lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111
lowQualScore : 4444 11 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 1 1 1 1 3333333 1 55555555555 1 3333 11 11 333333 1111111 22222 11111 777777777777777 111 11 1111 2222222222 11111111 3333333333333333 11111 22222 222222 3333333333 222 1 33
lowQualScore : 6 6 5555 6 22 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 9 66 0 6 6 66 5 777 6 9 7 0 0 8 2222222 6 88 3 77777777777 7 9 6 5555 6 33 8 6 5 66 11 000000 66 4 5 8888888 5 9999 66666 11111 888 0 4 000000000000000 88 222 44 8888 9999999999 1 33333333 6 2 1111111111111111 77777 5 4 33333 4 2 555555 3 4 1111111111 4 555 3 6 5 88
lowQualScore : . . .... . .. ......................................................................................... . . .. . . . .. . ... . . . . . . ....... . .. . ........... . . . .... . .. . . . .. .. ...... .. . . ....... . .... ..... ..... ... . . ............... .. ... .. .... .......... . ........ . . ................ ..... . . ..... . . ...... . . .......... . ... . . . ..
lowQualScore : 0 0 0000 0 00 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 77 7 0 0 00 0 777 0 0 0 0 0 2 5555555 5 00 2 00000000000 0 7 0 7777 0 88 0 7 0 99 44 555555 11 4 0 4444444 0 5555 88888 66666 888 2 1 555555555555555 22 888 11 6666 7777777777 7 88888888 7 7 3333333333333333 22222 7 0 55555 4 6 777777 1 8 1111111111 2 333 5 7 3 00
consensus : AAATGACAATGGGACCGCGGCGTGGTCTAGTGGTAGAGCGTCCGCCTCGCATGCGGAAGGTCATGGG------TTCGAT-------C-C------------CCAA-GACTTT---AAA--AA-TGGTACTAGAAGCTTCCTTGCTTGACGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCGACGCTAAACACCAC---ACAACAACA--AA-TA-A-A--ACAA-GAA-N--CATGCAG--C-ACAGCTGCTT-TGAAAA-GA-T-GATA---TAGAGAATNGCGTTTAACTGCC--GTA---AATAATCAATTCCAA--------A--CGTACAATTGCTTGTNNTGTAAA--T-GTTTA-C--------TACTTAAA-TNCT--GCAACAAATACATATA-----TT-TATCCA-GGTCGAAACGACCTCG-TGTACGA-AAC----GACTAAGGTAGTTTG-TAT--T-GTGACGGATGTGTAATAATTA------TN--GCAAACC-G-TTAGTCTGTTTT-TGTTGTTTA
Reference ( gi|1 ) : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTAGAG------------ATGCAGATATTCATTGG------CCCGAT------ATCC------------CCAATGAATGG---AAA--AAATGTTATTAGAAGCTTCCTCGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAACACCAT---ACAATAACA--AA-TA-A-A--ACAA-GAA-C--C-TGCAG--C-ACAGCTGCTT-TGACAA-GA-T-GATA---TAGAGAATTTCATTTAACTGCC--GTA---AATAATCAATTCTAA--------T--CCCCCAGCTGCGTGTAGTGTAAA--T-GTTTA-C--------TACCTAAA-TCCT--GTAACAAATACACATACGTTTTTTTATTAATGGTCGAAACGACCTCT-TATACGA-AAG----GACTGAAATAGTTTG--AT--T-GTGACGAATGTGTAATAATTA------CA--GCGAACCTG-TTAGTTTGTTGTATGTGATTTA
gi|4 : AAATGACAA--G-ACGGCAGTGTGGTCTAGTGGTAGAACGTCTGTCTCGCATGCGGAAGGTCATGGGTTCAATCCCGATCGGGTTATAC------------CAAA-GACTTT---AAA--AA-TGGTACTAGAAGCTTCCTTGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAACACCAT---ACAACAACA--ACTTA-A-ATGACAA--AA-T--A-TACAAACC-ACAACT
gi|6 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaACAATGGGACCGCGGCGTGGTCTAGTGGTAGAGCGTCCACCTCGCATGCAGAAGGTCCTGGG------TTCAAT---------C------------CC--TGGCCGGGTCATACCAAAGGT-ACTAGAAGCTTCCTTGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAACACCACTAAACAACAACA--Acatataaaaacatttgctacacac
gi|5 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgacccACCGCAGCATGGTCTAGTGGTAGAGCGTCCGCCTCGCATGCGGAAGGTCATGGG------TTCGAT------CCTCGGCCGGGTCAGACCAAAGACTTT---AAA--AA-TGGTACTAGAAGCTTCCTAGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACA----ACAGCAGCAGCAG-CA-ACA--GCAA-TAA-TAAC-AGCAG--CAACAGCAGCcaacaactgacccacaatgatcctgctggaca
gi|5 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgatttgagTGGAGTATCATGCCGCAGACACGTGGTATGATACCCCAagcagcaacaacaac
gi|31 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgatttgagaccgcagcatggtctagtggtagagcgtccgcctcgcatgcggaaggtcatgggttcgatcctcggccgggtcagaccaaagactttaaaaatggtactagaagcttcctagcttggcgctcagcatttagaggacagttctaggtctggtcggcccggtgtcagtataatgtgactgggTGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAgtgtgacagcgctcagaatactgtctgaagtagacactgtcgcgatatgactgaaaaattgttgaaagagacgctaaacaacaacagcagcagcagcaacagcaataataacagcagcaacagcagcagcagcaacaacaac
gi|20 : atctggagcacCA--AA-TA-A-T--ATAC-GAA-A--CATGCAG--C-GTAA--GTTTCTGAAAA-GT-T-GATA---TAAAGATATGCGTTTAACTGCA--GTT---AATAATCGATTCCAA-----------GCGTGAACTACTTGATGAGTAAA--T-ATCTA-C--------TGTTTAAG-Tt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgA-TG-A-A--ACAATGCA-T--A-TGCAG--C-ATAACTGCTT-TGGAAA-AA-T-GATA---CATGGAA-TTAGGTTAACTGCT--TTATTGAATA---AATTCCAA--------
gi|33 : aaaaacA-TATA-A--ACAA-GAA-A--TATTCAG--C-ACAGCTACTT-TG-CAA-AA-TAGATT---TAAAGAATTacatacaaccatttgtttgtaatactctacaactaaaatatttattcaatttaaa
gi|13 : tcg-A-A--ACAC-GAA-G--CATGCAG--C-AAAGTTGCTT-TGAAAA-AAGT-GATT---TAGAGAATTGCTTTAAACTGTT--ATA---AATGATCAATTCCAA--------A--CGTACAATTGATTGTCCTATAAA--G-GTTTA-TTTTCTCAATACTTAAATTCTT--GTTATATATATATAa
gi|3 : at-A--GCAA-GAAAC--C-TGGAG--C-ACATATGGAT-TGAAGACGA-A-GATA---CAAAGAATA-CATTTAACTGACAAATA---TGTAATCAGTCTCAA--------A--CATGCATCTGCTTGTG--GCAAA--G-GTTTA-C--------TAGCTAAA-TACT--GAAAaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|27 : c-A--ACAACAAA-C--C-TGCTG--C-AGGGCTGCTT-TAA-AA-G--T-GATT---TAGAGAGTAAGGTTTAACT--C--GTA---AATAATTGGTTCCAA--------attgtatttattatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|2 : AA--C-ACAGCTTATT-TGA--A-AA-T-TTTAAATTGGAGAATAATATTTAACTGCC--ATA---AATGATAAATTCCAA--------A--CGTACAATTGATTGTTATGTTTA--G-GTTTA-C--------TATTTAAA-TACT--atgggcagttg
gi|10 : tataattGCTGCTA-TGAAAA-TG-T-GATA---CAGA------CCTTTAACTGGT--TTA---AATAATCAATTCTAAC-------T--GTTACAATTGCTTGTTGTGTAAA--A-GTTAA-C--------TGTTTAAA-TACT--aaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|8 : TGCC--ATA---AATAATTAATTCCAAACGTTTGTTAACACACAATT-TGT-TATCATAAAGTT-GTTTG-----------ACTTAA-----T--GGAGCAA---CATATA-----TTCTATCCAAAGTCCAACTG-CCTTTATGTATGA-AATACATGACTAAGGTGGTTTG--ATATT-GTGATGGATGTGTAATAATT-------CAATGCAAACTTttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : TAATATAAA--T-GTGTT-T--------GACCTACA-GTCA--GCAACAAATATATAT---TTTCTGTAT--A-----GAAACAACCTTG-TGTA--------------TGAAACAA------AT--T-GTGATGGATGTGCAATTATTA------TA--GCAAACCAT-TCAGTCTGTTTTATtgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
gi|2 : agttgggtaaaaatttgaaattgctatacttacaactttatttgtttAATATAAAGTT-GTTTG-----------ACCTAAA-GTCA--GCAACAAATACAAATAT---------TCAA-GGTCAAAACGACCTTG-TGCACAA-AAC----GACTAAGGTAGTTGGATAT--T-GTGACGGATGTGTAATGATTA------T----TGAAATTGATTAGCCTGCTGT-TGTTGTTTtaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|7 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacTAAA--TCGTTTAACA-------TACGTA---TCATCAGCAACAAATATATATGTGCTT--------AGGGTCGAAACCCCCGTT-TGTACGA-ATT----GACTAGTGTAACTTGATAT--T-GCGACGGATAGGTAGAGATTATATATGTA--GTAAACCGG-TTCGTCTATTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|15 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatAG-TCC---GCAACAAATGCACATA----------TTCCCGGTCGAAACGAGATCA-CGTACGA-AGC----GACTAAGATACTTTG------T-ATGAtcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|17 : gtattataatacaagttgtttggacagtggAACAAATACTCATAA----TTATAATCACAGTTAAAACAACCTTA-TGTA-GATAAC----AACTAAAATAGTTTGGTAT--T-GTGACGGATGTGTAATAGTTA------TA--GCAAACCAG-TTGGTCTGTTTTCTGT--TTTAtactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|10 : TCGAAACGACCTCA-AGTACAA-AAC----GACTAAGGTTTTTTG--GTG-TAGTGGCGGGTGTATttatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|34 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatatACGACCTCA-TGTAAGA-AAC----AAATAAAATTGTTTGATAT--T-GTGACGGTTGTGTAATAATca
gi|9 : ACCTTG-TGTACGA-AAC----AACTAAGGTAGTTTGATAT--T-GTGACGGATATGTAATA
gi|3 : aaaacaaatggtgacagcttA-AAT----GACTAAGATTGTTTG--ATATT-ATGGCGGATGTGTAATAATTA------TT--GCAAACC-----AGTCTGTTgccaatgtttggccttgtatttttctagataagttggttagttttggttagtcgcacatagttgaaaacagttaaataaaacagccgtcaatttacacacatataaatcaataaatgtgtcgcccctttgcttaggcgttgaccagaaattgaatttctaaaaaagcatttacaatatactt
gi|37 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtatttattatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaTAGTTTGGTAT--T-GTGACGGATGTGAAAAAATTA------TT--GTAAACCtcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|26 : tggTG--AT--T-GTAACAGATATGCAATAATTA------TT--GCAAACC-----AGTTTG
gi|18 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgagga--AT--T-ATGACGAATGTGCAATAATTA------TT--GCAAATC-G-TT
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AACAAAATAAATACAGCTCAACAAAAGTGAGTGGGGGAATAAGATTTAACAGCCATAAAACAACTAGTTCCAAACGTACAACTAAGTGCTATATACAGGTCTATTATTTAAACATTTTATTTTCATAATATTTCTTTGTCATATAAATGTGACTATTAGTCGGAAACAAACACACATACTTGGGGGATCTAAACTACGTTGTGTATGAAACG
Unaligned ( gi|14 ): TAACATAAAAGATAATTTGATAATTTGTATATTTTATCTATCTATATAAAAAATATTTTTGGTTATAAAATTGTGGTTCCTATCAGAACCGTCACCTCGGTGTCTAGTGGTATATGTTAAACGTCCATCTTGCATGCAGGGGTTTGTGTGTTTATGAAGGGTTTATGCAAACAATTGTTAGAAGCCTATGTTAACACTGCATC
Unaligned ( gi|16 ): AATATAATTTAAACTGCATTAATAGTAAGTTTCAAAGGTACACATTCTAATTGTGTATTATTAAAGATTAACTTTTTCAATTCTCAAAAGTGTTTATTGTTATATAAATAGGAAGTTGTTTGCCATAGAGTCAGCAGCGACTACACATATTCAGGATCGAAATTGCGTCGTGTACGAAACGACTACAG
Unaligned ( gi|19 ): GACTACAACAAGTACACATAGTCATGGATGATATGACCATGTGTGTGAAATGACTATGATTGTTTAATATTTGATGGATACGCATTCATTATAAGTCACTTCTCATTAACTATTTTCATGAATGCACATTCAGAGATACATGCTGTAAATCATAATCTTGAATATCAAGTACATT
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|23 ): ACTGAATTATTCATATTGTAACGGAAGTGCAATTAACATCGCAAATCGATTAAACTGTCATCTGTTTAATTAGACGTTTTCATGTTTGTTCGTCTTACGATGTTTAATAACATCTAA
Unaligned ( gi|24 ): GGTAGAGCATTGTCTCGTACGCAGGAGGTATTGGGTTCGATTTGGTAAATAATATTAATAACTTCCTGACATGCCACTCAGTACTTAGTGGAATGTTCAACTTGTATTTGAC
Unaligned ( gi|25 ): ACTAAGAACAATACATGAGGTATTTTGTAGTTCTGACTGGGAGTGCAATACACATTGCAAACCTGTTTATTTCATTAGACGTTTTCAAATGAATGCATCGTACGATA
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT
Unaligned ( gi|29 ): TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACTCTTGACATTCCTGAGTTTGGCAGTGCTTTATATAATGTTGACT
Unaligned ( gi|30 ): AGTGGTGGTAAAGCCTGTCTCTCAAGTGGTGTGTTAACGGTTCGATCCCAATCGAGTGATAACAAATACTTTACA
Unaligned ( gi|32 ): GCCGTAAATAATAAATCCCAAACTGTACAATAGTTTGTTGTGTTAACTATTTAAATACTG
Unaligned ( gi|35 ): GTGATCTAGGGATACTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAATC
Unaligned ( gi|36 ): TAAGGTAGTTTGACATTGTGACGGATGTACACTTGATGCAAACTTGTGC
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 111 111111 0000000000000000000000000000000000000 1111111 2222222 1 1 1 44444444444 1111 2222 1111111111 11 22222222222 1111111111 11 4444444444444444444444444 1111 2 222 1
lowQualScore : 888 1 666666 77 666 1 0 4 9999999999999999999999999999999999999 5 5555555 6 66 0 1 3 2 8 8 6666666 0 2 0 0 0 0 11111111111 99 5 4 55 4 1 0 55 3 0 3 7777 3 1 4 4 0000 555 555 3 6666 3 3 3 6666666666 44 4 00 2 444 00000000000 7777777777 3 2 11 55 4 2 444 1 9999999999999999999999999 2 3 1 44 3 3 3333 2 4 2 33 3 999999 1 777 4 6
lowQualScore : ... . ...... .. ... . . . ..................................... . ....... . .. . . . . . . ....... . . . . . . ........... .. . . .. . . . .. . . . .... . . . . .... ... ... . .... . . . .......... .. . .. . ... ........... .......... . . .. .. . . ... . ......................... . . . .. . . .... . . . .. . ...... . ... . .
