lowQualScore : 111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111
lowQualScore : 444444 222 11 444444 1 11 333333 1 11 000000000000000000000000000000000000000000000000 1 444444444444444444444444444444444 3333 4444444 11111111 2222 2 111 2222 2222 1 33333 11 33333333 11111111111111 333333333333 66666666666666666666666666666666666666 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 2 11 1111 111111 2222222222 1 66666 222222 333333333 66666666666666666 22 222 7777777777 1 55 777 1 4 1 1 33 4 222 1
lowQualScore : 666666 333 7 44 000000 3 88 7 1 888888 3 6 4 11 222222222222222222222222222222222222222222222222 0 5 9 888888888888888888888888888888888 6666 7 6666666 1 1 44444444 6666 3 0 444 66 4444 3 1 7 1111 3 3 5 77777 88 2 00000000 3 555 5 66666666666666 2 6 1 666666666666 99999999999999999999999999999999999999 111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1 55 1 4 2 44 8888 777777 1111111111 3 2 44444 6 2 8 2 555555 8 555555555 99999999999999999 2 33 111 5555555555 7 55 6 000 6 5 6 0 5 5 22 6 0 111 6 7
lowQualScore : ...... ... . .. ...... . .. . . ...... . . . .. ................................................ . . . ................................. .... . ....... . . ........ .... . . ... .. .... . . . .... . . . ..... .. . ........ . ... . .............. . . . ............ ...................................... ... ....................................................................................................... .. . .. . . . .. .... ...... .......... . . ..... . . . . ...... . ......... ................. . .. ... .......... . .. . ... . . . . . . .. . . ... . .
lowQualScore : 222222 333 3 33 333333 3 33 7 0 333333 3 7 2 88 888888888888888888888888888888888888888888888888 2 0 2 888888888888888888888888888888888 3333 0 8888888 0 0 22222222 8888 2 0 888 88 2222 2 2 0 2222 2 7 0 88888 88 5 22222222 5 999 0 22222222222222 0 9 4 111111111111 77777777777777777777777777777777777777 999 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 7 88 4 3 1 33 4444 000000 5555555555 5 0 22222 6 2 0 8 000000 0 444444444 88888888888888888 8 00 000 0000000000 0 00 0 000 0 0 0 0 0 0 00 0 0 000 0 0
consensus : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTG-ACTAGT-AA--GACCTT-AAA--TGANCGTTC------GT-TAACCAATTTGATTGTAA----------TGTTT-TTC---TG----TTTTTT---TG-------CAAACCTGGCTCATCACCCTGGAGA-AATCCC---GCAGTTGC-GTTTTA--TTGCC--GTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATANTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TACC-AGTTACACAAATGCTTGCATACGGAT-ATAG--NCTGGTG----TACATGTATANTTTTA-ATCAGC-TGCGCTATTTTATCG---GAGTA---T----TT-----ATTTTATCGGTAACCAGTCTCC--GACN---AAT--T-AT-------TT--N--T---TTCCAT---ATACAANTNTTTGCTTTGAG----ATTATTT-ATTTACATT--C--CGGTC-A--AATAAAAGCTGGATTAATNCGATTGATTACGGA-AAAA-TATGAAATAACCCGAACATCGGTAACATT----T-G---TATTGCGCCAATTCGGCCCCGGGAGTCGT-----CAAAAGTGCG-CCATTTGT-G-TTTAA-A--------GGGGCCAATGGTGCAATGA-ACGNGATCTAGATTGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAA---ACATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAG
Reference ( gi|1 ) : ATGTTTACACTCCATGTGACTG------TTAA---AGTACTGAACTAGTAAATAGACCTT-AAA--TGATCATTC------GT-TAAGCAGTTTGTTTGTAA----------CGTTT-TTT---TG----TTTTTT---TG-------CCAACCTAGCTGATCACCC--GGGA-AACACC---ACAGTTGCCATTTCA--TTGCC-AATTTATTTTAATATT-TAACAATAGA--AAAG--AAAGAATA---TGATATCATTTTCATTTCTTCCCAATAAAATG-GCACTTAAAATATAGCAG----AAGCATAGTTTTGTATGCGGACCATTTTTTTTATAAATCACAA---TACT-AGTTATACAAATGCTTGCATACGGAT-ATAA--TCTTGTA----TACATGTATAATTTTACATCAGCTTGCGCTATTTTATCT---GAATA---T----CT-----ATTTTATCAGCAACCAGTCTCC--AACA---AAT--T-AT-------TT--T--T---TTCCGT---ACACAAATATTCGCTTTGAG----ATTATTTCATTTACATT--C--CAGTC-A--AGTAGAGGCTGATTTAATGCGATTGATTACGGACAAAA-CATGAAATACCTGGAACATTGGTGGCATT----T-G---TATTGCACCAATTCAGTCCCTGGAGTTGTTTTAACTAAAGTGTG-CCACTAAT-G-TTTAA-A--------GGGGCCAATAATGCAATGCCACAT--TCTAGATCGAACACTGGTAGAAAATTATTACAATA---------TTTTTTTTCTTCATTTTTTTTCATTTTATAGACCAAAACAAAATTATATGTGTGGTTACCGTTTCCTGACCGACCCTATTTGTTCCAAGC-ACCCCAAGCATTTTATTGCATGATTTTCGTTATCTTCTATGGGAACTCA-TTTTATGTTATGCGATCAACCTGAATAGAGAG
gi|4 : ATATTTACACTCCATGTGACAA------TTAA---AGTACTGAACTAGTAAACAGACCTT-AAA--TGATTGTTC------GT-TTAGCAATTTGTATGTAG----------CGTCT-AT----------TTTTTT---TG-------GAAACCTACCTCATC-CCC--GTGAGAACACC---GCAGTTGCCATTTTA--TTGCC-TAGTTATTTTCATATT-
gi|9 : agtgttcaatctaggattgcagtaaagggaggaggcatccagaccacttcacatgaaaacttaggagtcattcagaaaaaggggccatcataaaaaacaatataaatgatgagctgttcattgtctgattaccgtagacattctataattagtactggaaacggtaacaggatttgattggctgattactccTGTTTACACTCCATGTGACTGGTTTTGTTAA---AGAACTGTACTGG-------ACTTTGAAA--GGAGCGTTC------AT-TAGCCACTTTGACTGTAA----------TGTTT--------G----TTTTTCAGATGGAATTAACAAACCTGGATCAACACCCTAAAGA-ATTCCT---TCAGTTGTGGT--CA--TTGTTTAGTTTGTTTT----TT-TAGCAATAGA--GAGGACAAGGAAGC---TAATATTCTTTTCAATTC--CCCA
gi|10 : agtggagtgtagatttcccatgtTGTTTACACTCAATGTAACTGGTT---TTATTTTAGT--T---CTAGTTAA--GGCCTT-GAAACTGAACATCCTTGAATGTCTAACCAATTTGATTGCAA----------TTCTTGTTT---TGCCAATATTTT---TA-------CAAACCTAGCTTATCACCCTGAGGA-A
gi|11 : atgtaataataatgagatgtttgatctcttaaatgcagatgttctataataagtactaacatgggtaatggggtttaatttgctTGTTTACACTCCATGTGACTG------
gi|8 : agtgttcagtctagtttgcagtaaaaagaggagatcacttcacaagaaaacttgggagtcattcagtaaaagggaccatcataaaaatcaatataaatggtgcgctgttcattgtctgattagcgtagacattctataattagtactggaagcggtaacgggaattgattggctGTTTGATTGTAAAGACAAAGTTTGTTT-TTCAGATG----TTTTGT---TA-------CAAACCTGACTCGTCCCCCT-GAGG-AATCCCTTTACAA-----AGTTTAGTTTGCC----TT-TTTTA------TAACAACAGATGACAT--ATAAAATAAGCTGATATTCTTTTTATTTTCCACCAATATAATG-TAACATAAAAAATGGCTGTTCTAAGCATAATATTGTATGTCGA-CA-CCTTTTTATAAATCA-AA----ACTCAGTTACACAAATACTTGatt
gi|3 : tTTTATTTT--TATTCTTGCAACAGA--AAAA--AAAAAAT----TGAG--C-TTTTAATTTTCCGCCAAT-----------TTAA--TGT-GCAA----A----TAGTTTTGTATTCCAAC-ACCTTTTT-ATAAATTACAAAATCATC-AGTTACACAAATACTTGCATACAGAT-A------------------CATGTATATTTTT------------GCCGTTTTAACG---AGAGA---T----GC-----AGTT-------AAGCAGTCTCT--GGTGGTTAAT--T--T-------TT--A--T---TTCCATTTTATATGATTTTTTGCCTCGGGGAGCATTCTATC-TTTA-ATGA-C--CTGTC-AGAAG-ACAAACTGGATTAGTTCAATTGATTATGGG-AAAA--ATTAAATAACCCAAACATCGGTAA-ATT----TCA---TATTATGCCGATTCAGCCTCGGGAATTG-----GCAAAAATGTG-CCATTTGT-G-TTTAA-A--------ATGGCCAGTGTTG-------------TTTAGATTGAACAC
gi|2 : ggAGA--AAAG--AAAGATTA---TGATATCCTTTTCATTTCTTCCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATATTTTTATATGCTGAC-ACTTTTTT-ATAAATCACAA---TACC-AGTTATACAAATGCTTGCATACGAAT-ATAA--TCTTGTA----TACATGTATAATTTTACATCAGCTTGCGCTATTTTATCT---GAATA---T----TTTTT--ATTTTACTGGCAACCAGTCTCC--AACA---AAT--T-AT-------TT--A--C---TTCCTT---ATACAAATATTTGCTTTGAG----AATATTT-ATTTACATT--C--CAGTCAA--AATAGAAGCTGATTTAATGCGATTGAATACTGACAAAA-TATGAAATAACTGGAACTTGGGTAGCATT----T-G---TATTGCACCAAGTCAGTCCTTGGAGGTGTTTTAACTAAAGTGTG-CCACTTGT-G-TTTAA-A--------GGGGCCTATGACGAAATGACACAG--TCTAGATCGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAA---ACATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAG
gi|19 : TCCTTTTCATTTCTCTCCAATAAAATGTGC-CTAAGAACATAGCAG----AAGCATg
gi|7 : gTGTATGCTGAC-ACCTTTT-TATAAATCACAG---TTTC-AATTACACAGATGCATG--------T-ATAG--TTTTACA----T-CA-GCATAATT----AT--------GCTATTCTATCA---AAGTA---T----TTTTTTCATTTTATCAATAACCAGTTTCTTGAACT---ATT--A-AT-------TTAAT--TCAATTTAAT---GCATAATTTTTTGCTTT-----------TTTT-TTTA-ATTGAC--CAGCC-A--AA-AAAATCCGGATTAATGTGACCGCTTATGGA-AAAA-TATCAAATAACCCAAACATCGttaaaaaatcattggcacaaatgcttgcataagaatatagactggtatacatttaaaa
