444444 7 7 7 0000000 55555 33333333333333 55555 88888 00 3 22 77777 22 44 0 77 7 666666666666666 7 3 2 7 0 6 4 000000 000000 2 5 2 0 5 33 3 3 77 0 5 0 00 0 5 0 7 3 333 0 000 22 2 0 0 0 0 88 00 444444 4 6 4 000000 0 6 4 0 6 2 0 8 8888888 8 2222222222222222222222222222222222222222222222222222222 2 0000 6 4 4 2 6666 00 88 2 00 55555555 3 3 00 0 0 55 55555555 555 00 555 5 55 00 0 0 0 0 00 55 0 0 0 000 5555 0 55 00000 5 0 5 0 00 0 0 0 0
consensus : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTATCG-ANTN-----CTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTNCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAAC--ACTC-G-TTAA-A-CGTTGCTTA-AAAATATNGATAAA-TCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGG--TNTTC--CATAC-GTATTAATT-TNAG---------CCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAGCA---TC-GGCG------GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GC-AAAA-TTN-ATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATAATTTAAA--GG--ATAATTCA--TT-GTGGGA--A---AGATGACCATAACGGTCGTTG-------AAAGTT-AGAAA--TAT--AG--A-ATATNG---TTTTN-TA-GCTTGCGNTGCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-ATN-CCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTAT-C--GCNA-A-ATTTGCAACATCATCNGCGNACA-------A-AA-G-GCATATT--ATATCTG---GAATATCATC-G-N--AACGAAAATACCTC-G--ATCG--CATTTTTCATNTANAA-AGGATAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNC-G--T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACATACCTGT----AAATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
Reference ( family-1826 ) : NATATCTAGCAATACTGACAANGCTTCATCTNATCTTTNAAGNTGACATATTANGNAATANATGTAAATTATGNGANCTGTTTCTTAACCANNTANNTTTGAAANAAGTNNNTCTNANNTGTTCATACTNATGGACATTCGAAGAAGAAATGATACTCATNTT---CAATTACATATATATTAGT--TTTAGT--A-GTAAA--AGA--CAGAATCTTAAAT-TTCTATCG-ANTN-----CTAA-ATGTCTTCCCTTCTCTATCATTAAAT-TATGGCTCGAACGACGGAAATTCGAC--ATAGCTTTTTTATACTTNCAT-GGCATNTCCA-GA-GT-A-GGTAT--TNCTCAACGTCGAGTAGCGACTTAAAGTNTTTATAATG-TAATA-CTTTCGGT-GAATNATTC-----AACATCTTCGTGCCANTTTTGNNA-ATAAC--ACTC-G-TTAA-A-CGTTGCTTA-AAAATATNGATAAA-TCA-ACG-TCA--TCNCCAACGTCTTGGGANATCCAAACGTATCCAAATCCGTACGTAAAAAGT-AGTTCTTTAACATANCTT----GCCCAAGTTTTTCTACCNGCTTCATCTAAT--CGTTTTAGCATANTATAACATTGTTTTGGATATCTGTGG--TNTTC--CATAC-GTATTAATT-TNAG---------CCAATATTTNATACAGTTTGTCATA-TAAGTNA--TACA------NAATGGCA-GTCTTCCGCACTCACCNAGCG--C-AAAGCA---TC-GGCG------GTATTT-TG---CG-ACAAT-TTNC---AATATTGTTT-----GC-AAAA-TTN-ATT-TGTACGTTTTCAATTT-TNTC-GACGTANTTATAACCCNANATTTCCGATCCATAA-C-G-ANA-ATAGGCTTGACCATAGAATCAAATANTTTAAA--G---ATAATTCA--T--GTGGGA--A---AGATGACCATAACGGTCGTTG-------ANAGTT-AGAAA--TAT--AA--A-ATATCG---TTTTA-TA-GCTTGTGNTGCNAGCNTCTNTTGNGCTTTC-GA--CCATANNAGNTTTGGNGTGAAATAN-A-CA--CCCATATATTTATAAAATGGGACAACCTTT---A-T-AGT--TT--------ATCCNCG--ANAA----GT--CCATTTTTCA-TT-GT----T-----C--TA---A---G-ATN-CCGCC----------------ATTTCTAAANACAACAATTTCGGTTTT-ATA--NAAAT-TAATT--TTCATACCG--A--C----TG--TT---AC-AAAATTNTTCAATANNATTAATCTGTNGCTG--NAGGTCTATAACAGTAT-C--ACNA-A-ATTTGCAACATCATCNGCGNACA-------A-AA-G-GCATATT--ATATCTG---GAATATCATC-G-N--AACGAAAATACCTC-G--ATCG--CATTTTTCATNTANAA-AGGATAACTAGATCATTAATAAANAGNGAAAATANGATCGTGC-T-GNC-G--T--A-CAGCCTTGCCTTGT-ACCNATATTACATTTAAAAAATT----CAGTTAGTCCGTCATNAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CT-TAAAATTATTAAGAANTTTCCATCGACGCCGTTTCTNGCAANNGCNTCCCATAGTTTTTNGTGCTGGATGCTGTCAAATGCTTTAGCAAAA-TCA---ANAAATATACAATAAAATCTNCCCATCTT-TTTTGCT-AGA-TATTTTTGTGCCATNGCCATTA-AATGTAAATAAATTATCCGTTGT--TGAATACCCTTTNCTAAATCCTGACTGCGNTTCATCAAT-AC-ATTATTATTNTCGCACCA---------TTTC--GTT-AA--CTATTA-A----------TA----ACATACCTGT----AAATATTTTACTCAAAGTATCGATTAGCGAAATGCCGCGGTAA--TTATTTGGGTC-GATTTA---GA---CC-TT-TTTATGTAACGGNNTNANAATGCTTNCGCTCCAATTTTGAACAGGAAACGAGCCTNNATTTTCAAATATTTCATTGAATAGAGTTGATTTAAAAANGGCAANACGNCATNAANNGTATGCTTATACATTTCTANGCACACNCCGTCNGGGCCTCCAGAACGGTNAGCGATTTACACGTAAATGACGTATACTNTCGATNATTTCTNNATCANANATNGGTNCGTTTA
gi|1 : ATATCTAGCAATACTGACAATGCTTT-TCTCATCTTTCAAGCTAA-ATATTATGTAATACATGT---TTA-GCGATCTATTTCTTAACCAATTAGATTTGAAAAAAGTTTGTCTAAAATGTTCATACTCATT-ACATTCAAAGAAGAAGTGAAACTCATCTT---CGACTACAGAAATATTATT--TTTCAT--ACATATA--GGA--CAGAATCTTAAAT-TTTTATCT-ATTG-----ATAA-ATGTCTTCCCTTCTCGATCATTAAAG-TATGGGTCGAACAACGAAAATTTGAA--ACGTTTTTCTTAAAAT-ATAT-GATAAATCAATGT-CT-A-AGTATGATTCTGAATACAGA-T-GAGATTTAAAATGTTTATAATG-TAGAG-ATTTAGGA-GAATCATTT-----AG-ACCTGCGATCCATCTTTGTAA-ATAGC--AGTC-T-TTAATG-CGTGTTTTA-AATAAATGAATAAAATTA-ATG-TCA--TTTCCAACATCTTGGGCAAGCCAAGCATATCCAAATCCATATGTAAAAAGT-AATTCTTTAATATGACTA----GCCCAAGTTCTTCTGCCTGCTTCATCTAAT--TGTTTTAGCATTTTATAACATTGTTTAGGGTATCTATGG--TTTTC--CATAC-GTAT-AATTCTTAG---------CCAAAATTTTACACAGTTGGGAATA-TAAGTAA--TACA------TAACGGTA-ATCTTCCGCATTCTCCTAGCG--CTAGAATA---TC-AGAT------GTATTT-TG---TG-ATAAA-TTAC---AATACTGTTT-----AC-AGAA-TTTGATT-TGCACTTTTTCAATTT-TTTC-AACATACTTGTATCCCCAGATTTCAGAGCCATAA-C-A-AAGTATAGGTTTGACCATAGCATCAAATACTTTAAA--C---ATA-TCTA--C---TG--A--ATTTAGATGTCCA-AATTTACGTTG-------AAATCT-AAATA--TAC--AGGCA-ACA--G---ACTTAATA-CCTTACAATGCTAACATTTCTTGCGTTTTT-GA--CCATAGCAATTTTGGCGTGAAATAA-A-CA--CCTAAATATTTATAAAATTTGACAACATCT---A-T-AGT--TT--------CTCCACA--ATAA----GT--CCACTTTTC---T-GTAAGCT-----T--GA---C---G-ATG-CCTCC----------------ATTTCTAAAAACAACAATTTTTGATTT-ATC--GAGAT-TAATT--TTCATATCA--A--C----AG--ATGC-AC-AGAATTGTTCAATACAATTAATTTGTCTTTG--AAGATGTACAACAGTAT-CT-GCGA-A-ACTTGAAACATCATCAGCAAACA-------TTAA-G-GC-TACT--AACTCAT---TAATATCATCAG-A--AACAAATATACCAC-G--ATCA--CATTTAGAATGTAGAA-ATG-TAACTAAATCATTTATAAACATAGAAAAGATTATGGGGC-T-GGCCA--C--A-CAGCCTTGCCTGGT-TCCAATGTTACATGGGAAAAACT----CAGTTAATCCATTATTAACCTTAACACATGATTTTAA--TTTGCTATACATAGA-CTGTAAAATTATTAAGAACTTTCCATCGACACCTTTTCTTGTAAAAGCATTCCATAGTTTTTGGTGTTGAATACTATCAAATGCTTTAGCAAAA-TCA---ACAAATATACAATAAAAACGTCCTTTTCT-CTTAGAA-AGA-TACTTTTGTCCTAAAGCCATTA-AA-GTAAATATGTTATCTATAGT--GGTATACTTTTTCCTAAATCCTGCCTGTGACTCATCAATGAC-ATCAAAAGTATCGCACCA---------TTTA--GTT-AAT-CTATTA-C----------TT----A-ATA--TGTGACAGAATATTTTACATAGGGAATCGATAAGTGAAATGCCTCGATAG--TTATTTGGGTC--ATTTACTGGA---CCTTT-TTTATGTAATGATGTTATAATGCTTTCGCTCCAATTTT---CAGGAAACGAACCTGAA---TCAAATATTTCATTAA--AAAGTTGATTTAAAAACGGCAATATGTCATTAAGTGTATACTTATACATTTCTATACATACTCCGTCAGGGCCTCCAGAACGGTTA--GATTT-----TAAATGACGTATACTATCGATTATTTCTTGATTATATATAGGTTCGTTTA
gi|10 : agTTCGAAAAAGAGATGCCCCTAATGTT---CAGTTACACATACATTAGC--TTTA-T--G-ACAAATTAAA--CAAAATCGTAAAA-TTCCATCA-AGACAAGATCTAA-AGGTCTCCCTTTTTCTATAATTAAAT-TATGAC-----------AAATTCGAC--AATGTTTTTTTAGACTTGAAT-GATATATCCA-GACGT-A-GATAT--GACTCAATATTAAGCAATGACTTA---TCGTTATACTG-ATATA-CTTTCGAT-GTA-GGTTCCTATGAATATCTTCTTGCCATTTCTATTA-AAAACTCACT--G-TTAA-AACAT--CTTATGGAATATTG-----------CA-TCA--TCGCCAACATCATGGGATATCCACACACATCCAA
gi|12 : gggagACATATCAT----GTCCATGGTTTTCTACATGTTTCTTTTAAT--CTCTTTAAAATAGCATAGATTTGTTTTGGATGCGTGTGA--TATTC--CTTGCAAAATTAACT-TAAG---------CCAATATTCTATACAATTTTTCATA-TTA-TGAAGTACATCTGTTAAGTGGCA-GCCTTCCACAC-CATCGAG-GAAC-AAAGCAATTTC---CA------GTGTTT-AG---CA-ATAA--AGAC---AGTATTGCTT-----GCAAAAA-CTT-ATT-TGCACACTTTCTATTT-
gi|13 : tATCTGTGACTG--TAAGCCTATAACAGTGT-C--ACTA-ACGTTTGCCAAATCATCTGCGTACA-------gttttcaccattacataaaatagataatacatag