lowQualScore : 222 0 444444 99 111 4 3 0 6666666666666666666666666666666666666 2 2222222 7 00 7 4 7 0 0 0 0000000 8 0 0 0 2 0 00000000000 22 7 0 55 0 0 7 00 6 5 6 5555 6 4 0 0 7777 444 888 3 1111 1 1 1 5555555555 22 4 77 5 111 22222222222 8888888888 5 4 00 66 0 9 555 0 4444444444444444444444444 0 1 2 22 1 1 1111 9 0 5 77 3 666666 0 888 4 0
consensus : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------GTTTA-C--------TACTTA-AATNC-NGCAAC-AAATACACATA------T--T-TAT--CC-G-GG--TCGAAACGACCTCG--TGTA-CGA-A----ACGACTAAGGTAGTTT-GATA-TTGTGAC--GGATGTGTAATAATT-A------TTGCAAACC-G-TT-AGTCTGTTTT-TGTTGTTTA
Reference ( family-1772 ) : AAATGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAANCATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNGCGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGCTTGTNNT-G---TAAA--T--------GTTTA-C--------TACTTA-AATNC-TGCAAC-AAATACATATA------T--T-TAT--CC-A-GG--TCGAAACGACCTCG--TGTA-CGA-A----ACGACTAAGGTAGTTT-G-TA-TTGTGAC--GGATGTGTAATAATT-A------TNGCAAACC-G-TT-AGTCTGTTTT-TGTTGTTTA
gi|1 : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTA------GAG--------------ATGCAGATATTCATTGGCCCGATATCCC-------------C---------------AATGAATGGA---AA--AAATGTTATTAGAAGCTTCCT-CGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAAC-ACCAT---A-------CAATAACA--AATA-A-AACA--A-GAACC-TGCAG--CA-CAGCTGCTT-TGACAA-GA-T-GATAT-AGAGA-ATTTCATTTAACTGCC--GTA---AA-TAATC---AATT-C-TAATC-CC----------CCAG--CTGCGTGTAGT-G---TAAA--T--------GTTTA-C--------TACCTA-AATCC-TGTAAC-AAATACACATACGTTTTT--T-TAT--TA-ATGG--TCGAAACGACCTCT--TATA-CGA-A----AGGACTGAAATAGTTT-G--A-TTGTGAC--GAATGTGTAATAATT-A------CAGCGAACCTG-TT-AGTTTGTTGTATGTGATTTA
gi|10 : GCTGCTA-TGAAAA-TG-T-GATAC-AGA-------CCTTTAACTGGT--TTA---AA-TAATC---AATT-C-TAACT-GTT---------ACAA--TTGCTTGTTGT-G---TAAA--A--------GTTAA-C--------TGTTTA-AATAC-T
gi|10 : TTGTTAT-G---T-----T--------GTTTA-----------ACCTA-GAGTC-ATAAAC-AAA---ATAT--------------------------TCGAAACGACCTCA--AGTA-CAA-A----ACGACTAAGGTTTTTTGG-TG-TAGTGGC--GGGTGTATttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaa--GTA---AA--AATTTGAAATTGC-TATAC-TT----------ACAACTTTATTTGTTTT-AATATAAA--T--------GTGTT-T--------GACCTA-CAGTC-AGCAAC-AAATA--TATA------T--T-T-T--CT-G-TA--TAGAAACAACCTTG--TGTA-TGA-A----ACAA----------------A-TTGTGAT--GGATGTGCAATTATT-A------TAGCAAACC-A-TTCAGTCTGTTTT-ca
gi|12 : agttgg-AACA--A-AATAAATACAG--CT-CAAC--------AAAA-G--T-GAGTG-GGGGA-ATAAGATTTAACAGCC--ATA---AAACAACT---AGTT-C-CAAAC-GT----------ACAA--CTAAGTGCTAT-A---TACA--G--------GTCTA-T--------TATTTA-AAattaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|12 : TTGTCAT-A---TAAA--T--------G-TGA-C--------TA-TTA-G--TC-GGAAAC-AAACACACATA------C--T-TG------G-GGGATCTAAACTACGTTG--TGTA-TGA-A----ACGcattttattttcataatatttctttgtcatataaatgtgactattagtcggaaacaaacacacatacttgggggatctaaactacgttgtgtatgaaacg
gi|13 : aacaaaataaatacagctcaacaaaagtgagtgggggaataagatttaacagccataaaacaactagttccaaacgtacaactaagtgctatatacaggtctattatttaaacattttattttcataatatttct-A-AACA--C-GAAGCATGCAG--CA-AAGTTGCTT-TGAAAA-AAGT-GATTT-AGAGA-ATTGCTTTAAACTGTT--ATA---AA-TGATC---AATT-C-CAAAC-GT----------ACAA--TTGATTGTCCT-A---TAAA--G--------GTTTA-TTTTCTCAATACTTA-AATTCTTGTTAT-ATATATATA
gi|14 : atACCTCGGTGT---CTAGTGGTATATGTTAAAC--GTCCATCTTGCATGCAGGGGTTTGTGTGTTT-AT------------------G---------------AA-GGGTTTATGCAAACAA-TTGT--TAGAAG---CCTATG-TTAACACT--GCATaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|15 : taacataaaagataatttgataatttgtatattttatctatctatataaaaaatatttttggttataaaattgtggttcctatcagaaccgtcC-CGCAAC-AAATGCACATA------T--T------CC-C-GG--TCGAAACGAGATCA--CGTA-CGA-A----GCGACTAAGATACTTT-G-TA-Tc
gi|16 : gtattataatacaagttgtttggacagtggagtTC---AATT-CTCAAAA-GT----------G-----TTTATTGTTAT-A---TAAA--TAGGAAGTTGTTTG-C--------CA--TA-GAGTC-AGCAGC-GACTACACATA------T--T-------C-A-GGA-TCGAAATTGCGTCG--TGTA-CGA-A----ACGACTAgatactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|17 : aatataatttaaactgcattaatagtaagtttcaaaggtacacattctaattgtgtattattaaagattaacttttAAC-AAATACTCATA------A--T-TATAATC-ACAG--TTAAAACAACCTTA--TGTA--GATA----ACAACTAAAATAGTTT-GGTA-TTGTGAC--GGATGTGTAATAGTT-A------TAGCAAACCAG-TT-GGTCTGTTTTCTGTTcag
gi|18 : -TA-TTATGAC--GAATGTGCAATAATT-A------TTGCAAATC-GTTT-CGTCTCTCTC-TGttattatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|2 : agtaaatcagtaacatgcgattcgtAA--CA-CAGCTTATT-TGAAAA-TT-T-TAAATTGGAGA-ATAATATTTAACTGCC--ATA---AA-TGATA---AATT-C-CAAAC-GT----------ACAA--TTGATTGTTAT-G---TTTA--G--------GTTTA-C--------TATTTA-AATAC-Tccagacgttgtttttttaggcgcgtgcgtctatcgatacagattaacttctcttcacatctccgacacctgtttttcataaagttatcatagaatatgatca
gi|2 : tataattT-A---TAAAGTT--------GTTTG-----------ACCTA-AAGTC-AGCAAC-AAATACAAATA------T--T-CA------A-GG--TCAAAACGACCTTG--TGCA-CAA-A----ACGACTAAGGTAGTTG-GATA-TTGTGAC--GGATGTGTAATGATT-A------TTG-AAATT-GATT-AGCCTGCTGT-TGTTGTTTaaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|20 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacaaCA--AATA-A-TATA--C-GAAACATGCAG--CG-TAA--GTTTCTGAAAA-GT-T-GATAT-AAAGATAT-GCGTTTAACTGCA--GTT---AA-TAATC---GATT-C-CAAGC-GT----------G-AA--CTACTTGATGA-G---TAAA--T--------ATCTA-C--------TGTTTA-AGTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgAAAAACA----TG-A-AACA--A-TGCATATGCAG--CA-TAACTGCTT-TGGAAA-AA-T-GATAC-ATGGA-ATTA-GGTTAACTGCT--TTATTGAA-TA------AATT-C-CAAAC-AT----------ACAA--CCATTTGT-TT-G---TAA---------------TA-C--------T----------C-TACAACTAAA-----ATA------T--T-TAT--TC-A-
gi|24 : GGTA------GAGC--ATT-GTCTCGTACGCAGGAGGTATTGGGTTCGAT----------------------------------------TTGG---TA--AA-TAATATTAATAACTTCCT-GACATGCCACTCAGTACTTAGTGGAATGTTCatttaaa
gi|25 : TGAGGTATTTT-G-TAGTTCTGACTGGGA-GTGCAATACAC-A------TTGCAAACCTG-TT-aacttgtatttgac
gi|26 : actaagaacaatacaA-TTGTAAC--AGATATGCAATAATT-A------TTGCAAACC------AGTTTGtatttcattagacgttttcaaatgaatgcatcgtacgata
gi|27 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgaggatg-AACA--A-CAAACCTGCTG--CA-GGGCTGCTT-T-AAAA-G--T-GATTT-AGAGA-GTAAGGTTTAACT--C--GTA---AA-TAATT---GGTT-C-CAAAT-GG----------GCAG--TTG
gi|29 : -TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACT
gi|3 : -AGCA--A-GAAACCTGGAG--CA-CATATGGAT-TGAAGACGA-A-GATAC-AAAGA-ATA-CATTTAACTGACAAATA---TG-TAATC---AGTC-T-CAAAC-AT----------GCAT--CTGCTTGTG---G---CAAA--G--------GTTTA-C--------TAGCTA-AATAC-TG-A---AAAT---TGTA------T--T-TAT--cttgacattcctgagtttggcagtgctttatataatgttgact
gi|3 : cTTATATT-G---TAAAGAT--------GTTTG-----------ACT---AA-------AAC-AAA-ACACATG------T--T-------C-A-GAA-TC-AGATTACCT-G--TTTAACGA-AGAAAATGACTAAGATTGTTT-GATA-TTATGGC--GGATGTGTAATAATT-A------TTGCAAACC------AGTCTGTTTtatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|31 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtatttaTCTGGAGCAC--TGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|32 : aGCC--GTA---AA-TAATA---AATC-C-CAAACTGT----------ACAA--TAGTTTGT--T-G---------T--------GTTAA-C--------TATTTA-AATAC-TGt
gi|33 : ATATA-AACA--A-GAAATATTCAG--CA-CAGCTACTT-TGCAAA--A-TAGATTT-AAAGA-AT
gi|34 : tcgACGACCTCA--TGTA-AGA-A----ACAAATAAAATTGTTT-GATA-TTGTGAC--GGTTGTGTAATAATta
gi|35 : GTGATCTAGGGATA------CTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAAT--C
gi|36 : TAAGGTAGTTT-GACA-TTGTGAC--GGATGT---ACACTT-G------ATGCAAAC
gi|37 : GGTAGTTT-GGTA-TTGTGAC--GGATGTGAAAAAATT-A------TTGTAAACC-ttgtgc
gi|4 : tAAATGACAA---GACGGCAGTGTGGTCTAGTGGTA------GAAC--GTCTGTCTCGCATGCGGAAGGTCATGGGTTCAAT--CCCGATCGGGTTATACC---------------AAAGACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAAC-ACCAT---A-------CAACAACA--ACTT-A-AATG--ACAAAATATACAAACCA-CAACTCATA-TAAAAA-CA-T-
gi|5 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaTGAGACCGCAGCATGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT--CCT-------------CGGCCGGGTCAGACCAAA-GACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-AGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACAAC---AGCAGCAGCAGCAACAGCAATA-ATAACAGCA-GCAACA-GCAG--CAGCAGCttgctacacac
gi|6 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgattACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCACCTCGCATGCAGAAGGTCCTGGGTTCAAT--CCCTGG----------C---------------CG-GGTCATA---CC--AA-AGGTACTAGAAGCTTCCT-TGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAAC-ACCACTAAA-------CAACAACA--Aaacaacaac
gi|7 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgaccc---TAAA--TC-------GTTTAACA-------TACGTATCAT-C-AGCAAC-AAATATATATG------TGCT-TA------G-GG--TCGAAAC--CCCCGTTTGTA-CGA-A----TTGACTAGTGTAACTT-GATA-TTGCGAC--GGATAGGTAGAGATT-ATATATGTAGTAAACCGG-TT-CGTCTATTTcaacaactgacccacaatgatcctgctggaca
gi|8 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatTGCC--ATA---AA-TAATT---AATT-C-CAAAC-GTTTGTTAACACACAA--T---TTGTTATCA---TAAAGTT--------GTTTG-----------ACTTA-A-----TGGAGC-A---ACATATA------T--TCTAT--CCAA-AG--TCCAACTGCCTTTA--TGTA-TGA-AATACATGACTAAGGTGGTTT-GATA-TTGTGAT--GGATGTGTAATAATTCA------ATGCAAACcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|9 : ACCTTG--TGTA-CGA-A----ACAACTAAGGTAGTTT-GATA-TTGTGAC--GGATATGTAATAtttgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): GACTACAACAAGTACACATAGTCATGGATGATATGACCATGTGTGTGAAATGACTATGATTGTTTAATATTTGATGGATACGCATTCATTATAAGTCACTTCTCATTAACTATTTTCATGAATGCACATTCAGAGATACATGCTGTAAATCATAATCTTGAATATCAAGTACATT
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|23 ): ACTGAATTATTCATATTGTAACGGAAGTGCAATTAACATCGCAAATCGATTAAACTGTCATCTGTTTAATTAGACGTTTTCATGTTTGTTCGTCTTACGATGTTTAATAACATCTAA
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT
Unaligned ( gi|30 ): AGTGGTGGTAAAGCCTGTCTCTCAAGTGGTGTGTTAACGGTTCGATCCCAATCGAGTGATAACAAATACTTTACA
Alignments
lowQualScore : 111 111111 9999999999999999999999999999999999999 1111111 2222222 1 1 1 44444444444 1111 1111 1111111111 11111111111 11111111111 55555555555555555555555555 222 1
lowQualScore : 888 1 444444 888 5 2 7777777777777777777777777777777777777 3 5555555 6 66 0 1 1 8 8 6666666 0 0 0 0 0 11111111111 99 5 4 55 4 55 3 0 3 7777 3 1 4 4 4444 555 555 3 6666 3 3 3 6666666666 33 44 6666666 88888888888 2 88888888888 2 2 66 2 1 44 00000000000000000000000000 1 2 1 33 2 2 6666 6666 0 4 2 2 33 2 8888888 888 4 5 3
lowQualScore : ... . ...... ... . . ..................................... . ....... . .. . . . . . ....... . . . . . ........... .. . . .. . .. . . . .... . . . . .... ... ... . .... . . . .......... .. .. ....... ........... . ........... . . .. . . .. .......................... . . . .. . . .... .... . . . . .. . ....... ... . . .