gi|13 : -AGTTACAGCAACACTTGCATACAGAT-ATAG--ACTGGTG----CACATGTATATGTTTACATCAGTATGCACTATTTCATC----GATTA---TAAGACA-----AT------GGTAACCAGTCTCT--GAC-----AT--TAAT-------TT--A--T---TTCCAT---
gi|22 : atagaagaaaaatgtcctccaatgtaatgctgaaaccaatttataTACACAAATGCTTACATA-GTAC-ATAG--TCTGATG----TACATGCCTTATTTTA-A--AG-------TATTTT-T-------------T----TT-----ATTTTATCCCTAACCAATTGCC--AACT---ATT--G-AT-------TT--tttatt
gi|19 : ACAAATGCTTGCATAAGAAT-ATAG--ACTGGTA----TACATTTAAAA
gi|5 : gtccttttcatttctctccaataaaatgtgcctaagaacatagcagaagcatttaaaaaatcattggcTTGCATACAAATTATAGACTTTTGTAAGTGTGCTTGTATATTTTGAAATCAGTGAGCACTATTTTATCG---AAGTAATTT----TT-----AATTAATTGGCAATCAGCTCCC--AACT---A-T--T-ATTTTTTAATT--TAGT---TTCCAT------CATATATAC------AA----AT------ATT--CATT--T--TGG-------GCAG-----GATTCA-TATGATTG----CCAACAAAAACACGAAATAACATGAACATCAATAGCATTAATTT-A---TATTGCACCAATTTGGCCCCAAGAATTGT-----CTAAAGTGAG-CCATTTACAA-TTTAA-A---------TGGCCAAC----CAGTGATGTGG--TCTAAATTGAACACTG
gi|17 : TGCATATGGAA-ATAG--ACTGGTG----TATGTGTACA----TATATCAGCGTGTGCTGTTTT--CTTAAGAGTAATTT----TC-----ATATCATAAGTAACCAGTCTC-----CA---GATTCT-GT-------TT--C--C---TTCCAT---tttga
gi|21 : TATCT-ATTTTTATT--TGACAG------AATAAAAGCTGTATCAATTTGATTAATTACGGA-ATGA-TATGAAATAAATGGAACAT-----ACATT----T-GAAATATCGTATCAtatac
gi|12 : attgcaa--AATAAAAACTGGATTAATTTGATTGATTGC--AAAAAA-TATGAAACAACCCGAACATCGGCATCATT----T-G---TATTGCGCCAATTTAGCCCCAGGAGTCAT-----CAAAAGCACA-TCATTTCT-G-TTTAATAAGGACCTTGGGACCAATGGTGCAATA--ACATGATTTAGATTG
gi|20 : ttgctctattcttaggttgctaagGATTACGGA-AAAA-TATGAAACAACCAGAACATCAATAACATT----T-A---TACGGCATCAAATTGGCCAAGGAAGTTGTtt
gi|16 : gcgagaatgaaggtgggataaattttattacATTGTGCCAATTCAGCCCCAGAAGACAT-----CAAAAGTGCGACTTTTTGT-GCTTCAA-A--------AGGACCAATGGTGCAATG--ATGTGATCTAGATTGAAcaaaag
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): CTGGAAGTGAATCCTAGTGTACAATCTAGGATTGCAGTTAAGAGGGCCATTAGTGTGCCAAAGAAAAAAGGGGGCCATCATAAAAAACATTACTTATAAATGATGATGAGATGTTTGGTGTCTGAAAAGCATCTATATACATTCTATAATTGGTACGACCAGGGGTAATGGGGTGTGTATGCTTGTTAACACTCAAAGTGACTAGTTTTGTCAATGTACTGCACTGTTAAGCATTTCTTGAGAAATTC
Unaligned ( gi|14 ): TGTTCAATTTGGGATTTATTCATCTGGCCCCTTCAGAGGAAAACAGGGACAATTCCTTGAAAAATGAACTCATCATAATGATCATTATTTTAAATGATGATGTCATTCAGATGTTCAATGATTAAAAACAGTAGAAATTTTATAATTA
Unaligned ( gi|15 ): GTCATATTAAAAACTTGCATAGATGCAGTGTTCACTCTAGGATTTCAGCAAAGGGGTCAACTGGACACAGGGGGGTCACTTAGAAGAAAAGGGGTCATCATAATAAAGCATTATTAATT
Unaligned ( gi|18 ): CATCCTGTATATTGACTGGTCTACAGGTTTATTTATAAATAAATGAGCACGATTATATCGATAAACAGGTGGTAACTAGTCCCTTGCATGTAATTTATTTCCGTTATATATG
Unaligned ( gi|23 ): TCCATGTGACTGATTATAACAGACATAATATAATTAGTACTAGAAGTAGATACGGGATTTGATTGGCTTGTTTACTCCATGTTTATGTGA
Unaligned ( gi|24 ): CTGGCCACATACGAGAAGTCTATAGAACGTAAAGACCAGGTAATCATTCATAAAGATGAAT
Unaligned ( gi|25 ): CTTGCATATTGACTGGTGTATATTTTATTTACAAATTAGCGAACGCGATTTCATCGATAA
Alignments
lowQualScore : 222222 111 444444444444444 1 11 222222 1 444444444444444 2222222 222222222222 111 1111 1 4444444 11 333333 1111111 11 11 1111 1111 1111 222222 1111111 5555555555555555 33333333333333333333 1111111111111111 11 222222222 22222 3333333333333333 11111 11111 1 1111 22222 222222222 444444444 4444444444 22 333 1 1
lowQualScore : 888888 777 3 333333333333333 0 33 1 888888 0 2 0 1 999999999999999 4444444 8 777777777777 5 555 6666 2 5555555 33 444444 8888888 11 11 9999 0 1 11 3333 6 3 7777 0 0 3 1 3 6 88 7 111111 2 0 4 2 8888888 0 66 1 1111111111111111 0 66666666666666666666 33 1 2 9999999999999999 11 1 222222222 5 44444 1 1 3 5555555555555555 9 88888 1 11111 0 0 1 66 1 0 0 4 0 6 0000 5 1 4 1 88888 2 2 6 6 6 6 777777777 44 2 111111111 1 2 3 1111111111 4 77 555 3 5 2 2 77 5 3 2 4
lowQualScore : ...... ... . ............... . .. . ...... . . . . ............... ....... . ............ . ... .... . ....... .. ...... ....... .. .. .... . . .. .... . . .... . . . . . . .. . ...... . . . . ....... . .. . ................ . .................... .. . . ................ .. . ......... . ..... . . . ................ . ..... . ..... . . . .. . . . . . . .... . . . . ..... . . . . . . ......... .. . ......... . . . .......... . .. ... . . . . .. . . . .
lowQualScore : 444444 555 2 888888888888888 0 88 0 888888 0 5 8 4 000000000000000 6666666 0 444444444444 6 222 8888 8 0000000 88 888888 4444444 00 00 6666 8 0 88 6666 4 8 0000 8 8 8 0 7 7 33 3 555555 9 9 4 6 4444444 9 11 0 5555555555555555 1 55555555555555555555 99 0 2 6666666666666666 99 0 999999999 7 33333 0 0 8 8888888888888888 3 55555 8 11111 8 2 0 99 4 0 9 7 1 0 6666 0 4 0 4 66666 1 2 7 7 7 7 888888888 77 5 888888888 0 5 0 5555555555 0 55 000 0 5 5 5 00 5 0 5 0
consensus : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTG-AACTAGT-AAACAGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTG-C---GTTTCA--TTGCCTAG-TTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGA-CACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACAT--GTATANTTTTACA-TCAGC-T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTC-----C-GACT---AATT--ATTTATT---------TCCA-T-----ATACAAATATTTGCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-G-TTTAA-A--------GGGGCCAATGGTGCAATG--ACGTGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
Reference ( family-1721 ) : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTG-A-CTAGT-AA---GACCTT-AAA--TGANCGTTC------GT-TAACCAATTTGATTGTAA----------T----GTTTTTC---TGTT-TTTT---TG-------CAAACCTGGCTCATCACCCTGGAGAAATC-CCGCAGTTG-C---GTTTTA--TTGCC--G-TTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATANTTTTGTATGCCGA-CACCTTTTTTATAAATCACAA---TACCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACAT--GTATANTTTTA-A-TCAGC-T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTC-----C-GACN---AATT--ATTTNTT---------TCCA-T-----ATACAANTNTTTGCTTTGAG----ATTATTT-ATTTACATT--CCGGTCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAACATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CAAAAGTGCG-CCATTTGT-G-TTTAA-A--------GGGGCCAATGGTGCAATG-AACGNGATCTAGATTGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAA---ACATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAG
gi|1 : ATGTTTACACTCCATGTGACTG------TTAA---AGTACTG-AACTAGT-AAATAGACCTT-AAA--TGATCATTC------GT-TAAGCAGTTTGTTTGTAA----------C----GTTTTTT---TGTT-TTTT---TG-------CCAACCTAGCTGATCACCC--GGGAAACA-CCACAGTTG-CC--ATTTCA--TTGCC--AATTTATTTTAATATT-TAACAATAGA--AAAG--AAAGAATA---TGATATCATTTTCATTTCTTCCCAATAAAATG-GCACTTAAAATATAGCAG----AAGCATAGTTTTGTATGCGGACCATTTTTTTTATAAATCACAA---TACTAGTTATACAAATGCTTGCATACGGAT-ATAATCT------TGTATACAT--GTATAATTTTACA-TCAGCTT-GCGCTATTTTATC-T-GAATA---TC-T-----ATTTTATCAGCAACCAGTCTC-----C-AACA---AATT--ATTTTTT---------TCCG-T-----ACACAAATATTCGCTTTGAG----ATTATTTCATTTACATT--CCAGTCA-AG-TAGAGGCTGATTTAATGCGATT--GATTACGGACAAAACATGAAATACCTGGAACATTGGTGGCATT----T-GTATTGCACCAATTCAGTCCCTGGAGTTGTTTTAACTAAAGTGTG-CCACTAAT-G-TTTAA-A--------GGGGCCAATAATGCAATGCCACAT--TCTAGATCGAACACTGGTAGAAAATTATTACAATA---------TTTTTTTTCTTCATTTTTTTTCATTTTATAGACCAAAACAAAATTATATGTGTGGTTACCGTTTCCTGACCGACCCTATTTGTTCCAAGC-ACCCCAAGCATTTTATTGCATGATTTTCGTTATCTTCTATGGGAACTCA-TTTTATGTTATGCGATCAACCTGAATAGAGAG