gi|14 : ataatacaagtagtacgcagtattcagttcagacataagatatctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCATCTT-TTTTGCTTAGA-TATTTCTGTACCATTGC--TTGTAATGTAAATAAATTATAAATAGT--TGAATACCCATTTCTAAAACCAGACTGAGCTTGATCATT-TCTATTTTTATTTTC-TACCC---------ACTC--GCT-AAATCTATTA-AA---------CA----TCATTACTGT----TAAAATTTTACTTAAAGTGTCTATGAGTGAAATGCCACGGAAA--TTGTTTGGATC--ATTTA---AATTTCC-TTCTTTATGAAACGGtcactgcaacgacatcttcagtttctgatatttgtattccgcagtgctgataatagctcctttcagat
gi|16 : -ATTTGCAACATCGTCTGGGGAAA-------A-AG-G-GCATAT-------CTG---GAATATCAGT-G-TTTAATGAAAATACCTG-A--ACTG--C----------TAAAATAGGATAAATAACTCATTAACAAAGAGTAAAAATAAGGTCGTACTT-GTT-G--T--G-TCCCCCTGTCTCAT-ACCTATAGTAAATTCTGAAAATTTGAACAGTTacaa
gi|17 : ATAC-GAATTAGTT-GTAG---------CTAGTATTTAATGCAATTTGTCAT--TAAGTTA--TACA-------AATGGCATGTCTATCACGTTCACCAAGCA--C-AAA-CA---TT-GGCA------GTTTTT-TG---TG-ACAATGCTGC----ATAGTGTTA-----CC-AGAA-T-----------CGTTCTCAATTC-TTTCTGA-GTATTCATAACCCTAACTTtgacatgg
gi|2 : ATATTTAGCAAT--TGACAAAATTTCATCTGAT-TTTAAAGATGACATA--AGGGAATAGA-ATAAATTATGAGAGCTGTTTCTTAACCATATATCTTTGAAATAAGTAGCTCTCATTTTTTTATAC-AATGGACATTCGAAGAAAAAATGATATTCATCTT---CAATAACATATGTATTTGTCCTTAAGC--A-GTAAA--AG---CAGTATCTTAAAT-GCCTATCA-GTTC-----CTAT-ATGTCTTCCCTTCTCTATCATTAGAT-CATGGCTATAGCAACGGAAATTAGAC--ATAGCTCTTCTATATTTTCAT-GGCAAGTCTG-GA-GTTA-AATAA--TGCTCAACGTTGAGTAGCGACTTACAGTATTTATAATG-TAATG-CTTTTGGT-GAA-GATTC-----AACATCATCATGCTTATTTTAAGA-ATAAC--ATTC-AATTAA-A-CGTTGCTTA-AAAATATTAATAAA-CCCTACA-TCT--TTCCTTACGTCATGGGAGATCCACACGTACCCAAATTTG------AAAAGT-ATTTCTTTTATACACCCT----GCCCAAGTTTTTCTACCAGATTCATGTATA--CGTTTTAGCATAACATAACAATGTTTTGGATACCAGTGG--TCTCT--CATAC-GTGTTAATT-TTAA---------CCAATATTTAATACAGTTTGTCATA-TAAATAG--TACA------AAGTGGTA-CTCTTCCACATTCACCAAGAG--C-AAAATA---ACAGGCA------GTATTT-TG---AG-ACAAC-TTAC---AATATTGTTT-----GC-AAAATTTA-ACT-TGTACAGATTCTATTT-TATC-AACATAATTATAACCCAAAATTTCTGATGCATAG-T-ATAAA-ATAGGCTTAACCATTGAGTCAAACATTTTAAACCGGGCATA--TCA-----ATAGGATCA---ATATGACCG-AATTGTCGTTG-------AAAGTT-AAAAA--TAC--AA--GCAGATGC---TTTTA-TA-CCCTGTAGTGAAAGTGTCTCTTGGGTTTTG-GA--CCATACTAGCTTGGGTGTGAAAAAT-A-CA--TCTAAAT-TTTATAGAAAGGAACAACTTCG---A-TAAGT--TC--------GTTGTTG--AAAA----AC--CCATTTTTCAGTTGGT----T-----T--TA---A---A-ACA-CCACC----------------ATTTCTGAAAACAACAACTTTTGTTTT-ACT--TAAAT-TGATA--TTCATATTA--A--C----TGACGT---GC-AATATTCTTCAATATAGTTAATCTGGTGTTG--TAGGTTTATAACAGTAT-CAGAAAA-A-ACTAGAAACATCATCAGCAAATA-------T-AA-GTGCG-ACT--AAATCT----TCATATCATTAG-A--AACAAAAATACCTC-A--ATCG--CATTTTTCATGTAGAA-AAG-TAACAAGATTGTTGATGAAAAGAGAAAATATCATAGGGC-T-ACC-GA-C--A-CAGCCCTGTCTTGT-TTCAATATTACATTTAAAGAAGT----GTGTGAGTCTGTCATGAACTTTAACACAT-AGTTTAAGTTTTGC-ACACATAGATTT-TATAATGGTTAAAAAGTTTCCATCAATGTTGTTTCTAGCAATTGCTTCCCAT-GTTTTTTATACTGGATGCTGTCAAAAACTTTAGCAAAATTTATTTAGAAAT----AATAAAATCTTTCCGTTTTCTTTTGAT-AAA-TATTTCTGAATCAGTACCATTA-AA-GTAAATATATTATCCGTTGT--TGAATAGCCCTTTCTGAAACCGGCCTGAGATTCATCAATAAC-ATTATTGTTATCACACCA---------TTTT--GTTAAA--CGAATAGA----------TA----ATATATTAAC----AAATATTTTACACAATGAATCTATTAACGAGATACCGCGGTAA--TTATTTGGGTCAGATTTG---GAAG-CC-TT-TTTATGTATCGGACTAAAAATGCTTAAATTCCA---TTGAACAGGAA---AGTCTCCATTTTCAAATA-TTCATTGAATAGAGT--ATTTAAAAAAGGTAAAACAACATGAATAGTATGTT--TACATTTCTAAGCACACACCATCTGG---TCCA----GGTGAGCGATTTACACGTAAATGATTTATACTTTGAATAATTTCTATATCAGAAATTGGTACATTTA
gi|3 : aTGTT-ATATTTA-GGACACTCAAAGAAAACATGATATTCACATTGCACAAT-AGATATAT-TCAGA--TT-AGTGAA-GTAAA--AGAGACAAAACTTT---TGTTCTATTGGAATA-----TTAGCGTGTCGTCAAGTTTCTA-CATGAAGTCTATGACTTGAACGACGGAAA--CGACCAATAGCAATTTTATACATACGC-GGCATTTCTA-----------TAT--CTCTCTGGATCAAGTAATGTCTTGAAATTTTTATAATGATAACA-TCTAC--TAGAATTATTT------ATAT-TTCATGCAAGTTTTGATATTTGAT--ATCC-A-CCAA-T-CTTTGCTTA-AAAACAGAGATAAA-ACA-ACG--CATGTCCCCAACATCTTGGGCAATCCAAATATATCTAAAACCATACATAAATACTCAGTT-TTTAACATg
gi|3 : gTTTTAACATTTTATAACAATTCTTTGGATATCT-TAG---ATTAGGCATTT-GTAATAGTT-TACG---------CCAATATTTTATAGAGTTTGTAAAA-TATGTTA--TACA------TAATGGCT-GTCGTCCGCACTCATCCAGCA--C-AA-------TC-GA-G------TTATTTATG---GA-ATTAT-TTTCTCCAATAT-GTTTCTTAAAC-AAA---TA-GTT-TGTAC--TCTCAATAG-TATC-TACATAGCTGTGACCCCATATTTCCGACCCATAA-CAG-ATA-ATAGACTTGACCATAGAATCAAATAA---AAC--GA--ATAATTCATTT--GTGGGG--A---AG-TGACCATAA-GGTTGTTG-------ATAGT---GAAG--TATAGAG--A-ATATTGTTTTTTTT-TA-GCTTGTGCTACAAACTTCTGTTGTGCTGCC-AA--CCATGAAAGA---GGAGGGGTATAA-AGCAGTCCTATATATTTGTATACTGGCGTAACCTTT---A-T-G----TG--------ATTGCCA--AGAA----ATTGCCATTTCTCA-TT-GT----T-----CCTTA---A---G-TTT-CCACC----------------ATTTCTAAATACAATAATTTCAGTTTT-ATA--CAAGT-TAACT--TTCATACCGGTA--T----TG--TT---AA-AAAATTCATCTACAACATTAAGTTGATGTTG--AAGTTTGATAAATGTTTCC--GCGC-A-ATTTGCAACATCATCAGCGAATA-------A-AA-G-GCATATT--ATATCTG---GAATATCAGC-GTT--TATGAAAATACCTG-A--ACCG--CATCTTTCTTCTTAAA-AGGATAGATAACTCATTAATAACGAGAGAAAATATGGTTGTAC-TAGTT-G--T--GTCCGTC-TGTCTTGT-ACCTATATTACATGTAAAATAT------AGTT---------------TT-ACGCATGATTTAAG--GTTGTTATACATTGT-CT---AAGGTATTAAtttataacaattctttggatatcttagattaggcatttgtaatagtttacgccaatattttatagagtttgtaaaatatgttatacataatggctgtcgtccgcactcatccagcacaatcgagttatttatggaattattttctccaatatgtttcttaaacaaatagtttgtactctcaatagtatctacatagctgtgaccccatatttccgacccataacagataatagacttgaccatagaatcaaataaaacgaataattcatttgtggggaagtgaccataaggttgttgatagtgaagtatagagaatattgtttttttttagcttgtgctacaaacttctgttgtgctgccaaccatgaaagaggaggggtataaagcagtcctatatatttgtatactggcgtaacctttatgtgattgccaagaaattgccatttctcattgttccttaagtttccaccatttctaaatacaataatttcagttttatacaagttaactttcataccggtattgttaaaaaattcatctacaacattaagttgatgttgaagtttgataaatgtttccgcgcaatttgcaacatcatcagcgaataaaaggcatattatatctggaatatcagcgtttatgaaaatacctgaaccgcatctttcttcttaaaaggatagataactcattaataacgagagaaaatatggttgtactagttgtgtccgtctgtcttgtacctatattacatgtaaaatatagttttacgcatgatttaaggttgttatacattgtctaaggtattaa
gi|4 : gtgttatatttaggacactcaaagaaaacatgatattcacattgcacaatagatatattcagattagtgaagtaaaagagacaaaacttttgttctattggaatattagcgtgtcgtcaagtttctacatgaagtctatgacttgaacgacggaaacgaccaatagcaattttatacatacgcggcatttctatatctctctggatcaagtaatgtcttgaaatttttataatgataacatctactagaattatttatatttcatgcaagttttgatatttgatatccaccaatctttgcttaaaaacagagataaaacaacgcatgtccccaacatcttgggcaatccaaatatatctaaaaccatacataaatactcagtTTTCATATTTT-ATAGGGATTTTCA-AA-GT-AAGGTAT--TGCTCAACGTTTAGTTGCGTTTTAAAGTGGTTATAATG--AATAACTTTTCTT-GATTCATG------GACATCAGCGTGCCAATTTTGCAG-AGACC--ACTCTG-TTAC-A-CGTTGTTTA-AATCTTAAGATAAA-TCA-ATGATCA--TCACCAATGTCTTGTGATATCCAAGCGAAACCAAACCCGTATTAAAAAAGT-AGTGTTTTGAC----CTTCGCAGCCCAAGTTACTCTCCCAGCTTCATCTAATGACGT---AGCATAATATATCATTGCTTAGGGTATCT-TGAATTGTTC----------ATT---T-TGAGAAGACGTAACCAGTACTTCACACA-TTTATTGTAATAATTTA--TAGA------CAATGGAA-ACCTTCCACACTCACCTCTTG--A-AAAG---------GCGTGAAATGTATTT-TAATTTGTACAAT-TTTA---AATATCGAGT-----GC-ACAA-TTG-ACTATGTACGTTTTCAATTTATGTT-G-CGTACTTAAAACCCAATAACTCTGATCCATAAGT-G-AGG-GTCGGTGTGACCATAGTGTCAAATAATTTTCA-------TTATTCA--TT-GTGATC--A---AAATATCTATCACTTTTTTT---------AAGTTTATAAA--TAA--AA--A-TTATGG---CCTTT-T----TTGAACGGCGAGCATATCTTTAGCTTTC-GA--TCATATTAGTTTTGGTGTAATGTAT-A-AA--CCCATAATTTTATAGCAAGGAACA---TTTGTGA-T-A-T--TT--------G-CCCCGTAATAT----GT--CCAGATTTCA-TT-------T-----C--TGCGTA---A-ATAGCTGCC----------------GTTTCTAAACACTATGACTTTGGTTTTCATA---AGAT-TAATT--TTCATACCT--GTTC----TG--TT---AC-AAAAACTTGAAATTATATTAAACTGCGACTGTAAAGGTCGAC--CAATAT-C--ACTACA-GTTGGCAATGTCATCAGCATACA-------A-AATG-AAATA-T--ATATCTACATGAATACCATT-T-G----------TACAT--G--ATTG-----TTTCCATTCAT-------CAACTAAATCATTAATAAAAAGATTAAATAAAATCGTGCTT-AAT-G--T--A-CAGCCTTGCC-TGCAACCAATATTGCA
