lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 33333333333 1 111111111 1 111111 111111 1 1111111111 1111111111 2222222 1 1111111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 333333333333333333333 11 111 11111111111 0000000000000000000000 11 1 222 111 111111 111 2222222222222222 1 333333333333 11111 11111111 11 111 1 1 1 1111111 222222222 2222222222222 1 1 4444444444 1 111 2222222222222222 333333333 777777 111 1111 1 1 1 11 1 11 11111 666666666666 1
lowQualScore : 1 1 0 33333333333 7 4 777 777777777 4 2 2 666666 66 222222 4 55 5 8 4 7777777777 0 6 3 7 6 1 9 0 0000000000 777 2 55 44 1 0000000 3 4 4 1111111 3 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 3 1 6 3 555555555555555555555 0 11 111 4 99999999999 7777777777777777777777 6 8 11 6 222 4 111 4 4 111111 111 55 8 777 8888888888888888 3 3 0 1 888888888888 11111 2 66666666 4 11 222 5 1 1 4444444 4 444444444 777 4 2 1 5555555555555 5 5 7 9999999999 5 77 1 000 8888888888888888 77 000000000 6 1 0 5 333333 888 000 77 5 6 8888 5 3 0 3 1 88 2 6 9 3 6 6 55 4 2 66666 1 5 55 5 777777777777 0 8 0 1
lowQualScore : . . . ........... . . ... ......... . . . ...... .. ...... . .. . . . .......... . . . . . . . . .......... ... . .. .. . ....... . . . ....... . ................................................................................................................................... ........ . . . . ..................... . .. ... . ........... ...................... . . .. . ... . ... . . ...... ... .. . ... ................ . . . . ............ ..... . ........ . .. ... . . . ....... . ......... ... . . . ............. . . . .......... . .. . ... ................ .. ......... . . . . ...... ... ... .. . . .... . . . . . .. . . . . . . .. . . ..... . . .. . ............ . . . .
lowQualScore : 8 2 8 44444444444 0 4 888 888888888 4 2 9 444444 11 888888 4 77 2 0 0 5555555555 8 0 6 4 9 4 9 5 9999999999 555 1 55 77 6 7777777 6 6 3 8888888 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11111111 3 0 2 3 000000000000000000000 5 99 000 0 00000000000 4444444444444444444444 0 0 99 0 555 0 000 0 0 555555 000 55 0 000 0000000000000000 0 3 8 6 222222222222 11111 7 11111111 4 77 222 0 2 2 1111111 1 999999999 888 4 3 0 9999999999999 0 7 0 1111111111 7 99 4 000 9999999999999999 99 666666666 0 4 7 7 999999 666 000 99 7 0 0000 0 0 0 2 2 88 8 0 6 0 7 7 88 3 5 77777 4 1 44 7 000000000000 6 7 1 9
consensus : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGT----------CAGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAG-AGACTTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-CATTATTAGTACATAATTAAGAACGGGT-TTTGTTTA-CAAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAGCTTGTTCGGAANCGCG--TCGGTCGGTAA-TNTATGATC--AATTCACTTCAG-AGAG---A--AACATAGTATGGG-GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------A--------------TA------------------G--------TTTT--------TA-AGAACATCCCCTTTA-TTCCCCTC------------------AGTGTATTAATGAACTGGAACC---CAC-GA-----------GCTAATTTATTGCACGT--A----AGCGACGAATCGTTCATAT-AAAATN-AAAAATAAAATTACTTTTT-T---AAT-AACTGTACTAAAC-A------AA---CCA--CCCTTG---GTAG---------------CCTCTCAATATTGACTGCGATAAAGTGATTTGTGACGTAATAGCGC--GTG-CGATAGTAT-----CACGCGTA--------TA-TG-CAA---GGGAGGATCCTGAGCAAGAGTTACTAGACCAAACT-----AGTATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATATAATGCGTACTACGTTCG--------ATACAGTTTT-ATTGCAGACATCAATATT-AT-ATA-AT-TTAA--AAAAA---GAAAA-----------CC---CAATAACGATA--CATAATATT------AGTGAAGCCATAACTTTTCTAATCTTGT-TAATGAACCCCTTA------TCTAACG--GTC---TTAA--TC-CGCACACTACCACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGCTCGGTCCGCTCGTCTAAGAAATACACATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACANGA-----ATGGTTTTAGCAATACTATAAACACATTTAATTNCAA-TCATTTTTGTT----ATTATCAAAAAGTGTGCGTTTCGGAAGTTTAATGAGGCTTT
Reference ( gi|3 ) : AAGGCTCATTAAACTTCCGAAACGGTCATTTTTAGTTTTAATTTAAGT----------GAGTTTAACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAG-ACACTTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-CATTATTAGTACATAATTAAGAACTGGT-TTTGTTTA-CAAAT----------TAATGTTCGTCTCTTTCCGACAAACACCTTC-GGCAGAAAATGGGGAATTACGAAGCTTATTTGGAAACGCA--TTGGTCGGTAA-TATATGATC--AATTCACTTCAG-AGAA---A--AACATAGTATGGG-GAACTGAAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------A--------------TA------------------G--------TTTT--------TA-AGAACGTCCCCTTTA-TTCCCTGC------------------AGTGTATTAATGAACCGGAACC---CAC-GA-----------GC-----------ACCT--A----AGCGACGAATTGTTCATAT-AAAATC-AAAA-TAAAATTACTATTT-T---AAT-AACTGTACTAAAC-A------AA---CCA--CCATTG---GTAA---------------CCTCTCAATATTGACTTCAATAAAGTGATTTGTGACGTAATAGCGA--GTG-AAA-AGTAT-----CACGTGTA--------TA-TG-AAA---GGCAGGTTCCTGAGCAAGAGTTACTTGACCAAACT-----AATATTCCATACTCATTG--T-T-TC-CAG---TGCGTA-TAAATAATATAATACGTACTACCTTAG--------ATACAGTGTT-ATTGCTGACATCAATATT-AT-ATA-AT-TTAA--ACAAA---GAAAA-----------TC---CAATAACGATA--CATAATATT------AAAGAAGCTATAACTTTTCTAATCTTGT-TAATGAACCCCTTAAAGG--TCTAACG--GTC---TTAA--TC-CGCACACTACCACTGCAATATTTGTGTGTGTACTTCCGAAGACTGGCAGAGGGACAGTCGGAAAGCAACGGAGTCATTACCAAATTACAAAAATGTAAACAAAAGTTAAAAGTGCGGTCCGCTCGTCCAAGAAACACACATTTTGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTTAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACATTTAATTATAA-TCA----TAAT----ATTATCAAAAAGTGTGCATTTCTGAAGTTTAATGAGGCTTT
gi|5 : AAGGCTCATTAAACTTCCGAAACGATCGTGTTTAGTTTTAATTTAAGT----------CAGTTTTGCTC-TTCC---AGATGATAGAATACATGTTTATTTAAT---------CACTGAC-AGACTTCGCAAACGAAAA-------TAAAAATA--A------AGCA-CATTATTAGTACATAATTAAGAACGAGT-TTTGTTTA-CAAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGCTTCGAAGCCTGTTTGGAAACACG--TTGGTCGGTAA-TTTATGATC--AATTCACTTCAG-AAAG---A--AAAATAGTATGGG-GAACTGTAGGGGATGCGGTT-------AA-A-----------------------------T------------------T----------------------------------------------------------------------------------TTTT--------T-------------TTTA-TTCCCCTC------------------GGTGTATTCATGAACTGGAACC---CAC-GA-----------GC-----------ACGT--A----AGCGACGAATCGTTCATAT-AACATC-AAAAATGAAATTA--ATTTGT---GATTAACTGTACTTAAC-A------AG---CTA--CCCTTG---ATAG---------------CCTCTCAATACTGACTGCGATAAAGTGATCTGTGACGTAATAGCGC--GTG-CGATAGTAT-----CACGCGTA--------TA-TG-CAA---AGAAGGACCCTGAGCAAGAGTTGCTAGACAAAACT-----AGTATTCCGTATTCATGG--TAT-TT-CAG---TGCGTA-TATATAATAAAATGCGTTCTACATTCG--------ATACAGTTTT-ATTGCAGTCATCAATAT--AT-ATATAT-TTAA--AAAAAAAAGAAAA-----------CC---CAAGAATAATA--CATAATATT------AATGAAGCCATAACTTTTCTAATCTTTTCTAATGGACCCCTTA------TCTAACG--GTC---TTAA--TC-CACACACTACCACTGCAGTATTCATTTGTGTACTTTCGAACACTGGTGGAGGTACAATCGGAAAGCAACTGAGTCACTATGGAATTACAAAAACGTAAACAAAAGTTAAGAGTTCGGTCCGCTCGTCTAAGAAAGACACATTTCGATCGAAATTATTAA-TTTTCA-CGC--TTTTTCAAAAACAGTCGCTAAGGTGTATACATGA-----ATGGTTTTAGCAATACTATAAACACATTCAATTGCAA-TCATTTTTGTT----ATTATC--AAAGTGTGCGTTTCGGAAGTTTTATGAGGCTTT
gi|5 : taAAGCCTCATAAAACTTCCGAAACGCACACTTTaac
gi|2 : taaaggctcattaaacttccgaaacgatcgtgtttagttttaatttaagtcagttttgctcttccagatgatagaatacatgtttatttaatcactgacagacttcgcaaacgaaaataaaaataaagcacattattagtacataattaagaacgagttttgtttacaaattaatgttcgtctctttccgataaacaccttcggcagaaaacggggagcttcgaagcctgtttggaaacacgttggtcggtaatttatgatcaattcacttcagaaagaaaaatagtatggggaactgtaggggatgcggttaaattttttttttattcccctcggtgtattcatgaactggaacccacgagcacgtaagcgacgaatcgttcatataacatcaaaaatgaaattaatttgtgattaactgtacttaacaagctacccttgatagcctctcaatactgactgcgataaagtgatctgtgacgtaatagcgcgtgcgatagtatcacgcgtatatgcaaagaaggaccctgagcaagagttgctagacaaaactagtattccgtattcatggtatttcagtgcgtatatataataaaatgcgttctacattcgatacagttttattgcagtcatcaatatatatatatttaaaaaaaaaagaaaacccaagaataatacataatattaatgaagccataacttttctaatcttttctaatggaccccttatctaacggtcttaatccacacactaccactgcagtattcatttgtgtactttcgaacactggtggaggtacaatcggaaagcaactgagtcactatggaattacaaaaacgtaaacaaaagttaagagttcggtccgctcgtctaagaaagacacatttcgatcgaaattattaattttcacgctttttcaaaaacagtcgctaaggtgtatacatgaatggttttagcaatactataaacacattcaattgcaatcatttttgttattatcAAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGT----------CAGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGATGACAATGATCGCTGAG-AGACTTTGCAACCAAAAA-G----ATAAATATA--A------AGCA-CATTATAAGTACATAATTAAGAACGGGT-TTTGTTTA-CAAAT----------CAATGTTCGTCTCTTTCCAATAAACACCTTC-GGCAGAAAAGGGGGAGTTATAAAGCTTGTTTGGAAATGCA--TCGGTCGGTAA-TATATGATA--AATTTGCTTAAA-AGAA---A--AACATATTATGGG-GAACTGTAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AATTAACCGCTTGCATTTAAA--------------TA------------------G--------TTTT--------TA-AGAACGTCCCCTTTA-TTCCCCTC------------------AGTGTACTAATGAACTGGAACT---CAC-GA-----------GC-----------ACAT--A----AGTGACCAATCATTCATAT-AAAATC-AAAAATAAAATTTCTTTTT-TT--AAT-AACTGTACTAAAC-A------AA---CCA--CCCTTG---GTAA-----------------------TATTGACTGCGATAAAGTGATTTGTAACGTAATTGCGT--GTGCGAA-AGTAT-----CACACGTA--------TA-TG-CAA---GGGAGGATCCTGTGCAAGAGTTACTAGACGATACT-----TGTATTCTGTACTCATTG--T-T-TTTCAG---TGTGTA-TAAATGATGCAATACGTACTACGTTCG--------ATACAGTTTT-ATTGCAGACATCAATATT-AT-ATA-TT-TTAA--ACAAA---GAAAA-----------CC---CAATAACGAAA--CATAATATT------AGTGAAGCCATAACTTTTCTAATCTTGT-TAATGAACCCCTTA------TCTAACT--GTC---TTAA--TC-CGCACACTACCGCTGCAGTATTCATTTGTGTACTTCCGAACACTGGTGGAGGGACAGCCGGAAAGCAACCGAtaac
gi|4 : atttaaaattatgattggaaagagagagtgagatagagagacttagcttgttgactagtaaggtggaagttaacctttaacgtttatgaaactaagtgcagaatacacatttattccagtttatatagccaatatagacaaagaaagtatcaccaaaatccatgcaacaggaaattcacctgagaaagtatagttaAAAGCTCATTAAACTTCCAAAATGGTCATTTTTAGTTTTAATTAAAGT----------CAGCTTTACGC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAG-AAACTTTGCAAATGAAAA-A-----TAAATATA--A------AG------------TCCATAATTAAAAATGGAT-TTTGTCTA-CAAAT----------TAATGTTCGACTCTTTCCAATAAACACCTTTAGGCAGAAAAAGG-------CGAG------TTG----CGCG--TCAGTCAATTA-TATATGATC--AACTCACTTCAG-AGA-----------------GAG-GAACTGTAGGGGATGCAGTT-------AA-A---------AA------------------T------------------T------------------AA------------------A--------------TAACTGCTTGTGGTTAGATAG--------TTTT--------TA-AGAACTTCCACTTTA-TTCCCCTC------------------AGTTTATGAATGAACTGGAACTA--CAC-AA-----------GCTAATTTATTGCACGT--A----AGCAACGAATCATTTATAT-ATAATT-AAAA-ATGAATTACTTTTT-T---AAT-AATTGTACTAAAT-A------AA---CCA--CCCTTA---GTAG---------------CTTCTCCATACTGATTGTGATAAAGGGATTTGGTAC-TAATAGGGCTTGTG-ATA--GTAT-----CACGTGTG--------TA-TG-CAA---GGAAGGATCCTGAGCAAGAGTTACTAGACTAAACT-----AGTATTCCATACTCATTG--T-T-TTTCAG---TGCGTA-TAAATAATACATGA--TACTATGTTCA--------ATACAGTTTT-ATTGGAGACAGCAATAT--AT-TT---TCTTAA--AAAAA---GAAAA-----------CC---CAATAACAATA--CATAATATT------AGTGAAGCCATAACTTTTCTAACTGTGT-TTATGAACCCCTTA------TCTAATG--GTC---TTAA--TC-TGCCCACTGCCATTGCAGTATTCATTTGTGTACTTCCGAACATTGGCAGAGGTACAGTGGGAAAGCAACAGAATCAATACGGAATTACAAAAATGTAAGCAAAAGTTAAAAGCTTGGTCCGCTCATCTAAGAAATTCACATTTCAACAGAAGTTATTTATTTTTCT-TGCTTTTTTTTAAAAACAGTCACTAAGGGGTCTACAGAA-----ATGGTTTTGGCAA-ATTATAAATACATTTAATTACAA-TCATTTTTGTT----ATTATCAAAAAGTGTGCATTTCAGAAGTTTAATGAGGATTTa
gi|1 : taAAGGCTCATTAAACTTCCG---------TTTTTAGTTTTAATTTAAGT----------CAGATTTATTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------TACTGAG-AGATTGTGCAAACGAAAA-A----ATAAATATA--A------AGCA-AATTATTAGTACATAATTAAGAACAGGT-TTTGTTTA-CAAAT----------TAATGTTTGTCTCTTTCCGATAAACACTTTC-GGCAAAAAAGGGGGAGTTACTAAGCTTGTGAGGAAACGCG--TCGGTCGGTAA----------------CACTTCAG-ACAG---A--AACATAGTATGGG-GAACTGTAGGGGATGCGGTTTATATTGAA-T---------AACTGCTTGCTG--------T------------------T------------------CG------------------A--------------TA------------------G--------TTTT--------TA--GAACATCCCCTTTA-TTCCCTTC------------------AGT-----AATGAACTTGAGCC---CAC-AA-----------GCCAATTTATTGCACGT--A----AGAGACGAATCATTTATAT-AAGATT-AAAAATAAAATTACTTTTT-T---AAT-AACTGTACTAAAC-A------AC---CCA--CCCTTG---GTAG---------------CCTCTCAATATTGACTGCGATAAAGTGATTTGTGACGTAGTAGCGT--GTG-CGATAGTAT-----CACGCATA--------TA-TG-CAA---GGGAGGATCCTGAACAAGAGTAATTAGACCAAACT-----AGTATTCCGTACTCATTG--T-TGTT-CAG---TGCGTA-TAAATAATATAATGAGTACTATATCCG--------ATACAGTTTT-ATTGCAAACATCAGTTTA-ATAATA-AT-AAAA--AAAAA---GAAAA-----------CC---CAATAAAGATA--CATAATATT------AATGAAGCCATAACTTTTCTAATaa