gi|10 : TGTTTACACTCAATGTAACTGGTT---TTATTTTAGT--T----CTAGTTAA---GGCCTT-GAAACTGAACATCCTTGAATGTCTAACCAATTTGATTGCAA----------TTCTTGTTTTGC---CAATATTTT---TA-------CAAACCTAGCTTATCACCCTGAGGAA
gi|11 : atgtaataataatgagatgtttgatctcttaaatgcagatgttctataataagtactaacatgggtaatggggtttaatttgctTGTTTACACTCCATGTGACTGATT---
gi|12 : agtgttcagtctagtttgcagtaaaaagaggagatcacttcacaagaaaacttgggagtcattcagtaaaagggaccatcataaaaatcaatataaatggtgcgctgttcattgtctgattagcgtagacattctataattagtactggaagcggtaacgggaattgattggct-AA-TAAAAACTGGATTAATTTGATT--GATTGCA-A-AAAATATGAAACAACCCGAACATCGGCATCATT----T-GTATTGCGCCAATTTAGCCCCAGGAGTCAT-----CAAAAGCACA-TCATTTCT-G-TTTAATAAGGACCTTGGGACCAATGGTGCAAT--AACATGATTTAGATTG
gi|13 : ttgctctattcttaggttgctaagAGTTACAGCAACACTTGCATACAGAT-ATAGACT------GGTGCACAT--GTATATGTTTACA-TCAGTAT-GCACTATTTCATC-G-----A---TTAT-----AAGACAATGGTAACCAGTCTC-----T-GAC-----ATTA-ATTTATT---------TCCA-T-----tt
gi|16 : atagaagaaaaatgtcctccaatgtaatgctgaaaccaatttataAAAGAACCTTAACATCAGTA-----------GAATTGTGCCAATTCAGCCCCAGAAGACAT-----CAAAAGTGCGACTTTTTGT-GCTTCAA-A--------AGGACCAATGGTGCAATG--ATGTGATCTAGATTGAAtttatt
gi|17 : aTGCATATGGAA-ATAGACT------GGTGTATGT--GTACATAT----A-TCAGCGT-GTGCTGTTTTCTTAA-GAGTAATTTT-C-----ATATCATAAGTAACCAGTCTC-----CAGATT-----CT--GTTTCCT---------TCCATT-----ATACttgc
gi|19 : TCCTTTTCATTTCTCTCCAATAAAATGTGC-CTAAGAACATAGCAG----AAGCA------------------------TTTA-AAA----AA---T--CATTGGCACAAATGCTTGCATAAGAAT-ATAGACT------GGTATACAT--TTA
gi|2 : gAGA--AAAG--AAAGATTA---TGATATCCTTTTCATTTCTTCCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATATTTTTATATGCTGA-CAC-TTTTTTATAAATCACAA---TACCAGTTATACAAATGCTTGCATACGAAT-ATAATCT------TGTATACAT--GTATAATTTTACA-TCAGC-TTGCGCTATTTTATC-T-GAATA---TT-TTTT--ATTTTACTGGCAACCAGTCTC-----C-AACA---AATT--ATTTACT---------TCCT-T-----ATACAAATATTTGCTTTGAG----AATATTT-ATTTACATT--CCAGTCA-AAATAGAAGCTGATTTAATGCGATT--GAATACTGACAAAATATGAAATAACTGGAACTTGGGTAGCATT----T-GTATTGCACCAAGTCAGTCCTTGGAGGTGTTTTAACTAAAGTGTG-CCACTTGT-G-TTTAA-A--------GGGGCCTATGACGAAATG-A-CACAGTCTAGATCGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAA---ACATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAGaaa
gi|20 : -AA-TGAAGGTGGGATAAATTTTATTACGATTACGGA-AAAATATGAAACAACCAGAACATCAATAACATT----T-ATACGGCATCAAATTGGCCAAGGAAGTTGT-----CAAAAGg
gi|21 : gcgagTATCT-ATTTTTATT--T--GACAGAA-TAAAAGCTGTATCAATTTGATT--AATTACGGA-ATGATATGAAATAAATGGAACAT-----ACATT----T-G
gi|22 : attgcaaTACACAAATGCTTACATA-GTAC-ATAGTCT------GATGTACAT--GCCTTATTTTA-A---AG--------TATTTT-T------------TT-T-----ATTTTATCCCTAACCAATTGC-----C-AACT---ATTG--ATTTaaatatcgtatca
gi|3 : --G-TTTATTTT--TATTCTTGCAACAGA--AAAA--AAAAAAT----TGAG---CTTTTAATTTTCCGCCAAT-----------TTA--ATGT-GCAA----A----TAGTTTTGTATTCCAA-CACCTTTTT-ATAAATTACAAAATCATCAGTTACACAAATACTTGCATACAGAT-A------------------CAT--GTATATTTTT--------------GCCGTTTTAAC-GAGAG-A---TG-C-----A-------GTTAAGCAGTCTC-----T-GGTGGTTAATT---TTTATT---------TCCA-TTTT--ATATGATTTTTTGCCTCGGGGAGCATTCTAT-CTTTA-ATGA-CCTGTCAGAA-GACAAACTGGATTAGTTCAATT--GATTATGGG-AAAA-ATTAAATAACCCAAACATCGGTAA-ATT----TCATATTATGCCGATTCAGCCTCGGGAATTGG-----CAAAAATGTG-CCATTTGT-G-TTTAA-A--------ATGGCCAGTGTTG-------------TTTAGATTGAACAC
gi|4 : gATATTTACACTCCATGTGACAA------TTAA---AGTACTG-AACTAGT-AAACAGACCTT-AAA--TGATTGTTC------GT-TTAGCAATTTGTATGTAG----------C----GTCTAT------TT-TTTT---TG-------GAAACCTACCTCATC-CCCGTGAGAA--CACCGCAGTTGCC---ATTTTA--TTGCCTAG--TTATTTT--CAT
gi|5 : agtgttcaatctaggattgcagtaaagggaggaggcatccagaccacttcacatgaaaacttaggagtcattcagaaaaaggggccatcataaaaaacaatataaatgatgagctgttcattgtctgattaccgtagacattctataattagtactggaaacggtaacaggatttgattggctgattactccTTGCATACAAATTATAGACTTTTGTAAGTGTGCTT--GTATATTTTGA-AATCAGT-GAGCACTATTTTATC-G-AAGTAATTTT-T-----AATTAATTGGCAATCAGCTCC-----C-AACT---A-TT--ATTTTTTAATTTAGTTTCCA-TCATATATACAAATATT--------------------------CATT--TTGGGCA------------GGATTCATATGATT--GCCAAC--A-AAAACACGAAATAACATGAACATCAATAGCATTAATTT-ATATTGCACCAATTTGGCCCCAAGAATTGT-----CTAAAGTGAG-CCATTTACAA-TTTAA-A---------TGGCCAAC----CAGTG--ATGTGGTCTAAATTGAACACTGTTTGAatt
gi|7 : TGTATGCTGA-CACCTTTTT-ATAAATCACAG---TTTCAATTACACAGATGCATG--------T-ATAGTTT----------TACATCAGCATAATT----A-T---------GCTATTCTATC-A-AAGTA---TT-TTTTTCATTTTATCAATAACCAGTTTCTTGAAC-TATT---AATTTAATTCAAT---------TTAA-T-----GCATAATTTTTTGCTTT-----------TTT-TTTTA-ATTGACCAGCCA-AA--AAAATCCGGATTAATGTGACC--GCTTATGGA-AAAATATCAAATAACCCAAACATCG
gi|8 : TTTGATTGTAAAGACAAAGTTT----GTTTTTCAGATGTT-TTGT---TA-------CAAACCTGACTCGTCCCCCTG-AGGAATC-CC---TTTA-CAAAG-TTTAGTTTGCC----T---TTTT--TA---TAACAACAGATGACAT--ATAAAATAAGCTGATATTCTTTTTATTTTCCACCAATATAATG-TAACATAAAAAATGGCTGTTCTAAGCATAATATTGTATGTCGA-CACC-TTTTTATAAATCAAAA---C-TCAGTTACACAAATACTTG
gi|9 : tgTGTTTACACTCCATGTGACTGGTTTTGTTAA---AGAACTGTA-CT-----G---GACTTTGAAA--GGAGCGTTC------AT-TAGCCACTTTGACTGTAA----------T----GTT-------TGTT-TTTCAGATGGAATTAACAAACCTGGATCAACACCCTAAAGAATTC-CTTCAGTTG-T---G-GTCA--TTGTTTAG-TTTGTTTT----TT-TAGCAATAGA--GAGGACAAGGAAGC---TAATATTCTTTTCAATTCCC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CTGGAAGTGAATCCTAGTGTACAATCTAGGATTGCAGTTAAGAGGGCCATTAGTGTGCCAAAGAAAAAAGGGGGCCATCATAAAAAACATTACTTATAAATGATGATGAGATGTTTGGTGTCTGAAAAGCATCTATATACATTCTATAATTGGTACGACCAGGGGTAATGGGGTGTGTATGCTTGTTAACACTCAAAGTGACTAGTTTTGTCAATGTACTGCACTGTTAAGCATTTCTTGAGAAATTC
Unaligned ( gi|14 ): TGTTCAATTTGGGATTTATTCATCTGGCCCCTTCAGAGGAAAACAGGGACAATTCCTTGAAAAATGAACTCATCATAATGATCATTATTTTAAATGATGATGTCATTCAGATGTTCAATGATTAAAAACAGTAGAAATTTTATAATTA
Unaligned ( gi|15 ): GTCATATTAAAAACTTGCATAGATGCAGTGTTCACTCTAGGATTTCAGCAAAGGGGTCAACTGGACACAGGGGGGTCACTTAGAAGAAAAGGGGTCATCATAATAAAGCATTATTAATT
Unaligned ( gi|18 ): CATCCTGTATATTGACTGGTCTACAGGTTTATTTATAAATAAATGAGCACGATTATATCGATAAACAGGTGGTAACTAGTCCCTTGCATGTAATTTATTTCCGTTATATATG
Unaligned ( gi|23 ): TCCATGTGACTGATTATAACAGACATAATATAATTAGTACTAGAAGTAGATACGGGATTTGATTGGCTTGTTTACTCCATGTTTATGTGA
Unaligned ( gi|24 ): CTGGCCACATACGAGAAGTCTATAGAACGTAAAGACCAGGTAATCATTCATAAAGATGAAT
Unaligned ( gi|25 ): CTTGCATATTGACTGGTGTATATTTTATTTACAAATTAGCGAACGCGATTTCATCGATAA
Alignments
lowQualScore : 222222 111 11 1 11 222222 1 55555555555555555555555555 222222222222 111 1111 1 2222 1 1111 2 11 11 1111 1111 1111 1 11111 1111111 44444444 33333333333333333333 11 222222222222222 33333 11 3333333333333333 11111 11111 1 1111 22222 222222222 111 4444444444 11 222 1 1
lowQualScore : 888888 777 3 66 3 3 33 0 33 1 888888 0 1 0 1 22222222222222222222222222 8 777777777777 5 555 6666 2 7777 0 3 0 5555 0 11 11 9999 0 1 11 3333 6 3 7777 0 0 3 1 3 6 5 5 00000 2 0 4 4 5555555 0 5 4 0 00000000 0 0 66666666666666666666 33 1 2 11 777777777777777 5 5 44444 8 1 11 5555555555555555 9 88888 1 11111 0 0 1 66 1 0 0 4 0 2 0000 5 1 4 1 88888 1 2 6 6 6 6 777777777 444 0 1 1 0000000000 1 88 111 1 5 1 1 22 5 1 1 1
lowQualScore : ...... ... . .. . . .. . .. . ...... . . . . .......................... . ............ . ... .... . .... . . . .... . .. .. .... . . .. .... . . .... . . . . . . . . ..... . . . . ....... . . . . ........ . . .................... .. . . .. ............... . . ..... . . .. ................ . ..... . ..... . . . .. . . . . . . .... . . . . ..... . . . . . . ......... ... . . . .......... . .. ... . . . . .. . . . .