gi|5 : tgaaattcgtcttctattacacaaaatacataatctatcagcataagcaacatttgtatgtctctctgttacaacaaataacgaatgttttgaacagtgcagttttgagagtgcaaTTTTA-TT-TTA---T-----C--TT---A---GTATA-CCGAC----------------ATTCCTAAGAACAACTTTTTTGTCTTT-GTA--CA--T-TGATT--TTCATTCAA--A--T----TA--AT---GC-AAAAAGAAGAAATGATATCAATCTGTGACTG--TAAGCCTATAACAGTAT-C--ACTA-ACGTTTGCCAAATCATCTGCATACATCACTGCA-AT-G-ACATATTCAGTTTCTG-----ATAT--TT-G-T--AGT-------CCTCTGATATCGGCTACTTTTAATTCATCA----ATA---AGATCATTAATAGATAATGAGAATTAAATCATGT-T-GA--GTTT--A-CACCCTTGCCGTGT-ACCTATGTTACAATTAACATTTT----TATTTA--CAATCATCAACCCTGACACATG
gi|5 : TCATATGCCGTAG-AAAA-TCA---AAGAAGAAACAATGAAATCTA-CCACCTT-TTTTGCTAAGA-TATCTTTGTGACATGGTCATT--AATGAAAATAAATTATCTGGTGTACTG--TAACCTTAACGAAATCCTGATGGCGGTTCGTC--T-AT-TTTATTATTTTC----------------TTCAGACT-AA--TTATAA-AGTCGTGTTTTCA----TCATGCCTGT----AAGTATCGTATTCAAAATATCAATT---GAAATtacaagggtttcatatgccgtagaaaatcaaagaagaaacaatgaaatctaccaccttttttgctaagatatctttgtgacatggtcattaatgaaaataaattatctggtgtactgtaaccttaacgaaatcctgatggcggttcgtctattttattattttcttcagactaattataaagtcgtgttttcatcatgcctgtaagtatcgtattcaaaatatcaattgaaatatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : ttttattttatcttagtataccgacattcctaagaacaacttttttgtctttgtacattgattttcattcaaattaatgcaaaaagaagaaatgatatcaatctgtgactgtaagcctataacagtatcactaacgtttgccaaatcatctgcatacatcactgcaatgacatattcagtttctgatatttgtagtcctctgatatcggctacttttaattcatcaataagatcattaatagataatgagaattaaatcatgttgagtttacacccttgccgtgtacctatgttacaattaacatttttatttacaatcatcaaccctgacacatgtacaagggttAGATCATTAATAA-TAATGAGAATAAGATTGTGC-T-GA--G--TAAA-CACCCTTACatacctatgaaataattagtatcattcattgaacccgatttataaagttgtcacagtatgctttctgaccaagcagcaggatacact
gi|7 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataTAT-CAACAAAATCTACC-ACCTT-TTT-GCT-AAAATATTTTTGTGTCATGGCCAT------ATAAATGAATTATCTGTTGT-------ACCTTTTACGAAATCCTGATTGCGCTTC--CAA-----ATTATTCTT--CAAACCAATTATATAGTTT----TT-GA--ATATTC-A----------TATATTACATACCTGT----AAGTATCGTATTCAAAATATCGATTAAAGATATAC--CTGTAAAGTCATTGGGCCC-GATTTA---agttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgtatcaacaaaatctaccacctttttgctaaaatatttttgtgtcatggccatataaatgaattatctgttgtaccttttacgaaatcctgattgcgcttccaaattattcttcaaaccaattatatagtttttgaatattcatatattacatacctgtaagtatcgtattcaaaatatcgattaaagatatacctgtaaagtcattgggcccgatttataaatcatttctgaaattattgcatcaggcccactacact