gi|13 : ttttttgacaaaatcacacttacatggttgaatttttagaaacaaaataaattagaatgctactttcaccactttcatattcattcagaaaacttatttttggtataagagtagttgttgtggcgaataaaattaggattcagacttataaggaagttattaggaatgctaggttttaacactaacttttatatgctttaatgaagaatcgaaaatttttaataaaaaaaaatataatttctatttattgctcttgttattaattaatattcctatatattatgacaaacaccatattttttggtttaatatactttaattattaAAGCCTCATTAAACTTCCGAAATGCACACTTTT
gi|9 : aattttgttaatgaacgccttatctaacgatcttaatccgtacactaccactgcagtattcatttgtatgctatcgaacactggcggaggtacagtcggaaagcaaccgagtcattactgaataacataaatgtaaacaaaagttaaaagcacggtccgctcgtctaagaaatacacatttcgatcgaatttatttattttctcacatttttcaaaaacagtcacaaaggggtctacatgaatggttttagcaatactataaacacattttattccaatcatttttgtaattgtcaAAGGGACATTAAACATCCCAAACAGTCCCTTTT--TTATCATTTAAGT----------CAGTTTTACTCCTTCCTTCAGATGACAGATTACAT-TTTATTTGAC---------CACTGAG-AAAGTATGCAAAAGGAAA-A----ATAATTATA--A------CATA-CATTACT--TTTATAATTGTGAACGAGTGTTTGTTAA-AATAT----------TAATGGTCATCTCTTTCTGATA---------------AAAACGGGGAGTCACAAAGCATATTGGGAATCGCG--TC-ACCAGTAA-TTTAAGTTTTAAAGT-ATTT--G-TCAA---T--AACACAGTATGGGAGGAATGTAGGGGATGT-GTT-------AAGA---------GA------------------T------------------TATCAAGCCAGTTGTGGTGAA------------------G--------------CA------------------G--------TTTT--------TA-AACACATCCCCTACA-TTCTCCTC------------------AGTGTATTATTGAGCTTGAACC---CTC-AA-----------GCTGAATTATT--GCATGGA----AGCAATCAATCACTCATG--AATATA-AAAA-TAAAATAA--AATT-T---AAC-AGCTGCACTTAAC-A------AAAATCCC--CTA--G---GTAG---------------CCTCTCAATACTGACAGCGAGGACGTGATtaa
gi|16 : AAGCCTCATTAAACTTCCGAAATGcagagcatactaggtaacataataatgcatgcaacagaatcaatcaca
gi|14 : gtttggtctgctcgcctaagaaaaatatattttaatcgaagttatttattttctggcgttttaaaaaacagtcactaatgggtctacaggaatggttttagcaatactatcaacacatgtaattacaatcatttttgttattatcaatttgtgtgAAGGCTCATTCAACTTTTGAAACGTTCATTTTTTGTTACAGTCTACAT----------CCATTTTACTC-TTCA---AGTTCATAGATTCCATGTTTATTTGAT---------GAATGAGAACA-TATGCAAATGAAAATATACCATAAATATACCA------TGCATCAGTTTCAG----TAATTGTGAATGGGTATTTGTTTT-TGCAT----------CAATGGTCGCCTCTTTCCGATAACCACCTTC-AGAAGAAAAtaaga
gi|7 : tcctgaGGCTCATTAAACATCCGAACCAGTTGTTTTAAGTTATAATTTAAGTCTTTATTTTCAAGGTTTGTTC-TTCC---AGAGAATAGATTATATGTTTATTTGAT---------CACTGAG-AAAGTTTGCAAATGAAAATA----ATAAATATA--ATGTACCAGCA-CGTTATT-CTAAATAATTATGAACGGGT-TTGGTTTG-CAAGT----------TAATGGTCGTCTCTTTCCAATAAACGC------ACAGAAAATGGCGAGTCATGAAGCTTTTTCCGAATAGCG--CCGGTTGCTAA-TGTATACAC--AATTCATTACAATAG--------GGCACCGCATGGG-GGATTGTAGGGGATGTGTTT-------AG-A---------AA------------------TTATCAAGCTGCTAGTGGCT------------------AG------------------A--------------TA------------------G--------TAAT--------TA-AACACATCTCTTTTA-TTCTTAAC------------------AGTGTTTTAATAAACTTGTACT---CAC-AA-----------GCTA---------ATAT--ATTATAGTGACGAATCGTTCATATAAAAATA-AAAA-TAAAATTAT--TTT-T---AGT-AACTGTAGCAAGA-ACTTTCTAA---CTAACTCATTGACTGTAATAAGTAGCTTGATAGCGTCTCAATATTGACTGCAAGAAAGTGATTTGTTACATATTAGCAC--ATACAAG-ATTATAAATACATTTGTA--------TA-TA-TAAGATGGC-GGTTCCTGAGCAAATGTTACCTGATCAAACTAGCACAATATT-GGTACTCATTG--TAT-TT-CAGACTTG-GAA-TAAAAAATGT-ATGCCGCCTACGCTAGTGAAAACAATATATTTTT-AT--CAGATATCAATATTCAT-TT---T-TTCA--ACAAA---AAAAAAAATTATTTTTTCACTCACTAACGATAATTATAATTTTTTCTCC-----AGCCATAATTTTACTTCTCCATT-TAATGGACCCCT----GA--TCCAAC----TC---TCAA--TC-AGCACAATACcaagccttgctcagaatcacattattcctttattt
gi|4 : atCTCATTAAACTTCTGAAATGCACACTTTTatgcttttcactta
gi|6 : taaaagctcattaaacttccaaaatggtcatttttagttttaattaaagtcagctttacgcttccagatgatagaatacatgtttatttgatcactgagaaactttgcaaatgaaaaataaatataaagtccataattaaaaatggattttgtctacaaattaatgttcgactctttccaataaacacctttaggcagaaaaaggcgagttgcgcgtcagtcaattatatatgatcaactcacttcagagagaggaactgtaggggatgcagttaaaaattaaataactgcttgtggttagatagtttttaagaacttccactttattcccctcagtttatgaatgaactggaactacacaagctaatttattgcacgtaagcaacgaatcatttatatataattaaaaatgaattacttttttaataattgtactaaataaaccacccttagtagcttctccatactgattgtgataaagggatttggtactaatagggcttgtgatagtatcacgtgtgtatgcaaggaaggatcctgagcaagagttactagactaaactagtattccatactcattgtttttcagtgcgtataaataatacatgatactatgttcaatacagttttattggagacagcaatatattttcttaaaaaaagaaaacccaataacaatacataatattagtgaagccataacttttctaactgtgtttatgaaccccttatctaatggtcttaatctgcccactgccattgcagtattcatttgtgtacttccgaacattggcagaggtacagtgggaaagcaacagaatcaatacggaattacaaaaatgtaagcaaaagttaaaagcttggtccgctcatctaagaaattcacatttcaacagaagttatttatttttcttgcttttttttaaaaacagtcactaaggggtctacagaaatggttttggcaaattataaatacatttaattacaatcatttttgttattatcaCCCAGTAAACTTCCGAAACGGTCGTTTTTAGTTT--ATC----------------AGTTTTTCTC-TTCC---AGATGATAGAATACATGTTTGTTTGAT---------CACTGAG-AAACTTTGCAATCGAAAA-A----ATAAATATA--A------AGCA-CATTATAAGTACATAATTAAGAACGGGT-TTTGTTAA-CAAAT----------TAATGTTTTTCTTTTTCCGATAAACACCTTC-GGCATAAAACGGGAAGTTACGAAGCTTGTTCGGA----------------------TATGATT--AATTCGCTTCAG-AGAG---A--AACATAGTATGGG-GAACTGTAGGGGATGCAGTT-------GA-A---------AA------------------T------------------T------------------AA------------------A--------------TAACCGCTTGCGGTTAGATAG--------TTTT--------TA-AGAACATCCCCTTTA-TTCCCCTC------------------AGTGTATTAATGAACTGGGACC---CAC-GA-----------GCTAATTTGTTGCACAA--A----AGCGACGAATCGTTCATAT-AAAATT-AAAAATAAAATTACT-TTT-T---AAT-AACTGTACTAAAC-A------AA---CCA--CCATTG---GTAG---------------CCTCTCAATATTGACTAAGATAAAGTGATATGTGACGTAATAGCGC--GTA-TGATAGTAT-----CACGCGTA--------TA-TATAAA---GG-ATGATCCTGAGCAAGAGTTACTAGACCAAACT-----AGTACTCCGTACTCATT--------T-CAG---TGCTTA-TACATAATATAATGCGTACTTCGTTCG--------ATACATTTTTTATTGCAGACATCAATATT-TT--T---T-TTAAGAAGAAA---GAAAA-----------CC---CAAAAACGATA--CATAATATC------AGTGAAGCCATAACTTTTCGAATCTTGT-TAATGAACCCCTTA------TCTAACG--GTC---TTAA--TC-CGCACACTACCACTGCGGTATTCATTTGTGTACTTCCGAACACTAGCGGAGGTACATTCGGAAAGCAACCGGGTCATTATGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAATACACATTTgatttaa
gi|32 : CTCATTAAACTTCCGAAATGattg
gi|8 : aacagtgtgTCATTAAACTTCAAAAACGGTCGTTTTTAGTTTGAATTTGTTT----------CAGTTTTATTC-TTCC---AGATGATAGAATACATGTTTATT-GAT---------CACTGAG-AGACTTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-CATTATTAGTACAAATTTAAGAACGGGT-TTTGTTTA-CAAAT----------TAATGTTTGTTTCTTTCCGAT-AACACCTTC-GGGAGAAAACGAGGAGTTACGAAGCTT-TTCGGAAA-GCG--TCGGTCGGTAA-TATATGATC--AATTCACTTCAT-TCGG---A--AACATAGTATGGG-GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AAGTTACCGCTTGCGATGATA--------------TA------------------G--------TTTT--------TA-AGAACATCTCCTTTA-TTCTTCTC------------------AGTGAATTAAT------GAACC---CAC-GAGCTAATTTACTGC-----------ACGT--A----AGCGACGAATCGTTCATAT-TAGATTAAAAA-TAACATTATTTTCT-T---AAT-AACTGTTCCAAAT-A------AA---CCA--CCCTTG---GTAG---------------CCTGTCAGTATTGACTGTGATCAAGTTATTTTAGACGTAATAGTGC--GTG-CGATAGTAT-----CACGCGTA--------TA-AG-CAA---GGGAGGATCCTGAGTAAGTGTTACTAGACCAAACT-----AGTATTCCGTACTCATTGTTT-T-TT-CAG---TGCGTA-TATATAATATAATGCGTACTACGTTCG--------ATACAGTTTT-ATTGCAGACATCAATAC---------AT-TTAA--A--------AAAA-----------TC---CAATAACGATA--CATAATATC------AGTGAAGTCATAACTTTCC---------------AACCCCTTACATGTATCTAACGGTGTCACGTTAGATTCACGCGCACTACgtattaat
gi|20 : -TTTGTTTACCAAATGTGCACAGGCTAATTACCGTCACTTTCCGGTAAAGAACTTC-GACAGCATACGTGGAGCCACGAGGCGCGTTTAGAATCAGAACTT--TCGATAA-TTTATAATggaaagtccacgctatatg
gi|10 : aaataaaacacggactactttcaaaattaggttggaccacgtttgAACACCTTT-AGCATAAAACTGGGAGTCGCGAAACCTGATTGGAATCACG--TTGGTCGGTAATTTTATGCTC--ATTTAATTTCA--AGAATGTAGTAACACAGCATGGG-GGATTGTTGGTGATGTGTTT-------AG-A---------AATTGATAAGACATTCGTGGT------------------T------------------AA------------------A--------------TA------------------G--------TTTC--------------ACACCCCTTTTA-TTCTCCGC------------------AGTGTAT--ACAAGCT---ATTTTGCATAGA-----------GC----------------------GGTGATGAATCATTCATATGAAAATA-ATAA-TAAAA--------------AAA-AAATGTATTAAACAA------AA---AAA--ACTTTG---TTAG---------------CCTCTCAATATTGACTGTGAGAAAGTGATTTATT-CAT--TA-------TG-AAA---TAT-----CACACTTAATATCATCTA-TG-AGAT--GACAGATT-CTGAGCGAAA------TGACCA
gi|17 : tgattaaaatcataatttttagctcacctgTCGGCTA-TATATGCTC--AATTCATTTCAG-ATAGC--A--AACATAGCATGGG-G--CTGTATGGGATGT-GTT-------GA-ATATGGGATGAA------------------T------------------T------------------AA------------------A--------------TA------------------GCCGCTTGCTTTTGTCGCATGCA-AGAGCATCACTTTTA-TTcatgttatgaaaagataaaactttttttcattcaaacatgtttttaaatgcgccaaatatcac
gi|2 : cgcaaatagtctaGGG-GAA-TAAAGGGGACGTTCTT-------AA-A---------AACTAT--------------T------------------T------------------AA------------------ATGCAAGCGGTTAATTA------------------A--------TTTT--------TA-ACCACATCCCCTACAGTTCCCCAT------------------AATATGTTggcctcaaacagatctatactctgaataagaacattctcatgagc
gi|12 : atttaaaattatgattggaaagagagagtgagatagagagacttagcttgttgactagtaaggtggaagttaacctttaacgtttatgaaactaagtgcagaatacacatttattccagtttatatagccaatatagacaaagaaagtatcaccaaaatccatgcaacaggaaattcacctgagaaagtatagttaaaggctcattaaacttccgaaacggtcgtttttagttttaatttaagtcagttttactcttccagatgatagaatacatgtttatttgatgacaatgatcgctgagagactttgcaaccaaaaagataaatataaagcacattataagtacataattaagaacgggttttgtttacaaatcaatgttcgtctctttccaataaacaccttcggcagaaaagggggagttataaagcttgtttggaaatgcatcggtcggtaatatatgataaatttgcttaaaagaaa------------------T------------------T------------------AA------------------A--------------TA------------------G--------TTTT--------TTTAGAACACACCCTTTA-TTCCCCCCCCCCCCACCCCCCCCCTTACTTAATTAATGAACTGGAACC---CAC-GA-----------GCTAATTAATTGCACGT--A----AGCGACGAATCGTTCATAT-ACAATCCAAAA-TAAAATTACTTTTT-TTATAAT-AACTGTACTTAAC-A------AAA--CCA--CCCTTG---GTAG---------------CCTCTCAATATTGACTGCGATAAAGAGATTCGTGACG--AT---------------AGTAT-----CATGCGTA--------TAGTT-AAA---GG-AGGATCCTGAGGAAGAACAACAAGACCAAACT-----TGTATTCCGTACTCTTTGC-T-T-TT-CAG---TACGCATTATATAAT-TAATACGCACTtcagtgtactaatgaactggaactcacgagcacataagtgaccaatcattcatataaaatcaaaaataaaatttctttttttaataactgtactaaacaaaccacccttggtaatattgactgcgataaagtgatttgtaacgtaattgcgtgtgcgaaagtatcacacgtatatgcaagggaggatcctgtgcaagagttactagacgatacttgtattctgtactcattgtttttcagtgtgtataaatgatgcaatacgtactacgttcgatacagttttattgcagacatcaatattatatattttaaacaaagaaaacccaataacgaaacataatattagtgaagccataacttttctaatcttgttaatgaaccccttatctaactgtcttaatccgcacactaccgctgcagtattcatttgtgtacttccgaacactggtggagggacagccggaaagcaaccgaa
gi|11 : atgcggCTTTCA-TATTCA-TTCAGAAAAGTAATTTGTG--GTACTAGAGA--GT
gi|12 : aaataaaatagaatgctactttcaccaAG---TGCGTA-TTAATTATATAATGCGTACTagatgaataaaattaggtttcagacttattagtaagtttaaaaaaaaagttgaaccctccccccacttttatatgcttaatgaagaaacgaaaattttaataaaaaatcatgattctatattactcttgttattatattatgacaaaacaccatcttttatggtttagtatacttgaattattaagaaattatgtaaaattgtaccgaaatgacaatacattttttttcaaagaatgtttaatttctattatgtccaaagaatactgaatgcacgt
gi|13 : atgcggttaaatagtttttttagaacacaccctttattccccccccccccacccccccccttacttaattaatgaactggaacccacgagctaattaattgcacgtaagcgacgaatcgttcatatacaatccaaaataaaattactttttttataataactgtacttaacaaaaccacccttggtagcctctcaatattgactgcgataaagagattcgtgacgatagtatcatgcgtatagttaaaggaggatcctgaggaagaacaacaagaccaaacttgtattccgtactctttgcttttcAATTTTGT-TAATGAACGCCTTA------TCTAACG--ATC---TTAA--TC-CGTACACTACCACTGCAGTATTCATTTGTATGCTATCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACTGAATAACATAAATGTAAACAAAAGTTAAAAGCACGGTCCGCTCGTCTAAGAAATACACATTTCGATCGAATTTATTTA-TTTTCT-CACA-TTTTTCAAAAACAGTCACAAAGGGGTCTACATGA-----ATGGTTTTAGCAATACTATAAACACATTTTATTCCAA-TCA----TTTTTGTAATTGTCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|16 : GGTCTGCTCGCCTAAGAAAAATATATTTTAATCGAAGTTATTTA-TTTTCT-GGC--GTTTTAAAAAACAGTCACTAATGGGTCTACAGGA-----ATGGTTTTAGCAATACTATCAACACATGTAATTACAA-TCATTTTTGTT----ATTATCAATTTGTGTGCATTTCGGAAGTTTAATGAGGCTTTaa
gi|15 : gtttCATTTCGATTGGAGTTTTTTA-TTTTATACG----TTCTTAAAAGCTGTCAATAAGGGTTTTATATGGTTGCTGTGGTTTTAGCAATACTACAAACACAT----TTATAATTTT----TGTT----ATTATTAACAGTTGTGTTTTTTGGAAGTTTAATaaga
gi|27 : acaagatgaatgtgaacagataactaaacagaacggtTTATTT---TTTAT-TGC--TT-----AAAGCAGTCAATAAAGGGTCTATAGAA-----ATGATTTtggacattttagag