lowQualScore : 444444 555 2 00 2 5 55 0 88 0 888888 0 0 8 4 88888888888888888888888888 0 444444444444 6 222 8888 8 8888 0 2 8 8888 0 00 00 6666 8 0 88 6666 4 8 0000 8 8 2 0 7 7 2 5 44444 9 9 4 1 7777777 9 9 5 1 99999999 2 1 55555555555555555555 99 0 2 99 555555555555555 7 7 33333 0 4 88 8888888888888888 3 55555 0 11111 8 2 0 99 4 0 9 7 1 5 6666 0 4 0 4 66666 0 2 7 7 7 7 888888888 555 7 0 0 0000000000 0 00 555 0 5 0 0 00 5 0 0 0
consensus : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGA-CACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
Reference ( family-1721 ) : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACAGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTG-CGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGA-CACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGTGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
gi|1 : ATGTTTACACTCCATGTGACTG------TTAA---AGTACTGAACTAGTAAATAGACCTT-AAA--TGATCATTC------GT-TAAGCAGTTTGTTTGTAA----------C----GTTTTTT---TGTT-TTTT---TG-------CCAACCTAGCTGATCACCC--GGGAAACA-CCACAGTTGCCATTT-CATTGCC-AATTTATTTTAATATT-TAACAATAGA--AAAG--AAAGAATA---TGATATCATTTTCATTTCTTCCCAATAAAATG-GCACTTAAAATATAGCAG----AAGCATAGTTTTGTATGCGGACCATTTTTTTTATAAATCACAA---TACTAGTTATACAAATGCTTGCATACGGAT-ATAATCT------TGTATACATGTATAATTTTACATCAGCT----T-GCGCTATTTTATC-T-GAATA---TC-T-----ATTTTATCAGCAACCAGTCTCC--AAC---AA--ATT-----ATTTT-TTTCCG-T-----ACACA-AATATTC-GCTTTGAG----ATTATTTCATTTACATT--CCAGTCA-AG-TAGAGGCTGATTTAATGCGATT--GATTACGGACAAAACATGAAATACCTGGAACATTGGTGGCATT----T-GTATTGCACCAATTCAGTCCCTGGAGTTGTTTTAACTAAAGTGTG-CCACTAAT-GTTT-AA-A--------GGGGCCAATAATGCAATGCCACATTCTAGATCGAACACTGGTAGAAAATTATTACAATA---------TTTTTTTTCTTCATTTTTTTTCATTTTATAGACCAAAACAAAATTATATGTGTGGTTACCGTTTCCTGACCGACCCTATTTGTTCCAAGC-ACCCCAAGCATTTTATTGCATGATTTTCGTTATCTTCTATGGGAACTCA-TTTTATGTTATGCGATCAACCTGAATAGAGAG
gi|10 : TGTTTACACTCAATGTAACTGGTT---TTATTTTAGT--T---CTAGTTAA--GGCCTT-GAAACTGAACATCCTTGAATGTCTAACCAATTTGATTGCAA----------TTCTTGTTTTGC---CAATATTTT---TA-------CAAACCTAGCTTATCACCCTGAGGAA
gi|11 : atgtaataataatgagatgtttgatctcttaaatgcagatgttctataataagtactaacatgggtaatggggtttaatttgctTGTTTACACTCCATGTGACTGATT---
gi|12 : agtgttcagtctagtttgcagtaaaaagaggagatcacttcacaagaaaacttgggagtcattcagtaaaagggaccatcataaaaatcaatataaatggtgcgctgttcattgtctgattagcgtagacattctataattagtactggaagcggtaacgggaattgattggct-AA-TAAAAACTGGATTAATTTGATT--GATTGCA-A-AAAATATGAAACAACCCGAACATCGGCATCATT----T-GTATTGCGCCAATTTAGCCCCAGGAGTCAT-----CAAAAGCACA-TCATTTCT-GTTT-AATAAGGACCTTGGGACCAATGGTGCAATAACATGATTTAGATTG
gi|13 : ttgctctattcttaggttgctaag---TATAAGTTACAGCAACACTTGCATACAGAT-ATAGACT------GGTGCACATGTATATGTTTACATCAGTA----T-GCACTATTTCATC-G-----A---TTAT-----AAGACAATGGTAACCAGTCTCT--GAC-------ATTA----ATTTA-TTTCCA-T-----tt
gi|16 : atagaagaaaaatgtcctccaatgtaatgctgaaaccaattAAAGAACCTTAACATCAGTAG-A----------ATTGTGCCAATTCAGCCCCAGAAGACAT-----CAAAAGTGCGACTTTTTGT-GCTTCAA-A--------AGGACCAATGGTGCAATGATGTGATCTAGATTGAAtttatt
gi|17 : aTGCATATGGAA-ATAGACT------GGTGTATGTGTACA----TATATCAGCG----T-GTGCTGTTTTCTTAA-GAGTAATTTT-C-----ATATCATAAGTAACCAGTCTCCA-GAT---T----CT-----GTTTC-CTTCCATT-----ATACttgc
gi|19 : TCCTTTTCATTTCTCTCCAATAAAATGTGC-CTAAGAACATAGCAG----AAGCA------------------------TTTAAAAA----------ATCATTGGCACAAATGCTTGCATAAGAAT-ATAGACT------GGTATACATTTA
gi|2 : gAGA--AAAG--AAAGATTA---TGATATCCTTTTCATTTCTTCCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATATTTTTATATGCTGA-CAC-TTTTTTATAAATCACAA---TACCAGTTATACAAATGCTTGCATACGAAT-ATAATCT------TGTATACATGTATAATTTTACATCAGC-----TTGCGCTATTTTATC-T-GAATA---TT-TTTT--ATTTTACTGGCAACCAGTCTCC--AAC---AA--ATT-----ATTTA-CTTCCT-T-----ATACA-AATATTT-GCTTTGAG----AATATTT-ATTTACATT--CCAGTCA-AAATAGAAGCTGATTTAATGCGATT--GAATACTGACAAAATATGAAATAACTGGAACTTGGGTAGCATT----T-GTATTGCACCAAGTCAGTCCTTGGAGGTGTTTTAACTAAAGTGTG-CCACTTGT-GTTT-AA-A--------GGGGCCTATGACGAAATGACACAGTCTAGATCGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAAA---CATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAGaaa
gi|20 : -AA-TGAAGGTGGGATAAATTTTATTACGATTACGGA-AAAATATGAAACAACCAGAACATCAATAACATT----T-ATACGGCATCAAATTGGCCAAGGAAGTTGT-----CAAAAGg
gi|21 : gcgagTATCT-ATTTTTATT--T--GACAGAA-TAAAAGCTGTATCAATTTGATT--AATTACGGA-ATGATATGAAATAAATGGAACAT-----ACATT----T-G
gi|22 : attgcaaTACACAAATGCTTACATA-GTAC-ATAGTCT------GATGTACATGCCTTATTTTA-A--AG------------TATTTT-T------------TT-T-----ATTTTATCCCTAACCAATTGCC--AAC---TA--TTG-----ATTTaaatatcgtatca
gi|3 : GTTTATTTT--TATTCTTGCAACAGA--AAAA--AAAAAAT----TGAG---CTTTTAATTTTCCGCCAAT-----------TTA--ATGT-GCAA----A----TAGTTTTGTATTCCAA-CACCTTTTT-ATAAATTACAAAATCATCAGTTACACAAATACTTGCATACAGAT-A------------------CATGTATATTTTT-----------------GCCGTTTTAAC-GAGAG-A---TG-C-----A-------GTTAAGCAGTCTCT--GGTGGTTA--ATT------TTTA-TTTCCA-TTTT--ATATG-ATTTTTT-GCCTCGGGGAGCATTCTAT-CTTTA-ATGA-CCTGTCAGAA-GACAAACTGGATTAGTTCAATT--GATTATGGG-AAAA-ATTAAATAACCCAAACATCGGTAA-ATT----TCATATTATGCCGATTCAGCCTCGGGAATTGG-----CAAAAATGTG-CCATTTGT-GTTT-AA-A--------ATGGCCAGT-----------GTTGTTTAGATTGAACAC
gi|4 : gATATTTACACTCCATGTGACAA------TTAA---AGTACTGAACTAGTAAACAGACCTT-AAA--TGATTGTTC------GT-TTAGCAATTTGTATGTAG----------C----GTCTAT------TT-TTTT---TG-------GAAACCTACCTCATC-CCCGTGAGAA--CACCGCAGTTGCCATTT-TATTGCCTAG-TTATTTT--CAT
gi|5 : agtgttcaatctaggattgcagtaaagggaggaggcatccagaccacttcacatgaaaacttaggagtcattcagaaaaaggggccatcataaaaaacaatataaatgatgagctgttcattgtctgattaccgtagacattctataattagtactggaaacggtaacaggatttgattggctgattactccTTGCATACAAATTATAGACTTTTGTAAGTGTGCTTGTATATTTTGAAATCAGT-----GAGCACTATTTTATC-G-AAGTAATTTT-T-----AATTAATTGGCAATCAGCTCCC--AAC---TATTATTTTTTAATTTAGTTTCCA-TCATATATACA-AATATT---------------------------CATT--TTGGGCA------------GGATTCATATGATT--GCCAAC--A-AAAACACGAAATAACATGAACATCAATAGCATTAATTT-ATATTGCACCAATTTGGCCCCAAGAATTGT-----CTAAAGTGAG-CCATTTACAATTT-AA-A---------TGGCCAAC----CAGTGATGTGGTCTAAATTGAACACTGTTTGAatt
gi|7 : TGTATGCTGA-CACCTTTTT-ATAAATCACAG---TTTCAATTACACAGATGC---------------------------------ATGTATAGTTTTACATCAGCATAATT-ATGCTATTCTATC-A-AAGTA---TT-TTTTTCATTTTATCAATAACCAGTTTCTTGAAC---TA--TTA-----ATTTA-ATTCAA-TTTA--ATGCATAATTTTTTGCTTT-----------TTT-TTTTA-ATTGACCAGCCA-AA--AAAATCCGGATTAATGTGACC--GCTTATGGA-AAAATATCAAATAACCCAAACATCG
gi|8 : TTTGATTGTAAAGACAAAGTTT----GTTTTTCAGATGTT-TTGT---TA-------CAAACCTGACTCGTCCCCCTG-AGGAATC-CC----------TTTACAAAGTTTAGTTTGCCTT--TTTTATAACAACAGATGACAT--ATAAAATAAGCTGATATTCTTTTTATTTTCCACCAATATAATG-TAACATAAAAAATGGCTGTTCTAAGCATAATATTGTATGTCGA-CACCTTTTT-ATAAATCAAAA---C-TCAGTTACACAAATACTTG
gi|9 : tgTGTTTACACTCCATGTGACTGGTTTTGTTAA---AGAACTGTACT-------GGACTTTGAAA--GGAGCGTTC------AT-TAGCCACTTTGACTGTAA----------T----GTTT-------GTT-TTTCAGATGGAATTAACAAACCTGGATCAACACCCTAAAGAATTC-CTTCAGTTG-TG-GT-CATTGTTTAGTTTGTTTT----TT-TAGCAATAGA--GAGGACAAGGAAGC---TAATATTCTTTTCAATTCCC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CTGGAAGTGAATCCTAGTGTACAATCTAGGATTGCAGTTAAGAGGGCCATTAGTGTGCCAAAGAAAAAAGGGGGCCATCATAAAAAACATTACTTATAAATGATGATGAGATGTTTGGTGTCTGAAAAGCATCTATATACATTCTATAATTGGTACGACCAGGGGTAATGGGGTGTGTATGCTTGTTAACACTCAAAGTGACTAGTTTTGTCAATGTACTGCACTGTTAAGCATTTCTTGAGAAATTC
Unaligned ( gi|14 ): TGTTCAATTTGGGATTTATTCATCTGGCCCCTTCAGAGGAAAACAGGGACAATTCCTTGAAAAATGAACTCATCATAATGATCATTATTTTAAATGATGATGTCATTCAGATGTTCAATGATTAAAAACAGTAGAAATTTTATAATTA
Unaligned ( gi|15 ): GTCATATTAAAAACTTGCATAGATGCAGTGTTCACTCTAGGATTTCAGCAAAGGGGTCAACTGGACACAGGGGGGTCACTTAGAAGAAAAGGGGTCATCATAATAAAGCATTATTAATT
Unaligned ( gi|18 ): CATCCTGTATATTGACTGGTCTACAGGTTTATTTATAAATAAATGAGCACGATTATATCGATAAACAGGTGGTAACTAGTCCCTTGCATGTAATTTATTTCCGTTATATATG
Unaligned ( gi|23 ): TCCATGTGACTGATTATAACAGACATAATATAATTAGTACTAGAAGTAGATACGGGATTTGATTGGCTTGTTTACTCCATGTTTATGTGA
Unaligned ( gi|24 ): CTGGCCACATACGAGAAGTCTATAGAACGTAAAGACCAGGTAATCATTCATAAAGATGAAT
Unaligned ( gi|25 ): CTTGCATATTGACTGGTGTATATTTTATTTACAAATTAGCGAACGCGATTTCATCGATAA
Alignments
lowQualScore : 222222 111 11 1 11 222222 1 55555555555555555555555555 222222222222 111 1111 1 1111 1 1111 2 11 11 1111 1111 1111 11111 1111111 44444444 33333333333333333333 11 222222222222222 33333 11 3333333333333333 11111 11111 1 1111 22222 222222222 333333333 11 222 1 1
lowQualScore : 888888 777 3 66 3 3 77 0 33 1 888888 0 1 0 1 22222222222222222222222222 8 777777777777 5 555 6666 2 0000 0 3 0 5555 0 11 11 9999 0 1 11 3333 6 3 7777 0 0 3 1 3 6 88 7 00000 2 0 4 4 5555555 0 5 4 0 00000000 0 0 66666666666666666666 33 1 2 11 777777777777777 5 5 44444 8 1 11 5555555555555555 9 88888 1 11111 0 0 1 66 1 0 0 4 0 2 0000 5 1 4 1 88888 1 2 6 6 6 6 777777777 44 2 44 0 1 1 1 999999999 1 88 111 1 5 1 1 22 5 1 1 1
lowQualScore : ...... ... . .. . . .. . .. . ...... . . . . .......................... . ............ . ... .... . .... . . . .... . .. .. .... . . .. .... . . .... . . . . . . .. . ..... . . . . ....... . . . . ........ . . .................... .. . . .. ............... . . ..... . . .. ................ . ..... . ..... . . . .. . . . . . . .... . . . . ..... . . . . . . ......... .. . .. . . . . ......... . .. ... . . . . .. . . . .