lowQualScore : 222 0 444444 222 4 2 2222222222222222222222222222222222222 3 2222222 7 00 7 4 0 0 0 0000000 8 0 0 2 0 00000000000 22 7 0 55 0 00 6 5 6 5555 6 4 0 0 3333 444 888 3 1111 1 1 1 5555555555 77 66 9999999 88888888888 4 33333333333 1 4 33 1 8 99 00000000000000000000000000 0 1 6 99 9 9 1111 1111 5 4 2 2 22 9 7777777 111 0 0 3
consensus : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------T--T-TAT---C-G-G-G--TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
Reference ( family-1772 ) : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------T--T-TAT---CCG-G-G--TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
gi|1 : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTA------GAG--------------ATGCAGATATTCATTGGCCCGATATCCC-------------C---------------AATGAATGGA---AA--AAATGTTATTAGAAGCTTCCT-CGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAAC-ACCAT---A-------CAATAACA--AATA-A-AACA--A-G-AACCTGCAG--CA-CAGCTGCTT-TGACAA-GA-T-GATAT-AGAGA-ATTTCATTTAACTGCC--GTA---AA-TAATC---AATT-C-TAATC-CC----------CCAG--CTGCGTGTAGT-G---TAAA--T--------G-TTTA-C--------TACCTA-AATCCTGTAACAAATACACATACGTTTTT--T-TAT---TAATG-G--TCGAAACGACCTCT--TATA-CGA-A----AG----GACTGAAATAGTTTG---A-TTGTGAC--GAATGTGTAATAATT-AC-A-----GCGAACCTG-TT-AGTTTGTT-GTATGTGATTTA
gi|10 : GCTGCTA-TGAAAA-TG-T-GATAC-AGA-------CCTTTAACTGGT--TTA---AA-TAATC---AATT-C-TAACT-GTT---------ACAA--TTGCTTGTTGT-G---TAAA--A--------G-TTAA-C--------TGTTTA-AATAC
gi|10 : TTGTTAT-G---T-----T--------G-TTTA-----------ACCTA-GAGTCATAAACAAA-----ATA------T--T-----------------CGAAACGACCTCA--AGTA-CAA-A----AC----GACTAAGGTTTTTTGGT-G-TAGTGGC--GGGTGTATtttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaa--GTA---AA--AATTTGAAATTGC-TATAC-TT----------ACAACTTTATTTGTTTT-AATATAAA--T--------G-TGTT-T--------GACCTA-CAGTCAGCAACAAAT--ATATA------T--T-T-T---CTG-T-A--TAGAAACAACCTTG--TGTA-TGA-A----AC----AA----------------A-TTGTGAT--GGATGTGCAATTATT-AT-A-----GCAAACC-A-TTCAGTCTGTT-TT-ca
gi|12 : agttgg-AACA--A-AATAAATACAG--CT-CAAC--------AAAA-G--T-GAGTG-GGGGA-ATAAGATTTAACAGCC--ATA---AAACAACT---AGTT-C-CAAAC-GT----------ACAA--CTAAGTGCTAT-A---TACA--G--------G-TCTA-T--------TATTTA-AAattaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|12 : --TTCTTTGTCAT-A---TAAA--T--------G-TG-A-C--------TA-TTA-G--TCGGAAACAAACACACATA------C--T-TG------G-G-GGATCTAAACTACGTTG--TGTA-TGA-A----AC----Gcattttattttcataatatttctttgtcatataaatgtgactattagtcggaaacaaacacacatacttgggggatctaaactacgttgtgtatgaaacg
gi|13 : aacaaaataaatacagctcaacaaaagtgagtgggggaataagatttaacagccataaaacaactagttccaaacgtacaactaagtgctatatacaggtctattatttaaacattttattttcataatat-A-AACA--C-GAAGCATGCAG--CA-AAGTTGCTT-TGAAAA-AAGT-GATTT-AGAGA-ATTGCTTTAAACTGTT--ATA---AA-TGATC---AATT-C-CAAAC-GT----------ACAA--TTGATTGTCCT-A---TAAA--G--------G-TTTA-TTTTCTCAATACTTA-AATTC
gi|14 : atACCTCGGTGT---CTAGTGGTATATGTTAAAC--GTCCATCTTGCATGCAGGGGTTTGTGTGTTT-AT------------------G---------------AA-GGGTTTATGCAAACAA-TTGT--TAGAAG---CCTATG-TTAACACT--GCATttgttatatatatataaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|15 : taacataaaagataatttgataatttgtatattttatctatctatataaaaaatatttttggttataaaattgtggttcctatcagaaccgtcCCGCAACAAATGCACATA------T--T-------CCC-G-G--TCGAAACGAGATCA--CGTA-CGA-A----GC----GACTAAGATACTTTG-T-A-Tc
gi|16 : gtattataatacaagttgtttggacagtggagtTC---AATT-CTCAAAA-GT----------G-----TTTATTGTTAT-A---TAAA--TAGGAAGTTG-TTTG-C--------CA--TA-GAGTCAGCAGCGACTACACATA------T--T-CA------G-G-A--TCGAAATTGCGTCG--TGTA-CGA-A----AC----GACTAgatactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|17 : aatataatttaaactgcattaatagtaagtttcaaaggtacacattctaattgtgtattattaaagattaacttttAACAAATACTCATA------A--T-TATAATCAC-A-G--TTAAAACAACCTTA--TGTA--GATA----AC----AACTAAAATAGTTTGGT-A-TTGTGAC--GGATGTGTAATAGTT-AT-A-----GCAAACCAG-TT-GGTCTGTT-TTCTGTTcag
gi|18 : TTCGTT-A-TTATGAC--GAATGTGCAATAATT-AT-T-----GCAAATC-GTTT-CGTCTCTC-TC-TGttattatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|19 : agtaaatcagtaacatgcgaCTACAACAAGTACACATA------G--T-CAT-----G-G-A--T-GATATGACCATG--TGTG-TGA-A----AT----GACTATGATTGTTTAAT-A-TT-TGAT--GGATACGCATTCATT-AT-ccagacgttgtttttttaggcgcgtgcgtctatcgatacagattaacttctcttcacatctccgacacctgtttttcataaagttatcatagaatatgatca
gi|2 : gaAA--CA-CAGCTTATT-TGAAAA-TT-T-TAAATTGGAGA-ATAATATTTAACTGCC--ATA---AA-TGATA---AATT-C-CAAAC-GT----------ACAA--TTGATTGTTAT-G---TTTA--G--------G-TTTA-C--------TATTTA-AATACaagtcacttctcattaactattttcatgaatgcacattcagagatacatgctgtaaatcataatcttgaatatcaagtacatt
gi|2 : tataattT-A---TAAAGTT--------G-TTTG-----------ACCTA-AAGTCAGCAACAAATACAAATA------T--T-CA------A-G-G--TCAAAACGACCTTG--TGCA-CAA-A----AC----GACTAAGGTAGTTGGAT-A-TTGTGAC--GGATGTGTAATGATT-AT-T-----G-AAATT-GATT-AGCCTGCT-GT-TGTTGTTTtaaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|20 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacaaCA--AATA-A-TATA--C-GAAACATGCAG--CG-TAA--GTTTCTGAAAA-GT-T-GATAT-AAAGATATG-CGTTTAACTGCA--GTT---AA-TAATC---GATT-C-CAAGC-GT----------G-AA--CTACTTGATGA-G---TAAA--T--------A-TCTA-C--------TGTTTA-AGTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgAAAAACA----TG-A-AACA--A-TGCATATGCAG--CA-TAACTGCTT-TGGAAA-AA-T-GATAC-ATGGA-ATTA-GGTTAACTGCT--TTATTGAA-TA------AATT-C-CAAAC-AT----------ACAA--CCATTTGTT-T-G---T-AA--T--------ACTCTA-C--------AACTAA-AAT
gi|23 : TTCAT-A-TTGTAAC--GGAAGTGCAATTAAC-AT-C-----GCAAATC-GATT-AAACTGTCATC-TGTTatttattcaatttaaa
gi|24 : actgaattaGGTA------GAGC--ATT-GTCTCGTACGCAGGAGGTATTGGGTTCGAT----------------------------------------TTGG---TA--AA-TAATATTAATAACTTCCT-GACATGCCACTCAGTACTTAGTGGAATGTTCtaattagacgttttcatgtttgttcgtcttacgatgtttaataacatctaa
gi|25 : TGAGGTATTTTG-T-AGTTCTGACTGGGA-GTGCAATACAC-AT-T-----GCAAACCTG-TT-aacttgtatttgac
gi|26 : actaagaacaatacaGATGA-TTGTAAC--AGATATGCAATAATT-AT-T-----GCAAACC------AGTTTGtatttcattagacgttttcaaatgaatgcatcgtacgata
gi|27 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgag-AACA--A-CAAACCTGCTG--CA-GGGCTGCTT-T-AAAA-G--T-GATTT-AGAGA-GTAAGGTTTAACT--C--GTA---AA-TAATT---GGTT-C-CAAAT-GG----------GCAG--TTG
gi|29 : -TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACT
gi|3 : -AGCA--A-GAAACCTGGAG--CA-CATATGGAT-TGAAGACGA-A-GATAC-AAAGA-AT-ACATTTAACTGACAAATA---TG-TAATC---AGTC-T-CAAAC-AT----------GCAT--CTGCTTGT--G-G---CAAA--G--------G-TTTA-C--------TAGCTA-AATACTG-A--AAAT---TGTA------T--T-TAT---cttgacattcctgagtttggcagtgctttatataatgttgact
gi|3 : cA--TTTATTATATT-G---TAAAGAT--------G-TTTG-----------ACT---AA------AACAAA-ACACATG------T--T-CA------G-A-A--TC-AGATTACCT-G--TTTAACGA-AGAAAAT----GACTAAGATTGTTTGAT-A-TTATGGC--GGATGTGTAATAATT-AT-T-----GCAAACC------AGTCTGTT-Ttatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|30 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtTGGTGGTA------AAGC----CTGTCTCTCAAGTGGTGTGTTAACGGTTCGAT--CCC-------------cattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|31 : agTCTGGAGCAC--TGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAaatcgagtgataacaaatactttaca
gi|32 : aGCC--GTA---AA-TAATA---AATC-C-CAAACTGT----------ACAA--TAGTTTGTTG------------T--------G-TTAA-C--------TATTTA-AATACTGt
gi|33 : ATATA-AACA--A-GAAATATTCAG--CA-CAGCTACTT-TGCAAA--A-TAGATTT-AAAGA-ATTA
gi|34 : tcgACGACCTCA--TGTA-AGA-A----AC----AAATAAAATTGTTTGAT-A-TTGTGAC--GGTTGTGTAATAAT
gi|35 : GTGATCTAGGGATA------CTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAAT--C
gi|36 : TAAGGTAGTTTGAC-A-TTGTGAC--GGATGT---ACACTT-GA-T-----GCAAAC
gi|37 : GGTAGTTTGGT-A-TTGTGAC--GGATGTGAAAAAATT-AT-T-----GTAAACC-ttgtgc
gi|4 : tAAATGACAA---GACGGCAGTGTGGTCTAGTGGTA------GAAC--GTCTGTCTCGCATGCGGAAGGTCATGGGTTCAAT--CCCGATCGGGTTATACC---------------AAAGACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAAC-ACCAT---A-------CAACAACA--ACTT-A-AATG--ACAAAATATACAAACCA-CAACTCATA-TAAAAA-CA-T-
gi|5 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaTGAGACCGCAGCATGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT--CCT-------------CGGCCGGGTCAGACCAAA-GACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-AGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACAAC---AGCAGCAGCAGCAACAGCAATA-ATAACAGCA-GCAACA-GCAG--CAGCAGCttgctacacac
gi|6 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgattACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCACCTCGCATGCAGAAGGTCCTGGGTTCAAT--CCCTGG----------C---------------CG-GGTCATA---CC--AA-AGGTACTAGAAGCTTCCT-TGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAAC-ACCACTAAA-------CAACAACA--Aaacaacaac
gi|7 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgaccc---TAAA--TC-------G-TTTAACA-------TACGTATCAT-CAGCAACAAATATATATG------TGCT-TA------G-G-G--TCGAAAC--CCCCGTTTGTA-CGA-A----TT----GACTAGTGTAACTTGAT-A-TTGCGAC--GGATAGGTAGAGATT-ATATATGTAGTAAACCGG-TT-CGTCTATT-Tcaacaactgacccacaatgatcctgctggaca
gi|8 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatTGCC--ATA---AA-TAATT---AATT-C-CAAAC-GTTTGTTAACACACAA--TT---TGTTATCA---TAAAGTT--------G-TTTG-----------ACTTA-A-TGGAGCAACA------TATA------T--TCTAT---CCA-AAG--TCCAACTGCCTTTA--TGTA-TGA-A----ATACATGACTAAGGTGGTTTGAT-A-TTGTGAT--GGATGTGTAATAATTCAA-T-----GCAAACcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|9 : ACCTTG--TGTA-CGA-A----AC----AACTAAGGTAGTTTGAT-A-TTGTGAC--GGATATGTAATAtttgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT
Alignments
lowQualScore : 111 111111 9999999999999999999999999999999999999 1111111 2222222 1 1 1 44444444444 1111 1111 1111111111 11111111111 11111111111 44444444444444444444444 222 1
lowQualScore : 888 1 444444 888 5 2 7777777777777777777777777777777777777 3 5555555 6 66 0 1 1 8 8 6666666 0 0 0 0 0 11111111111 99 5 4 55 4 55 3 0 3 7777 3 1 4 4 4444 555 555 3 6666 3 3 3 6666666666 33 44 6666666 88888888888 2 88888888888 2 2 66 2 1 44 22222222222222222222222 1 2 1 33 2 2 6666 6666 0 4 2 2 33 2 8888888 888 4 5 3
lowQualScore : ... . ...... ... . . ..................................... . ....... . .. . . . . . ....... . . . . . ........... .. . . .. . .. . . . .... . . . . .... ... ... . .... . . . .......... .. .. ....... ........... . ........... . . .. . . .. ....................... . . . .. . . .... .... . . . . .. . ....... ... . . .