gi|26 : ttttcttccTTAGCAATGTTACAAACATATTT-----TAA-TTT----CCAT----TTTTTTTAAAATTGCACCTTTCTGTAG-TTAATGGGGCTTT
gi|25 : AATACTTTAA-CACATTTAATTTCAA-TCATTTTTGTT----TTTTTC------TGTACATTTCC---GTTTAATGAGGCTaacaa
gi|4 : tAAAAATGACCATTTTGGAAGTTTAATGA-GCTTTatatagcaaatta
gi|32 : taAACAGTGTGCATTTCGGAAGTTTAATGAGGagttttaattaaagtcagctttacgcttccagatgatagaatacatgtttatttgatcactgagaaactttgcaaatgaaaaataaatataaagtccataattaaaaatggattttgtctacaaattaatgttcgactctttccaataaacacctttaggcagaaaaaggcgagttgcgcgtcagtcaattatatatgatcaactcacttcagagagaggaactgtaggggatgcagttaaaaattaaataactgcttgtggttagatagtttttaagaacttccactttattcccctcagtttatgaatgaactggaactacacaagctaatttattgcacgtaagcaacgaatcatttatatataattaaaaatgaattacttttttaataattgtactaaataaaccacccttagtagcttctccatactgattgtgataaagggatttggtactaatagggcttgtgatagtatcacgtgtgtatgcaaggaaggatcctgagcaagagttactagactaaactagtattccatactcattgtttttcagtgcgtataaataatacatgatactatgttcaatacagttttattggagacagcaatatattttcttaaaaaaagaaaacccaataacaatacataatattagtgaagccataacttttctaactgtgtttatgaaccccttatctaatggtcttaatctgcccactgccattgcagtattcatttgtgtacttccgaacattggcagaggtacagtgggaaagcaacagaatcaatacggaattacaaaaatgtaagcaaaagttaaaagcttggtccgctcatctaagaaattcacatttcaacagaagttatttatttttcttgcttttttttaaaaacagtcactaaggggtctacagaaatggttttggcaaattataaatacatttaattacaatcatttttgttattatcaaaaagtgtgcatttcagaagtttaatgaggatttaa
gi|5 : CGTTTCGGAAGTTTAATGAGCCTTTtattaat
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GTATTTCTCGGTGCGTATAATAATATGCACTGATTACGTTTGTGAAAACCATACATTTTTATCGTAGGTATATTGATTTTTAAAAGTGAAAACTAAAAAAACGATGCATAATGTTGCCTCTTTACTTGTCTTCTTAATGGACCTCTGATCCAATGGTCTTGGTCCACGTATCACCTACTTTTC
Unaligned ( gi|19 ): ACCCACCGACCCTTTTTTTTCCCTGACAAATCCCACTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCATCACTTTCATATTCATATTCATTCAGAAAACTAATTTGTGGTATTAGAGTAGTTGTTGGGATGAATAAAATTAG
Unaligned ( gi|21 ): TTTTTGGACAAAATCACACTTACATGCTACTTTCACCACTTTCATATTCTTTCAGAAAACTTATTTGTGGTATTAGAGTAGTATTGTTGTTGTGATGGATAAAATTAGGATTCAGACTTATTAGGAAGTTATTTGAAACGCTAGGTTTTA
Unaligned ( gi|22 ): CGACCCTGTATTTTTTTTGACAAAATCACAACTTAAATGGTTGAAATTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTTGTATAAGAGTAGTTGTTGTGATGAATAAAATTA
Unaligned ( gi|23 ): TACCCACTGACCCTGTTTTTTTGTTGATAAAATCACACTTACATGGTTGGATTTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACAAACTTATTTGTGGTATTAGAA
Unaligned ( gi|24 ): AGTCATGACGCATGTTAAGAATTGGACAACAATCAAATTTCATGAATTTCAAGAGTAACATGGTATGGGTGGGGAGGGAGGGGGGTTGTAGGGGATGTGTTTAGAAATAATCAAGCCACTTG
Unaligned ( gi|28 ): TATTACAAACACATTTAATTTCAATCATTTTTGTTATTAACCAAAATTTTTGTTTT
Unaligned ( gi|29 ): CTAGTCTTATTGATGGGCCTCTGACCCAACGATCTTAGCCCGTTTTTCGTTT
Unaligned ( gi|30 ): CGTAACTAACCTTAACTCAACGGCCTAAATACGTAACTAACAT
Unaligned ( gi|31 ): TTATCTTGGTATAATCTGGATATCATCATTATTAGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 111111 111111 1111111111 2222222222222 1111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 11111111 222222222222222222 111111111 1111111111 11111111 111111111111 11111 1111 222222222222222222 3333333333 1111111111 11 11111
lowQualScore : 7777777777 4 777 666666666 3 4 333333 55 000000 3 55 6 0 7777 7 666 3 5555555555 3 3 3 1 3 44444 2 0 3 3 3 0 44 3 3 6666 44 1111111111111 0 0 0000000 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222 22222222 3 444444444444444444 1 3 9999999 3 666 7777 11 2 99999 333333333 3 3 5555555555 33333333 999999999999 3 1 99999 55 11111 0000 4 8 777 4 4 55 2 000000000000000000 4 9999999999 4 9999 66 3 777 9999999999 4 66 4 0 3 4 4 1 9999 66 777 66 4 5 1 0 1 5 5 33 66 1 44444 4 2 4 4 6 2
lowQualScore : .......... . ... ......... . . ...... .. ...... . .. . . .... . ... . .......... . . . . . ..... . . . . . . .. . . .... .. ............. . . ....... . ........................................................................................................... ........ ........ . .................. . . ....... . ... .... .. . ..... ......... . . .......... ........ ............ . . ..... .. ..... .... . . ... . . .. . .................. . .......... . .... .. . ... .......... . .. . . . . . . .... .. ... .. . . . . . . . .. .. . ..... . . . . . .
lowQualScore : 5555555555 0 000 000000000 9 0 999999 00 555555 6 00 5 1 7777 3 444 6 9999999999 3 2 1 0 8 44444 1 2 1 2 1 4 66 3 3 8888 99 7777777777777 1 2 0000000 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111 11111111 3 666666666666666666 4 6 6666666 6 444 7777 22 8 88888 777777777 6 6 9999999999 22222222 666666666666 6 4 11111 55 11111 9999 0 0 000 0 9 55 5 333333333333333333 4 4444444444 4 4444 11 4 888 4444444444 4 11 4 9 9 4 4 4 4444 11 888 11 4 7 0 7 8 7 7 66 77 0 33333 4 6 4 6 2 9
consensus : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACA-GTTTTATTGCAGACATCAATAT-T-AT-ATA-T-TT----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACACATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
Reference ( family-17 ) : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATNAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACA-GTTTTATTGCAGACATCAATAT-T-AT-ATAAT-TT----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGCTCGGTCCGCTCGTCTAAGAAATACACATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACANGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCGTTTCGGAAGTTTAATGAGGCTTT
gi|1 : AAGGCTCATTAAACTTCCG---------TTTTTAGTTTTAATTTAAGTC----------AGATTTATTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------TACTGAGAGAT-TGTGCAAACGAAAA-A----ATAAATATA--A------AGCA-A--ATTATTAGTACATAATTAAG----AACAGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTCTCTTTCCGATAAACACTTTC-GGCAAAAAAGGGGGAGTTACTAAG-CTTGTGAGGAAACG--CGTCGGTCGGTAA-----------------CACTTC-AG-AC---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTTTATATTGAA-T---------AACTGCTTGCTG--------T------------------T------------------CG------------------AT------------------AG--------TTTT--------TA--GAACATCCCCTTTATTCCC------------------TTCAGT-----AATGAACTTGAGCC-CACAAGCCAATTTATTGCACGTA-AGA---GACGAATCATTT----ATATAAGATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------ACCC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAGTAGCGTG-TGCGATAGTAT-----CACGCATATATGCAAG--GGAGGATCCTGAACAAGAGTAATTAGACCAAACTAG-----TATTCCGTACTCATTG--T-TGTT-CAG---TGCGTA-TAAATAATAT--AATGAGTACTATATC--------CG--------ATACA-GTTTTATTGCAAACATCAGTTT-A-ATAATAAT-AA----A--AAAAAA---GAAA----------ACC-CAATAAAGATA--CATAA-TATTAATGAAGCCATAACTTTTCTAAT
gi|10 : ttttttgacaaaatcacacttacatggttgaatttttagaaacaaaataaattagaatgctactttcaccactttcatattcattcagaaaacttatttttggtataagagtagttgttgtggcgaataaaattaggattcagacttataaggaagttattaggaatgctaggttttaacactaacttttatatgctttaatgaagaatcgaaaatttttaataaaaaaaaatataatttctatttattgctcttgttattaattaatattcctatatattatgacaaacaccatattttttggtttaatatactttaattattaTGAACACCTTT-AGCATAAAACTGGGAGTCGCGAAA-CCTGATTGGAATCA--CGTTGGTCGGTAATTTT-ATGCTC--ATTTAATTTCAAG-AATGTAG-TAACACAGCATGGG-------------GGATTGTTGGTGATGTGTTT-------AG-A---------AATTGATAAGACATTCGTGGT------------------T------------------AA------------------AT------------------AG--------TTTC--------------ACACCCCTTTTATTCTC------------------CGCAGTGTAT-----------------ACAAGCT-ATT--TTGCA--TAGAGCGGTGATGAATCATTC----ATATGAAAATAATAATAAAA--------------AAAAAATGTATTAAACA-A------AAAA-AACT-TTG----------TTAGCC--------TCTCAATATTGACTGTGAGAAAGTGATT------TATTC-ATTATGAAATATCACACT----TAATAT-----CA----TCTATGAGAT--GACAGATTCTGAGCGAAA
gi|12 : tgattaaaatcataatttttagctcaccATGCGGTT-------AA-A----------------------------------------------------------------------------------------T------------------AG--------TTTT--------TTTAGAACACACCCTTTATTCCCCCCCCCCCCACCCCCCCCCTTACTTAATTAATGAACTGGAACC-CACGAGCTAATTAATTGCACGTA-AGC---GACGAATCGTTC----ATATACAATCCAAAATAAAATTACTTTTTTTAT-AATAACTGTACTTAACA-A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGAGATT------C-----GTGA---------------CGATAGTAT-----CATGCGTATAGTTAAA--GGAGGATCCTGAGGAAGAACAACAAGACCAAACTTG-----TATTCCGTACTCTTTGC-T-T-TT-CAG---TACGCATTATATAAT-T--AATACGCACTtgaccacatgttatgaaaagataaaactttttttcattcaaacatgtttttaaatgcgccaaatatcac
gi|13 : AATTTTGT-TA-ATGAACGCCTTA----TCTAACG--ATC---TTAA--TC-CGTACACTACC-ACTGCAGTATTCATTTGTATGCTATCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACTGAATAACATAAATGTAAACAAAAGTTAAAAGCACGGTCCGCTCGTCTAAGAAATACACATTTCGATCGAATTTATTTA-TTTTCT-CACA-TTTTTCAAAAACAGTCACAAAGGGGTCTACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTTTATTCCAATCATTTTTGTAATT-GTCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|14 : AAGGCTCATTCAACTTTTGAAACGTTCATTTTTTGTTACAGTCTACATC----------CATTTTACTC-TTCA---AGTTCATAGATTCCATGTTTATTTGAT---------GAATGAGA-ACATATGCAAATGAAAATATACCATAAATATACCA------TGCATC--AGTTTCAG----TAATTGTG----AATGGGTATT---TGTTTTT-GCAT----------CAATGGTCGCCTCTTTCCGATAACCACCTTC-AGAAGAAAAC-----------AAGCCTTGCTCAGAATCA--CATaa
gi|15 : tcctgaCATTTCGATTGGAGTTTTTTA-TTTTATACGT--TCTT--AAAAGCTGTCAATAAGGGTTTTATATGGTTGCTGTGGTTTTAGCAATACTACAAACACA-TTTA-------TAATTTTTGTTATT-ATTAACAGTTGTGTTTTTTGGAAGTTTAATtattcctttattt
gi|16 : acaagatgaatgtgaacagataactaaacagaacggtGTTTGGTCTGCTCGCCTAAGAAAAATATATTTTAATCGAAGTTATTTA-TTTTCT-GGC--GTTTTAAAAAACAGTCACTAATGGGTCTACAGGA-----ATGGTTTTAGCAATACTATCAACACA-TGTAATTACAATCATTTTTGTTATT-ATCAATTTGTGTGCATTTCGGAAGTTTAATGAGGCTTTtggacattttagag
gi|17 : GTCTATCGGCTA-TAT-ATGCTC--AATTCATTTC-AG-AT---AGCAAACATAGCATGGG-------------G--CTGTATGGGATGT-GTT-------GA-ATATGGGATGAA------------------T------------------T------------------AA------------------AT------------------AGCCGCTTGCTTTTGTCGCATGCA-AGAGCATCACTTTTATTGGC------------------CTCAaaga
gi|18 : cgcaaata--T-T-CT-CGG---TGCGTA-TA-ATAATATGCACTG---ATTACGTT--------TGTGAAAACCATACA-TTTTTATCGTAGGT----ATAT-T-G--AT--T-TT----T--AAAAGT---GAAA----------ACTAAAAAAACGATG--CATAA-TGTT------GCC-T--CTTTACTTGTCTTCT-TA-ATGGACCTCTGA----TCCAATG--GTC---TTGG--TC-CACGTATCACCTACTaacagatctatactctgaataagaacattctcatgagc
gi|2 : gtatAAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGATGACAATGATCGCTGAGAGAC-TTTGCAACCAAAAA-G----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------CAATGTTCGTCTCTTTCCAATAAACACCTTC-GGCAGAAAAGGGGGAGTTATAAAG-CTTGTTTGGAAATG--CATCGGTCGGTAA-TAT-ATGATA--AATTTGCTTA-AA-AG---AA-AAACATATTATGGG-------------GAACTGTAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AATTAACCGCTTGCATTTAAAT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------CTCAGTGTACTAATGAACTGGAACT-CACGAGC-----------ACATA-AGT---GACCAATCATTC----ATATAAAATCAAAAATAAAATTTCTTTTT---TTAATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTA----------------ATATTGACTGCGATAAAGTGATT------T-----GTAACGTAATTGCGTG-TGCGAAAGTAT-----CACACGTATATGCAAG--GGAGGATCCTGTGCAAGAGTTACTAGACGATACTTG-----TATTCTGTACTCATTG--T-T-TTTCAG---TGTGTA-TAAATGATGC--AATACGTACTACGTT--------CG--------ATACA-GTTTTATTGCAGACATCAATAT-T-AT-ATATT-TT----A--AACAAA---GAAA----------ACC-CAATAACGAAA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACT--GTC---TTAA--TC-CGCACACTACC-GCTGCAGTATTCATTTGTGTACTTCCGAACACTGGTGGAGGGACAGCCGGAAAGCAACCGAtttc
gi|20 : atttaaaattatgattggaaagagagagtgagatagagagacttagcttgttgactagtaaggtggaagttaacctttaacgtttatgaaactaagtgcagaatacacatttattccagtttatatagccaatatagacaaagaaagtatcaccaaaatccatgcaacaggaaattcacctgagaaagtatagttaATA--A------AACA-CGGACTACT--TTCAAAATTAGGTTGGACCACGT-TTGTTTGTTTACCAAATGTGCACAGGCTAATTACCGTCACTTTCCGGTAAAGAACTTC-GACAGCATACGTGGAGCCACGAGG-CGCGTTTAGAATCA--GAACTTTCGATAA-TTT-ATAATa
gi|24 : aaAGTCATGACG-CATGTTAAGAATTGGACAACAATCA--AA-TTTCATGA---------ATTTC-A--AG---AG-TAACATGGTATGGGTGGGGAGGGAGGGGGGTTGTAGGGGATGTGTTT-------AG-A---------AA------------------T------------------
gi|25 : AATACTTTAA-CACA-TTTAATTTCAATCATTTTTGTTTTT-TTC------TGTACATTTC---CGTTTAATGAGGCTaatcaagccacttg
gi|26 : tTTAGCAATGTTACAAACATATTTTAATTTC---CATTTTTTTT--------AAAATTGCACCTTTCTGTAG-TTAATGGGGCTTTatatagcaaatta