lowQualScore : 444444 555 2 00 2 5 00 0 88 0 888888 0 0 8 4 88888888888888888888888888 0 444444444444 6 222 8888 8 2222 0 2 8 8888 0 00 00 6666 8 0 88 6666 4 8 0000 8 8 2 0 7 7 33 3 44444 9 9 4 1 7777777 9 9 5 1 99999999 2 1 55555555555555555555 99 0 2 99 555555555555555 7 7 33333 0 4 88 8888888888888888 3 55555 0 11111 8 2 0 99 4 0 9 7 1 5 6666 0 4 0 4 66666 0 2 7 7 7 7 888888888 77 5 33 7 0 0 0 000000000 0 00 555 0 5 0 0 00 5 0 0 0
consensus : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
Reference ( family-1721 ) : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
gi|1 : ATGTTTACACTCCATGTGACTG------TTAA---AGTACTGAACTAGTAAATAGACCTT-AAA--TGATCATTC------GT-TAAGCAGTTTGTTTGTAA----------C----GTTTTTT---TGTT-TTTT---TG-------CCAACCTAGCTGATCACCC--GGGAAACA-CCACAGTTGCCATTT-CATTGCC-AATTTATTTTAATATT-TAACAATAGA--AAAG--AAAGAATA---TGATATCATTTTCATTTCTTCCCAATAAAATG-GCACTTAAAATATAGCAG----AAGCATAGTTTTGTATGCGGACCATTTTTTTTATAAATCACAA---TACTAGTTATACAAATGCTTGCATACGGAT-ATAATCT------TGTATACATGTATAATTTTACATCAGC-----TTGCGCTATTTTATC-T-GAATA---TC-T-----ATTTTATCAGCAACCAGTCTCC--AAC---AA--ATT-----ATTTT-TTTCCG-T-----ACACA-AATATTC-GCTTTGAG----ATTATTTCATTTACATT--CCAGTCA-AG-TAGAGGCTGATTTAATGCGATT--GATTACGGACAAAACATGAAATACCTGGAACATTGGTGGCATT----T-GTATTGCACCAATTCAGTCCCTGGAGTTGTTTTAACTAAAGTGTG-CCACTAAT-GTTT-AA-A--------GGGGCCAATAATGCAATGCCACATTCTAGATCGAACACTGGTAGAAAATTATTACAATATTTT---------TTTTCTTCATTTTTTTTCATTTTATAGACCAAAACAAAATTATATGTGTGGTTACCGTTTCCTGACCGACCCTATTTGTTCCAAGC-ACCCCAAGCATTTTATTGCATGATTTTCGTTATCTTCTATGGGAACTCA-TTTTATGTTATGCGATCAACCTGAATAGAGAG
gi|10 : TGTTTACACTCAATGTAACTGGTT---TTATTTTAGT--T---CTAGTTAA--GGCCTT-GAAACTGAACATCCTTGAATGTCTAACCAATTTGATTGCAA----------TTCTTGTTTTGC---CAATATTTT---TA-------CAAACCTAGCTTATCACCCTGAGGAA
gi|11 : atgtaataataatgagatgtttgatctcttaaatgcagatgttctataataagtactaacatgggtaatggggtttaatttgctTGTTTACACTCCATGTGACTGATT---
gi|12 : agtgttcagtctagtttgcagtaaaaagaggagatcacttcacaagaaaacttgggagtcattcagtaaaagggaccatcataaaaatcaatataaatggtgcgctgttcattgtctgattagcgtagacattctataattagtactggaagcggtaacgggaattgattggct-AA-TAAAAACTGGATTAATTTGATT--GATTGCA-A-AAAATATGAAACAACCCGAACATCGGCATCATT----T-GTATTGCGCCAATTTAGCCCCAGGAGTCAT-----CAAAAGCACA-TCATTTCT-GTTT-AATAAGGACCTTGGGACCAATGGTGCAATAACATGATTTAGATTG
gi|13 : ttgctctattcttaggttgctaag---TATAAGTTACAGCAACACTTGCATACAGAT-ATAGACT------GGTGCACATGTATATGTTTACATCAGTA----T-GCACTATTTCATC-G-----A---TTAT-----AAGACAATGGTAACCAGTCTCT--GAC-------ATTA----ATTTA-TTTCCA-T-----tt
gi|16 : atagaagaaaaatgtcctccaatgtaatgctgaaaccaattAAAGAACCTTAACATCAGTAG-A----------ATTGTGCCAATTCAGCCCCAGAAGACAT-----CAAAAGTGCGACTTTTTGT-GCTTCAA-A--------AGGACCAATGGTGCAATGATGTGATCTAGATTGAAtttatt
gi|17 : aTGCATATGGAA-ATAGACT------GGTGTATGTGTACA----TATATCAGCG----T-GTGCTGTTTTCTTAA-GAGTAATTTT-C-----ATATCATAAGTAACCAGTCTCCA-GAT---T----CT-----GTTTC-CTTCCATT-----ATACttgc
gi|19 : TCCTTTTCATTTCTCTCCAATAAAATGTGC-CTAAGAACATAGCAG----AAGCA------------------------TTTAAAAA----------ATCATTGGCACAAATGCTTGCATAAGAAT-ATAGACT------GGTATACATTTA
gi|2 : gAGA--AAAG--AAAGATTA---TGATATCCTTTTCATTTCTTCCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATATTTTTATATGCTGAC-AC-TTTTTTATAAATCACAA---TACCAGTTATACAAATGCTTGCATACGAAT-ATAATCT------TGTATACATGTATAATTTTACATCAGC-----TTGCGCTATTTTATC-T-GAATA---TT-TTTT--ATTTTACTGGCAACCAGTCTCC--AAC---AA--ATT-----ATTTA-CTTCCT-T-----ATACA-AATATTT-GCTTTGAG----AATATTT-ATTTACATT--CCAGTCA-AAATAGAAGCTGATTTAATGCGATT--GAATACTGACAAAATATGAAATAACTGGAACTTGGGTAGCATT----T-GTATTGCACCAAGTCAGTCCTTGGAGGTGTTTTAACTAAAGTGTG-CCACTTGT-GTTT-AA-A--------GGGGCCTATGACGAAATGACACAGTCTAGATCGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAAA---CATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAGaaa
gi|20 : -AA-TGAAGGTGGGATAAATTTTATTACGATTACGGA-AAAATATGAAACAACCAGAACATCAATAACATT----T-ATACGGCATCAAATTGGCCAAGGAAGTTGT-----CAAAAGg
gi|21 : gcgagTATCT-ATTTTTATT--T--GACAGAA-TAAAAGCTGTATCAATTTGATT--AATTACGGA-ATGATATGAAATAAATGGAACAT-----ACATT----T-G
gi|22 : attgcaaTACACAAATGCTTACATA-GTAC-ATAGTCT------GATGTACATGCCTTATTTTA-A--AG------------TATTTT-T------------TT-T-----ATTTTATCCCTAACCAATTGCC--AAC---TA--TTG-----ATTTaaatatcgtatca
gi|3 : GTTTATTTT--TATTCTTGCAACAGA--AAAA--AAAAAAT----TGAG---CTTTTAATTTTCCGCCAAT-----------TTA--ATGT-GCAA----A----TAGTTTTGTATTCCAAC-ACCTTTTT-ATAAATTACAAAATCATCAGTTACACAAATACTTGCATACAGAT-A------------------CATGTATATTTTT-----------------GCCGTTTTAAC-GAGAG-A---TG-C-----A-------GTTAAGCAGTCTCT--GGTGGTTA--ATT------TTTA-TTTCCA-TTTT--ATATG-ATTTTTT-GCCTCGGGGAGCATTCTAT-CTTTA-ATGA-CCTGTCAGAA-GACAAACTGGATTAGTTCAATT--GATTATGGG-AAAA-ATTAAATAACCCAAACATCGGTAA-ATT----TCATATTATGCCGATTCAGCCTCGGGAATTGG-----CAAAAATGTG-CCATTTGT-GTTT-AA-A--------ATGGCCAGTGTT-----------GTTTAGATTGAACAC
gi|4 : gATATTTACACTCCATGTGACAA------TTAA---AGTACTGAACTAGTAAACAGACCTT-AAA--TGATTGTTC------GT-TTAGCAATTTGTATGTAG----------C----GTCTAT------TT-TTTT---TG-------GAAACCTACCTCATC-CCCGTGAGAA--CACCGCAGTTGCCATTT-TATTGCCTAG-TTATTTT--CAT
gi|5 : agtgttcaatctaggattgcagtaaagggaggaggcatccagaccacttcacatgaaaacttaggagtcattcagaaaaaggggccatcataaaaaacaatataaatgatgagctgttcattgtctgattaccgtagacattctataattagtactggaaacggtaacaggatttgattggctgattactccTTGCATACAAATTATAGACTTTTGTAAGTGTGCTTGTATATTTTGAAATCAGT-----GAGCACTATTTTATC-G-AAGTAATTTT-T-----AATTAATTGGCAATCAGCTCCC--AAC---TATTATTTTTTAATTTAGTTTCCA-TCATATATACA-AATATT---------------------------CATT--TTGGGCA------------GGATTCATATGATT--GCCAAC--A-AAAACACGAAATAACATGAACATCAATAGCATTAATTT-ATATTGCACCAATTTGGCCCCAAGAATTGT-----CTAAAGTGAG-CCATTTACAATTT-AA-A---------TGGCCAAC----CAGTGATGTGGTCTAAATTGAACACTGTTTGAatt
gi|7 : TGTATGCTGAC-ACCTTTTT-ATAAATCACAG---TTTCAATTACACAGATGC---------------------------------ATGTATAGTTTTACATCAGCATAATT-ATGCTATTCTATC-A-AAGTA---TT-TTTTTCATTTTATCAATAACCAGTTTCTTGAAC---TA--TTA-----ATTTA-ATTCAA-TTTA--ATGCATAATTTTTTGCTTT-----------TTT-TTTTA-ATTGACCAGCCA-AA--AAAATCCGGATTAATGTGACC--GCTTATGGA-AAAATATCAAATAACCCAAACATCG
gi|8 : TTTGATTGTAAAGACAAAGTTT----GTTTTTCAGATGTT-TTGT---TA-------CAAACCTGACTCGTCCCCCTG-AGGAATC-CC----------TTTACAAAGTTTAGTTTGCCTT--TTTTATAACAACAGATGACAT--ATAAAATAAGCTGATATTCTTTTTATTTTCCACCAATATAATG-TAACATAAAAAATGGCTGTTCTAAGCATAATATTGTATGTCGAC-ACC-TTTTTATAAATCAAAA---C-TCAGTTACACAAATACTTG
gi|9 : tgTGTTTACACTCCATGTGACTGGTTTTGTTAA---AGAACTGTACT-------GGACTTTGAAA--GGAGCGTTC------AT-TAGCCACTTTGACTGTAA----------T----GTTT-------GTT-TTTCAGATGGAATTAACAAACCTGGATCAACACCCTAAAGAATTC-CTTCAGTTGTGG--T-CATTGTTTAGTTTGTTTT----TT-TAGCAATAGA--GAGGACAAGGAAGC---TAATATTCTTTTCAATTCCC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CTGGAAGTGAATCCTAGTGTACAATCTAGGATTGCAGTTAAGAGGGCCATTAGTGTGCCAAAGAAAAAAGGGGGCCATCATAAAAAACATTACTTATAAATGATGATGAGATGTTTGGTGTCTGAAAAGCATCTATATACATTCTATAATTGGTACGACCAGGGGTAATGGGGTGTGTATGCTTGTTAACACTCAAAGTGACTAGTTTTGTCAATGTACTGCACTGTTAAGCATTTCTTGAGAAATTC
Unaligned ( gi|14 ): TGTTCAATTTGGGATTTATTCATCTGGCCCCTTCAGAGGAAAACAGGGACAATTCCTTGAAAAATGAACTCATCATAATGATCATTATTTTAAATGATGATGTCATTCAGATGTTCAATGATTAAAAACAGTAGAAATTTTATAATTA
Unaligned ( gi|15 ): GTCATATTAAAAACTTGCATAGATGCAGTGTTCACTCTAGGATTTCAGCAAAGGGGTCAACTGGACACAGGGGGGTCACTTAGAAGAAAAGGGGTCATCATAATAAAGCATTATTAATT
Unaligned ( gi|18 ): CATCCTGTATATTGACTGGTCTACAGGTTTATTTATAAATAAATGAGCACGATTATATCGATAAACAGGTGGTAACTAGTCCCTTGCATGTAATTTATTTCCGTTATATATG
Unaligned ( gi|23 ): TCCATGTGACTGATTATAACAGACATAATATAATTAGTACTAGAAGTAGATACGGGATTTGATTGGCTTGTTTACTCCATGTTTATGTGA
Unaligned ( gi|24 ): CTGGCCACATACGAGAAGTCTATAGAACGTAAAGACCAGGTAATCATTCATAAAGATGAAT
Unaligned ( gi|25 ): CTTGCATATTGACTGGTGTATATTTTATTTACAAATTAGCGAACGCGATTTCATCGATAA
Alignments
lowQualScore : 222222 111 11 1 11 222222 1 55555555555555555555555555 222222222222 111 1111 1 1111 1 1111 2 11 11 1111 1111 1111 11111 1111111 44444444 33333333333333333333 11 222222222222222 33333 11 3333333333333333 11111 11111 1 1111 22222 222222222 333333333 11 222 1 1
lowQualScore : 888888 777 3 66 3 3 77 0 33 1 888888 0 1 0 1 22222222222222222222222222 8 777777777777 5 555 6666 2 0000 0 3 0 5555 0 11 11 9999 0 1 11 3333 6 3 7777 0 0 3 1 3 6 88 7 00000 2 0 4 4 5555555 0 5 4 0 00000000 0 0 66666666666666666666 33 1 2 11 777777777777777 5 5 44444 8 1 11 5555555555555555 9 88888 1 11111 0 0 1 66 1 0 0 4 0 2 0000 5 1 4 1 88888 1 2 6 6 6 6 777777777 44 2 44 0 1 1 1 999999999 1 88 111 1 5 1 1 22 5 1 1 1
lowQualScore : ...... ... . .. . . .. . .. . ...... . . . . .......................... . ............ . ... .... . .... . . . .... . .. .. .... . . .. .... . . .... . . . . . . .. . ..... . . . . ....... . . . . ........ . . .................... .. . . .. ............... . . ..... . . .. ................ . ..... . ..... . . . .. . . . . . . .... . . . . ..... . . . . . . ......... .. . .. . . . . ......... . .. ... . . . . .. . . . .