lowQualScore : 222 0 444444 222 4 2 2222222222222222222222222222222222222 3 2222222 7 00 7 4 0 0 0 0000000 8 0 0 2 0 00000000000 22 7 0 55 0 00 6 5 6 5555 6 4 0 0 3333 444 888 3 1111 1 1 1 5555555555 77 66 9999999 88888888888 4 33333333333 1 4 33 1 8 99 99999999999999999999999 0 1 6 99 9 9 1111 1111 5 4 2 2 22 9 7777777 111 0 0 3
consensus : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------T--T-TAT------G--GGTCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
Reference ( family-1772 ) : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------T--T-TAT---C--G--GGTCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
gi|1 : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTA------GAG--------------ATGCAGATATTCATTGGCCCGATATCCC-------------C---------------AATGAATGGA---AA--AAATGTTATTAGAAGCTTCCT-CGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAAC-ACCAT---A-------CAATAACA--AATA-A-AACA--A-G-AACCTGCAG--CA-CAGCTGCTT-TGACAA-GA-T-GATAT-AGAGA-ATTTCATTTAACTGCC--GTA---AA-TAATC---AATT-C-TAATC-CC----------CCAG--CTGCGTGTAGT-G---TAAA--T--------G-TTTA-C--------TACCTA-AATCCTGTAACAAATACACATACGTTTTT--T-TAT---T--AATGGTCGAAACGACCTCT--TATA-CGA-A----AG----GACTGAAATAGTTTG---A-TTGTGAC--GAATGTGTAATAATT-AC-A-----GCGAACCTG-TT-AGTTTGTT-GTATGTGATTTA
gi|10 : GCTGCTA-TGAAAA-TG-T-GATAC-AGA-------CCTTTAACTGGT--TTA---AA-TAATC---AATT-C-TAACT-GTT---------ACAA--TTGCTTGTTGT-G---TAAA--A--------G-TTAA-C--------TGTTTA-AATAC
gi|10 : TTGTTAT-G---T-----T--------G-TTTA-----------ACCTA-GAGTCATAAACAAA-----ATA------T--T----------------CGAAACGACCTCA--AGTA-CAA-A----AC----GACTAAGGTTTTTTGGT-G-TAGTGGC--GGGTGTATtttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaa--GTA---AA--AATTTGAAATTGC-TATAC-TT----------ACAACTTTATTTGTTTT-AATATAAA--T--------G-TGTT-T--------GACCTA-CAGTCAGCAACAAAT--ATATA------T--T-TTC---T--G--TATAGAAACAACCTTG--TGTA-TGA-A----AC----AA----------------A-TTGTGAT--GGATGTGCAATTATT-AT-A-----GCAAACC-A-TTCAGTCTGTT-TT-ca
gi|12 : agttgg-AACA--A-AATAAATACAG--CT-CAAC--------AAAA-G--T-GAGTG-GGGGA-ATAAGATTTAACAGCC--ATA---AAACAACT---AGTT-C-CAAAC-GT----------ACAA--CTAAGTGCTAT-A---TACA--G--------G-TCTA-T--------TATTTA-AAattaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|12 : --TTCTTTGTCAT-A---TAAA--T--------G-TG-A-C--------TA-TTA-G--TCGGAAACAAACACACATA------C--T-TGG---G--G--GATCTAAACTACGTTG--TGTA-TGA-A----AC----Gcattttattttcataatatttctttgtcatataaatgtgactattagtcggaaacaaacacacatacttgggggatctaaactacgttgtgtatgaaacg
gi|13 : aacaaaataaatacagctcaacaaaagtgagtgggggaataagatttaacagccataaaacaactagttccaaacgtacaactaagtgctatatacaggtctattatttaaacattttattttcataatat-A-AACA--C-GAAGCATGCAG--CA-AAGTTGCTT-TGAAAA-AAGT-GATTT-AGAGA-ATTGCTTTAAACTGTT--ATA---AA-TGATC---AATT-C-CAAAC-GT----------ACAA--TTGATTGTCCT-A---TAAA--G--------G-TTTA-TTTTCTCAATACTTA-AATTC
gi|14 : atACCTCGGTGT---CTAGTGGTATATGTTAAAC--GTCCATCTTGCATGCAGGGGTTTGTGTGTTT-AT------------------G---------------AA-GGGTTTATGCAAACAA-TTGT--TAGAAG---CCTATG-TTAACACT--GCATttgttatatatatataaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|15 : taacataaaagataatttgataatttgtatattttatctatctatataaaaaatatttttggttataaaattgtggttcctatcagaaccgtcCCGCAACAAATGCACATA------T--T-C-----C--C--GGTCGAAACGAGATCA--CGTA-CGA-A----GC----GACTAAGATACTTTG-T-A-Tc
gi|16 : gtattataatacaagttgtttggacagtggagtTC---AATT-CTCAAAA-GT----------G-----TTTATTGTTAT-A---TAAA--TAGGAAGTTG-TTTG-C--------CA--TA-GAGTCAGCAGCGACTACACATA------T--T-CA-------G--GATCGAAATTGCGTCG--TGTA-CGA-A----AC----GACTAgatactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|17 : aatataatttaaactgcattaatagtaagtttcaaaggtacacattctaattgtgtattattaaagattaacttttAACAAATACTCATA------A--T-TATAATC--AC-AGTTAAAACAACCTTA--TGTA--GATA----AC----AACTAAAATAGTTTGGT-A-TTGTGAC--GGATGTGTAATAGTT-AT-A-----GCAAACCAG-TT-GGTCTGTT-TTCTGTTcag
gi|18 : TTCGTT-A-TTATGAC--GAATGTGCAATAATT-AT-T-----GCAAATC-GTTT-CGTCTCTC-TC-TGttattatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|19 : agtaaatcagtaacatgcgaCTACAACAAGTACACATA------G--T-CAT------G--GAT-GATATGACCATG--TGTG-TGA-A----AT----GACTATGATTGTTTAAT-A-TT-TGAT--GGATACGCATTCATT-AT-ccagacgttgtttttttaggcgcgtgcgtctatcgatacagattaacttctcttcacatctccgacacctgtttttcataaagttatcatagaatatgatca
gi|2 : gaAA--CA-CAGCTTATT-TGAAAA-TT-T-TAAATTGGAGA-ATAATATTTAACTGCC--ATA---AA-TGATA---AATT-C-CAAAC-GT----------ACAA--TTGATTGTTAT-G---TTTA--G--------G-TTTA-C--------TATTTA-AATACaagtcacttctcattaactattttcatgaatgcacattcagagatacatgctgtaaatcataatcttgaatatcaagtacatt
gi|2 : tataattT-A---TAAAGTT--------G-TTTG-----------ACCTA-AAGTCAGCAACAAATACAAATA------T--T-CA-------A--GGTCAAAACGACCTTG--TGCA-CAA-A----AC----GACTAAGGTAGTTGGAT-A-TTGTGAC--GGATGTGTAATGATT-AT-T-----G-AAATT-GATT-AGCCTGCT-GT-TGTTGTTTtaaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|20 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacaaCA--AATA-A-TATA--C-GAAACATGCAG--CG-TAA--GTTTCTGAAAA-GT-T-GATAT-AAAGATATG-CGTTTAACTGCA--GTT---AA-TAATC---GATT-C-CAAGC-GT----------G-AA--CTACTTGATGA-G---TAAA--T--------A-TCTA-C--------TGTTTA-AGTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgAAAAACA----TG-A-AACA--A-TGCATATGCAG--CA-TAACTGCTT-TGGAAA-AA-T-GATAC-ATGGA-ATTA-GGTTAACTGCT--TTATTGAA-TA------AATT-C-CAAAC-AT----------ACAA--CCATTTGTT-T-G---T-AA--T--------ACTCTA-C--------AACTAA-AAT
gi|23 : TTCAT-A-TTGTAAC--GGAAGTGCAATTAAC-AT-C-----GCAAATC-GATT-AAACTGTCATC-TGTTatttattcaatttaaa
gi|24 : actgaattaGGTA------GAGC--ATT-GTCTCGTACGCAGGAGGTATTGGGTTCGAT----------------------------------------TTGG---TA--AA-TAATATTAATAACTTCCT-GACATGCCACTCAGTACTTAGTGGAATGTTCtaattagacgttttcatgtttgttcgtcttacgatgtttaataacatctaa
gi|25 : TGAGGTATTTTG-T-AGTTCTGACTGGGA-GTGCAATACAC-AT-T-----GCAAACCTG-TT-aacttgtatttgac
gi|26 : actaagaacaatacaGATGA-TTGTAAC--AGATATGCAATAATT-AT-T-----GCAAACC------AGTTTGtatttcattagacgttttcaaatgaatgcatcgtacgata
gi|27 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgag-AACA--A-CAAACCTGCTG--CA-GGGCTGCTT-T-AAAA-G--T-GATTT-AGAGA-GTAAGGTTTAACT--C--GTA---AA-TAATT---GGTT-C-CAAAT-GG----------GCAG--TTG
gi|29 : -TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACT
gi|3 : -AGCA--A-GAAACCTGGAG--CA-CATATGGAT-TGAAGACGA-A-GATAC-AAAGA-AT-ACATTTAACTGACAAATA---TG-TAATC---AGTC-T-CAAAC-AT----------GCAT--CTGCTTGT--G-G---CAAA--G--------G-TTTA-C--------TAGCTA-AATACTG-A--AAAT---TGTA------T--T-TAT---cttgacattcctgagtttggcagtgctttatataatgttgact
gi|3 : cA--TTTATTATATT-G---TAAAGAT--------G-TTTG-----------ACT---AA------AACAAA-ACACATG------T--T-CA-------G--AATC-AGATTACCT-G--TTTAACGA-AGAAAAT----GACTAAGATTGTTTGAT-A-TTATGGC--GGATGTGTAATAATT-AT-T-----GCAAACC------AGTCTGTT-Ttatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|30 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtTGGTGGTA------AAGC----CTGTCTCTCAAGTGGTGTGTTAACGGTTCGAT--CCC-------------cattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|31 : agTCTGGAGCAC--TGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAaatcgagtgataacaaatactttaca
gi|32 : aGCC--GTA---AA-TAATA---AATC-C-CAAACTGT----------ACAA--TAGTTTGTTG------------T--------G-TTAA-C--------TATTTA-AATACTGt
gi|33 : ATATA-AACA--A-GAAATATTCAG--CA-CAGCTACTT-TGCAAA--A-TAGATTT-AAAGA-ATTA
gi|34 : tcgACGACCTCA--TGTA-AGA-A----AC----AAATAAAATTGTTTGAT-A-TTGTGAC--GGTTGTGTAATAAT
gi|35 : GTGATCTAGGGATA------CTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAAT--C
gi|36 : TAAGGTAGTTTGAC-A-TTGTGAC--GGATGT---ACACTT-GA-T-----GCAAAC
gi|37 : GGTAGTTTGGT-A-TTGTGAC--GGATGTGAAAAAATT-AT-T-----GTAAACC-ttgtgc
gi|4 : tAAATGACAA---GACGGCAGTGTGGTCTAGTGGTA------GAAC--GTCTGTCTCGCATGCGGAAGGTCATGGGTTCAAT--CCCGATCGGGTTATACC---------------AAAGACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAAC-ACCAT---A-------CAACAACA--ACTT-A-AATG--ACAAAATATACAAACCA-CAACTCATA-TAAAAA-CA-T-
gi|5 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaTGAGACCGCAGCATGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT--CCT-------------CGGCCGGGTCAGACCAAA-GACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-AGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACAAC---AGCAGCAGCAGCAACAGCAATA-ATAACAGCA-GCAACA-GCAG--CAGCAGCttgctacacac
gi|6 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgattACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCACCTCGCATGCAGAAGGTCCTGGGTTCAAT--CCCTGG----------C---------------CG-GGTCATA---CC--AA-AGGTACTAGAAGCTTCCT-TGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAAC-ACCACTAAA-------CAACAACA--Aaacaacaac
gi|7 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgaccc---TAAA--TC-------G-TTTAACA-------TACGTATCAT-CAGCAACAAATATATATG------TGCT-TA-------G--GGTCGAAAC--CCCCGTTTGTA-CGA-A----TT----GACTAGTGTAACTTGAT-A-TTGCGAC--GGATAGGTAGAGATT-ATATATGTAGTAAACCGG-TT-CGTCTATT-Tcaacaactgacccacaatgatcctgctggaca
gi|8 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatTGCC--ATA---AA-TAATT---AATT-C-CAAAC-GTTTGTTAACACACAA--TT---TGTTATCA---TAAAGTT--------G-TTTG-----------ACTTA-A-TGGAGCAACA------TATA------T--TCTAT---CCAA--AGTCCAACTGCCTTTA--TGTA-TGA-A----ATACATGACTAAGGTGGTTTGAT-A-TTGTGAT--GGATGTGTAATAATTCAA-T-----GCAAACcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|9 : ACCTTG--TGTA-CGA-A----AC----AACTAAGGTAGTTTGAT-A-TTGTGAC--GGATATGTAATAtttgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT
Alignments
lowQualScore : 111 111111 9999999999999999999999999999999999999 1111111 2222222 1 1 1 44444444444 1111 1111 1111111111 11111111111 11111111111 3333333333333333333333333 222 1
lowQualScore : 888 1 444444 888 5 2 7777777777777777777777777777777777777 3 5555555 6 66 0 1 1 8 8 6666666 0 0 0 0 0 11111111111 99 5 4 55 4 55 3 0 3 7777 3 1 4 4 4444 555 555 3 6666 3 3 3 6666666666 33 44 6666666 88888888888 2 88888888888 2 2 66 2 1 0000000000000000000000000 1 2 1 33 2 2 6666 6666 0 4 2 2 33 2 8888888 888 4 5 3
lowQualScore : ... . ...... ... . . ..................................... . ....... . .. . . . . . ....... . . . . . ........... .. . . .. . .. . . . .... . . . . .... ... ... . .... . . . .......... .. .. ....... ........... . ........... . . .. . . ......................... . . . .. . . .... .... . . . . .. . ....... ... . . .