gi|27 : TTATTT---TTTAT-TGC--TT-----AAAGCAGTCAATAAAGGGTCTATAGAA-----ATGATTTaacaa
gi|28 : ttttcttccTATTACAAACACA-TTTAATTTCAATCATTTTTGTTATTAACCAAAA
gi|3 : AAGGCTCATTAAACTTCCGAAACGGTCATTTTTAGTTTTAATTTAAGTG----------AGTTTAACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGACAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACTGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGACAAACACCTTC-GGCAGAAAATGGGGAATTACGAAG-CTTATTTGGAAACG--CATTGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AG-AG---AA-AAACATAGTATGGG-------------GAACTGAAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------TGCAGTGTATTAATGAACCGGAACC-CACGA-----------GCACCTA-AGC---GACGAATTGTTC----ATATAAAATC-AAAATAAAATTACTATTT---T-AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAACC--------TCTCAATATTGACTTCAATAAAGTGATT------T-----GTGACGTAATAGCGAG-TGAAA-AGTAT-----CACGTGTATATGAAAG--GCAGGTTCCTGAGCAAGAGTTACTTGACCAAACTAA-----TATTCCATACTCATTG--T-T-TC-CAG---TGCGTA-TAAATAATAT--AATACGTACTACCTT--------AG--------ATACA-GTGTTATTGCTGACATCAATAT-T-AT-ATAAT-TT----A--AACAAA---GAAA----------ATC-CAATAACGATA--CATAA-TATTAAAGAAGCTATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTAAAGGTCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAATATTTGTGTGTGTACTTCCGAAGACTGGCAGAGGGACAGTCGGAAAGCAACGGAGTCATTACCAAATTACAAAAATGTAAACAAAAGTTAAAAGTGCGGTCCGCTCGTCCAAGAAACACACATTTTGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTTAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTATAATCA----TAATATT-ATCAAAAAGTGTGCATTTCTGAAGTTTAATGAGGCTTTtttttgtttt
gi|32 : AACAGTGTGCATTTCGGAAGTTTAATGAGG
gi|4 : AAAGCTCATTAAACTTCCAAAATGGTCATTTTTAGTTTTAATTAAAGTC----------AGCTTTACGC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAAAC-TTTGCAAATGAAAA-A-----TAAATATA--A------AG--------------TCCATAATTAAA----AATGGAT-TT---TGTCTAC-AAAT----------TAATGTTCGACTCTTTCCAATAAACACCTTTAGGCAGAAAAAGGCGAGT----------TG--------CG--CGTCAGTCAATTA-TAT-ATGATC--AACTCACTTC-AG-AG---AG-A------------G-------------GAACTGTAGGGGATGCAGTT-------AA-A---------AA------------------T------------------T------------------AA------------------ATAACTGCTTGTGGTTAGATAG--------TTTT--------TA-AGAACTTCCACTTTATTCCC------------------CTCAGTTTATGAATGAACTGGAACTACACAAGCTAATTTATTGCACGTA-AGC---AACGAATCATTT----ATATATAATTAAAAATGAA-TTACTTTTT---T-AATAATTGTACTAAAT--A------AACC-ACCC-TTA----------GTAGCT--------TCTCCATACTGATTGTGATAAAGGGATT------T-----GGTAC-TAATAGGGCT-TGTGATAGTAT-----CACGTGTGTATGCAAG--GAAGGATCCTGAGCAAGAGTTACTAGACTAAACTAG-----TATTCCATACTCATTG--T-T-TTTCAG---TGCGTA-TAAATAATAC--A-TG-ATACTATGTT--------CA--------ATACA-GTTTTATTGGAGACAGCAATAT---AT-TT--TCTT----A--AAAAAA---GAAA----------ACC-CAATAACAATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAACTGTGT-TT-ATGAACCCCTTA----TCTAATG--GTC---TTAA--TC-TGCCCACTGCC-ATTGCAGTATTCATTTGTGTACTTCCGAACATTGGCAGAGGTACAGTGGGAAAGCAACAGAATCAATACGGAATTACAAAAATGTAAGCAAAAGTTAAAAGCTTGGTCCGCTCATCTAAGAAATTCACATTTCAACAGAAGTTATTTATTTTTCT-TGCTTTTTTTTAAAAACAGTCACTAAGGGGTCTACAGAA-----ATGGTTTTGGCAA-ATTATAAATACA-TTTAATTACAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCAGAAGTTTAATGAGGATTTtattaat
gi|5 : taAAGGCTCATTAAACTTCCGAAACGATCGTGTTTAGTTTTAATTTAAGTC----------AGTTTTGCTC-TTCC---AGATGATAGAATACATGTTTATTTAAT---------CACTGACAGAC-TTCGCAAACGAAAA-------TAAAAATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGAGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGCTTCGAAG-CCTGTTTGGAAACA--CGTTGGTCGGTAA-TTT-ATGATC--AATTCACTTC-AG-AA---AG-AAAAATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A-----------------------------T------------------T--------------------------------------------------------------------TTTT--------T-------------TTTATTCCC------------------CTCGGTGTATTCATGAACTGGAACC-CACGAGC-----------ACGTA-AGC---GACGAATCGTTC----ATATAACATCAAAAATGAAATTAATTTGT---G-ATTAACTGTACTTAAC--A------AGCT-ACCC-TTG----------ATAGCC--------TCTCAATACTGACTGCGATAAAGTGATC------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAA--GAAGGACCCTGAGCAAGAGTTGCTAGACAAAACTAG-----TATTCCGTATTCATGG--TAT-TT-CAG---TGCGTA-TATATAATAA--AATGCGTTCTACATT--------CG--------ATACA-GTTTTATTGCAGTCATCAATATAT-AT-ATA-T-TT----A--AAAAAAAAAGAAA----------ACC-CAAGAATAATA--CATAA-TATTAATGAAGCCATAACTTTTCTAATCTTTTCTA-ATGGACCCCTTA----TCTAACG--GTC---TTAA--TC-CACACACTACC-ACTGCAGTATTCATTTGTGTACTTTCGAACACTGGTGGAGGTACAATCGGAAAGCAACTGAGTCACTATGGAATTACAAAAACGTAAACAAAAGTTAAGAGTTCGGTCCGCTCGTCTAAGAAAGACACATTTCGATCGAAATTATTAA-TTTTCA-CGC--TTTTTCAAAAACAGTCGCTAAGGTGTATACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTCAATTGCAATCATTTTTGTTATT-ATC--AAAGTGTGCGTTTCGGAAGTTTTATGAGGCTTTaa
gi|6 : taCCCAGTAAACTTCCGAAACGGTCGTTTTTAGTTT--------ATC----------AGTTTTTCTC-TTCC---AGATGATAGAATACATGTTTGTTTGAT---------CACTGAGAAAC-TTTGCAATCGAAAA-A----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTAAC-AAAT----------TAATGTTTTTCTTTTTCCGATAAACACCTTC-GGCATAAAACGGGAAGTTACGAAG-CTTGTTCGGA----------------------T-ATGATT--AATTCGCTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCAGTT-------GA-A---------AA------------------T------------------T------------------AA------------------ATAACCGCTTGCGGTTAGATAG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGGACC-CACGAGCTAATTTGTTGCACAAA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT-----AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAGCC--------TCTCAATATTGACTAAGATAAAGTGATA------T-----GTGACGTAATAGCGCG-TATGATAGTAT-----CACGCGTATATATAAA--GGATGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TACTCCGTACTCATT--------T-CAG---TGCTTA-TACATAATAT--AATGCGTACTTCGTT--------CG--------ATACATTTTTTATTGCAGACATCAATAT-T--T-TT--T-TT----AAGAAGAAA---GAAA----------ACC-CAAAAACGATA--CATAA-TATCAGTGAAGCCATAACTTTTCGAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCGGTATTCATTTGTGTACTTCCGAACACTAGCGGAGGTACATTCGGAAAGCAACCGGGTCATTATGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAATACACATTTaac
gi|7 : GGCTCATTAAACATCCGAACCAGTTGTTTTAAGTTATAATTTAAGTCTTTATTTTCAAGGTTTGTTC-TTCC---AGAGAATAGATTATATGTTTATTTGAT---------CACTGAGAAAG-TTTGCAAATGAAAATA----ATAAATATA--ATGTACCAGCA-C--GTTATT-CTAAATAATTATG----AACGGGT-TT---GGTTTGC-AAGT----------TAATGGTCGTCTCTTTCCAATAAACGC------ACAGAAAATGGCGAGTCATGAAG-CTTTTTCCGAATAG--CGCCGGTTGCTAA-TGT-ATACAC--AATTCATTAC-AATAG---GG----CACCGCATGGG-------------GGATTGTAGGGGATGTGTTT-------AG-A---------AA------------------TTATCAAGCTGCTAGTGGCT------------------AG------------------AT------------------AG--------TAAT--------TA-AACACATCTCTTTTATTCTT------------------AACAGTGTTTTAATAAACTTGTACT-CACAAGCTAATATATTAT------AGT---GACGAATCGTTC----ATATAAAAATAAAAATAAAATTA--TTTT---T-AGTAACTGTAGCAAGA--ACTTTCTAACTAACTCATTGACTGTAATAAGTAGCTTGATAGCGTCTCAATATTGACTGCAAGAAAGTGATT------T-----GTTACATATTAGCACA-TACAAGATTATAAATACATTTGTATATATAAGATGGCGGTTCCTGAGCAAATGTTACCTGATCAAACTAGCACAATATT-GGTACTCATTG--TAT-TT-CAGACTTG-GAA-TAAAAAATGT---ATGCCGCCTACGCTAGTGAAAACA--------ATATA-TTTTTAT--CAGATATCAATAT-TCAT-TT--T-TTCAACA--AAAAAA---AAAATTATTTTTTCACT-CACTAACGATAATTATAATTTTTTCTCCAGCCATAATTTTACTTCTCCATT-TA-ATGGACCCCTGA----TCCAAC----TC---TCAA--TC-AGCACAATACattg
gi|8 : atTCATTAAACTTCAAAAACGGTCGTTTTTAGTTTGAATTTGTTTC----------AGTTTTATTC-TTCC---AGATGATAGAATACATGTTTATT-GAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACAAATTTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTTTCTTTCCGATAA-CACCTTC-GGGAGAAAACGAGGAGTTACGAAG-CTT-TTCGGAAA-G--CGTCGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AT-TC---GG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AAGTTACCGCTTGCGATGATAT------------------AG--------TTTT--------TA-AGAACATCTCCTTTATTCTT------------------CTCAGTGAATTAATGAAC------C-CACGAGCTAATTTACTGCACGTA-AGC---GACGAATCGTTC----ATATTAGATTAAAAATAACATTATTTTCT---T-AATAACTGTTCCAAAT--A------AACC-ACCC-TTG----------GTAGCC--------TGTCAGTATTGACTGTGATCAAGTTATT------T-----TAGACGTAATAGTGCG-TGCGATAGTAT-----CACGCGTATAAGCAAG--GGAGGATCCTGAGTAAGTGTTACTAGACCAAACTAG-----TATTCCGTACTCATTGTTT-T-TT-CAG---TGCGTA-TATATAATAT--AATGCGTACTACGTT--------CG--------ATACA-GTTTTATTGCAGACATCAATAC---------AT-TT----A--AA--------AAA----------ATC-CAATAACGATA--CATAA-TATCAGTGAAGTCATAAC-TTTCCAACCCC-T-TACATG-------TA----TCTAACGGTGTCACGTTAGATTCACGCGCACTACatgcttttcactta
gi|9 : AAGGGACATTAAACATCCCAAACAGTCCCTTTT--TTATCATTTAAGTC----------AGTTTTACTCCTTCCTTCAGATGACAGATTACAT-TTTATTTGAC---------CACTGAGAAAG-TATGCAAAAGGAAA-A----ATAATTATA--A------CATA-C--ATTACT--TTTATAATTGTG----AACGAGTGTT---TGTTAAA-ATAT----------TAATGGTCATCTCTTTCTGATA---------------AAAACGGGGAGTCACAAAG-CATATTGGGAATCG--CGTC-ACCAGTAA-TTT-AAGTTTTAAAGT-ATTT---G-TC---AA-TAACACAGTATGGGA------------GGAATGTAGGGGATGT-GTT-------AAGA---------GA------------------T------------------TATCAAGCCAGTTGTGGTGAA------------------GC------------------AG--------TTTT--------TA-AACACATCCCCTACATTCTC------------------CTCAGTGTATTATTGAGCTTGAACC-CTCAAGCTGAATTATTGCATGGA-AGC---AATCAATCACTCATGAATATAAAA-ATAAAATAAAA-------TT---T-AACAGCTGCACTTAACAAA------AATC--CCC-TAG----------GTAGCC--------TCTCAATACTGACAGCGAGGACGTGATCAGAGCATACTAGGTAACATAATAATGCA-TGCAACAGAAT-----CAggaaagtccacgctatatg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAAGTAATTTGTGGTACTAGAGAGTAGATGAATAAAATTAGGTTTCAGACTTATTAGTAAGTTTAAAAAAAAAGTTGAACCCTCCCCCCACTTTTATATGCTTAATGAAGAAACGAAAATTTTAATAAAAAATCATGATTCTATATTACTCTTGTTATTATATTATGACAAAACACCATCTTTTATGGTTTAGTATACTTGAATTATTAAGAAATTATGTAAAATTGTACCGAAATGACAATACATTTTTTTTCAAAGAATGTTTAATTTCTATTATGTCCAAAGAATACTGAATGCACGT
Unaligned ( gi|19 ): ACCCACCGACCCTTTTTTTTCCCTGACAAATCCCACTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCATCACTTTCATATTCATATTCATTCAGAAAACTAATTTGTGGTATTAGAGTAGTTGTTGGGATGAATAAAATTAG
Unaligned ( gi|21 ): TTTTTGGACAAAATCACACTTACATGCTACTTTCACCACTTTCATATTCTTTCAGAAAACTTATTTGTGGTATTAGAGTAGTATTGTTGTTGTGATGGATAAAATTAGGATTCAGACTTATTAGGAAGTTATTTGAAACGCTAGGTTTTA
Unaligned ( gi|22 ): CGACCCTGTATTTTTTTTGACAAAATCACAACTTAAATGGTTGAAATTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTTGTATAAGAGTAGTTGTTGTGATGAATAAAATTA
Unaligned ( gi|23 ): TACCCACTGACCCTGTTTTTTTGTTGATAAAATCACACTTACATGGTTGGATTTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACAAACTTATTTGTGGTATTAGAA
Unaligned ( gi|29 ): CTAGTCTTATTGATGGGCCTCTGACCCAACGATCTTAGCCCGTTTTTCGTTT
Unaligned ( gi|30 ): CGTAACTAACCTTAACTCAACGGCCTAAATACGTAACTAACAT
Unaligned ( gi|31 ): TTATCTTGGTATAATCTGGATATCATCATTATTAGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 111111 111111 1111111111 2222222222222 1111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 11111111 222222222222222222 111111111 1111111111 11111111 111111111111 11111 1111 222222222222222222 11111111 11111 1111111111 11 11111
lowQualScore : 7777777777 4 777 666666666 3 4 333333 55 000000 3 55 6 0 7777 7 666 3 5555555555 3 3 3 1 3 44444 2 0 3 3 3 0 44 3 3 6666 44 1111111111111 0 0 0000000 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222 22222222 3 444444444444444444 1 3 9999999 3 666 7777 2 2 99999 333333333 3 3 5555555555 33333333 999999999999 3 1 99999 55 11111 0000 4 8 777 4 4 55 2 000000000000000000 4 0 777 22222222 55555 66 3 777 9999999999 4 66 4 0 3 4 4 1 9999 66 777 66 4 5 1 1 77 5 5 33 66 0 44444 4 2 4 4 2
lowQualScore : .......... . ... ......... . . ...... .. ...... . .. . . .... . ... . .......... . . . . . ..... . . . . . . .. . . .... .. ............. . . ....... . ........................................................................................................... ........ ........ . .................. . . ....... . ... .... . . ..... ......... . . .......... ........ ............ . . ..... .. ..... .... . . ... . . .. . .................. . . ... ........ ..... .. . ... .......... . .. . . . . . . .... .. ... .. . . . . .. . . .. .. . ..... . . . . .