lowQualScore : 444444 555 2 00 2 5 00 0 88 0 888888 0 0 8 4 88888888888888888888888888 0 444444444444 6 222 8888 8 2222 0 2 8 8888 0 00 00 6666 8 0 88 6666 4 8 0000 8 8 2 0 7 7 33 3 44444 9 9 4 1 7777777 9 9 5 1 99999999 2 1 55555555555555555555 99 0 2 99 555555555555555 7 7 33333 0 4 88 8888888888888888 3 55555 0 11111 8 2 0 99 4 0 9 7 1 5 6666 0 4 0 4 66666 0 2 7 7 7 7 888888888 77 5 33 7 0 0 0 000000000 0 00 555 0 5 0 0 00 5 0 0 0
consensus : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
Reference ( family-1721 ) : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
gi|1 : ATGTTTACACTCCATGTGACTG------TTAA---AGTACTGAACTAGTAAATAGACCTT-AAA--TGATCATTC------GT-TAAGCAGTTTGTTTGTAA----------C----GTTTTTT---TGTT-TTTT---TG-------CCAACCTAGCTGATCACCC--GGGAAACA-CCACAGTTGCCATTT-CATTGCC-AATTTATTTTAATATT-TAACAATAGA--AAAG--AAAGAATA---TGATATCATTTTCATTTCTTCCCAATAAAATG-GCACTTAAAATATAGCAG----AAGCATAGTTTTGTATGCGGACCATTTTTTTTATAAATCACAA---TACTAGTTATACAAATGCTTGCATACGGAT-ATAATCT------TGTATACATGTATAATTTTACATCAGC-----TTGCGCTATTTTATC-T-GAATA---TC-T-----ATTTTATCAGCAACCAGTCTCC--AAC---AA--ATT-----ATTTT-TTTCCG-T-----ACACA-AATATTC-GCTTTGAG----ATTATTTCATTTACATT--CCAGTCA-AG-TAGAGGCTGATTTAATGCGATT--GATTACGGACAAAACATGAAATACCTGGAACATTGGTGGCATT----T-GTATTGCACCAATTCAGTCCCTGGAGTTGTTTTAACTAAAGTGTG-CCACTAAT-GTTT-AA-A--------GGGGCCAATAATGCAATGCCACATTCTAGATCGAACACTGGTAGAAAATTATTACAATATTTT---------TTTTCTTCATTTTTTTTCATTTTATAGACCAAAACAAAATTATATGTGTGGTTACCGTTTCCTGACCGACCCTATTTGTTCCAAGC-ACCCCAAGCATTTTATTGCATGATTTTCGTTATCTTCTATGGGAACTCA-TTTTATGTTATGCGATCAACCTGAATAGAGAG
gi|10 : TGTTTACACTCAATGTAACTGGTT---TTATTTTAGT--T---CTAGTTAA--GGCCTT-GAAACTGAACATCCTTGAATGTCTAACCAATTTGATTGCAA----------TTCTTGTTTTGC---CAATATTTT---TA-------CAAACCTAGCTTATCACCCTGAGGAA
gi|11 : atgtaataataatgagatgtttgatctcttaaatgcagatgttctataataagtactaacatgggtaatggggtttaatttgctTGTTTACACTCCATGTGACTGATT---
gi|12 : agtgttcagtctagtttgcagtaaaaagaggagatcacttcacaagaaaacttgggagtcattcagtaaaagggaccatcataaaaatcaatataaatggtgcgctgttcattgtctgattagcgtagacattctataattagtactggaagcggtaacgggaattgattggct-AA-TAAAAACTGGATTAATTTGATT--GATTGCA-A-AAAATATGAAACAACCCGAACATCGGCATCATT----T-GTATTGCGCCAATTTAGCCCCAGGAGTCAT-----CAAAAGCACA-TCATTTCT-GTTT-AATAAGGACCTTGGGACCAATGGTGCAATAACATGATTTAGATTG
gi|13 : ttgctctattcttaggttgctaag---TATAAGTTACAGCAACACTTGCATACAGAT-ATAGACT------GGTGCACATGTATATGTTTACATCAGTA----T-GCACTATTTCATC-G-----A---TTAT-----AAGACAATGGTAACCAGTCTCT--GAC-------ATTA----ATTTA-TTTCCA-T-----tt
gi|16 : atagaagaaaaatgtcctccaatgtaatgctgaaaccaattAAAGAACCTTAACATCAGTAG-A----------ATTGTGCCAATTCAGCCCCAGAAGACAT-----CAAAAGTGCGACTTTTTGT-GCTTCAA-A--------AGGACCAATGGTGCAATGATGTGATCTAGATTGAAtttatt
gi|17 : aTGCATATGGAA-ATAGACT------GGTGTATGTGTACA----TATATCAGCG----T-GTGCTGTTTTCTTAA-GAGTAATTTT-C-----ATATCATAAGTAACCAGTCTCCA-GAT---T----CT-----GTTTC-CTTCCATT-----ATACttgc
gi|19 : TCCTTTTCATTTCTCTCCAATAAAATGTGC-CTAAGAACATAGCAG----AAGCA------------------------TTTAAAAA----------ATCATTGGCACAAATGCTTGCATAAGAAT-ATAGACT------GGTATACATTTA
gi|2 : gAGA--AAAG--AAAGATTA---TGATATCCTTTTCATTTCTTCCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATATTTTTATATGCTGAC-AC-TTTTTTATAAATCACAA---TACCAGTTATACAAATGCTTGCATACGAAT-ATAATCT------TGTATACATGTATAATTTTACATCAGC-----TTGCGCTATTTTATC-T-GAATA---TT-TTTT--ATTTTACTGGCAACCAGTCTCC--AAC---AA--ATT-----ATTTA-CTTCCT-T-----ATACA-AATATTT-GCTTTGAG----AATATTT-ATTTACATT--CCAGTCA-AAATAGAAGCTGATTTAATGCGATT--GAATACTGACAAAATATGAAATAACTGGAACTTGGGTAGCATT----T-GTATTGCACCAAGTCAGTCCTTGGAGGTGTTTTAACTAAAGTGTG-CCACTTGT-GTTT-AA-A--------GGGGCCTATGACGAAATGACACAGTCTAGATCGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAAA---CATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAGaaa
gi|20 : -AA-TGAAGGTGGGATAAATTTTATTACGATTACGGA-AAAATATGAAACAACCAGAACATCAATAACATT----T-ATACGGCATCAAATTGGCCAAGGAAGTTGT-----CAAAAGg
gi|21 : gcgagTATCT-ATTTTTATT--T--GACAGAA-TAAAAGCTGTATCAATTTGATT--AATTACGGA-ATGATATGAAATAAATGGAACAT-----ACATT----T-G
gi|22 : attgcaaTACACAAATGCTTACATA-GTAC-ATAGTCT------GATGTACATGCCTTATTTTA-A--AG------------TATTTT-T------------TT-T-----ATTTTATCCCTAACCAATTGCC--AAC---TA--TTG-----ATTTaaatatcgtatca
gi|3 : GTTTATTTT--TATTCTTGCAACAGA--AAAA--AAAAAAT----TGAG---CTTTTAATTTTCCGCCAAT-----------TTA--ATGT-GCAA----A----TAGTTTTGTATTCCAAC-ACCTTTTT-ATAAATTACAAAATCATCAGTTACACAAATACTTGCATACAGAT-A------------------CATGTATATTTTT-----------------GCCGTTTTAAC-GAGAG-A---TG-C-----A-------GTTAAGCAGTCTCT--GGTGGTTA--ATT------TTTA-TTTCCA-TTTT--ATATG-ATTTTTT-GCCTCGGGGAGCATTCTAT-CTTTA-ATGA-CCTGTCAGAA-GACAAACTGGATTAGTTCAATT--GATTATGGG-AAAA-ATTAAATAACCCAAACATCGGTAA-ATT----TCATATTATGCCGATTCAGCCTCGGGAATTGG-----CAAAAATGTG-CCATTTGT-GTTT-AA-A--------ATGGCCAGTGTT-----------GTTTAGATTGAACAC
gi|4 : gATATTTACACTCCATGTGACAA------TTAA---AGTACTGAACTAGTAAACAGACCTT-AAA--TGATTGTTC------GT-TTAGCAATTTGTATGTAG----------C----GTCTAT------TT-TTTT---TG-------GAAACCTACCTCATC-CCCGTGAGAA--CACCGCAGTTGCCATTT-TATTGCCTAG-TTATTTT--CAT
gi|5 : agtgttcaatctaggattgcagtaaagggaggaggcatccagaccacttcacatgaaaacttaggagtcattcagaaaaaggggccatcataaaaaacaatataaatgatgagctgttcattgtctgattaccgtagacattctataattagtactggaaacggtaacaggatttgattggctgattactccTTGCATACAAATTATAGACTTTTGTAAGTGTGCTTGTATATTTTGAAATCAGT-----GAGCACTATTTTATC-G-AAGTAATTTT-T-----AATTAATTGGCAATCAGCTCCC--AAC---TATTATTTTTTAATTTAGTTTCCA-TCATATATACA-AATATT---------------------------CATT--TTGGGCA------------GGATTCATATGATT--GCCAAC--A-AAAACACGAAATAACATGAACATCAATAGCATTAATTT-ATATTGCACCAATTTGGCCCCAAGAATTGT-----CTAAAGTGAG-CCATTTACAATTT-AA-A---------TGGCCAAC----CAGTGATGTGGTCTAAATTGAACACTGTTTGAatt
gi|7 : TGTATGCTGAC-ACCTTTTT-ATAAATCACAG---TTTCAATTACACAGATGC---------------------------------ATGTATAGTTTTACATCAGCATAATT-ATGCTATTCTATC-A-AAGTA---TT-TTTTTCATTTTATCAATAACCAGTTTCTTGAAC---TA--TTA-----ATTTA-ATTCAA-TTTA--ATGCATAATTTTTTGCTTT-----------TTT-TTTTA-ATTGACCAGCCA-AA--AAAATCCGGATTAATGTGACC--GCTTATGGA-AAAATATCAAATAACCCAAACATCG
gi|8 : TTTGATTGTAAAGACAAAGTTT----GTTTTTCAGATGTT-TTGT---TA-------CAAACCTGACTCGTCCCCCTG-AGGAATC-CC----------TTTACAAAGTTTAGTTTGCCTT--TTTTATAACAACAGATGACAT--ATAAAATAAGCTGATATTCTTTTTATTTTCCACCAATATAATG-TAACATAAAAAATGGCTGTTCTAAGCATAATATTGTATGTCGAC-ACC-TTTTTATAAATCAAAA---C-TCAGTTACACAAATACTTG
gi|9 : tgTGTTTACACTCCATGTGACTGGTTTTGTTAA---AGAACTGTACT-------GGACTTTGAAA--GGAGCGTTC------AT-TAGCCACTTTGACTGTAA----------T----GTTT-------GTT-TTTCAGATGGAATTAACAAACCTGGATCAACACCCTAAAGAATTC-CTTCAGTTGTGG--T-CATTGTTTAGTTTGTTTT----TT-TAGCAATAGA--GAGGACAAGGAAGC---TAATATTCTTTTCAATTCCC
blockSeqs : GTTTTG TTT A GA A T CA G AC A TTGAAT C C A AGACAAAGTTTGTTTTTCAGAT A AGATGGAATTAA A TGA ATC G CCAT A T TA C TG AC AAGC T AA TGC G A TTCT T T T . CT T AATCA C T A TTTGTAA T C CATAATT AAAGTATTTTTTTC AG C T TG TATTATTTTTTA G T CATAT T A TT GGGGAGCATTCTATC C GACCA T AAAT T AC A C C C AATT C A A C TTTAA A C A A C T AGGACCTTG GG G AT G A C TCTTTTTTT A . . A A C G TA T T G T