lowQualScore : 222 0 444444 222 4 2 2222222222222222222222222222222222222 3 2222222 7 00 7 4 0 0 0 0000000 8 0 0 2 0 00000000000 22 7 0 55 0 00 6 5 6 5555 6 4 0 0 3333 444 888 3 1111 1 1 1 5555555555 77 66 9999999 88888888888 4 33333333333 1 4 33 1 8 3333333333333333333333333 0 1 6 99 9 9 1111 1111 5 4 2 2 22 9 7777777 111 0 0 3
consensus : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------T--TCAT---GG-----G-TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
Reference ( family-1772 ) : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------T--TTAT---GG-----G-TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
gi|1 : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTA------GAG--------------ATGCAGATATTCATTGGCCCGATATCCC-------------C---------------AATGAATGGA---AA--AAATGTTATTAGAAGCTTCCT-CGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAAC-ACCAT---A-------CAATAACA--AATA-A-AACA--A-G-AACCTGCAG--CA-CAGCTGCTT-TGACAA-GA-T-GATAT-AGAGA-ATTTCATTTAACTGCC--GTA---AA-TAATC---AATT-C-TAATC-CC----------CCAG--CTGCGTGTAGT-G---TAAA--T--------G-TTTA-C--------TACCTA-AATCCTGTAACAAATACACATACGTTTTT--TTATTAATG-----G-TCGAAACGACCTCT--TATA-CGA-A----AG----GACTGAAATAGTTTG---A-TTGTGAC--GAATGTGTAATAATT-AC-A-----GCGAACCTG-TT-AGTTTGTT-GTATGTGATTTA
gi|10 : GCTGCTA-TGAAAA-TG-T-GATAC-AGA-------CCTTTAACTGGT--TTA---AA-TAATC---AATT-C-TAACT-GTT---------ACAA--TTGCTTGTTGT-G---TAAA--A--------G-TTAA-C--------TGTTTA-AATAC
gi|10 : TTGTTAT-G---T-----T--------G-TTTA-----------ACCTA-GAGTCATAAACAAA-----ATA------T--T----------------CGAAACGACCTCA--AGTA-CAA-A----AC----GACTAAGGTTTTTTGGT-G-TAGTGGC--GGGTGTATtttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaa--GTA---AA--AATTTGAAATTGC-TATAC-TT----------ACAACTTTATTTGTTTT-AATATAAA--T--------G-TGTT-T--------GACCTA-CAGTCAGCAACAAATATATAT-------T--TTCT---GT-----A-TAGAAACAACCTTG--TGTA-TGA-A----AC----AA----------------A-TTGTGAT--GGATGTGCAATTATT-AT-A-----GCAAACC-A-TTCAGTCTGTT-TT-ca
gi|12 : agttgg-AACA--A-AATAAATACAG--CT-CAAC--------AAAA-G--T-GAGTG-GGGGA-ATAAGATTTAACAGCC--ATA---AAACAACT---AGTT-C-CAAAC-GT----------ACAA--CTAAGTGCTAT-A---TACA--G--------G-TCTA-T--------TATTTA-AAattaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|12 : --TTCTTTGTCAT-A---TAAA--T--------G-TG-A-C--------TA-TTA-G--TCGGAAACAAACACACATA------C--TTGG---GG-----GATCTAAACTACGTTG--TGTA-TGA-A----AC----Gcattttattttcataatatttctttgtcatataaatgtgactattagtcggaaacaaacacacatacttgggggatctaaactacgttgtgtatgaaacg
gi|13 : aacaaaataaatacagctcaacaaaagtgagtgggggaataagatttaacagccataaaacaactagttccaaacgtacaactaagtgctatatacaggtctattatttaaacattttattttcataatat-A-AACA--C-GAAGCATGCAG--CA-AAGTTGCTT-TGAAAA-AAGT-GATTT-AGAGA-ATTGCTTTAAACTGTT--ATA---AA-TGATC---AATT-C-CAAAC-GT----------ACAA--TTGATTGTCCT-A---TAAA--G--------G-TTTA-TTTTCTCAATACTTA-AATTC
gi|14 : atACCTCGGTGT---CTAGTGGTATATGTTAAAC--GTCCATCTTGCATGCAGGGGTTTGTGTGTTT-AT------------------G---------------AA-GGGTTTATGCAAACAA-TTGT--TAGAAG---CCTATG-TTAACACT--GCATttgttatatatatataaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|15 : taacataaaagataatttgataatttgtatattttatctatctatataaaaaatatttttggttataaaattgtggttcctatcagaaccgtcCCGCAACAAATGCACATA------T--TCCC---GG-------TCGAAACGAGATCA--CGTA-CGA-A----GC----GACTAAGATACTTTG-T-A-Tc
gi|16 : gtattataatacaagttgtttggacagtggagtTC---AATT-CTCAAAA-GT----------G-----TTTATTGTTAT-A---TAAA--TAGGAAGTTG-TTTG-C--------CA--TA-GAGTCAGCAGCGACTACACATA------T--TCA----GG-----A-TCGAAATTGCGTCG--TGTA-CGA-A----AC----GACTAgatactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|17 : aatataatttaaactgcattaatagtaagtttcaaaggtacacattctaattgtgtattattaaagattaacttttAACAAATACTCATA------A--TTAT---AATCACAG-TTAAAACAACCTTA--TGTA--GATA----AC----AACTAAAATAGTTTGGT-A-TTGTGAC--GGATGTGTAATAGTT-AT-A-----GCAAACCAG-TT-GGTCTGTT-TTCTGTTcag
gi|18 : TTCGTT-A-TTATGAC--GAATGTGCAATAATT-AT-T-----GCAAATC-GTTT-CGTCTCTC-TC-TGttattatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|19 : agtaaatcagtaacatgcgaCTACAACAAGTACACATA------G--TCAT---GG-----A-T-GATATGACCATG--TGTG-TGA-A----AT----GACTATGATTGTTTAAT-A-TT-TGAT--GGATACGCATTCATT-AT-ccagacgttgtttttttaggcgcgtgcgtctatcgatacagattaacttctcttcacatctccgacacctgtttttcataaagttatcatagaatatgatca
gi|2 : gaAA--CA-CAGCTTATT-TGAAAA-TT-T-TAAATTGGAGA-ATAATATTTAACTGCC--ATA---AA-TGATA---AATT-C-CAAAC-GT----------ACAA--TTGATTGTTAT-G---TTTA--G--------G-TTTA-C--------TATTTA-AATACaagtcacttctcattaactattttcatgaatgcacattcagagatacatgctgtaaatcataatcttgaatatcaagtacatt
gi|2 : tataattT-A---TAAAGTT--------G-TTTG-----------ACCTA-AAGTCAGCAACAAATACAAATA------T--TCA----AG-----G-TCAAAACGACCTTG--TGCA-CAA-A----AC----GACTAAGGTAGTTGGAT-A-TTGTGAC--GGATGTGTAATGATT-AT-T-----G-AAATT-GATT-AGCCTGCT-GT-TGTTGTTTtaaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|20 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacaaCA--AATA-A-TATA--C-GAAACATGCAG--CG-TAA--GTTTCTGAAAA-GT-T-GATAT-AAAGATATG-CGTTTAACTGCA--GTT---AA-TAATC---GATT-C-CAAGC-GT----------G-AA--CTACTTGATGA-G---TAAA--T--------A-TCTA-C--------TGTTTA-AGTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgAAAAACA----TG-A-AACA--A-TGCATATGCAG--CA-TAACTGCTT-TGGAAA-AA-T-GATAC-ATGGA-ATTA-GGTTAACTGCT--TTATTGAA-TA------AATT-C-CAAAC-AT----------ACAA--CCATTTGTT-T-G---T-AA--T--------ACTCTA-C--------AACTAA-AAT
gi|23 : TTCAT-A-TTGTAAC--GGAAGTGCAATTAAC-AT-C-----GCAAATC-GATT-AAACTGTCATC-TGTTatttattcaatttaaa
gi|24 : actgaattaGGTA------GAGC--ATT-GTCTCGTACGCAGGAGGTATTGGGTTCGAT----------------------------------------TTGG---TA--AA-TAATATTAATAACTTCCT-GACATGCCACTCAGTACTTAGTGGAATGTTCtaattagacgttttcatgtttgttcgtcttacgatgtttaataacatctaa
gi|25 : TGAGGTATTTTG-T-AGTTCTGACTGGGA-GTGCAATACAC-AT-T-----GCAAACCTG-TT-aacttgtatttgac
gi|26 : actaagaacaatacaGATGA-TTGTAAC--AGATATGCAATAATT-AT-T-----GCAAACC------AGTTTGtatttcattagacgttttcaaatgaatgcatcgtacgata
gi|27 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgag-AACA--A-CAAACCTGCTG--CA-GGGCTGCTT-T-AAAA-G--T-GATTT-AGAGA-GTAAGGTTTAACT--C--GTA---AA-TAATT---GGTT-C-CAAAT-GG----------GCAG--TTG
gi|29 : -TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACT
gi|3 : -AGCA--A-GAAACCTGGAG--CA-CATATGGAT-TGAAGACGA-A-GATAC-AAAGA-AT-ACATTTAACTGACAAATA---TG-TAATC---AGTC-T-CAAAC-AT----------GCAT--CTGCTTGT--G-G---CAAA--G--------G-TTTA-C--------TAGCTA-AATACTG-A--AAAT---TGTA------T--TTAT---cttgacattcctgagtttggcagtgctttatataatgttgact
gi|3 : cA--TTTATTATATT-G---TAAAGAT--------G-TTTG-----------ACT---AA------AACAAA-ACACATG------T--TCA----GA-----A-TC-AGATTACCT-G--TTTAACGA-AGAAAAT----GACTAAGATTGTTTGAT-A-TTATGGC--GGATGTGTAATAATT-AT-T-----GCAAACC------AGTCTGTT-Ttatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|30 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtTGGTGGTA------AAGC----CTGTCTCTCAAGTGGTGTGTTAACGGTTCGAT--CCC-------------cattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|31 : agTCTGGAGCAC--TGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAaatcgagtgataacaaatactttaca
gi|32 : aGCC--GTA---AA-TAATA---AATC-C-CAAACTGT----------ACAA--TAGTTTGTTG------------T--------G-TTAA-C--------TATTTA-AATACTGt
gi|33 : ATATA-AACA--A-GAAATATTCAG--CA-CAGCTACTT-TGCAAA--A-TAGATTT-AAAGA-ATTA
gi|34 : tcgACGACCTCA--TGTA-AGA-A----AC----AAATAAAATTGTTTGAT-A-TTGTGAC--GGTTGTGTAATAAT
gi|35 : GTGATCTAGGGATA------CTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAAT--C
gi|36 : TAAGGTAGTTTGAC-A-TTGTGAC--GGATGT---ACACTT-GA-T-----GCAAAC
gi|37 : GGTAGTTTGGT-A-TTGTGAC--GGATGTGAAAAAATT-AT-T-----GTAAACC-ttgtgc
gi|4 : tAAATGACAA---GACGGCAGTGTGGTCTAGTGGTA------GAAC--GTCTGTCTCGCATGCGGAAGGTCATGGGTTCAAT--CCCGATCGGGTTATACC---------------AAAGACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAAC-ACCAT---A-------CAACAACA--ACTT-A-AATG--ACAAAATATACAAACCA-CAACTCATA-TAAAAA-CA-T-
gi|5 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaTGAGACCGCAGCATGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT--CCT-------------CGGCCGGGTCAGACCAAA-GACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-AGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACAAC---AGCAGCAGCAGCAACAGCAATA-ATAACAGCA-GCAACA-GCAG--CAGCAGCttgctacacac
gi|6 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgattACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCACCTCGCATGCAGAAGGTCCTGGGTTCAAT--CCCTGG----------C---------------CG-GGTCATA---CC--AA-AGGTACTAGAAGCTTCCT-TGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAAC-ACCACTAAA-------CAACAACA--Aaacaacaac
gi|7 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgaccc---TAAA--TC-------G-TTTAACA-------TACGTATCAT-CAGCAACAAATATATATG------TGCTTA----GG-----G-TCGAAAC--CCCCGTTTGTA-CGA-A----TT----GACTAGTGTAACTTGAT-A-TTGCGAC--GGATAGGTAGAGATT-ATATATGTAGTAAACCGG-TT-CGTCTATT-Tcaacaactgacccacaatgatcctgctggaca
gi|8 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatTGCC--ATA---AA-TAATT---AATT-C-CAAAC-GTTTGTTAACACACAA--TT---TGTTATCA---TAAAGTT--------G-TTTG-----------ACTTA-A-TGGAGCAACATATATTC-TA------T--CCA----AA-----G-TCCAACTGCCTTTA--TGTA-TGA-A----ATACATGACTAAGGTGGTTTGAT-A-TTGTGAT--GGATGTGTAATAATTCAA-T-----GCAAACcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|9 : ACCTTG--TGTA-CGA-A----AC----AACTAAGGTAGTTTGAT-A-TTGTGAC--GGATATGTAATAtttgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT
Alignments
lowQualScore : 111 111111 9999999999999999999999999999999999999 1111111 2222222 1 1 1 44444444444 1111 1111 1111111111 11111111111 11111111111 33333333333333 222 1
lowQualScore : 888 1 444444 888 5 2 7777777777777777777777777777777777777 3 5555555 6 66 0 1 1 8 8 6666666 0 0 0 0 0 11111111111 99 5 4 55 4 55 3 0 3 7777 3 1 4 4 4444 555 555 3 6666 3 3 3 6666666666 33 44 6666666 88888888888 2 88888888888 2 2 66 2 0 999999 55555555555555 1 2 1 33 2 2 6666 6666 0 4 2 2 33 2 8888888 888 4 5 3
lowQualScore : ... . ...... ... . . ..................................... . ....... . .. . . . . . ....... . . . . . ........... .. . . .. . .. . . . .... . . . . .... ... ... . .... . . . .......... .. .. ....... ........... . ........... . . .. . . ...... .............. . . . .. . . .... .... . . . . .. . ....... ... . . .
lowQualScore : 222 0 444444 222 4 2 2222222222222222222222222222222222222 3 2222222 7 00 7 4 0 0 0 0000000 8 0 0 2 0 00000000000 22 7 0 55 0 00 6 5 6 5555 6 4 0 0 3333 444 888 3 1111 1 1 1 5555555555 77 66 9999999 88888888888 4 33333333333 1 4 33 1 4 666666 99999999999999 0 1 6 99 9 9 1111 1111 5 4 2 2 22 9 7777777 111 0 0 3
consensus : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------TTCAT---GG-----G-TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
Reference ( family-1772 ) : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------TTCAT---GG-----G-TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