lowQualScore : 5555555555 0 000 000000000 9 0 999999 00 555555 6 00 5 1 7777 3 444 6 9999999999 3 2 1 0 8 44444 1 2 1 2 1 4 66 3 3 8888 99 7777777777777 1 2 0000000 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111 11111111 3 666666666666666666 4 6 6666666 6 444 7777 1 8 88888 777777777 6 6 9999999999 22222222 666666666666 6 4 11111 55 11111 9999 0 0 000 0 9 55 5 333333333333333333 4 8 888 66666666 66666 11 4 888 4444444444 4 11 4 9 9 4 4 4 4444 11 888 11 4 7 0 0 99 7 7 66 77 7 33333 4 6 4 6 9
consensus : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-NTTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
Reference ( family-17 ) : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-ATTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|1 : AAGGCTCATTAAACTTCCG---------TTTTTAGTTTTAATTTAAGTC----------AGATTTATTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------TACTGAGAGAT-TGTGCAAACGAAAA-A----ATAAATATA--A------AGCA-A--ATTATTAGTACATAATTAAG----AACAGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTCTCTTTCCGATAAACACTTTC-GGCAAAAAAGGGGGAGTTACTAAG-CTTGTGAGGAAACG--CGTCGGTCGGTAA-----------------CACTTC-AG-AC---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTTTATATTGAA-T---------AACTGCTTGCTG--------T------------------T------------------CG------------------AT------------------AG--------TTTT--------TA--GAACATCCCCTTTATTCCC------------------TTCAGT-----AATGAACTTGAGCC-CACAAGCCAATTTATTGCACGTA-AGA---GACGAATCATTT----ATATAAGATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------ACCC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAGTAGCGTG-TGCGATAGTAT-----CACGCATATATGCAAG--GGAGGATCCTGAACAAGAGTAATTAGACCAAACTAG-----TATTCCGTACTCATTG--T-TGTT-CAG---TGCGTA-TAAATAATAT--AATGAGTACTATATC--------CG--------ATACAGTTTT-ATTGCAAACATCAGTTTAAT-AATA--ATAA-----A--AAAAAA---GAAA----------ACC-CAATAAAGATA--CATAA-TATTAATGAAGCCATAACTTTTCTAAT
gi|10 : ttttttgacaaaatcacacttacatggttgaatttttagaaacaaaataaattagaatgctactttcaccactttcatattcattcagaaaacttatttttggtataagagtagttgttgtggcgaataaaattaggattcagacttataaggaagttattaggaatgctaggttttaacactaacttttatatgctttaatgaagaatcgaaaatttttaataaaaaaaaatataatttctatttattgctcttgttattaattaatattcctatatattatgacaaacaccatattttttggtttaatatactttaattattaTGAACACCTTT-AGCATAAAACTGGGAGTCGCGAAA-CCTGATTGGAATCA--CGTTGGTCGGTAATTTT-ATGCTC--ATTTAATTTCAAG-AATGTAG-TAACACAGCATGGG-------------GGATTGTTGGTGATGTGTTT-------AG-A---------AATTGATAAGACATTCGTGGT------------------T------------------AA------------------AT------------------AG--------TTTC--------------ACACCCCTTTTATTCTC------------------CGCAGTGTAT-----------------ACAAGCT-ATT--TTGCA--TAGAGCGGTGATGAATCATTC----ATATGAAAATAATAATAAAA--------------AAAAAATGTATTAAACA-A------AAAA-AACT-TTG----------TTAGCC--------TCTCAATATTGACTGTGAGAAAGTGATT------TATTC-ATTATGAAATATCACACT----TAATAT-----CA----TCTATGAGAT--GACAGATTCTGAGCGAAA
gi|12 : tgattaaaatcataatttttagctcaccATGCGGTT-------AA-A----------------------------------------------------------------------------------------T------------------AG--------TTTT--------TTTAGAACACACCCTTTATTCCCCCCCCCCCCACCCCCCCCCTTACTTAATTAATGAACTGGAACC-CACGAGCTAATTAATTGCACGTA-AGC---GACGAATCGTTC----ATATACAATCCAAAATAAAATTACTTTTTTTAT-AATAACTGTACTTAACA-A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGAGATT------C-----GTGA---------------CGATAGTAT-----CATGCGTATAGTTAAA--GGAGGATCCTGAGGAAGAACAACAAGACCAAACTTG-----TATTCCGTACTCTTTGC-T-T-TT-CAG---TACGCATTATATAAT-T--AATACGCACTtgaccacatgttatgaaaagataaaactttttttcattcaaacatgtttttaaatgcgccaaatatcac
gi|13 : AATTTTGT-TA-ATGAACGCCTTA----TCTAACG--ATC---TTAA--TC-CGTACACTACC-ACTGCAGTATTCATTTGTATGCTATCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACTGAATAACATAAATGTAAACAAAAGTTAAAAGCACGGTCCGCTCGTCTAAGAAATACA--CATTTCGATCGAATTTATTTA-TTTTCT-CACA-TTTTTCAAAAACAGTCACAAAGGGGTCTACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTTTATTCCAATCATTTTTGTAATT-GTCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|14 : AAGGCTCATTCAACTTTTGAAACGTTCATTTTTTGTTACAGTCTACATC----------CATTTTACTC-TTCA---AGTTCATAGATTCCATGTTTATTTGAT---------GAATGAGA-ACATATGCAAATGAAAATATACCATAAATATACCA------TGCATC--AGTTTCAG----TAATTGTG----AATGGGTATT---TGTTTTT-GCAT----------CAATGGTCGCCTCTTTCCGATAACCACCTTC-AGAAGAAAAC-----------AAGCCTTGCTCAGAATCA--CATaa
gi|15 : tcctgaCTAAACAGAACGGTCATTTCGATTGGAGTTTTTTA-TTTTATACGT--TCTT--AAAAGCTGTCAATAAGGGTTTTATATGGTTGCTGTGGTTTTAGCAATACTACAAACACA-TTT-------ATAATTTTTGTTATT-ATTAACAGTTGTGTTTTTTGGAAGTTTAATtattcctttattt
gi|16 : acaagatgaatgtgaacagataaGTTTGGTCTGCTCGCCTAAGAAAAATA--TATTTTAATCGAAGTTATTTA-TTTTCT-GGC--GTTTTAAAAAACAGTCACTAATGGGTCTACAGGA-----ATGGTTTTAGCAATACTATCAACACA-TGTAATTACAATCATTTTTGTTATT-ATCAATTTGTGTGCATTTCGGAAGTTTAATGAGGCTTTtggacattttagag
gi|17 : GTCTATCGGCTA-TAT-ATGCTC--AATTCATTTC-AG-AT---AGCAAACATAGCATGGG-------------G--CTGTATGGGATGT-GTT-------GA-ATATGGGATGAA------------------T------------------T------------------AA------------------AT------------------AGCCGCTTGCTTTTGTCGCATGCA-AGAGCATCACTTTTATTGGC------------------CTCAaaga
gi|18 : cgcaaata--T-T-CT-CGG---TGCGTA-TA-ATAATATGCACTG---ATTACGTT--------TGTGAAAACCATACATTTTT-ATCGTAGGTAT-------AT-TG-AT-TTTT-----A--A-AAGT---GAAA----------ACTAAAAAAACGATG--CATAA-TGTT------GCC-T--CTTTACTTGTCTTCT-TA-ATGGACCTCTGA----TCCAATG--GTC---TTGG--TC-CACGTATCACCTACTaacagatctatactctgaataagaacattctcatgagc
gi|2 : gtatAAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGATGACAATGATCGCTGAGAGAC-TTTGCAACCAAAAA-G----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------CAATGTTCGTCTCTTTCCAATAAACACCTTC-GGCAGAAAAGGGGGAGTTATAAAG-CTTGTTTGGAAATG--CATCGGTCGGTAA-TAT-ATGATA--AATTTGCTTA-AA-AG---AA-AAACATATTATGGG-------------GAACTGTAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AATTAACCGCTTGCATTTAAAT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------CTCAGTGTACTAATGAACTGGAACT-CACGAGC-----------ACATA-AGT---GACCAATCATTC----ATATAAAATCAAAAATAAAATTTCTTTTT---TTAATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTA----------------ATATTGACTGCGATAAAGTGATT------T-----GTAACGTAATTGCGTG-TGCGAAAGTAT-----CACACGTATATGCAAG--GGAGGATCCTGTGCAAGAGTTACTAGACGATACTTG-----TATTCTGTACTCATTG--T-T-TTTCAG---TGTGTA-TAAATGATGC--AATACGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-ATTTT----A--AACAAA---GAAA----------ACC-CAATAACGAAA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACT--GTC---TTAA--TC-CGCACACTACC-GCTGCAGTATTCATTTGTGTACTTCCGAACACTGGTGGAGGGACAGCCGGAAAGCAACCGAtttc
gi|20 : atttaaaattatgattggaaagagagagtgagatagagagacttagcttgttgactagtaaggtggaagttaacctttaacgtttatgaaactaagtgcagaatacacatttattccagtttatatagccaatatagacaaagaaagtatcaccaaaatccatgcaacaggaaattcacctgagaaagtatagttaATA--A------AACA-CGGACTACT--TTCAAAATTAGGTTGGACCACGT-TTGTTTGTTTACCAAATGTGCACAGGCTAATTACCGTCACTTTCCGGTAAAGAACTTC-GACAGCATACGTGGAGCCACGAGG-CGCGTTTAGAATCA--GAACTTTCGATAA-TTT-ATAATa
gi|24 : aaAGTCATGACG-CATGTTAAGAATTGGACAACAATCA--AA-TTTCATGA---------ATTTC-A--AG---AG-TAACATGGTATGGGTGGGGAGGGAGGGGGGTTGTAGGGGATGTGTTT-------AG-A---------AA------------------T------------------
gi|25 : AATACTTTAA-CACA-TTTAATTTCAATCATTTTTGTTTTT-TTC------TGTACATTTC---CGTTTAATGAGGCTaatcaagccacttg
gi|26 : tTTAGCAATGTTACAAACATATTTTAATTTC---CATTTTTTTT--------AAAATTGCACCTTTCTGTAG-TTAATGGGGCTTTatatagcaaatta
gi|27 : TTATTT---TTTAT-TGC--TT-----AAAGCAGTCAATAAAGGGTCTATAGAA-----ATGATTTaacaa
gi|28 : ttttcttccTATTACAAACACA-TTTAATTTCAATCATTTTTGTTATTAACCAAAA
gi|3 : AAGGCTCATTAAACTTCCGAAACGGTCATTTTTAGTTTTAATTTAAGTG----------AGTTTAACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGACAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACTGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGACAAACACCTTC-GGCAGAAAATGGGGAATTACGAAG-CTTATTTGGAAACG--CATTGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AG-AG---AA-AAACATAGTATGGG-------------GAACTGAAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------TGCAGTGTATTAATGAACCGGAACC-CACGA-----------GCACCTA-AGC---GACGAATTGTTC----ATATAAAATC-AAAATAAAATTACTATTT---T-AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAACC--------TCTCAATATTGACTTCAATAAAGTGATT------T-----GTGACGTAATAGCGAG-TGAAA-AGTAT-----CACGTGTATATGAAAG--GCAGGTTCCTGAGCAAGAGTTACTTGACCAAACTAA-----TATTCCATACTCATTG--T-T-TC-CAG---TGCGTA-TAAATAATAT--AATACGTACTACCTT--------AG--------ATACAGTGTT-ATTGCTGACATCAAT---AT-TATATAATTT-----A--AACAAA---GAAA----------ATC-CAATAACGATA--CATAA-TATTAAAGAAGCTATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTAAAGGTCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAATATTTGTGTGTGTACTTCCGAAGACTGGCAGAGGGACAGTCGGAAAGCAACGGAGTCATTACCAAATTACAAAAATGTAAACAAAAGTTAAAAGTGCGGTCCGCTCGTCCAAGAAACACA--CATTTTGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTTAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTATAATCA----TAATATT-ATCAAAAAGTGTGCATTTCTGAAGTTTAATGAGGCTTTtttttgtttt
gi|32 : AACAGTGTGCATTTCGGAAGTTTAATGAGG
gi|4 : AAAGCTCATTAAACTTCCAAAATGGTCATTTTTAGTTTTAATTAAAGTC----------AGCTTTACGC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAAAC-TTTGCAAATGAAAA-A-----TAAATATA--A------AG--------------TCCATAATTAAA----AATGGAT-TT---TGTCTAC-AAAT----------TAATGTTCGACTCTTTCCAATAAACACCTTTAGGCAGAAAAAGGCGAGT----------TG--------CG--CGTCAGTCAATTA-TAT-ATGATC--AACTCACTTC-AG-AG---AG-A------------G-------------GAACTGTAGGGGATGCAGTT-------AA-A---------AA------------------T------------------T------------------AA------------------ATAACTGCTTGTGGTTAGATAG--------TTTT--------TA-AGAACTTCCACTTTATTCCC------------------CTCAGTTTATGAATGAACTGGAACTACACAAGCTAATTTATTGCACGTA-AGC---AACGAATCATTT----ATATATAATTAAAAATGAA-TTACTTTTT---T-AATAATTGTACTAAAT--A------AACC-ACCC-TTA----------GTAGCT--------TCTCCATACTGATTGTGATAAAGGGATT------T-----GGTAC-TAATAGGGCT-TGTGATAGTAT-----CACGTGTGTATGCAAG--GAAGGATCCTGAGCAAGAGTTACTAGACTAAACTAG-----TATTCCATACTCATTG--T-T-TTTCAG---TGCGTA-TAAATAATAC--A-TG-ATACTATGTT--------CA--------ATACAGTTTT-ATTGGAGACAGCAAT---AT--ATTT-TCTT-----A--AAAAAA---GAAA----------ACC-CAATAACAATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAACTGTGT-TT-ATGAACCCCTTA----TCTAATG--GTC---TTAA--TC-TGCCCACTGCC-ATTGCAGTATTCATTTGTGTACTTCCGAACATTGGCAGAGGTACAGTGGGAAAGCAACAGAATCAATACGGAATTACAAAAATGTAAGCAAAAGTTAAAAGCTTGGTCCGCTCATCTAAGAAATTCA--CATTTCAACAGAAGTTATTTATTTTTCT-TGCTTTTTTTTAAAAACAGTCACTAAGGGGTCTACAGAA-----ATGGTTTTGGCAA-ATTATAAATACA-TTTAATTACAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCAGAAGTTTAATGAGGATTTtattaat
gi|5 : taAAGGCTCATTAAACTTCCGAAACGATCGTGTTTAGTTTTAATTTAAGTC----------AGTTTTGCTC-TTCC---AGATGATAGAATACATGTTTATTTAAT---------CACTGACAGAC-TTCGCAAACGAAAA-------TAAAAATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGAGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGCTTCGAAG-CCTGTTTGGAAACA--CGTTGGTCGGTAA-TTT-ATGATC--AATTCACTTC-AG-AA---AG-AAAAATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A-----------------------------T------------------T--------------------------------------------------------------------TTTT--------T-------------TTTATTCCC------------------CTCGGTGTATTCATGAACTGGAACC-CACGAGC-----------ACGTA-AGC---GACGAATCGTTC----ATATAACATCAAAAATGAAATTAATTTGT---G-ATTAACTGTACTTAAC--A------AGCT-ACCC-TTG----------ATAGCC--------TCTCAATACTGACTGCGATAAAGTGATC------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAA--GAAGGACCCTGAGCAAGAGTTGCTAGACAAAACTAG-----TATTCCGTATTCATGG--TAT-TT-CAG---TGCGTA-TATATAATAA--AATGCGTTCTACATT--------CG--------ATACAGTTTT-ATTGCAGTCATCAAT---ATATATAT-ATTT-----A--AAAAAAAAAGAAA----------ACC-CAAGAATAATA--CATAA-TATTAATGAAGCCATAACTTTTCTAATCTTTTCTA-ATGGACCCCTTA----TCTAACG--GTC---TTAA--TC-CACACACTACC-ACTGCAGTATTCATTTGTGTACTTTCGAACACTGGTGGAGGTACAATCGGAAAGCAACTGAGTCACTATGGAATTACAAAAACGTAAACAAAAGTTAAGAGTTCGGTCCGCTCGTCTAAGAAAGACA--CATTTCGATCGAAATTATTAA-TTTTCA-CGC--TTTTTCAAAAACAGTCGCTAAGGTGTATACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTCAATTGCAATCATTTTTGTTATT-ATC--AAAGTGTGCGTTTCGGAAGTTTTATGAGGCTTTaa
gi|6 : taCCCAGTAAACTTCCGAAACGGTCGTTTTTAGTTT--------ATC----------AGTTTTTCTC-TTCC---AGATGATAGAATACATGTTTGTTTGAT---------CACTGAGAAAC-TTTGCAATCGAAAA-A----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTAAC-AAAT----------TAATGTTTTTCTTTTTCCGATAAACACCTTC-GGCATAAAACGGGAAGTTACGAAG-CTTGTTCGGA----------------------T-ATGATT--AATTCGCTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCAGTT-------GA-A---------AA------------------T------------------T------------------AA------------------ATAACCGCTTGCGGTTAGATAG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGGACC-CACGAGCTAATTTGTTGCACAAA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT-----AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAGCC--------TCTCAATATTGACTAAGATAAAGTGATA------T-----GTGACGTAATAGCGCG-TATGATAGTAT-----CACGCGTATATATAAA--GGATGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TACTCCGTACTCATT--------T-CAG---TGCTTA-TACATAATAT--AATGCGTACTTCGTT--------CG--------ATACATTTTTTATTGCAGACATCAAT---AT-T-T-T-TTTT-----AAGAAGAAA---GAAA----------ACC-CAAAAACGATA--CATAA-TATCAGTGAAGCCATAACTTTTCGAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCGGTATTCATTTGTGTACTTCCGAACACTAGCGGAGGTACATTCGGAAAGCAACCGGGTCATTATGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAATACA--CATTTaac