blockSeqs : GTT . A GT A A G . . T . . G T TTCTTGTTTTGCC . TA C GTG TTC T TGG . T CA A . . A C AA GCA G A . G T C . CT T TA T . A G A T TAT AAGAGTAATTTTC TA C A A GGTTAATT . . TTT . T T GAGAATATTTA T ACCT A GAAT G . T . T C . . A A C . A C . . . . A GG G GT
blockSeqs : ATT . . . . . . . . G . . C A CGTCTAT . TG A TAA CA . T . T TT . . . C G AT TAA A G . A A T . T T TA A . A G A C CGT TGAATATTTTTT TT T T . AAATT . . TTA . A T TTTT C CCA T GAAG T . G . G C . . A T T . T T . . . . G GA G AC
blockSeqs : . A TGTTT . TA . TG . . . . A . . . . . . . C . C . TT C . T G T A CTT GAAGTAATTTTT TT T C . TATTG . . . . T . . . TTG G AAT T . G . A C . . G G T . A T . . . . A GT . GT
blockSeqs : . . . . A C . T T T C TGA GAGAGATGC AT A T . TATTA . . . . T C AAT T . G . G C . . A G T . A A . . . . . . . .
blockSeqs : C C . A G G . . GATTAT TT T C . ATTA . . . AA A . G . C . . . G A T . T
blockSeqs : . . . . . . . TTT . . . . TCT . G . . . T . . .
blockSeqs : . . . . C
blockSeqCons : GTT*** CGTTTT******************** TNA TA** CT GAAGTATTTTT********* TTT************* AAT** *****
originalCons : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTTTTC---CGTT-TTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATC-G-GAGTA---TT-T-----ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTGAG----ATTATTT-ATTTACATT--CCGGNCA-AA-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
finalCons : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAACGTTTT--------------------GTT-TTTT---TG-------CAAACCTAGCTCATCACCCTNAAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTTTA--TT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-GCGCTATTTTATCGAAGTATTTTT---------ATTTTATCGGTAACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTTTTTT-------------TTTACATT--CCGGNCAAAT--AAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CTGGAAGTGAATCCTAGTGTACAATCTAGGATTGCAGTTAAGAGGGCCATTAGTGTGCCAAAGAAAAAAGGGGGCCATCATAAAAAACATTACTTATAAATGATGATGAGATGTTTGGTGTCTGAAAAGCATCTATATACATTCTATAATTGGTACGACCAGGGGTAATGGGGTGTGTATGCTTGTTAACACTCAAAGTGACTAGTTTTGTCAATGTACTGCACTGTTAAGCATTTCTTGAGAAATTC
Unaligned ( gi|14 ): TGTTCAATTTGGGATTTATTCATCTGGCCCCTTCAGAGGAAAACAGGGACAATTCCTTGAAAAATGAACTCATCATAATGATCATTATTTTAAATGATGATGTCATTCAGATGTTCAATGATTAAAAACAGTAGAAATTTTATAATTA
Unaligned ( gi|15 ): GTCATATTAAAAACTTGCATAGATGCAGTGTTCACTCTAGGATTTCAGCAAAGGGGTCAACTGGACACAGGGGGGTCACTTAGAAGAAAAGGGGTCATCATAATAAAGCATTATTAATT
Unaligned ( gi|18 ): CATCCTGTATATTGACTGGTCTACAGGTTTATTTATAAATAAATGAGCACGATTATATCGATAAACAGGTGGTAACTAGTCCCTTGCATGTAATTTATTTCCGTTATATATG
Unaligned ( gi|23 ): TCCATGTGACTGATTATAACAGACATAATATAATTAGTACTAGAAGTAGATACGGGATTTGATTGGCTTGTTTACTCCATGTTTATGTGA
Unaligned ( gi|24 ): CTGGCCACATACGAGAAGTCTATAGAACGTAAAGACCAGGTAATCATTCATAAAGATGAAT
Unaligned ( gi|25 ): CTTGCATATTGACTGGTGTATATTTTATTTACAAATTAGCGAACGCGATTTCATCGATAA
Alignments
lowQualScore : 222222 111 11 1 11 222222 1 7777777777777777777777777777777777 222222222222 111 1111 1 1111 1 1111 2 11 11 1111 1111 1111 11111 1111111 4444444444 1111111 22222 11 222222222222222 33333 888888888888888888888888888888888888 1111111 1 1111 22222 222222222 333333333 11 222 1 1
lowQualScore : 888888 777 3 66 3 3 77 0 33 1 888888 0 1 0 1 2222222222222222222222222222222222 777777777777 5 666 6666 2 0000 0 3 0 5555 0 11 11 9999 0 1 11 3333 6 3 7777 0 0 3 1 3 6 88 7 00000 2 0 4 3 3333333 0 6 2 1111111111 1 0000000 44444 00 1 555 5 11 777777777777777 5 5 44444 6 55 000000000000000000000000000000000000 3 3333333 0 0 1 66 1 0 0 4 0 2 0000 5 1 4 1 88888 1 2 6 6 6 6 777777777 44 2 44 0 1 1 1 999999999 1 88 111 1 5 1 1 22 5 1 1 1
lowQualScore : ...... ... . .. . . .. . .. . ...... . . . . .................................. ............ . ... .... . .... . . . .... . .. .. .... . . .. .... . . .... . . . . . . .. . ..... . . . . ....... . . . .......... . ....... ..... .. . ... . .. ............... . . ..... . .. .................................... . ....... . . . .. . . . . . . .... . . . . ..... . . . . . . ......... .. . .. . . . . ......... . .. ... . . . . .. . . . .
lowQualScore : 444444 555 2 00 2 5 00 0 88 0 888888 0 0 8 4 6666666666666666666666666666666666 444444444444 6 222 8888 8 2222 0 2 8 8888 0 00 00 6666 8 0 88 6666 4 8 0000 8 8 2 0 7 7 33 3 44444 9 9 0 8 1111111 8 9 9 3333333333 9 3333333 88888 88 0 222 0 99 555555555555555 7 7 33333 7 99 333333333333333333333333333333333333 0 0000000 8 2 0 99 4 0 9 7 1 5 6666 0 4 0 4 66666 0 2 7 7 7 7 888888888 77 5 33 7 0 0 0 000000000 0 00 555 0 5 0 0 00 5 0 0 0
consensus : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTT------T---G----TTTTTT---TG-------CAAACCTAGCTCATCACCCTGGAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGACT------GGTGTACATGTATATTTTTACATCAGC-----T-G--CGCTATTTTATCGA-AGT-A-TTTTTT--ATTTTAT-CGGT-AACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTT---------T-------TTT---TTTACATT--CCGGTCA-A--A-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
Reference ( family-1721 ) : ATGTTTACACTCCATGTGACTGGTT---TTAA---AGTACTGAACTAGTAAACGGACCTT-AAA--TGANCGTTC------GT-TAANCAATTTGATTGTAA----------C----GTTT------T---G----TTTTTT---TG-------CAAACCTAGCTCATCACCCTNAAGAAATC-CCGCAGTTGCCGTTT-CATTGCCTAGTTTATTTT--TATT-TAGCAACAGA--AAAG--AAAGAATA---TGATATCCTTTTCATTTCCCNCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATAGTTTTGTATGCCGAC-ACCTTTTTTATAAATCACAA---TATCAGTTACACAAATGCTTGCATACGGAT-ATAGNCT------GGTGTACATGTATANTTTTACATCAGC-----T-G--CGCTATTTTATCGA-AGT-A-TTTTT---ATTTTAT-CGGT-AACCAGTCTCC--GAC---TA--ATT-----ATTTA-TTTCCA-T-----ATACA-AATATTT-GCTT---------T-------TTT---TTTACATT--CCGGNCA-A--A-TAAAAGCTGGATTAATNCGATT--GATTACGGA-AAAATATGAAATAACCCGAACATCGGTAGCATT----T-GTATTGCGCCAATTCGGCCCCGGGAGTCGT-----CNAAAGTGCG-CCATTTGT-GTTT-AA-A--------GGGGCCAATGGTGCAATGACGCGGTCTAGATCGAACACTGGTTGAAAATTATNANAATNTTTTTCTTTTTTTTTTTCTTCANTTTTTTTCATTTTATAGACCAAAACGAAATTACATGTGTGGTTACNGTTTCCTGACCGACCCTATTTGTTCCAAGCAACCCCAAGCATTTTATTGCNTGATTNTCNNTATCTTCTATGGGAACTCATTTTTATNTNATGCGATCAACCTGAATNGAGAG