gi|1 : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTA------GAG--------------ATGCAGATATTCATTGGCCCGATATCCC-------------C---------------AATGAATGGA---AA--AAATGTTATTAGAAGCTTCCT-CGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAAC-ACCAT---A-------CAATAACA--AATA-A-AACA--A-G-AACCTGCAG--CA-CAGCTGCTT-TGACAA-GA-T-GATAT-AGAGA-ATTTCATTTAACTGCC--GTA---AA-TAATC---AATT-C-TAATC-CC----------CCAG--CTGCGTGTAGT-G---TAAA--T--------G-TTTA-C--------TACCTA-AATCCTGTAACAAATACACATACGTTTTTTTATTAATG-----G-TCGAAACGACCTCT--TATA-CGA-A----AG----GACTGAAATAGTTTG---A-TTGTGAC--GAATGTGTAATAATT-AC-A-----GCGAACCTG-TT-AGTTTGTT-GTATGTGATTTA
gi|10 : GCTGCTA-TGAAAA-TG-T-GATAC-AGA-------CCTTTAACTGGT--TTA---AA-TAATC---AATT-C-TAACT-GTT---------ACAA--TTGCTTGTTGT-G---TAAA--A--------G-TTAA-C--------TGTTTA-AATAC
gi|10 : TTGTTAT-G---T-----T--------G-TTTA-----------ACCTA-GAGTCATAAACAAA-----ATA------TTC----------------GAAACGACCTCA--AGTA-CAA-A----AC----GACTAAGGTTTTTTGGT-G-TAGTGGC--GGGTGTATtttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaa--GTA---AA--AATTTGAAATTGC-TATAC-TT----------ACAACTTTATTTGTTTT-AATATAAA--T--------G-TGTT-T--------GACCTA-CAGTCAGCAACAAATATATATT------TTC-T---GT-----A-TAGAAACAACCTTG--TGTA-TGA-A----AC----AA----------------A-TTGTGAT--GGATGTGCAATTATT-AT-A-----GCAAACC-A-TTCAGTCTGTT-TT-ca
gi|12 : agttgg-AACA--A-AATAAATACAG--CT-CAAC--------AAAA-G--T-GAGTG-GGGGA-ATAAGATTTAACAGCC--ATA---AAACAACT---AGTT-C-CAAAC-GT----------ACAA--CTAAGTGCTAT-A---TACA--G--------G-TCTA-T--------TATTTA-AAattaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|12 : --TTCTTTGTCAT-A---TAAA--T--------G-TG-A-C--------TA-TTA-G--TCGGAAACAAACACACATA------CTTGG---GG-----GATCTAAACTACGTTG--TGTA-TGA-A----AC----Gcattttattttcataatatttctttgtcatataaatgtgactattagtcggaaacaaacacacatacttgggggatctaaactacgttgtgtatgaaacg
gi|13 : aacaaaataaatacagctcaacaaaagtgagtgggggaataagatttaacagccataaaacaactagttccaaacgtacaactaagtgctatatacaggtctattatttaaacattttattttcataatat-A-AACA--C-GAAGCATGCAG--CA-AAGTTGCTT-TGAAAA-AAGT-GATTT-AGAGA-ATTGCTTTAAACTGTT--ATA---AA-TGATC---AATT-C-CAAAC-GT----------ACAA--TTGATTGTCCT-A---TAAA--G--------G-TTTA-TTTTCTCAATACTTA-AATTC
gi|14 : atACCTCGGTGT---CTAGTGGTATATGTTAAAC--GTCCATCTTGCATGCAGGGGTTTGTGTGTTT-AT------------------G---------------AA-GGGTTTATGCAAACAA-TTGT--TAGAAG---CCTATG-TTAACACT--GCATttgttatatatatataaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|15 : taacataaaagataatttgataatttgtatattttatctatctatataaaaaatatttttggttataaaattgtggttcctatcagaaccgtcCCGCAACAAATGCACATA------TTCCC---GG-------TCGAAACGAGATCA--CGTA-CGA-A----GC----GACTAAGATACTTTG-T-A-Tc
gi|16 : gtattataatacaagttgtttggacagtggagtTC---AATT-CTCAAAA-GT----------G-----TTTATTGTTAT-A---TAAA--TAGGAAGTTG-TTTG-C--------CA--TA-GAGTCAGCAGCGACTACACATA------TTCA----GG-----A-TCGAAATTGCGTCG--TGTA-CGA-A----AC----GACTAgatactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|17 : aatataatttaaactgcattaatagtaagtttcaaaggtacacattctaattgtgtattattaaagattaacttttAACAAATACTCATA------ATTAT---AATCACAG-TTAAAACAACCTTA--TGTA--GATA----AC----AACTAAAATAGTTTGGT-A-TTGTGAC--GGATGTGTAATAGTT-AT-A-----GCAAACCAG-TT-GGTCTGTT-TTCTGTTcag
gi|18 : TTCGTT-A-TTATGAC--GAATGTGCAATAATT-AT-T-----GCAAATC-GTTT-CGTCTCTC-TC-TGttattatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|19 : agtaaatcagtaacatgcgaCTACAACAAGTACACATA------GTCAT---GG-----A-T-GATATGACCATG--TGTG-TGA-A----AT----GACTATGATTGTTTAAT-A-TT-TGAT--GGATACGCATTCATT-AT-ccagacgttgtttttttaggcgcgtgcgtctatcgatacagattaacttctcttcacatctccgacacctgtttttcataaagttatcatagaatatgatca
gi|2 : gaAA--CA-CAGCTTATT-TGAAAA-TT-T-TAAATTGGAGA-ATAATATTTAACTGCC--ATA---AA-TGATA---AATT-C-CAAAC-GT----------ACAA--TTGATTGTTAT-G---TTTA--G--------G-TTTA-C--------TATTTA-AATACaagtcacttctcattaactattttcatgaatgcacattcagagatacatgctgtaaatcataatcttgaatatcaagtacatt
gi|2 : tataattT-A---TAAAGTT--------G-TTTG-----------ACCTA-AAGTCAGCAACAAATACAAATA------TTCA----AG-----G-TCAAAACGACCTTG--TGCA-CAA-A----AC----GACTAAGGTAGTTGGAT-A-TTGTGAC--GGATGTGTAATGATT-AT-T-----G-AAATT-GATT-AGCCTGCT-GT-TGTTGTTTtaaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|20 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacaaCA--AATA-A-TATA--C-GAAACATGCAG--CG-TAA--GTTTCTGAAAA-GT-T-GATAT-AAAGATATG-CGTTTAACTGCA--GTT---AA-TAATC---GATT-C-CAAGC-GT----------G-AA--CTACTTGATGA-G---TAAA--T--------A-TCTA-C--------TGTTTA-AGTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgAAAAACA----TG-A-AACA--A-TGCATATGCAG--CA-TAACTGCTT-TGGAAA-AA-T-GATAC-ATGGA-ATTA-GGTTAACTGCT--TTATTGAA-TA------AATT-C-CAAAC-AT----------ACAA--CCATTTGTT-T-G---T-AA--T--------ACTCTA-C--------AACTAA-AAT
gi|23 : TTCAT-A-TTGTAAC--GGAAGTGCAATTAAC-AT-C-----GCAAATC-GATT-AAACTGTCATC-TGTTatttattcaatttaaa
gi|24 : actgaattaGGTA------GAGC--ATT-GTCTCGTACGCAGGAGGTATTGGGTTCGAT----------------------------------------TTGG---TA--AA-TAATATTAATAACTTCCT-GACATGCCACTCAGTACTTAGTGGAATGTTCtaattagacgttttcatgtttgttcgtcttacgatgtttaataacatctaa
gi|25 : TGAGGTATTTTG-T-AGTTCTGACTGGGA-GTGCAATACAC-AT-T-----GCAAACCTG-TT-aacttgtatttgac
gi|26 : actaagaacaatacaGATGA-TTGTAAC--AGATATGCAATAATT-AT-T-----GCAAACC------AGTTTGtatttcattagacgttttcaaatgaatgcatcgtacgata
gi|27 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgag-AACA--A-CAAACCTGCTG--CA-GGGCTGCTT-T-AAAA-G--T-GATTT-AGAGA-GTAAGGTTTAACT--C--GTA---AA-TAATT---GGTT-C-CAAAT-GG----------GCAG--TTG
gi|29 : -TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACT
gi|3 : -AGCA--A-GAAACCTGGAG--CA-CATATGGAT-TGAAGACGA-A-GATAC-AAAGA-AT-ACATTTAACTGACAAATA---TG-TAATC---AGTC-T-CAAAC-AT----------GCAT--CTGCTTGT--G-G---CAAA--G--------G-TTTA-C--------TAGCTA-AATACTGAAActtgacattcctgagtttggcagtgctttatataatgttgact
gi|3 : cA--TTTATTATATT-G---TAAAGAT--------G-TTTG-----------ACT---AA------AACAAA-ACACATG------TTCA----GA-----A-TC-AGATTACCT-G--TTTAACGA-AGAAAAT----GACTAAGATTGTTTGAT-A-TTATGGC--GGATGTGTAATAATT-AT-T-----GCAAACC------AGTCTGTT-Tattgtatttattatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|30 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtTGGTGGTA------AAGC----CTGTCTCTCAAGTGGTGTGTTAACGGTTCGAT--CCC-------------cattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|31 : agTCTGGAGCAC--TGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAaatcgagtgataacaaatactttaca
gi|32 : aGCC--GTA---AA-TAATA---AATC-C-CAAACTGT----------ACAA--TAGTTTGTTG------------T--------G-TTAA-C--------TATTTA-AATACTGt
gi|33 : ATATA-AACA--A-GAAATATTCAG--CA-CAGCTACTT-TGCAAA--A-TAGATTT-AAAGA-ATTA
gi|34 : tcgACGACCTCA--TGTA-AGA-A----AC----AAATAAAATTGTTTGAT-A-TTGTGAC--GGTTGTGTAATAAT
gi|35 : GTGATCTAGGGATA------CTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAAT--C
gi|36 : TAAGGTAGTTTGAC-A-TTGTGAC--GGATGT---ACACTT-GA-T-----GCAAAC
gi|37 : GGTAGTTTGGT-A-TTGTGAC--GGATGTGAAAAAATT-AT-T-----GTAAACC-ttgtgc
gi|4 : tAAATGACAA---GACGGCAGTGTGGTCTAGTGGTA------GAAC--GTCTGTCTCGCATGCGGAAGGTCATGGGTTCAAT--CCCGATCGGGTTATACC---------------AAAGACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAAC-ACCAT---A-------CAACAACA--ACTT-A-AATG--ACAAAATATACAAACCA-CAACTCATA-TAAAAA-CA-T-
gi|5 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaTGAGACCGCAGCATGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT--CCT-------------CGGCCGGGTCAGACCAAA-GACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-AGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACAAC---AGCAGCAGCAGCAACAGCAATA-ATAACAGCA-GCAACA-GCAG--CAGCAGCttgctacacac
gi|6 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgattACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCACCTCGCATGCAGAAGGTCCTGGGTTCAAT--CCCTGG----------C---------------CG-GGTCATA---CC--AA-AGGTACTAGAAGCTTCCT-TGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAAC-ACCACTAAA-------CAACAACA--Aaacaacaac
gi|7 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgaccc---TAAA--TC-------G-TTTAACA-------TACGTATCAT-CAGCAACAAATATATATG------TGCTTA--GG-----G-TCGAAAC--CCCCGTTTGTA-CGA-A----TT----GACTAGTGTAACTTGAT-A-TTGCGAC--GGATAGGTAGAGATT-ATATATGTAGTAAACCGG-TT-CGTCTATT-Tcaacaactgacccacaatgatcctgctggaca
gi|8 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatTGCC--ATA---AA-TAATT---AATT-C-CAAAC-GTTTGTTAACACACAA--TT---TGTTATCA---TAAAGTT--------G-TTTG-----------ACTTA-A-TGGAGCAACATATATTC-TA------TCCA----AA-----G-TCCAACTGCCTTTA--TGTA-TGA-A----ATACATGACTAAGGTGGTTTGAT-A-TTGTGAT--GGATGTGTAATAATTCAA-T-----GCAAACcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|9 : ACCTTG--TGTA-CGA-A----AC----AACTAAGGTAGTTTGAT-A-TTGTGAC--GGATATGTAATAtttgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT
Alignments
lowQualScore : 111 111111 9999999999999999999999999999999999999 1111111 2222222 1 1 1 44444444444 1111 1111 1111111111 11111111111 11111111111 33333333333333 222 1
lowQualScore : 888 1 444444 888 5 2 7777777777777777777777777777777777777 3 5555555 6 66 0 1 1 8 8 6666666 0 0 0 0 0 11111111111 99 5 4 55 4 55 3 0 3 7777 3 1 4 4 4444 555 555 3 6666 3 3 3 6666666666 33 44 6666666 88888888888 2 88888888888 2 2 66 2 0 999999 55555555555555 1 2 1 33 2 2 6666 6666 0 4 2 2 33 2 8888888 888 4 5 3
lowQualScore : ... . ...... ... . . ..................................... . ....... . .. . . . . . ....... . . . . . ........... .. . . .. . .. . . . .... . . . . .... ... ... . .... . . . .......... .. .. ....... ........... . ........... . . .. . . ...... .............. . . . .. . . .... .... . . . . .. . ....... ... . . .
lowQualScore : 222 0 444444 222 4 2 2222222222222222222222222222222222222 3 2222222 7 00 7 4 0 0 0 0000000 8 0 0 2 0 00000000000 22 7 0 55 0 00 6 5 6 5555 6 4 0 0 3333 444 888 3 1111 1 1 1 5555555555 77 66 9999999 88888888888 4 33333333333 1 4 33 1 4 666666 99999999999999 0 1 6 99 9 9 1111 1111 5 4 2 2 22 9 7777777 111 0 0 3
consensus : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------TTCAT---GG-----G-TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
Reference ( family-1772 ) : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------TTCAT---GG-----G-TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
gi|1 : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTA------GAG--------------ATGCAGATATTCATTGGCCCGATATCCC-------------C---------------AATGAATGGA---AA--AAATGTTATTAGAAGCTTCCT-CGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAAC-ACCAT---A-------CAATAACA--AATA-A-AACA--A-G-AACCTGCAG--CA-CAGCTGCTT-TGACAA-GA-T-GATAT-AGAGA-ATTTCATTTAACTGCC--GTA---AA-TAATC---AATT-C-TAATC-CC----------CCAG--CTGCGTGTAGT-G---TAAA--T--------G-TTTA-C--------TACCTA-AATCCTGTAACAAATACACATACGTTTTTTTATTAATG-----G-TCGAAACGACCTCT--TATA-CGA-A----AG----GACTGAAATAGTTTG---A-TTGTGAC--GAATGTGTAATAATT-AC-A-----GCGAACCTG-TT-AGTTTGTT-GTATGTGATTTA
gi|10 : GCTGCTA-TGAAAA-TG-T-GATAC-AGA-------CCTTTAACTGGT--TTA---AA-TAATC---AATT-C-TAACT-GTT---------ACAA--TTGCTTGTTGT-G---TAAA--A--------G-TTAA-C--------TGTTTA-AATAC