gi|7 : GGCTCATTAAACATCCGAACCAGTTGTTTTAAGTTATAATTTAAGTCTTTATTTTCAAGGTTTGTTC-TTCC---AGAGAATAGATTATATGTTTATTTGAT---------CACTGAGAAAG-TTTGCAAATGAAAATA----ATAAATATA--ATGTACCAGCA-C--GTTATT-CTAAATAATTATG----AACGGGT-TT---GGTTTGC-AAGT----------TAATGGTCGTCTCTTTCCAATAAACGC------ACAGAAAATGGCGAGTCATGAAG-CTTTTTCCGAATAG--CGCCGGTTGCTAA-TGT-ATACAC--AATTCATTAC-AATAG---GG----CACCGCATGGG-------------GGATTGTAGGGGATGTGTTT-------AG-A---------AA------------------TTATCAAGCTGCTAGTGGCT------------------AG------------------AT------------------AG--------TAAT--------TA-AACACATCTCTTTTATTCTT------------------AACAGTGTTTTAATAAACTTGTACT-CACAAGCTAATATATTAT------AGT---GACGAATCGTTC----ATATAAAAATAAAAATAAAATTA--TTTT---T-AGTAACTGTAGCAAGA--ACTTTCTAACTAACTCATTGACTGTAATAAGTAGCTTGATAGCGTCTCAATATTGACTGCAAGAAAGTGATT------T-----GTTACATATTAGCACA-TACAAGATTATAAATACATTTGTATATATAAGATGGCGGTTCCTGAGCAAATGTTACCTGATCAAACTAGCACAATATT-GGTACTCATTG--TAT-TT-CAGACTTG-GAA-TAAAAAATGT---ATGCCGCCTACGCTAGTGAAAACA--------ATATATTTTT-AT--CAGATATCAAT---AT-T-CAT-TTTTTCAACA--AAAAAA---AAAATTATTTTTTCACT-CACTAACGATAATTATAATTTTTTCTCCAGCCATAATTTTACTTCTCCATT-TA-ATGGACCCCTGA----TCCAAC----TC---TCAA--TC-AGCACAATACattg
gi|8 : atTCATTAAACTTCAAAAACGGTCGTTTTTAGTTTGAATTTGTTTC----------AGTTTTATTC-TTCC---AGATGATAGAATACATGTTTATT-GAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACAAATTTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTTTCTTTCCGATAA-CACCTTC-GGGAGAAAACGAGGAGTTACGAAG-CTT-TTCGGAAA-G--CGTCGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AT-TC---GG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AAGTTACCGCTTGCGATGATAT------------------AG--------TTTT--------TA-AGAACATCTCCTTTATTCTT------------------CTCAGTGAATTAATGAAC------C-CACGAGCTAATTTACTGCACGTA-AGC---GACGAATCGTTC----ATATTAGATTAAAAATAACATTATTTTCT---T-AATAACTGTTCCAAAT--A------AACC-ACCC-TTG----------GTAGCC--------TGTCAGTATTGACTGTGATCAAGTTATT------T-----TAGACGTAATAGTGCG-TGCGATAGTAT-----CACGCGTATAAGCAAG--GGAGGATCCTGAGTAAGTGTTACTAGACCAAACTAG-----TATTCCGTACTCATTGTTT-T-TT-CAG---TGCGTA-TATATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCA---------ATAC-ATTT-----A--AA--------AAA----------ATC-CAATAACGATA--CATAA-TATCAGTGAAGTCATAAC-TTTCCAACCCC-T-TACATG-------TA----TCTAACGGTGTCACGTTAGATTCACGCGCACTACatgcttttcactta
gi|9 : AAGGGACATTAAACATCCCAAACAGTCCCTTTT--TTATCATTTAAGTC----------AGTTTTACTCCTTCCTTCAGATGACAGATTACAT-TTTATTTGAC---------CACTGAGAAAG-TATGCAAAAGGAAA-A----ATAATTATA--A------CATA-C--ATTACT--TTTATAATTGTG----AACGAGTGTT---TGTTAAA-ATAT----------TAATGGTCATCTCTTTCTGATA---------------AAAACGGGGAGTCACAAAG-CATATTGGGAATCG--CGTC-ACCAGTAA-TTT-AAGTTTTAAAGT-ATTT---G-TC---AA-TAACACAGTATGGGA------------GGAATGTAGGGGATGT-GTT-------AAGA---------GA------------------T------------------TATCAAGCCAGTTGTGGTGAA------------------GC------------------AG--------TTTT--------TA-AACACATCCCCTACATTCTC------------------CTCAGTGTATTATTGAGCTTGAACC-CTCAAGCTGAATTATTGCATGGA-AGC---AATCAATCACTCATGAATATAAAAAT-AAAATAAAA-------TT---T-AACAGCTGCACTTAACAAA------AATC--CCC-TAG----------GTAGCC--------TCTCAATACTGACAGCGAGGACGTGATCAGAGCATACTAGGTAACATAATAATGCA-TGCAACAGAAT-----CAggaaagtccacgctatatg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAAGTAATTTGTGGTACTAGAGAGTAGATGAATAAAATTAGGTTTCAGACTTATTAGTAAGTTTAAAAAAAAAGTTGAACCCTCCCCCCACTTTTATATGCTTAATGAAGAAACGAAAATTTTAATAAAAAATCATGATTCTATATTACTCTTGTTATTATATTATGACAAAACACCATCTTTTATGGTTTAGTATACTTGAATTATTAAGAAATTATGTAAAATTGTACCGAAATGACAATACATTTTTTTTCAAAGAATGTTTAATTTCTATTATGTCCAAAGAATACTGAATGCACGT
Unaligned ( gi|19 ): ACCCACCGACCCTTTTTTTTCCCTGACAAATCCCACTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCATCACTTTCATATTCATATTCATTCAGAAAACTAATTTGTGGTATTAGAGTAGTTGTTGGGATGAATAAAATTAG
Unaligned ( gi|21 ): TTTTTGGACAAAATCACACTTACATGCTACTTTCACCACTTTCATATTCTTTCAGAAAACTTATTTGTGGTATTAGAGTAGTATTGTTGTTGTGATGGATAAAATTAGGATTCAGACTTATTAGGAAGTTATTTGAAACGCTAGGTTTTA
Unaligned ( gi|22 ): CGACCCTGTATTTTTTTTGACAAAATCACAACTTAAATGGTTGAAATTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTTGTATAAGAGTAGTTGTTGTGATGAATAAAATTA
Unaligned ( gi|23 ): TACCCACTGACCCTGTTTTTTTGTTGATAAAATCACACTTACATGGTTGGATTTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACAAACTTATTTGTGGTATTAGAA
Unaligned ( gi|29 ): CTAGTCTTATTGATGGGCCTCTGACCCAACGATCTTAGCCCGTTTTTCGTTT
Unaligned ( gi|30 ): CGTAACTAACCTTAACTCAACGGCCTAAATACGTAACTAACAT
Unaligned ( gi|31 ): TTATCTTGGTATAATCTGGATATCATCATTATTAGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 111111 111111 1111111111 2222222222222 1111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 11111111 222222222222222222 111111111 1111111111 11111111 111111111111 11111 1111 222222222222222222 11111111 11111 1111111111 11 11111
lowQualScore : 7777777777 4 777 666666666 3 4 333333 55 000000 3 55 6 0 7777 7 666 3 5555555555 3 3 3 1 3 44444 2 0 3 3 3 0 44 3 3 6666 44 1111111111111 0 0 0000000 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222 22222222 3 444444444444444444 1 3 9999999 3 666 7777 2 2 99999 333333333 3 3 5555555555 33333333 999999999999 3 1 99999 55 11111 0000 4 8 777 4 4 55 2 000000000000000000 4 0 777 11111111 55555 66 3 777 9999999999 4 66 4 0 3 4 4 1 9999 66 777 66 4 5 1 1 77 5 5 33 66 0 44444 4 2 4 4 2
lowQualScore : .......... . ... ......... . . ...... .. ...... . .. . . .... . ... . .......... . . . . . ..... . . . . . . .. . . .... .. ............. . . ....... . ........................................................................................................... ........ ........ . .................. . . ....... . ... .... . . ..... ......... . . .......... ........ ............ . . ..... .. ..... .... . . ... . . .. . .................. . . ... ........ ..... .. . ... .......... . .. . . . . . . .... .. ... .. . . . . .. . . .. .. . ..... . . . . .
lowQualScore : 5555555555 0 000 000000000 9 0 999999 00 555555 6 00 5 1 7777 3 444 6 9999999999 3 2 1 0 8 44444 1 2 1 2 1 4 66 3 3 8888 99 7777777777777 1 2 0000000 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111 11111111 3 666666666666666666 4 6 6666666 6 444 7777 1 8 88888 777777777 6 6 9999999999 22222222 666666666666 6 4 11111 55 11111 9999 0 0 000 0 9 55 5 333333333333333333 4 8 888 00000000 66666 11 4 888 4444444444 4 11 4 9 9 4 4 4 4444 11 888 11 4 7 0 0 99 7 7 66 77 7 33333 4 6 4 6 9
consensus : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-NTTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
Reference ( family-17 ) : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-NTTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|1 : AAGGCTCATTAAACTTCCG---------TTTTTAGTTTTAATTTAAGTC----------AGATTTATTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------TACTGAGAGAT-TGTGCAAACGAAAA-A----ATAAATATA--A------AGCA-A--ATTATTAGTACATAATTAAG----AACAGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTCTCTTTCCGATAAACACTTTC-GGCAAAAAAGGGGGAGTTACTAAG-CTTGTGAGGAAACG--CGTCGGTCGGTAA-----------------CACTTC-AG-AC---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTTTATATTGAA-T---------AACTGCTTGCTG--------T------------------T------------------CG------------------AT------------------AG--------TTTT--------TA--GAACATCCCCTTTATTCCC------------------TTCAGT-----AATGAACTTGAGCC-CACAAGCCAATTTATTGCACGTA-AGA---GACGAATCATTT----ATATAAGATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------ACCC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAGTAGCGTG-TGCGATAGTAT-----CACGCATATATGCAAG--GGAGGATCCTGAACAAGAGTAATTAGACCAAACTAG-----TATTCCGTACTCATTG--T-TGTT-CAG---TGCGTA-TAAATAATAT--AATGAGTACTATATC--------CG--------ATACAGTTTT-ATTGCAAACATCAGTTTAAT-AATA--ATAA-----A--AAAAAA---GAAA----------ACC-CAATAAAGATA--CATAA-TATTAATGAAGCCATAACTTTTCTAAT
gi|10 : ttttttgacaaaatcacacttacatggttgaatttttagaaacaaaataaattagaatgctactttcaccactttcatattcattcagaaaacttatttttggtataagagtagttgttgtggcgaataaaattaggattcagacttataaggaagttattaggaatgctaggttttaacactaacttttatatgctttaatgaagaatcgaaaatttttaataaaaaaaaatataatttctatttattgctcttgttattaattaatattcctatatattatgacaaacaccatattttttggtttaatatactttaattattaTGAACACCTTT-AGCATAAAACTGGGAGTCGCGAAA-CCTGATTGGAATCA--CGTTGGTCGGTAATTTT-ATGCTC--ATTTAATTTCAAG-AATGTAG-TAACACAGCATGGG-------------GGATTGTTGGTGATGTGTTT-------AG-A---------AATTGATAAGACATTCGTGGT------------------T------------------AA------------------AT------------------AG--------TTTC--------------ACACCCCTTTTATTCTC------------------CGCAGTGTAT-----------------ACAAGCT-ATT--TTGCA--TAGAGCGGTGATGAATCATTC----ATATGAAAATAATAATAAAA--------------AAAAAATGTATTAAACA-A------AAAA-AACT-TTG----------TTAGCC--------TCTCAATATTGACTGTGAGAAAGTGATT------TATTC-ATTATGAAATATCACACT----TAATAT-----CA----TCTATGAGAT--GACAGATTCTGAGCGAAA
gi|12 : tgattaaaatcataatttttagctcaccATGCGGTT-------AA-A----------------------------------------------------------------------------------------T------------------AG--------TTTT--------TTTAGAACACACCCTTTATTCCCCCCCCCCCCACCCCCCCCCTTACTTAATTAATGAACTGGAACC-CACGAGCTAATTAATTGCACGTA-AGC---GACGAATCGTTC----ATATACAATCCAAAATAAAATTACTTTTTTTAT-AATAACTGTACTTAACA-A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGAGATT------C-----GTGA---------------CGATAGTAT-----CATGCGTATAGTTAAA--GGAGGATCCTGAGGAAGAACAACAAGACCAAACTTG-----TATTCCGTACTCTTTGC-T-T-TT-CAG---TACGCATTATATAAT-T--AATACGCACTtgaccacatgttatgaaaagataaaactttttttcattcaaacatgtttttaaatgcgccaaatatcac
gi|13 : AATTTTGT-TA-ATGAACGCCTTA----TCTAACG--ATC---TTAA--TC-CGTACACTACC-ACTGCAGTATTCATTTGTATGCTATCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACTGAATAACATAAATGTAAACAAAAGTTAAAAGCACGGTCCGCTCGTCTAAGAAATACA--CATTTCGATCGAATTTATTTA-TTTTCT-CACA-TTTTTCAAAAACAGTCACAAAGGGGTCTACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTTTATTCCAATCATTTTTGTAATT-GTCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|14 : AAGGCTCATTCAACTTTTGAAACGTTCATTTTTTGTTACAGTCTACATC----------CATTTTACTC-TTCA---AGTTCATAGATTCCATGTTTATTTGAT---------GAATGAGA-ACATATGCAAATGAAAATATACCATAAATATACCA------TGCATC--AGTTTCAG----TAATTGTG----AATGGGTATT---TGTTTTT-GCAT----------CAATGGTCGCCTCTTTCCGATAACCACCTTC-AGAAGAAAAC-----------AAGCCTTGCTCAGAATCA--CATaa
gi|15 : tcctgaCTAAACAGAACGGTCATTTCGATTGGAGTTTTTTA-TTTTATACGT--TCTT--AAAAGCTGTCAATAAGGGTTTTATATGGTTGCTGTGGTTTTAGCAATACTACAAACACA-TTT-------ATAATTTTTGTTATT-ATTAACAGTTGTGTTTTTTGGAAGTTTAATtattcctttattt
gi|16 : acaagatgaatgtgaacagataaGTTTGGTCTGCTCGCCTAAGAAAAATA--TATTTTAATCGAAGTTATTTA-TTTTCT-GGC--GTTTTAAAAAACAGTCACTAATGGGTCTACAGGA-----ATGGTTTTAGCAATACTATCAACACA-TGTAATTACAATCATTTTTGTTATT-ATCAATTTGTGTGCATTTCGGAAGTTTAATGAGGCTTTtggacattttagag
gi|17 : GTCTATCGGCTA-TAT-ATGCTC--AATTCATTTC-AG-AT---AGCAAACATAGCATGGG-------------G--CTGTATGGGATGT-GTT-------GA-ATATGGGATGAA------------------T------------------T------------------AA------------------AT------------------AGCCGCTTGCTTTTGTCGCATGCA-AGAGCATCACTTTTATTGGC------------------CTCAaaga
gi|18 : cgcaaata--T-T-CT-CGG---TGCGTA-TA-ATAATATGCACTG---ATTACGTT--------TGTGAAAACCATACATTTTT-ATCGTAGGTAT-------AT-TG-AT-TTTT-----A--A-AAGT---GAAA----------ACTAAAAAAACGATG--CATAA-TGTT------GCC-T--CTTTACTTGTCTTCT-TA-ATGGACCTCTGA----TCCAATG--GTC---TTGG--TC-CACGTATCACCTACTaacagatctatactctgaataagaacattctcatgagc
gi|2 : gtatAAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGATGACAATGATCGCTGAGAGAC-TTTGCAACCAAAAA-G----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------CAATGTTCGTCTCTTTCCAATAAACACCTTC-GGCAGAAAAGGGGGAGTTATAAAG-CTTGTTTGGAAATG--CATCGGTCGGTAA-TAT-ATGATA--AATTTGCTTA-AA-AG---AA-AAACATATTATGGG-------------GAACTGTAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AATTAACCGCTTGCATTTAAAT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------CTCAGTGTACTAATGAACTGGAACT-CACGAGC-----------ACATA-AGT---GACCAATCATTC----ATATAAAATCAAAAATAAAATTTCTTTTT---TTAATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTA----------------ATATTGACTGCGATAAAGTGATT------T-----GTAACGTAATTGCGTG-TGCGAAAGTAT-----CACACGTATATGCAAG--GGAGGATCCTGTGCAAGAGTTACTAGACGATACTTG-----TATTCTGTACTCATTG--T-T-TTTCAG---TGTGTA-TAAATGATGC--AATACGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-ATTTT----A--AACAAA---GAAA----------ACC-CAATAACGAAA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACT--GTC---TTAA--TC-CGCACACTACC-GCTGCAGTATTCATTTGTGTACTTCCGAACACTGGTGGAGGGACAGCCGGAAAGCAACCGAtttc