gi|1 : ATGTTTACACTCCATGTGACTG------TTAA---AGTACTGAACTAGTAAATAGACCTT-AAA--TGATCATTC------GT-TAAGCAGTTTGTTTGTAA----------C----GTTT------TTTTG----TTTTTT---TG-------CCAACCTAGCTGATCACCC--GGGAAACA-CCACAGTTGCCATTT-CATTGCC-AATTTATTTTAATATT-TAACAATAGA--AAAG--AAAGAATA---TGATATCATTTTCATTTCTTCCCAATAAAATG-GCACTTAAAATATAGCAG----AAGCATAGTTTTGTATGCGGACCATTTTTTTTATAAATCACAA---TACTAGTTATACAAATGCTTGCATACGGAT-ATAATCT------TGTATACATGTATAATTTTACATCAGC-----TTG--CGCTATTTTATCTG-AAT-A-TCT-----ATTTTAT-CAGC-AACCAGTCTCC--AAC---AA--ATT-----ATTTT-TTTCCG-T-----ACACA-AATATTC-GCTT---------TGAGATTATTTCA-TTTACATT--CCAGTCA-A--G-TAGAGGCTGATTTAATGCGATT--GATTACGGACAAAACATGAAATACCTGGAACATTGGTGGCATT----T-GTATTGCACCAATTCAGTCCCTGGAGTTGTTTTAACTAAAGTGTG-CCACTAAT-GTTT-AA-A--------GGGGCCAATAATGCAATGCCACATTCTAGATCGAACACTGGTAGAAAATTATTACAATATTTT---------TTTTCTTCATTTTTTTTCATTTTATAGACCAAAACAAAATTATATGTGTGGTTACCGTTTCCTGACCGACCCTATTTGTTCCAAGC-ACCCCAAGCATTTTATTGCATGATTTTCGTTATCTTCTATGGGAACTCA-TTTTATGTTATGCGATCAACCTGAATAGAGAG
gi|10 : TGTTTACACTCAATGTAACTGGTT---TTATTTTAGT--T---CTAGTTAA--GGCCTT-GAAACTGAACATCCTTGAATGTCTAACCAATTTGATTGCAA----------TTCTTGTTT------T---GCCAATATTTT---TA-------CAAACCTAGCTTATCACCCTGAGGAA
gi|11 : atgtaataataatgagatgtttgatctcttaaatgcagatgttctataataagtactaacatgggtaatggggtttaatttgctTGTTTACACTCCATGTGACTGATT---
gi|12 : agtgttcagtctagtttgcagtaaaaagaggagatcacttcacaagaaaacttgggagtcattcagtaaaagggaccatcataaaaatcaatataaatggtgcgctgttcattgtctgattagcgtagacattctataattagtactggaagcggtaacgggaattgattggctTT-GCTC---------T-------ATT---CTTAGGTT-----GCTA-AGAA-TAAAAACTGGATTAATTTGATT--GATTGCA-A-AAAATATGAAACAACCCGAACATCGGCATCATT----T-GTATTGCGCCAATTTAGCCCCAGGAGTCAT-----CAAAAGCACA-TCATTTCT-GTTT-AATAAGGACCTTGGGACCAATGGTGCAATAACATGATTTAGATTG
gi|13 : ---TATAAGTTACAGCAACACTTGCATACAGAT-ATAGACT------GGTGCACATGTATATGTTTACATCAGTA----T-G--CACTATTTCATCGA--------TTAT---AAGACAA-TGGT-AACCAGTCTCT--GAC-------ATTA----ATTTA-TTTCCA-T-----tt
gi|16 : atagaagaaaaatgtcctccaatgtaatgctgaaaccaattAAAGAACCTTAACATCAGTAG-A----------ATTGTGCCAATTCAGCCCCAGAAGACAT-----CAAAAGTGCGACTTTTTGT-GCTTCAA-A--------AGGACCAATGGTGCAATGATGTGATCTAGATTGAAtttatt
gi|17 : aTGCATATGGAA-ATAGACT------GGTGTATGTGTACA----TATATCAGCG----T-G--TGCTGTTTTCTTAAGAGTAA-TTTTC---ATATCAT-AAGT-AACCAGTCTCCA-GAT---T----CT-----GTTTC-CTTCCATT-----ATACttgc
gi|19 : TCCTTTTCATTTCTCTCCAATAAAATGTGC-CTAAGAACATAGCAG----AAGCA------------------------TTTAAAAA----------ATCATTGGCACAAATGCTTGCATAAGAAT-ATAGACT------GGTATACATTTA
gi|2 : gAGA--AAAG--AAAGATTA---TGATATCCTTTTCATTTCTTCCCAATAAAATG-GCACTTAGAATATAGCAG----AAGCATATTTTTATATGCTGAC-AC-TTTTTTATAAATCACAA---TACCAGTTATACAAATGCTTGCATACGAAT-ATAATCT------TGTATACATGTATAATTTTACATCAGC-----TTG--CGCTATTTTATCTG-AAT-A-TTTTTT--ATTTTAC-TGGC-AACCAGTCTCC--AAC---AA--ATT-----ATTTA-CTTCCT-T-----ATACA-AATATTT-GCTT---------TGAGAATATTTA--TTTACATT--CCAGTCA-A--AATAGAAGCTGATTTAATGCGATT--GAATACTGACAAAATATGAAATAACTGGAACTTGGGTAGCATT----T-GTATTGCACCAAGTCAGTCCTTGGAGGTGTTTTAACTAAAGTGTG-CCACTTGT-GTTT-AA-A--------GGGGCCTATGACGAAATGACACAGTCTAGATCGAACACTGGTTAAAAATTATGAAAATCTTTTTCTTTTTTTTTTTCTTCAATTTTTT--ATTTTATAGACCAAAACGAAA---CATGTGTGGTTACAGTTTCCTGACCGACCCTATTTATTCCAAGCAACCCCAAGCATTTTATTGCCTGATTGTCTATATCTTCTATGGAAACTCATTTTTATTTGATGTGATCAACCTGAATTGAGAGaaa
gi|20 : -A--A-TGAAGGTGGGATAAATTTTATTACGATTACGGA-AAAATATGAAACAACCAGAACATCAATAACATT----T-ATACGGCATCAAATTGGCCAAGGAAGTTGT-----CAAAAGg
gi|21 : gcgag-AATATCT-ATTT---------T-------TAT---TTGACA----------G-A--A-TAAAAGCTGTATCAATTTGATT--AATTACGGA-ATGATATGAAATAAATGGAACAT-----ACATT----T-G
gi|22 : attgcTACACAAATGCTTACATA-GTAC-ATAGTCT------GATGTACATGC---------------C-----T-------TATTTTA---A-AGT-A-TTTTTTTTATTTTAT-CCCT-AACCAATTGCC--AAC---TA--TTG-----ATTTaaatatcgtatca
gi|25 : AT-ATTGACT------GGTGTATATTT-TATTTACAAATTAGC-------GAACGCGATTTCATCGA-
gi|3 : cttgcGTTTATTTT--TATTCTTGCAACAGA--AAAA--AAAAAAT----TGAG---CTTTTAATTTTCCGCCAAT-----------TTA--ATGT-GCAA----A----TAGTTTTGTATTCCAAC-ACCTTTTT-ATAAATTACAAAATCATCAGTTACACAAATACTTGCATACAGAT-A------------------CATGTATATTTTT-------------------GCCGTTTTAACGAGAG-----------------ATGCAGTTAAGCAGTCTCT--GGTGGTTA--ATT------TTTA-TTTCCA-TTTT--ATATG-ATTTTTT-GCCTCGGGGAGCAT-------TCTATCTTTA-ATGA-CCTGTCAGA--A-GACAAACTGGATTAGTTCAATT--GATTATGGG-AAAA-ATTAAATAACCCAAACATCGGTAA-ATT----TCATATTATGCCGATTCAGCCTCGGGAATTGG-----CAAAAATGTG-CCATTTGT-GTTT-AA-A--------ATGGCCAGTGTT-----------GTTTAGATTGAACACtaa
gi|4 : gATATTTACACTCCATGTGACAA------TTAA---AGTACTGAACTAGTAAACAGACCTT-AAA--TGATTGTTC------GT-TTAGCAATTTGTATGTAG----------C----GTCT------A---T----TTTTTT---TG-------GAAACCTACCTCATC-CCCGTGAGAA--CACCGCAGTTGCCATTT-TATTGCCTAG-TTATTTT--CAT
gi|5 : agtgttcaatctaggattgcagtaaagggaggaggcatccagaccacttcacatgaaaacttaggagtcattcagaaaaaggggccatcataaaaaacaatataaatgatgagctgttcattgtctgattaccgtagacattctataattagtactggaaacggtaacaggatttgattggctgattactccTTGCATACAAATTATAGACTTTTGTAAGTGTGCTTGTATATTTTGAAATCAGT-----GAG--CACTATTTTATCGA-AGT-AATTTTT---AATTAAT-TGGC-AATCAGCTCCC--AAC---TATTATTTTTTAATTTAGTTTCCA-TCATATATACA-AATATT---------------------------------CATT--TTGGGCA--------------GGATTCATATGATT--GCCAAC--A-AAAACACGAAATAACATGAACATCAATAGCATTAATTT-ATATTGCACCAATTTGGCCCCAAGAATTGT-----CTAAAGTGAG-CCATTTACAATTT-AA-A---------TGGCCAAC----CAGTGATGTGGTCTAAATTGAACACTGTTTGAatt
gi|7 : TGTATGCTGAC-ACCTTTTT-ATAAATCACAG---TTTCAATTACACAGATGC---------------------------------ATGTATAGTTTTACATCAGCATAATT-A--TGCTATTCTATCAA-AGT-A-TTTTTTTCATTTTAT-CAAT-AACCAGTTTCTTGAAC---TA--TTA-----ATTTA-ATTCAA-TTTA--ATGCATAATTTTTTGCTT---------T-------TTTT--TTTA-ATTGACCAGCCA-A--A--AAAATCCGGATTAATGTGACC--GCTTATGGA-AAAATATCAAATAACCCAAACATCG
gi|8 : TTTGATTGTAAAGACAAAGTTT----GTTTTTCAGAT---G----TTTTGT---TA-------CAAACCTGACTCGTCCCCCTG-AGGAATC-CC----------TTTACAAAGTTTAGTTTGCCTT--TTTTATAACAACAGATGACAT--ATAAAATAAGCTGATATTCTTTTTATTTTCCACCAATATAATG-TAACATAAAAAATGGCTGTTCTAAGCATAATATTGTATGTCGAC-ACC-TTTTTATAAATCAAAA---C-TCAGTTACACAAATACTTG
gi|9 : tgTGTTTACACTCCATGTGACTGGTTTTGTTAA---AGAACTGTACT-------GGACTTTGAAA--GGAGCGTTC------AT-TAGCCACTTTGACTGTAA----------T----G-TT------T---G----TTTTTCAGATGGAATTAACAAACCTGGATCAACACCCTAAAGAATTC-CTTCAGTTGTGG--T-CATTGTTTAGTTTGTTTT----TT-TAGCAATAGA--GAGGACAAGGAAGC---TAATATTCTTTTCAATTCCC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CTGGAAGTGAATCCTAGTGTACAATCTAGGATTGCAGTTAAGAGGGCCATTAGTGTGCCAAAGAAAAAAGGGGGCCATCATAAAAAACATTACTTATAAATGATGATGAGATGTTTGGTGTCTGAAAAGCATCTATATACATTCTATAATTGGTACGACCAGGGGTAATGGGGTGTGTATGCTTGTTAACACTCAAAGTGACTAGTTTTGTCAATGTACTGCACTGTTAAGCATTTCTTGAGAAATTC
Unaligned ( gi|14 ): TGTTCAATTTGGGATTTATTCATCTGGCCCCTTCAGAGGAAAACAGGGACAATTCCTTGAAAAATGAACTCATCATAATGATCATTATTTTAAATGATGATGTCATTCAGATGTTCAATGATTAAAAACAGTAGAAATTTTATAATTA
Unaligned ( gi|15 ): GTCATATTAAAAACTTGCATAGATGCAGTGTTCACTCTAGGATTTCAGCAAAGGGGTCAACTGGACACAGGGGGGTCACTTAGAAGAAAAGGGGTCATCATAATAAAGCATTATTAATT
Unaligned ( gi|18 ): CATCCTGTATATTGACTGGTCTACAGGTTTATTTATAAATAAATGAGCACGATTATATCGATAAACAGGTGGTAACTAGTCCCTTGCATGTAATTTATTTCCGTTATATATG
Unaligned ( gi|23 ): TCCATGTGACTGATTATAACAGACATAATATAATTAGTACTAGAAGTAGATACGGGATTTGATTGGCTTGTTTACTCCATGTTTATGTGA
Unaligned ( gi|24 ): CTGGCCACATACGAGAAGTCTATAGAACGTAAAGACCAGGTAATCATTCATAAAGATGAAT