gi|10 : TTGTTAT-G---T-----T--------G-TTTA-----------ACCTA-GAGTCATAAACAAA-----ATA------TTC----------------GAAACGACCTCA--AGTA-CAA-A----AC----GACTAAGGTTTTTTGGT-G-TAGTGGC--GGGTGTATtttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaa--GTA---AA--AATTTGAAATTGC-TATAC-TT----------ACAACTTTATTTGTTTT-AATATAAA--T--------G-TGTT-T--------GACCTA-CAGTCAGCAACAAATATATATT------TTC-T---GT-----A-TAGAAACAACCTTG--TGTA-TGA-A----AC----AA----------------A-TTGTGAT--GGATGTGCAATTATT-AT-A-----GCAAACC-A-TTCAGTCTGTT-TT-ca
gi|12 : agttgg-AACA--A-AATAAATACAG--CT-CAAC--------AAAA-G--T-GAGTG-GGGGA-ATAAGATTTAACAGCC--ATA---AAACAACT---AGTT-C-CAAAC-GT----------ACAA--CTAAGTGCTAT-A---TACA--G--------G-TCTA-T--------TATTTA-AAattaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|12 : --TTCTTTGTCAT-A---TAAA--T--------G-TG-A-C--------TA-TTA-G--TCGGAAACAAACACACATA------CTTGG---GG-----GATCTAAACTACGTTG--TGTA-TGA-A----AC----Gcattttattttcataatatttctttgtcatataaatgtgactattagtcggaaacaaacacacatacttgggggatctaaactacgttgtgtatgaaacg
gi|13 : aacaaaataaatacagctcaacaaaagtgagtgggggaataagatttaacagccataaaacaactagttccaaacgtacaactaagtgctatatacaggtctattatttaaacattttattttcataatat-A-AACA--C-GAAGCATGCAG--CA-AAGTTGCTT-TGAAAA-AAGT-GATTT-AGAGA-ATTGCTTTAAACTGTT--ATA---AA-TGATC---AATT-C-CAAAC-GT----------ACAA--TTGATTGTCCT-A---TAAA--G--------G-TTTA-TTTTCTCAATACTTA-AATTC
gi|14 : atACCTCGGTGT---CTAGTGGTATATGTTAAAC--GTCCATCTTGCATGCAGGGGTTTGTGTGTTT-AT------------------G---------------AA-GGGTTTATGCAAACAA-TTGT--TAGAAG---CCTATG-TTAACACT--GCATttgttatatatatataaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|15 : taacataaaagataatttgataatttgtatattttatctatctatataaaaaatatttttggttataaaattgtggttcctatcagaaccgtcCCGCAACAAATGCACATA------TTCCC---GG-------TCGAAACGAGATCA--CGTA-CGA-A----GC----GACTAAGATACTTTG-T-A-Tc
gi|16 : gtattataatacaagttgtttggacagtggagtTC---AATT-CTCAAAA-GT----------G-----TTTATTGTTAT-A---TAAA--TAGGAAGTTG-TTTG-C--------CA--TA-GAGTCAGCAGCGACTACACATA------TTCA----GG-----A-TCGAAATTGCGTCG--TGTA-CGA-A----AC----GACTAgatactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|17 : aatataatttaaactgcattaatagtaagtttcaaaggtacacattctaattgtgtattattaaagattaacttttAACAAATACTCATA------ATTAT---AATCACAG-TTAAAACAACCTTA--TGTA--GATA----AC----AACTAAAATAGTTTGGT-A-TTGTGAC--GGATGTGTAATAGTT-AT-A-----GCAAACCAG-TT-GGTCTGTT-TTCTGTTcag
gi|18 : TTCGTT-A-TTATGAC--GAATGTGCAATAATT-AT-T-----GCAAATC-GTTT-CGTCTCTC-TC-TGttattatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|19 : agtaaatcagtaacatgcgaCTACAACAAGTACACATA------GTCAT---GG-----A-T-GATATGACCATG--TGTG-TGA-A----AT----GACTATGATTGTTTAAT-A-TT-TGAT--GGATACGCATTCATT-AT-ccagacgttgtttttttaggcgcgtgcgtctatcgatacagattaacttctcttcacatctccgacacctgtttttcataaagttatcatagaatatgatca
gi|2 : gaAA--CA-CAGCTTATT-TGAAAA-TT-T-TAAATTGGAGA-ATAATATTTAACTGCC--ATA---AA-TGATA---AATT-C-CAAAC-GT----------ACAA--TTGATTGTTAT-G---TTTA--G--------G-TTTA-C--------TATTTA-AATACaagtcacttctcattaactattttcatgaatgcacattcagagatacatgctgtaaatcataatcttgaatatcaagtacatt
gi|2 : tataattT-A---TAAAGTT--------G-TTTG-----------ACCTA-AAGTCAGCAACAAATACAAATA------TTCA----AG-----G-TCAAAACGACCTTG--TGCA-CAA-A----AC----GACTAAGGTAGTTGGAT-A-TTGTGAC--GGATGTGTAATGATT-AT-T-----G-AAATT-GATT-AGCCTGCT-GT-TGTTGTTTtaaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|20 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacaaCA--AATA-A-TATA--C-GAAACATGCAG--CG-TAA--GTTTCTGAAAA-GT-T-GATAT-AAAGATATG-CGTTTAACTGCA--GTT---AA-TAATC---GATT-C-CAAGC-GT----------G-AA--CTACTTGATGA-G---TAAA--T--------A-TCTA-C--------TGTTTA-AGTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgAAAAACA----TG-A-AACA--A-TGCATATGCAG--CA-TAACTGCTT-TGGAAA-AA-T-GATAC-ATGGA-ATTA-GGTTAACTGCT--TTATTGAA-TA------AATT-C-CAAAC-AT----------ACAA--CCATTTGTT-T-G---T-AA--T--------ACTCTA-C--------AACTAA-AAT
gi|23 : TTCAT-A-TTGTAAC--GGAAGTGCAATTAAC-AT-C-----GCAAATC-GATT-AAACTGTCATC-TGTTatttattcaatttaaa
gi|24 : actgaattaGGTA------GAGC--ATT-GTCTCGTACGCAGGAGGTATTGGGTTCGAT----------------------------------------TTGG---TA--AA-TAATATTAATAACTTCCT-GACATGCCACTCAGTACTTAGTGGAATGTTCtaattagacgttttcatgtttgttcgtcttacgatgtttaataacatctaa
gi|25 : TGAGGTATTTTG-T-AGTTCTGACTGGGA-GTGCAATACAC-AT-T-----GCAAACCTG-TT-aacttgtatttgac
gi|26 : actaagaacaatacaGATGA-TTGTAAC--AGATATGCAATAATT-AT-T-----GCAAACC------AGTTTGtatttcattagacgttttcaaatgaatgcatcgtacgata
gi|27 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgag-AACA--A-CAAACCTGCTG--CA-GGGCTGCTT-T-AAAA-G--T-GATTT-AGAGA-GTAAGGTTTAACT--C--GTA---AA-TAATT---GGTT-C-CAAAT-GG----------GCAG--TTG
gi|29 : -TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACT
gi|3 : -AGCA--A-GAAACCTGGAG--CA-CATATGGAT-TGAAGACGA-A-GATAC-AAAGA-AT-ACATTTAACTGACAAATA---TG-TAATC---AGTC-T-CAAAC-AT----------GCAT--CTGCTTGT--G-G---CAAA--G--------G-TTTA-C--------TAGCTA-AATACTGAAActtgacattcctgagtttggcagtgctttatataatgttgact
gi|3 : cA--TTTATTATATT-G---TAAAGAT--------G-TTTG-----------ACT---AA------AACAAA-ACACATG------TTCA----GA-----A-TC-AGATTACCT-G--TTTAACGA-AGAAAAT----GACTAAGATTGTTTGAT-A-TTATGGC--GGATGTGTAATAATT-AT-T-----GCAAACC------AGTCTGTT-Tattgtatttattatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|30 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtTGGTGGTA------AAGC----CTGTCTCTCAAGTGGTGTGTTAACGGTTCGAT--CCC-------------cattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|31 : agTCTGGAGCAC--TGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAaatcgagtgataacaaatactttaca
gi|32 : aGCC--GTA---AA-TAATA---AATC-C-CAAACTGT----------ACAA--TAGTTTGTTG------------T--------G-TTAA-C--------TATTTA-AATACTGt
gi|33 : ATATA-AACA--A-GAAATATTCAG--CA-CAGCTACTT-TGCAAA--A-TAGATTT-AAAGA-ATTA
gi|34 : tcgACGACCTCA--TGTA-AGA-A----AC----AAATAAAATTGTTTGAT-A-TTGTGAC--GGTTGTGTAATAAT
gi|35 : GTGATCTAGGGATA------CTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAAT--C
gi|36 : TAAGGTAGTTTGAC-A-TTGTGAC--GGATGT---ACACTT-GA-T-----GCAAAC
gi|37 : GGTAGTTTGGT-A-TTGTGAC--GGATGTGAAAAAATT-AT-T-----GTAAACC-ttgtgc
gi|4 : tAAATGACAA---GACGGCAGTGTGGTCTAGTGGTA------GAAC--GTCTGTCTCGCATGCGGAAGGTCATGGGTTCAAT--CCCGATCGGGTTATACC---------------AAAGACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAAC-ACCAT---A-------CAACAACA--ACTT-A-AATG--ACAAAATATACAAACCA-CAACTCATA-TAAAAA-CA-T-
gi|5 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaTGAGACCGCAGCATGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT--CCT-------------CGGCCGGGTCAGACCAAA-GACTTTA---AA--AA-TGGTACTAGAAGCTTCCT-AGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACAAC---AGCAGCAGCAGCAACAGCAATA-ATAACAGCA-GCAACA-GCAG--CAGCAGCttgctacacac
gi|6 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgattACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCACCTCGCATGCAGAAGGTCCTGGGTTCAAT--CCCTGG----------C---------------CG-GGTCATA---CC--AA-AGGTACTAGAAGCTTCCT-TGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAAC-ACCACTAAA-------CAACAACA--Aaacaacaac
gi|7 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgaccc---TAAA--TC-------G-TTTAACA-------TACGTATCAT-CAGCAACAAATATATATG------TGCTTA--GG-----G-TCGAAAC--CCCCGTTTGTA-CGA-A----TT----GACTAGTGTAACTTGAT-A-TTGCGAC--GGATAGGTAGAGATT-ATATATGTAGTAAACCGG-TT-CGTCTATT-Tcaacaactgacccacaatgatcctgctggaca
gi|8 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatTGCC--ATA---AA-TAATT---AATT-C-CAAAC-GTTTGTTAACACACAA--TT---TGTTATCA---TAAAGTT--------G-TTTG-----------ACTTA-A-TGGAGCAACATATATTC-TA------TCCA----AA-----G-TCCAACTGCCTTTA--TGTA-TGA-A----ATACATGACTAAGGTGGTTTGAT-A-TTGTGAT--GGATGTGTAATAATTCAA-T-----GCAAACcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|9 : ACCTTG--TGTA-CGA-A----AC----AACTAAGGTAGTTTGAT-A-TTGTGAC--GGATATGTAATAtttgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
blockSeqs : TGA G TATGTT ATG C G CCTCGGCCGGGTCAGACCAAA G TGCAAAC . AT A A A G AACACTT . . A AGCAGCAG GC T T GC C AC G C AAG A A T T AAGA AAA TTG A TTGA G T T TTGTTAACAC CT GC TTAATA TAGGAAGTT C TTTTCTCAAT T T TA A . ATAATCACAG G G C TT A T GAAA ACAT G G G TG C ATATGTA AG C A C
blockSeqs : TGG G . G T G CCCGATCGGGTTATACCAAA C TA . G A T . . . . . . TAAA . . . . . . . . CGA . T . . TGCT T . . C . . . T . AT ATCA GTT . ACAT C . GT A . GGGGGA G A T . . . . . G . . . . A GT . . .
blockSeqs : . G . A T A CCCTGGCCG C AA . T A C . . . . . . A . . . . . . . . TG . T . . AATA G . . T . . . . . AA GTG GAT . CT C . GT G . TTAGGG T T T . . . . . T . . . . A GA . . .
blockSeqs : G . G T A GAA T AA . T A C . . . . . . . . . . . TT . A . . AAGG A . . C . . . . . CT ATG GTT . TG T . TT C . ATGGA G G C . . . . . A . . . . T GA . . .
blockSeqs : . . G C G . . CC . A G G . . . . . . . . GT . A . . GCG A . . C . . . . . GA ATA TC . TT C . GT A . TGTA G T C . . . . . A . . . . T TG . . .
blockSeqs : . G C A T A . . . . . . . AA . A . . TAG A . . A . . . . . TA ATA A . CT T . TA T . CCGG A A T . . . . . A . . . . C GG . .
blockSeqs : . . . . . . . . . . CA . T . . ACA G . . C . . . . . GA CTA T . CC C . GT A . AGGA G G T . . . . . A . . . . T A . .
blockSeqs : . . . . . . G . A . . CC T . . T . . . . . AC ATA T . CT T . TA T . AAGG A G T . . . . . A . . . . T . .
blockSeqs : . . . . . . G . T . . G . . C . . . . . AT ATG G . CT C . TA T . AGAA G T C . . . . . A . . . . T . .
blockSeqs : . . . A . G . . A . . . . . GC GAG T . CA G . TG A . AAAG C G C . . . . . A . . . . T
blockSeqs : A . . T . . . . . TA TTG G . CT C . T A . . . G T . . . . . G . . . . T
blockSeqs : . . . . . . GT TG G . CT T . T . . T . . . . . A . . . . T
blockSeqs : . . GG T . . C . . . . . . . . A . . . .
blockSeqs : . G T . . C . A . . .
blockSeqs : G . . . . . . . .
blockSeqs : T . . . . . . . .
blockSeqs : . . .
blockSeqCons : G** CCCGGCCGGAA************************** ****** AGGG**********
originalCons : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT--CCC-------------C---------------AA-GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------TTCAT---GG-----G-TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
finalCons : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGCG--TCCGTCTCGCATGCGGAAGGTCATGGGTTCGATCCCGGCCGGAA--------------------------GANTTTA---AA--AA-TGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACATA------TTCAGGG----------TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT
Alignments
lowQualScore : 111 111111 9999999999999999999999999999999999999 2222222 1 1 1 44444444444 1111 1111 1111111111 11111111111 11111111111 1111111111 1111111 222 1
lowQualScore : 888 1 444444 888 5 2 6666666666666666666666666666666666666 99 66 0 1 1 8 8 6666666 0 0 0 0 0 11111111111 99 5 4 55 4 55 3 0 3 7777 3 1 4 4 4444 555 555 3 6666 3 3 3 6666666666 33 44 6666666 88888888888 2 88888888888 2 2 66 2 0 4444444444 0000000 33 44 1 2 1 33 2 2 6666 6666 0 4 2 2 33 2 8888888 888 4 5 3
lowQualScore : ... . ...... ... . . ..................................... .. .. . . . . . ....... . . . . . ........... .. . . .. . .. . . . .... . . . . .... ... ... . .... . . . .......... .. .. ....... ........... . ........... . . .. . . .......... ....... .. .. . . . .. . . .... .... . . . . .. . ....... ... . . .