gi|20 : atttaaaattatgattggaaagagagagtgagatagagagacttagcttgttgactagtaaggtggaagttaacctttaacgtttatgaaactaagtgcagaatacacatttattccagtttatatagccaatatagacaaagaaagtatcaccaaaatccatgcaacaggaaattcacctgagaaagtatagttaATA--A------AACA-CGGACTACT--TTCAAAATTAGGTTGGACCACGT-TTGTTTGTTTACCAAATGTGCACAGGCTAATTACCGTCACTTTCCGGTAAAGAACTTC-GACAGCATACGTGGAGCCACGAGG-CGCGTTTAGAATCA--GAACTTTCGATAA-TTT-ATAATa
gi|24 : aaAGTCATGACG-CATGTTAAGAATTGGACAACAATCA--AA-TTTCATGA---------ATTTC-A--AG---AG-TAACATGGTATGGGTGGGGAGGGAGGGGGGTTGTAGGGGATGTGTTT-------AG-A---------AA------------------T------------------
gi|25 : AATACTTTAA-CACA-TTTAATTTCAATCATTTTTGTTTTT-TTC------TGTACATTTC---CGTTTAATGAGGCTaatcaagccacttg
gi|26 : tTTAGCAATGTTACAAACATATTTTAATTTC---CATTTTTTTT--------AAAATTGCACCTTTCTGTAG-TTAATGGGGCTTTatatagcaaatta
gi|27 : TTATTT---TTTAT-TGC--TT-----AAAGCAGTCAATAAAGGGTCTATAGAA-----ATGATTTaacaa
gi|28 : ttttcttccTATTACAAACACA-TTTAATTTCAATCATTTTTGTTATTAACCAAAA
gi|3 : AAGGCTCATTAAACTTCCGAAACGGTCATTTTTAGTTTTAATTTAAGTG----------AGTTTAACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGACAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACTGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGACAAACACCTTC-GGCAGAAAATGGGGAATTACGAAG-CTTATTTGGAAACG--CATTGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AG-AG---AA-AAACATAGTATGGG-------------GAACTGAAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------TGCAGTGTATTAATGAACCGGAACC-CACGA-----------GCACCTA-AGC---GACGAATTGTTC----ATATAAAATC-AAAATAAAATTACTATTT---T-AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAACC--------TCTCAATATTGACTTCAATAAAGTGATT------T-----GTGACGTAATAGCGAG-TGAAA-AGTAT-----CACGTGTATATGAAAG--GCAGGTTCCTGAGCAAGAGTTACTTGACCAAACTAA-----TATTCCATACTCATTG--T-T-TC-CAG---TGCGTA-TAAATAATAT--AATACGTACTACCTT--------AG--------ATACAGTGTT-ATTGCTGACATCAAT---AT-TATATAATTT-----A--AACAAA---GAAA----------ATC-CAATAACGATA--CATAA-TATTAAAGAAGCTATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTAAAGGTCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAATATTTGTGTGTGTACTTCCGAAGACTGGCAGAGGGACAGTCGGAAAGCAACGGAGTCATTACCAAATTACAAAAATGTAAACAAAAGTTAAAAGTGCGGTCCGCTCGTCCAAGAAACACA--CATTTTGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTTAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTATAATCA----TAATATT-ATCAAAAAGTGTGCATTTCTGAAGTTTAATGAGGCTTTtttttgtttt
gi|32 : AACAGTGTGCATTTCGGAAGTTTAATGAGG
gi|4 : AAAGCTCATTAAACTTCCAAAATGGTCATTTTTAGTTTTAATTAAAGTC----------AGCTTTACGC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAAAC-TTTGCAAATGAAAA-A-----TAAATATA--A------AG--------------TCCATAATTAAA----AATGGAT-TT---TGTCTAC-AAAT----------TAATGTTCGACTCTTTCCAATAAACACCTTTAGGCAGAAAAAGGCGAGT----------TG--------CG--CGTCAGTCAATTA-TAT-ATGATC--AACTCACTTC-AG-AG---AG-A------------G-------------GAACTGTAGGGGATGCAGTT-------AA-A---------AA------------------T------------------T------------------AA------------------ATAACTGCTTGTGGTTAGATAG--------TTTT--------TA-AGAACTTCCACTTTATTCCC------------------CTCAGTTTATGAATGAACTGGAACTACACAAGCTAATTTATTGCACGTA-AGC---AACGAATCATTT----ATATATAATTAAAAATGAA-TTACTTTTT---T-AATAATTGTACTAAAT--A------AACC-ACCC-TTA----------GTAGCT--------TCTCCATACTGATTGTGATAAAGGGATT------T-----GGTAC-TAATAGGGCT-TGTGATAGTAT-----CACGTGTGTATGCAAG--GAAGGATCCTGAGCAAGAGTTACTAGACTAAACTAG-----TATTCCATACTCATTG--T-T-TTTCAG---TGCGTA-TAAATAATAC--A-TG-ATACTATGTT--------CA--------ATACAGTTTT-ATTGGAGACAGCAAT---AT--ATTT-TCTT-----A--AAAAAA---GAAA----------ACC-CAATAACAATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAACTGTGT-TT-ATGAACCCCTTA----TCTAATG--GTC---TTAA--TC-TGCCCACTGCC-ATTGCAGTATTCATTTGTGTACTTCCGAACATTGGCAGAGGTACAGTGGGAAAGCAACAGAATCAATACGGAATTACAAAAATGTAAGCAAAAGTTAAAAGCTTGGTCCGCTCATCTAAGAAATTCA--CATTTCAACAGAAGTTATTTATTTTTCT-TGCTTTTTTTTAAAAACAGTCACTAAGGGGTCTACAGAA-----ATGGTTTTGGCAA-ATTATAAATACA-TTTAATTACAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCAGAAGTTTAATGAGGATTTtattaat
gi|5 : taAAGGCTCATTAAACTTCCGAAACGATCGTGTTTAGTTTTAATTTAAGTC----------AGTTTTGCTC-TTCC---AGATGATAGAATACATGTTTATTTAAT---------CACTGACAGAC-TTCGCAAACGAAAA-------TAAAAATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGAGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGCTTCGAAG-CCTGTTTGGAAACA--CGTTGGTCGGTAA-TTT-ATGATC--AATTCACTTC-AG-AA---AG-AAAAATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A-----------------------------T------------------T--------------------------------------------------------------------TTTT--------T-------------TTTATTCCC------------------CTCGGTGTATTCATGAACTGGAACC-CACGAGC-----------ACGTA-AGC---GACGAATCGTTC----ATATAACATCAAAAATGAAATTAATTTGT---G-ATTAACTGTACTTAAC--A------AGCT-ACCC-TTG----------ATAGCC--------TCTCAATACTGACTGCGATAAAGTGATC------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAA--GAAGGACCCTGAGCAAGAGTTGCTAGACAAAACTAG-----TATTCCGTATTCATGG--TAT-TT-CAG---TGCGTA-TATATAATAA--AATGCGTTCTACATT--------CG--------ATACAGTTTT-ATTGCAGTCATCAAT---ATATATAT-ATTT-----A--AAAAAAAAAGAAA----------ACC-CAAGAATAATA--CATAA-TATTAATGAAGCCATAACTTTTCTAATCTTTTCTA-ATGGACCCCTTA----TCTAACG--GTC---TTAA--TC-CACACACTACC-ACTGCAGTATTCATTTGTGTACTTTCGAACACTGGTGGAGGTACAATCGGAAAGCAACTGAGTCACTATGGAATTACAAAAACGTAAACAAAAGTTAAGAGTTCGGTCCGCTCGTCTAAGAAAGACA--CATTTCGATCGAAATTATTAA-TTTTCA-CGC--TTTTTCAAAAACAGTCGCTAAGGTGTATACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTCAATTGCAATCATTTTTGTTATT-ATC--AAAGTGTGCGTTTCGGAAGTTTTATGAGGCTTTaa
gi|6 : taCCCAGTAAACTTCCGAAACGGTCGTTTTTAGTTT--------ATC----------AGTTTTTCTC-TTCC---AGATGATAGAATACATGTTTGTTTGAT---------CACTGAGAAAC-TTTGCAATCGAAAA-A----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTAAC-AAAT----------TAATGTTTTTCTTTTTCCGATAAACACCTTC-GGCATAAAACGGGAAGTTACGAAG-CTTGTTCGGA----------------------T-ATGATT--AATTCGCTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCAGTT-------GA-A---------AA------------------T------------------T------------------AA------------------ATAACCGCTTGCGGTTAGATAG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGGACC-CACGAGCTAATTTGTTGCACAAA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT-----AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAGCC--------TCTCAATATTGACTAAGATAAAGTGATA------T-----GTGACGTAATAGCGCG-TATGATAGTAT-----CACGCGTATATATAAA--GGATGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TACTCCGTACTCATT--------T-CAG---TGCTTA-TACATAATAT--AATGCGTACTTCGTT--------CG--------ATACATTTTTTATTGCAGACATCAAT---AT-T-T-T-TTTT-----AAGAAGAAA---GAAA----------ACC-CAAAAACGATA--CATAA-TATCAGTGAAGCCATAACTTTTCGAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCGGTATTCATTTGTGTACTTCCGAACACTAGCGGAGGTACATTCGGAAAGCAACCGGGTCATTATGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAATACA--CATTTaac
gi|7 : GGCTCATTAAACATCCGAACCAGTTGTTTTAAGTTATAATTTAAGTCTTTATTTTCAAGGTTTGTTC-TTCC---AGAGAATAGATTATATGTTTATTTGAT---------CACTGAGAAAG-TTTGCAAATGAAAATA----ATAAATATA--ATGTACCAGCA-C--GTTATT-CTAAATAATTATG----AACGGGT-TT---GGTTTGC-AAGT----------TAATGGTCGTCTCTTTCCAATAAACGC------ACAGAAAATGGCGAGTCATGAAG-CTTTTTCCGAATAG--CGCCGGTTGCTAA-TGT-ATACAC--AATTCATTAC-AATAG---GG----CACCGCATGGG-------------GGATTGTAGGGGATGTGTTT-------AG-A---------AA------------------TTATCAAGCTGCTAGTGGCT------------------AG------------------AT------------------AG--------TAAT--------TA-AACACATCTCTTTTATTCTT------------------AACAGTGTTTTAATAAACTTGTACT-CACAAGCTAATATATTAT------AGT---GACGAATCGTTC----ATATAAAAATAAAAATAAAATTA--TTTT---T-AGTAACTGTAGCAAGA--ACTTTCTAACTAACTCATTGACTGTAATAAGTAGCTTGATAGCGTCTCAATATTGACTGCAAGAAAGTGATT------T-----GTTACATATTAGCACA-TACAAGATTATAAATACATTTGTATATATAAGATGGCGGTTCCTGAGCAAATGTTACCTGATCAAACTAGCACAATATT-GGTACTCATTG--TAT-TT-CAGACTTG-GAA-TAAAAAATGT---ATGCCGCCTACGCTAGTGAAAACA--------ATATATTTTT-AT--CAGATATCAAT---AT-T-CAT-TTTTTCAACA--AAAAAA---AAAATTATTTTTTCACT-CACTAACGATAATTATAATTTTTTCTCCAGCCATAATTTTACTTCTCCATT-TA-ATGGACCCCTGA----TCCAAC----TC---TCAA--TC-AGCACAATACattg
gi|8 : atTCATTAAACTTCAAAAACGGTCGTTTTTAGTTTGAATTTGTTTC----------AGTTTTATTC-TTCC---AGATGATAGAATACATGTTTATT-GAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACAAATTTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTTTCTTTCCGATAA-CACCTTC-GGGAGAAAACGAGGAGTTACGAAG-CTT-TTCGGAAA-G--CGTCGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AT-TC---GG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AAGTTACCGCTTGCGATGATAT------------------AG--------TTTT--------TA-AGAACATCTCCTTTATTCTT------------------CTCAGTGAATTAATGAAC------C-CACGAGCTAATTTACTGCACGTA-AGC---GACGAATCGTTC----ATATTAGATTAAAAATAACATTATTTTCT---T-AATAACTGTTCCAAAT--A------AACC-ACCC-TTG----------GTAGCC--------TGTCAGTATTGACTGTGATCAAGTTATT------T-----TAGACGTAATAGTGCG-TGCGATAGTAT-----CACGCGTATAAGCAAG--GGAGGATCCTGAGTAAGTGTTACTAGACCAAACTAG-----TATTCCGTACTCATTGTTT-T-TT-CAG---TGCGTA-TATATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCA---------ATAC-ATTT-----A--AA--------AAA----------ATC-CAATAACGATA--CATAA-TATCAGTGAAGTCATAAC-TTTCCAACCCC-T-TACATG-------TA----TCTAACGGTGTCACGTTAGATTCACGCGCACTACatgcttttcactta
gi|9 : AAGGGACATTAAACATCCCAAACAGTCCCTTTT--TTATCATTTAAGTC----------AGTTTTACTCCTTCCTTCAGATGACAGATTACAT-TTTATTTGAC---------CACTGAGAAAG-TATGCAAAAGGAAA-A----ATAATTATA--A------CATA-C--ATTACT--TTTATAATTGTG----AACGAGTGTT---TGTTAAA-ATAT----------TAATGGTCATCTCTTTCTGATA---------------AAAACGGGGAGTCACAAAG-CATATTGGGAATCG--CGTC-ACCAGTAA-TTT-AAGTTTTAAAGT-ATTT---G-TC---AA-TAACACAGTATGGGA------------GGAATGTAGGGGATGT-GTT-------AAGA---------GA------------------T------------------TATCAAGCCAGTTGTGGTGAA------------------GC------------------AG--------TTTT--------TA-AACACATCCCCTACATTCTC------------------CTCAGTGTATTATTGAGCTTGAACC-CTCAAGCTGAATTATTGCATGGA-AGC---AATCAATCACTCATGAATATAAAAAT-AAAATAAAA-------TT---T-AACAGCTGCACTTAACAAA------AATC--CCC-TAG----------GTAGCC--------TCTCAATACTGACAGCGAGGACGTGATCAGAGCATACTAGGTAACATAATAATGCA-TGCAACAGAAT-----CAggaaagtccacgctatatg
blockSeqs : TTTATTTTCA C TTC GACAATGAT G A TATACC CC TGTACC T GG A TTGG A GTT C GTGCACAGGC A C C C T TTGGA G T T C TA A T ATGT CA TGGGGAGGGAGGG . G AATTGATAAGACATTCGTGGTTAAAT CCGCTTGC GTCGCATG T CCCCCCCCCACCCCCCCC G A TAATTAA G GGT ATGA A C TTAT ACTTTCT A A ACTGTAATAA TGATAGCG AGAGCATACTAG C T AAATA AT CACAA TTT . T ACT T T GC C TGTGAAAACC T . TATATAA TCAAC AG A AAA TTATTTTTTC A AT T C C C G AAGG GT ACG AT A T C A GT T A TT TA TTGCT T A A A G
blockSeqs : . . . . C . TA . . . . A . G . . . . T . T C TCA T . A . . . . T T A . . AATTAATTAACCGCTTGCATTTAAAT . . . . G . TAATTTA . . . C C TT AAA . . . . TATTC . T . . . CT . T . . A . C AGTGAAAACA . . ATATATA T . C . . . . . G . . A . . . . . . G A . . . . TT . . T . A G
blockSeqs : . . . . A . G . . . . A . . . . . . C . T T TCA G . A . . . . G A . . . AATTAAATAACTGCTTGTGGTTAGAT . . . . G . TAATTTG . . . A C T AA . . . . C . A . . . TA . . . . A . C CG . . TATATA . . C . . . . . G . . A . . . . . . A C . . . . TT . . T . A T
blockSeqs : . . . . G . A . . . . A . . . . . . C . G T ATG T . T . . . . G T . . . AATTAAATAACCGCTTGCGGTTAGAT . . . . G . TAATATA . . . A C T AA . . . . T . T . . . TA . . . . A . C AG . . TGATT . . A . . . . . G . . A . . . . . . T T . . . . TC . . T . A T
blockSeqs : . . . . A . A . . . . A . . . . . . T . A A TCA A . T . . . . G A . . . AATTATCAAGCTGCTAGTGGCTAGAT . . . . G . TAATTTA . . . A A G A . . . . T . T . . . T . . . . T . C CA . . ATTTT . . A . . . . . T . . G . . . . . . C G . . . . . . . A . A G
blockSeqs : . . . . A . A . . . . A . . . . . . T . T T ACG G . A . . . . G A . . . AATTAAGTTACCGCTTGCGATGATAT . . . . G . TGAATTA . . . A C T A . . . . T . T . . . T . . . . C . C CG . . TCATT . . G . . . . . G . . A . . . . . . T . . . . . . . A . . A
blockSeqs : . . . . G . A . . . . . . . . . . . T . C T ACA A . A . . . . A A . . . GATTATCAAGCCAGTTGTGGTGAAGC . . . . T . TATT . . . A T T A . . . . T . G . . . T . . . . A . C CG . . ATACA . . A . . . . . T . . G . . . . . . G . . G
blockSeqs : . . . . A . A . . . . . . . . . . . C . T C TAG G . T . . . . G A . . . TATGGGATGAATTAAAT . . . . T . . . . . A . T A . . . . T . T . . . T . . . . T . . CG . . TTTT . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . T C TCG G . G . . . . G A . . . AATTAAAT . . . . . . . . . . . . . A . . . . T . C . . . . . . . . . .