gi|8 : cttcaacggcatctccagtttctgatatttatattcctctgatatcggctccttttagttcatcaataagatcattaataataatgagaataagattgtgctgagtaaacacccttacagttatcaaccctgacaactgtatatacatttttatacatagcaacaaggagattttttcctccaactccttttcgGACCATA-CGGTTGTTGGTAATGTAAAATT-GGAAAAATAT--AA--A-ATATAG---TTTTA-TATGTTTGAGATGCTAGTTTCTGTTAGG---TCAGAGTCAATAACAGTCTTGGTGT-AAATAGCA-GA--CTCATGTACTAATAA---------ACTTTT---GTT-ACT--TTGATTTGAGATCCACG--A-AA----GTG-CCATCATTCA-TT-TTG---T-----C--TT---ATCCC-CTC-CCCCCCTTTTTCTTATTTCTAATTTCTAAATACAATAA-TTCAGTTAT-ATATCTAAATATAATTAACTCCTATCA--T--CCCTTTA--TTTCAACTAAAAT--TTCTACAGCATCAATTTGTAGTTA--ACGTTTTATAATGATGT-CT-ACAT-A-ATACGCAACAGCGTCTCCAAACA-------A-AA-taaatcatttctgaaattattgcatcaggcccactacact
gi|9 : atttgtgcATACTTTCGAT--ATTA-T-G-ACA--T--GCTTGACCACAGAATCAAATAA---AAA--GGA-ACAATTCA--TTGGTGGGA--A---AG-TGATCAT-ACGGTTGTTG-------GTAGT---GAAG--TATTGAG--G-CTATCGA--TTGTT-GA-GCTTGTGCTGAAAGCTTCTGTTGTGCTGCC-AA--CCATGAAAGACAAGGGGTAAAA-AT-T-CGT-CCCATATATTTGTAACCTGAGGTAACCTTT---A-T--GTGATT--------A----CA--ACAAAATTGT---CATTGCTCA-CT-GT----TTCTTAC--TA---G---G-TTC-CCACC----------------ATTTCTAAATACAATAATTTC-ATTT-------GAA---TAGTT--TT-ACACCGTTA--A----TG--TT---Aaaaata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTACATTGAATTGCAAGCATTTTGTTAGCTAAAGTCCATCTTGGTTTTGTTCTGAGTAAAGAATAGTATCATATTTTGAAACAGTGACACTGTTTCTACTATTTTCTCGTCAGGTACCTAATGTTCATTTACTCTGTGATAATTCCCATTTATAACCACTAGTATTACTGATTTCTTCAGATATATCCGCATAGCGGTTTTATTTGCAAAGGTTAGATAAAAATTGTTAAACAGCATCACTACAATTTGCCAAATCATCGGAATATGGTACCGCAAAAACATCATCTACTTTGTGTATACCATTAGCACAGCCGTGTTTTAGTTCTAATTCATTAACCAGCTTTCGAATAAAAATATTAAATAAAATCGTACTTAATTGACAGCCTTGGCGATAACCAACGTTACAATTGAAAATATTAGTATAATTATCACGATCGTACTGATTTTGATAATTATACTG
Unaligned ( gi|11 ): CCATAAAATTTAATGTTTAAAACGTTCAACTTAAATTAGAGATTACATTACTTTGAGATTGAAGTAGTCGTACAGTGCCGATGTATTTGTCCATGTCATCGGCATGTAAACATGCACTAATATCATGAACACCTTTTAAATATGAAAACTGTTGGCACAGTTTTGTTCAAGTTACTAGTATATGATTAAACGTTTTCTATAAATATTACATACAATTGTACTTAATTTACAACTTTGTCAACAACCGATGTTACAATTGATGAATTGTATTTACATCATGTTAATGACTCTAACATATAGTG
Unaligned ( gi|15 ): ATTGATTTGTGATTGGAATTGTCTAATATCGTCACTTCAATTTGCCAAGTCAGCGGCATATGATATTACCAATATATCATCCACCTGTTTTCGAAATATGTGTACACTTTGTATACGTATGTTTTCACTCTTCAACAAGACCATTAATAAAAATAATGAGAAACAAAAATATATACTTATCGGCAACGACTTG
Unaligned ( gi|18 ): GTTTTTAGTAAATATTCTTGTCATTTTAAAAAAAAAATACACAAACAATCATTGATGCGCTCTTTAAATATCTAAGGGAACATTGTATCATCACTAACACCATGGGATAATTACACATATCCAA
Unaligned ( gi|19 ): GCATCACTCACAGTTGCCAAATAGTCAAGTCATCTGCATACATCTTTGCCAAAATGTCATGATTATTTTCCGATATTTGAATTCCTTTTAAACCCGCCTGTTTTCAGTTAT