lowQualScore : 222 0 444444 222 4 2 4444444444444444444444444444444444444 22 00 7 4 0 0 0 0000000 8 0 0 2 0 00000000000 22 7 0 55 0 00 6 5 6 5555 6 4 0 0 3333 444 888 3 1111 1 1 1 5555555555 77 66 9999999 88888888888 4 33333333333 1 4 33 1 4 6666666666 5555555 66 66 0 1 6 99 9 9 1111 1111 5 4 2 2 22 9 7777777 111 0 0 3
consensus : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT---CC-C-GGTCGG---------AA--GACTTTA---AA--AATGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACA----------TA----T--TCAGGG--TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
Reference ( family-1772 ) : AAGTGACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCGTCTCGCATGCGGAAGGTCATGGGTTCGAT---CC-C-GGCCGG---------AA--GANTTTA---AA--AATGGTACTAGAAGCTTCCT-TGCTTGACGCTCAGCATTTAGAGGANAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTCA-------AGTAGACACCGTCGCGATATGACTG-AAA-AATTGTTGAAAGCGACGCTAAAC-ACCAC---A-------CAACAACA--AATA-A-AACA--A-GAAACATGCAG--CA-CAGCTGCTT-TGAAAA-GA-T-GATAT-AGAGA-ATNACGTTTAACTGCC--GTA---AA-TAATC---AATT-C-CAAAC-GT----------ACAA--TTGNTTGTTNT-G---TAAA--T--------G-TTTA-C--------TACTTA-AATNCNGCAACAAATACACA----------TA----T--TCAGGG--TCGAAACGACCTCG--TGTA-CGA-A----AC----GACTAAGGTAGTTTGAT-A-TTGTGAC--GGATGTGTAATAATT-AT-T-----GCAAACC-G-TT-AGTCTGTT-TT-TGTTGTTTA
gi|1 : AAGTAACAA--GTACCACAGCGCAGTCTAGTGGTA------GAG--------------ATGCAGATATTCATTGGCCCGATATCCC-C-AAT--G---------AATGGA----A---AA--AATGTTATTAGAAGCTTCCT-CGCTTAGCGCTCAGCATTTAAAAGATTGTTCTAGGTATGGTCAACCCGGTGTCAGTATAATGCGACTGGGTGGGGTATCATACCATGTGTATGCGGCATGATACTCCAGAGTGACAGCGCTCAG-AAT-ACTGTCTTA-------AGAAGACACCATCGCGATATGACTATAAACAAGTTTTGAATGTGACGCTGAAC-ACCAT---A-------CAATAACA--AATA-A-AACA--A-G-AACCTGCAG--CA-CAGCTGCTT-TGACAA-GA-T-GATAT-AGAGA-ATTTCATTTAACTGCC--GTA---AA-TAATC---AATT-C-TAATC-CC----------CCAG--CTGCGTGTAGT-G---TAAA--T--------G-TTTA-C--------TACCTA-AATCCTGTAACAAATACACATACGTTTTTTTA----T--TAATGG--TCGAAACGACCTCT--TATA-CGA-A----AG----GACTGAAATAGTTTG---A-TTGTGAC--GAATGTGTAATAATT-AC-A-----GCGAACCTG-TT-AGTTTGTT-GTATGTGATTTA
gi|10 : GCTGCTA-TGAAAA-TG-T-GATAC-AGA-------CCTTTAACTGGT--TTA---AA-TAATC---AATT-C-TAACT-GTT---------ACAA--TTGCTTGTTGT-G---TAAA--A--------G-TTAA-C--------TGTTTA-AATAC
gi|10 : TTGTTAT-G---T-----T--------G-TTTA-----------ACCTA-GAGTCATAAACAAA-----A----------TA----T--TC--------GAAACGACCTCA--AGTA-CAA-A----AC----GACTAAGGTTTTTTGGT-G-TAGTGGC--GGGTGTATtttgaaatttatttgttataaaatattaaattgttatgttgtttaacctagagtcataaacaaaatattcgaaacgacctcaagtacaaaacgactaaggttttttggtgtagtggcgggtgtatca
gi|11 : gctgctatgaaaatgtgatacagacctttaactggtttaaataatcaattctaactgttacaattgcttgttgtgtaaaagttaactgtttaaatactttgaaatttatttgttataaaatattaaa--GTA---AA--AATTTGAAATTGC-TATAC-TT----------ACAACTTTATTTGTTTT-AATATAAA--T--------G-TGTT-T--------GACCTA-CAGTCAGCAACAAATATATA----------TT----T--TCTGTA--TAGAAACAACCTTG--TGTA-TGA-A----AC----AA----------------A-TTGTGAT--GGATGTGCAATTATT-AT-A-----GCAAACC-A-TTCAGTCTGTT-TT-ca
gi|12 : agttgg-AACA--A-AATAAATACAG--CT-CAAC--------AAAA-G--T-GAGTG-GGGGA-ATAAGATTTAACAGCC--ATA---AAACAACT---AGTT-C-CAAAC-GT----------ACAA--CTAAGTGCTAT-A---TACA--G--------G-TCTA-T--------TATTTA-AAattaaacataaatttaaagtttttgcatcttacagcacaaacta
gi|12 : --TTCTTTGTCAT-A---TAAA--T--------G-TG-A-C--------TA-TTA-G--TCGGAAACAAACACACA----------TA----C--TTGGGGGATCTAAACTACGTTG--TGTA-TGA-A----AC----Gcattttattttcataatatttctttgtcatataaatgtgactattagtcggaaacaaacacacatacttgggggatctaaactacgttgtgtatgaaacg
gi|13 : aacaaaataaatacagctcaacaaaagtgagtgggggaataagatttaacagccataaaacaactagttccaaacgtacaactaagtgctatatacaggtctattatttaaacattttattttcataatat-A-AACA--C-GAAGCATGCAG--CA-AAGTTGCTT-TGAAAA-AAGT-GATTT-AGAGA-ATTGCTTTAAACTGTT--ATA---AA-TGATC---AATT-C-CAAAC-GT----------ACAA--TTGATTGTCCT-A---TAAA--G--------G-TTTA-TTTTCTCAATACTTA-AATTC
gi|14 : atACCTCGGTGT---CTAGTGGTATATGTTAAAC--GTCCATCTTGCATGCAGGGGTTTGTGTGTTT-AT-------------G---------AA--GGGTTTATGCAAACAATTGT--TAGAAG---CCTATG-TTAACACT--GCATttgttatatatatataaagtagatgtatagtgagaaacaaatacaaaatatcttaatcacatgaccgcatgataaaa
gi|15 : taacataaaagataatttgataatttgtatattttatctatctatataaaaaatatttttggttataaaattgtggttcctatcagaaccgtcCCGCAACAAATGCACA----------TA----T--TCCCGG--TCGAAACGAGATCA--CGTA-CGA-A----GC----GACTAAGATACTTTG-T-A-Tc
gi|16 : gtattataatacaagttgtttggacagtggagtTC---AATT-CTCAAAA-GT----------G-----TTTATTGTTAT-A---TAAA--TAGGAAGTTG-TTTG-C--------CA--TA-GAGTCAGCAGCGACTACACA----------TA----T--TCAGGA--TCGAAATTGCGTCG--TGTA-CGA-A----AC----GACTAgatactagtaaatcagagcgtcttatgatactgactaagttatcttcgttacttcgacgcttgttttttccgaaaaggaaacatcggagacatataaagat
gi|17 : aatataatttaaactgcattaatagtaagtttcaaaggtacacattctaattgtgtattattaaagattaacttttAACAAATACTCA----------TAATTATAATCACAG--TTAAAACAACCTTA--TGTA--GATA----AC----AACTAAAATAGTTTGGT-A-TTGTGAC--GGATGTGTAATAGTT-AT-A-----GCAAACCAG-TT-GGTCTGTT-TTCTGTTcag
gi|18 : TTCGTT-A-TTATGAC--GAATGTGCAATAATT-AT-T-----GCAAATC-GTTT-CGTCTCTC-TC-TGttattatttgcgcataatgtagatgcactttatgaatcttacaatgcagacagactag
gi|19 : agtaaatcagtaacatgcgaCTACAACAAGTACACA----------TA----G--TCATGG--ATGATATGACCATG--TGTG-TGA-A----AT----GACTATGATTGTTTAAT-A-TT-TGAT--GGATACGCATTCATT-AT-ccagacgttgtttttttaggcgcgtgcgtctatcgatacagattaacttctcttcacatctccgacacctgtttttcataaagttatcatagaatatgatca
gi|2 : gaAA--CA-CAGCTTATT-TGAAAA-TT-T-TAAATTGGAGA-ATAATATTTAACTGCC--ATA---AA-TGATA---AATT-C-CAAAC-GT----------ACAA--TTGATTGTTAT-G---TTTA--G--------G-TTTA-C--------TATTTA-AATACaagtcacttctcattaactattttcatgaatgcacattcagagatacatgctgtaaatcataatcttgaatatcaagtacatt
gi|2 : tataattT-A---TAAAGTT--------G-TTTG-----------ACCTA-AAGTCAGCAACAAATACAAA----------TA----T--TCAAGG--TCAAAACGACCTTG--TGCA-CAA-A----AC----GACTAAGGTAGTTGGAT-A-TTGTGAC--GGATGTGTAATGATT-AT-T-----G-AAATT-GATT-AGCCTGCT-GT-TGTTGTTTtaaaatttctattttttgtactacaatataaagttgtttgacctaaagtcagcaacaaatacaaatattcaaggtcaaaacgaccttgtgcacaaaacgactaaggtagttggatattgtgacggatgtgtaatgattattgaaattgattagcctgctgttgttgttttttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|20 : tataattaacacagcttatttgaaaattttaaattggagaataatatttaactgccataaatgataaattccaaacgtacaattgattgttatgtttaggtttactatttaaatactaaaatttctattttttgtactacaaCA--AATA-A-TATA--C-GAAACATGCAG--CG-TAA--GTTTCTGAAAA-GT-T-GATAT-AAAGATATG-CGTTTAACTGCA--GTT---AA-TAATC---GATT-C-CAAGC-GT----------G-AA--CTACTTGATGA-G---TAAA--T--------A-TCTA-C--------TGTTTA-AGTtttatttgattaaaagcacatatctgagataatcaagataagtttgtatttaaagatgcacacatttgtaaatattgaaatgaagtagatggactgtttaccagtagaaagatttgatacatgcactttgcgatgcttggcctttggccagaaagaggatacttaaaaagaagaactaagttgacaatacagttt
gi|21 : tgtgatacaaatatgaagtgaaaaaaaaccattatgAAAAACA----TG-A-AACA--A-TGCATATGCAG--CA-TAACTGCTT-TGGAAA-AA-T-GATAC-ATGGA-ATTA-GGTTAACTGCT--TTATTGAA-TA------AATT-C-CAAAC-AT----------ACAA--CCATTTGTT-T-G---T-AA--T--------ACTCTA-C--------AACTAA-AAT
gi|23 : TTCAT-A-TTGTAAC--GGAAGTGCAATTAAC-AT-C-----GCAAATC-GATT-AAACTGTCATC-TGTTatttattcaatttaaa
gi|24 : actgaattaGGTA------GAGC--ATT-GTCTCGTACGCAGGAGGTATTGGGTTCGAT----T-T-GGT---------------------------A--AATAATATTAATAACTTCCT-GACATGCCACTCAGTACTTAGTGGAATGTTCtaattagacgttttcatgtttgttcgtcttacgatgtttaataacatctaa
gi|25 : TGAGGTATTTTG-T-AGTTCTGACTGGGA-GTGCAATACAC-AT-T-----GCAAACCTG-TT-aacttgtatttgac
gi|26 : actaagaacaatacaGATGA-TTGTAAC--AGATATGCAATAATT-AT-T-----GCAAACC------AGTTTGtatttcattagacgttttcaaatgaatgcatcgtacgata
gi|27 : tgttcgatcaggttactagtgtattagtgacgctgttaccagattgag-AACA--A-CAAACCTGCTG--CA-GGGCTGCTT-T-AAAA-G--T-GATTT-AGAGA-GTAAGGTTTAACT--C--GTA---AA-TAATT---GGTT-C-CAAAT-GG----------GCAG--TTG
gi|29 : -TACTTGACATTCAGCATTTAGAGGATAATTCTTGGACT
gi|3 : -AGCA--A-GAAACCTGGAG--CA-CATATGGAT-TGAAGACGA-A-GATAC-AAAGA-AT-ACATTTAACTGACAAATA---TG-TAATC---AGTC-T-CAAAC-AT----------GCAT--CTGCTTGT--G-G---CAAA--G--------G-TTTA-C--------TAGCTA-AATACTGAAActtgacattcctgagtttggcagtgctttatataatgttgact
gi|3 : cA--TTTATTATATT-G---TAAAGAT--------G-TTTG-----------ACT---AA------AACAAA-ACACA----------TG----T--TCAGAA--TC-AGATTACCT-G--TTTAACGA-AGAAAAT----GACTAAGATTGTTTGAT-A-TTATGGC--GGATGTGTAATAATT-AT-T-----GCAAACC------AGTCTGTT-Tattgtatttattatattgtaaagatgtttgactaaaacaaaacacatgttcagaatcagattacctgtttaacgaagaaaatgactaagattgtttgatattatggcggatgtgtaataattattgcaaaccagtctgtttcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|30 : cagcaagaaacctggagcacatatggattgaagacgaagatacaaagaatacatttaactgacaaatatgtaatcagtctcaaacatgcatctgcttgtggcaaaggtttactagctaaatactgaaaattgtTGGTGGTA------AAGC----CTGTCTCTCAAGTGGTGTGTTAACGGTTCGAT---CC-C-AATCGcattagatgctttaaagtttgtacatcttacgatacagactaattactcttgaacatctagaacacttgctgttatttgagacaatcagtctgtatcataagacgcagatctaaatgaaacatacataccatttacaggtacatgtagtatgttcccagacacatgcctttggctattttttttgagctaccatattgt
gi|31 : agTCTGGAGCAC--TGCTCCAGTGTGGCAGGGCTTAC-TGT-ACTGTCCCAAACACTTAGCAGGCACTGTTGTGAT-TGAagtgataacaaatactttaca
gi|32 : aGCC--GTA---AA-TAATA---AATC-C-CAAACTGT----------ACAA--TAGTTTGTTG------------T--------G-TTAA-C--------TATTTA-AATACTGt
gi|33 : ATATA-AACA--A-GAAATATTCAG--CA-CAGCTACTT-TGCAAA--A-TAGATTT-AAAGA-ATTA
gi|34 : tcgACGACCTCA--TGTA-AGA-A----AC----AAATAAAATTGTTTGAT-A-TTGTGAC--GGTTGTGTAATAAT
gi|35 : GTGATCTAGGGATA------CTCCATGTCTGTTTCGCATGCAGAAAGTCATGGGTTTAAT---C
gi|36 : TAAGGTAGTTTGAC-A-TTGTGAC--GGATGT---ACACTT-GA-T-----GCAAAC
gi|37 : GGTAGTTTGGT-A-TTGTGAC--GGATGTGAAAAAATT-AT-T-----GTAAACC-ttgtgc
gi|4 : tAAATGACAA---GACGGCAGTGTGGTCTAGTGGTA------GAAC--GTCTGTCTCGCATGCGGAAGGTCATGGGTTCAAT---CC-C-GATCGGGTTATACCAAA--GACTTTA---AA--AATGGTACTAGAAGCTTCCT-TGCTTGACACTCAGCATTTAGAGGACAGTTCTAGGTCTGTTTGACCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTTCAGTGTGATAGCGTTCAGAAATGACTGTCTCA-------AGTAGACACCGTCACGATATGACTA-AAA-AATTGTTGAAAGCGACACTAAAC-ACCAT---A-------CAACAACA--ACTT-A-AATG--ACAAAATATACAAACCA-CAACTCATA-TAAAAA-CA-T-
gi|5 : cagaaggtaaaacttggacatttttaacatttaaatcggctgaacatctatattcccagtctaTGAGACCGCAGCATGGTCTAGTGGTA------GAGC--GTCCGCCTCGCATGCGGAAGGTCATGGGTTCGAT---CCTC-GGCCGGGTCAGACCAAA--GACTTTA---AA--AATGGTACTAGAAGCTTCCT-AGCTTGGCGCTCAGCATTTAGAGGACAGTTCTAGGTCTGGTCGGCCCGGTGTCAGTATAATGTGACTGGGTGGGGTATCATACCACGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTCAG-AAT-ACTGTCTGA-------AGTAGACACTGTCGCGATATGACTG-AAA-AATTGTTGAAAGAGACGCTAAACAACAAC---AGCAGCAGCAGCAACAGCAATA-ATAACAGCA-GCAACA-GCAG--CAGCAGCttgctacacac
gi|6 : actttagattgattgaatgggatagtatgttgatattatatagaacagaacaaatattaatttcgattACAATGGGACCGCGGCGTGGTCTAGTGGTA------GAGC--GTCCACCTCGCATGCAGAAGGTCCTGGGTTCAAT---CC-CTGGCCGG---------GT--CATACCA---AA-----GGTACTAGAAGCTTCCT-TGGTTGACACTCATCATTTAGAGGAGAGTTCTAGGTCTGGTTGGCCCGATGTCAGTATAATGTGACTGGGTGGGGTATCATACCATGTGTCTGCGGCATGATACTCCAGTGTGACAGCGCTTAG-AAT-ACTGTCTCA-------AGTAGACACTGTCGCGATATGACCG-AAA-AATTGTTGAAAGCAACGCTAAAC-ACCACTAAA-------CAACAACA--Aaacaacaac
gi|7 : ttaatgtaaagataatacacaagcctttttacttttaactaagctctaaattaaaatattgtttgttagccacttcaggctgaccc---TAAA--TC-------G-TTTAACA-------TACGTATCAT-CAGCAACAAATATATA----------TG----TGCTTAGGG--TCGAAAC--CCCCGTTTGTA-CGA-A----TT----GACTAGTGTAACTTGAT-A-TTGCGAC--GGATAGGTAGAGATT-ATATATGTAGTAAACCGG-TT-CGTCTATT-Tcaacaactgacccacaatgatcctgctggaca
gi|8 : atgctataaatacagttttgataaagtcataggtacaataaaatttaattggcataagttaccagtttttgcttgctgtgtaaaactgtacttgttaaataccttaaaatagatgtcataatatTGCC--ATA---AA-TAATT---AATT-C-CAAAC-GTTTGTTAACACACAA--TT---TGTTATCA---TAAAGTT--------G-TTTG-----------ACTTA-A-TGGAGCAACATATATTC-----------TA----T--CCAAAG--TCCAACTGCCTTTA--TGTA-TGA-A----ATACATGACTAAGGTGGTTTGAT-A-TTGTGAT--GGATGTGTAATAATTCAA-T-----GCAAACcgatttaacgtatgtagtgttggtcatatacaacgctttttttttcaaaaagcaaaaccaaagatgatcaggattaaaaagactgtatcgcaagacgcatacatttgaa
gi|9 : ACCTTG--TGTA-CGA-A----AC----AACTAAGGTAGTTTGAT-A-TTGTGAC--GGATATGTAATAtttgtgtatcttacaataaagactaactagtcttgttctctttcaatgtttatattttttaaagtctatcataagacaaacatattagaaaacatcgaaatgaaacaagatacagatagactgtttgcaggtagaagaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTGTTGTTTTGGTAGTTTTTTTAGAAGCAAGTATCAGAGATAATCGATACTGTTTAGTCTGTCATAAGACTACATATTTTAAATCATTTAAATGAAATAAACAGAATGTAATTGCCTGATGCATGCACCT
Unaligned ( gi|28 ): TGAATGTTATACCCAGTTAATTTTTTTAATCACACGGCAGCGTGACCTAGTAGAAGAGTTTGCCTCAAAAGCAGAAGGTTGTGGGT