blockSeqs : . . . . . . . . . . . C . T C CG G . A . . . . C T . . . TT . . . . . . . . . . . . . A . . . . T . . .
blockSeqs : . . . A G AG . . T . . . . C . . . . T . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : ******* *** **
originalCons : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-NTTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
finalCons : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-NTTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAAGTAATTTGTGGTACTAGAGAGTAGATGAATAAAATTAGGTTTCAGACTTATTAGTAAGTTTAAAAAAAAAGTTGAACCCTCCCCCCACTTTTATATGCTTAATGAAGAAACGAAAATTTTAATAAAAAATCATGATTCTATATTACTCTTGTTATTATATTATGACAAAACACCATCTTTTATGGTTTAGTATACTTGAATTATTAAGAAATTATGTAAAATTGTACCGAAATGACAATACATTTTTTTTCAAAGAATGTTTAATTTCTATTATGTCCAAAGAATACTGAATGCACGT
Unaligned ( gi|19 ): ACCCACCGACCCTTTTTTTTCCCTGACAAATCCCACTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCATCACTTTCATATTCATATTCATTCAGAAAACTAATTTGTGGTATTAGAGTAGTTGTTGGGATGAATAAAATTAG
Unaligned ( gi|21 ): TTTTTGGACAAAATCACACTTACATGCTACTTTCACCACTTTCATATTCTTTCAGAAAACTTATTTGTGGTATTAGAGTAGTATTGTTGTTGTGATGGATAAAATTAGGATTCAGACTTATTAGGAAGTTATTTGAAACGCTAGGTTTTA
Unaligned ( gi|22 ): CGACCCTGTATTTTTTTTGACAAAATCACAACTTAAATGGTTGAAATTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTTGTATAAGAGTAGTTGTTGTGATGAATAAAATTA
Unaligned ( gi|23 ): TACCCACTGACCCTGTTTTTTTGTTGATAAAATCACACTTACATGGTTGGATTTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACAAACTTATTTGTGGTATTAGAA
Unaligned ( gi|29 ): CTAGTCTTATTGATGGGCCTCTGACCCAACGATCTTAGCCCGTTTTTCGTTT
Unaligned ( gi|30 ): CGTAACTAACCTTAACTCAACGGCCTAAATACGTAACTAACAT
Unaligned ( gi|31 ): TTATCTTGGTATAATCTGGATATCATCATTATTAGTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 111111111 111111 111111 1111111111 2222222222222 1111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111 11111111 222222222222222222 111111111 1111111111 11111111 111111111111 11111 1111 222222222222222222 11111111 11111 1111111111 11 11111
lowQualScore : 7777777777 4 777 666666666 3 4 333333 55 000000 3 55 6 0 7777 7 666 3 5555555555 3 3 3 1 3 44444 2 0 3 3 3 0 44 3 3 6666 44 1111111111111 0 0 0000000 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222 22222222 3 444444444444444444 1 3 9999999 3 666 7777 2 2 99999 333333333 3 3 5555555555 33333333 999999999999 3 1 99999 55 11111 0000 4 8 777 4 4 55 2 000000000000000000 4 0 777 11111111 55555 66 3 777 9999999999 4 66 4 0 3 4 4 1 9999 66 777 66 4 5 1 1 77 5 5 33 66 0 44444 4 2 4 4 2
lowQualScore : .......... . ... ......... . . ...... .. ...... . .. . . .... . ... . .......... . . . . . ..... . . . . . . .. . . .... .. ............. . . ....... . ........................................................................................................... ........ ........ . .................. . . ....... . ... .... . . ..... ......... . . .......... ........ ............ . . ..... .. ..... .... . . ... . . .. . .................. . . ... ........ ..... .. . ... .......... . .. . . . . . . .... .. ... .. . . . . .. . . .. .. . ..... . . . . .
lowQualScore : 5555555555 0 000 000000000 9 0 999999 00 555555 6 00 5 1 7777 3 444 6 9999999999 3 2 1 0 8 44444 1 2 1 2 1 4 66 3 3 8888 99 7777777777777 1 2 0000000 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111 11111111 3 666666666666666666 4 6 6666666 6 444 7777 1 8 88888 777777777 6 6 9999999999 22222222 666666666666 6 4 11111 55 11111 9999 0 0 000 0 9 55 5 333333333333333333 4 8 888 00000000 66666 11 4 888 4444444444 4 11 4 9 9 4 4 4 4444 11 888 11 4 7 0 0 99 7 7 66 77 7 33333 4 6 4 6 9
consensus : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-NTTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
Reference ( family-17 ) : AAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGTCACGAAG-CTTGTTCGGAANCG--CGTCGGTCGGTAA-TNT-ATGATC--AATTCACTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGAACC-CACGAGCTAATTTATTGCACGTA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAG--GGAGGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TATTCCGTACTCATTG--T-T-TT-CAG---TGCGTA-TANATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-NTTT-----A--AAAAAA---GAAA----------ACC-CAATAACGATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAGTATTCATTTGTGTACTTCCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAANACA--CATTTCGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTCAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTNCAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|1 : AAGGCTCATTAAACTTCCG---------TTTTTAGTTTTAATTTAAGTC----------AGATTTATTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------TACTGAGAGAT-TGTGCAAACGAAAA-A----ATAAATATA--A------AGCA-A--ATTATTAGTACATAATTAAG----AACAGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTCTCTTTCCGATAAACACTTTC-GGCAAAAAAGGGGGAGTTACTAAG-CTTGTGAGGAAACG--CGTCGGTCGGTAA-----------------CACTTC-AG-AC---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTTTATATTGAA-T---------AACTGCTTGCTG--------T------------------T------------------CG------------------AT------------------AG--------TTTT--------TA--GAACATCCCCTTTATTCCC------------------TTCAGT-----AATGAACTTGAGCC-CACAAGCCAATTTATTGCACGTA-AGA---GACGAATCATTT----ATATAAGATTAAAAATAAAATTACTTTTT---T-AATAACTGTACTAAAC--A------ACCC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGTGATT------T-----GTGACGTAGTAGCGTG-TGCGATAGTAT-----CACGCATATATGCAAG--GGAGGATCCTGAACAAGAGTAATTAGACCAAACTAG-----TATTCCGTACTCATTG--T-TGTT-CAG---TGCGTA-TAAATAATAT--AATGAGTACTATATC--------CG--------ATACAGTTTT-ATTGCAAACATCAGTTTAAT-AATA--ATAA-----A--AAAAAA---GAAA----------ACC-CAATAAAGATA--CATAA-TATTAATGAAGCCATAACTTTTCTAAT
gi|10 : ttttttgacaaaatcacacttacatggttgaatttttagaaacaaaataaattagaatgctactttcaccactttcatattcattcagaaaacttatttttggtataagagtagttgttgtggcgaataaaattaggattcagacttataaggaagttattaggaatgctaggttttaacactaacttttatatgctttaatgaagaatcgaaaatttttaataaaaaaaaatataatttctatttattgctcttgttattaattaatattcctatatattatgacaaacaccatattttttggtttaatatactttaattattaTGAACACCTTT-AGCATAAAACTGGGAGTCGCGAAA-CCTGATTGGAATCA--CGTTGGTCGGTAATTTT-ATGCTC--ATTTAATTTCAAG-AATGTAG-TAACACAGCATGGG-------------GGATTGTTGGTGATGTGTTT-------AG-A---------AATTGATAAGACATTCGTGGT------------------T------------------AA------------------AT------------------AG--------TTTC--------------ACACCCCTTTTATTCTC------------------CGCAGTGTAT-----------------ACAAGCT-ATT--TTGCA--TAGAGCGGTGATGAATCATTC----ATATGAAAATAATAATAAAA--------------AAAAAATGTATTAAACA-A------AAAA-AACT-TTG----------TTAGCC--------TCTCAATATTGACTGTGAGAAAGTGATT------TATTC-ATTATGAAATATCACACT----TAATAT-----CA----TCTATGAGAT--GACAGATTCTGAGCGAAA
gi|12 : tgattaaaatcataatttttagctcaccATGCGGTT-------AA-A----------------------------------------------------------------------------------------T------------------AG--------TTTT--------TTTAGAACACACCCTTTATTCCCCCCCCCCCCACCCCCCCCCTTACTTAATTAATGAACTGGAACC-CACGAGCTAATTAATTGCACGTA-AGC---GACGAATCGTTC----ATATACAATCCAAAATAAAATTACTTTTTTTAT-AATAACTGTACTTAACA-A------AACC-ACCC-TTG----------GTAGCC--------TCTCAATATTGACTGCGATAAAGAGATT------C-----GTGA---------------CGATAGTAT-----CATGCGTATAGTTAAA--GGAGGATCCTGAGGAAGAACAACAAGACCAAACTTG-----TATTCCGTACTCTTTGC-T-T-TT-CAG---TACGCATTATATAAT-T--AATACGCACTtgaccacatgttatgaaaagataaaactttttttcattcaaacatgtttttaaatgcgccaaatatcac
gi|13 : AATTTTGT-TA-ATGAACGCCTTA----TCTAACG--ATC---TTAA--TC-CGTACACTACC-ACTGCAGTATTCATTTGTATGCTATCGAACACTGGCGGAGGTACAGTCGGAAAGCAACCGAGTCATTACTGAATAACATAAATGTAAACAAAAGTTAAAAGCACGGTCCGCTCGTCTAAGAAATACA--CATTTCGATCGAATTTATTTA-TTTTCT-CACA-TTTTTCAAAAACAGTCACAAAGGGGTCTACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTTTATTCCAATCATTTTTGTAATT-GTCAAAAAGTGTGCATTTCGGAAGTTTAATGAGGCTTT
gi|14 : AAGGCTCATTCAACTTTTGAAACGTTCATTTTTTGTTACAGTCTACATC----------CATTTTACTC-TTCA---AGTTCATAGATTCCATGTTTATTTGAT---------GAATGAGA-ACATATGCAAATGAAAATATACCATAAATATACCA------TGCATC--AGTTTCAG----TAATTGTG----AATGGGTATT---TGTTTTT-GCAT----------CAATGGTCGCCTCTTTCCGATAACCACCTTC-AGAAGAAAAC-----------AAGCCTTGCTCAGAATCA--CATaa
gi|15 : tcctgaCTAAACAGAACGGTCATTTCGATTGGAGTTTTTTA-TTTTATACGT--TCTT--AAAAGCTGTCAATAAGGGTTTTATATGGTTGCTGTGGTTTTAGCAATACTACAAACACA-TTT-------ATAATTTTTGTTATT-ATTAACAGTTGTGTTTTTTGGAAGTTTAATtattcctttattt
gi|16 : acaagatgaatgtgaacagataaGTTTGGTCTGCTCGCCTAAGAAAAATA--TATTTTAATCGAAGTTATTTA-TTTTCT-GGC--GTTTTAAAAAACAGTCACTAATGGGTCTACAGGA-----ATGGTTTTAGCAATACTATCAACACA-TGTAATTACAATCATTTTTGTTATT-ATCAATTTGTGTGCATTTCGGAAGTTTAATGAGGCTTTtggacattttagag
gi|17 : GTCTATCGGCTA-TAT-ATGCTC--AATTCATTTC-AG-AT---AGCAAACATAGCATGGG-------------G--CTGTATGGGATGT-GTT-------GA-ATATGGGATGAA------------------T------------------T------------------AA------------------AT------------------AGCCGCTTGCTTTTGTCGCATGCA-AGAGCATCACTTTTATTGGC------------------CTCAaaga
gi|18 : cgcaaata--T-T-CT-CGG---TGCGTA-TA-ATAATATGCACTG---ATTACGTT--------TGTGAAAACCATACATTTTT-ATCGTAGGTAT-------AT-TG-AT-TTTT-----A--A-AAGT---GAAA----------ACTAAAAAAACGATG--CATAA-TGTT------GCC-T--CTTTACTTGTCTTCT-TA-ATGGACCTCTGA----TCCAATG--GTC---TTGG--TC-CACGTATCACCTACTaacagatctatactctgaataagaacattctcatgagc
gi|2 : gtatAAGGCTCATTAAACTTCCGAAACGGTCGTTTTTAGTTTTAATTTAAGTC----------AGTTTTACTC-TTCC---AGATGATAGAATACATGTTTATTTGATGACAATGATCGCTGAGAGAC-TTTGCAACCAAAAA-G----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTTAC-AAAT----------CAATGTTCGTCTCTTTCCAATAAACACCTTC-GGCAGAAAAGGGGGAGTTATAAAG-CTTGTTTGGAAATG--CATCGGTCGGTAA-TAT-ATGATA--AATTTGCTTA-AA-AG---AA-AAACATATTATGGG-------------GAACTGTAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AATTAACCGCTTGCATTTAAAT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------CTCAGTGTACTAATGAACTGGAACT-CACGAGC-----------ACATA-AGT---GACCAATCATTC----ATATAAAATCAAAAATAAAATTTCTTTTT---TTAATAACTGTACTAAAC--A------AACC-ACCC-TTG----------GTA----------------ATATTGACTGCGATAAAGTGATT------T-----GTAACGTAATTGCGTG-TGCGAAAGTAT-----CACACGTATATGCAAG--GGAGGATCCTGTGCAAGAGTTACTAGACGATACTTG-----TATTCTGTACTCATTG--T-T-TTTCAG---TGTGTA-TAAATGATGC--AATACGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCAAT---AT-TATAT-ATTTT----A--AACAAA---GAAA----------ACC-CAATAACGAAA--CATAA-TATTAGTGAAGCCATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTA----TCTAACT--GTC---TTAA--TC-CGCACACTACC-GCTGCAGTATTCATTTGTGTACTTCCGAACACTGGTGGAGGGACAGCCGGAAAGCAACCGAtttc
gi|20 : atttaaaattatgattggaaagagagagtgagatagagagacttagcttgttgactagtaaggtggaagttaacctttaacgtttatgaaactaagtgcagaatacacatttattccagtttatatagccaatatagacaaagaaagtatcaccaaaatccatgcaacaggaaattcacctgagaaagtatagttaATA--A------AACA-CGGACTACT--TTCAAAATTAGGTTGGACCACGT-TTGTTTGTTTACCAAATGTGCACAGGCTAATTACCGTCACTTTCCGGTAAAGAACTTC-GACAGCATACGTGGAGCCACGAGG-CGCGTTTAGAATCA--GAACTTTCGATAA-TTT-ATAATa
gi|24 : aaAGTCATGACG-CATGTTAAGAATTGGACAACAATCA--AA-TTTCATGA---------ATTTC-A--AG---AG-TAACATGGTATGGGTGGGGAGGGAGGGGGGTTGTAGGGGATGTGTTT-------AG-A---------AA------------------T------------------
gi|25 : AATACTTTAA-CACA-TTTAATTTCAATCATTTTTGTTTTT-TTC------TGTACATTTC---CGTTTAATGAGGCTaatcaagccacttg
gi|26 : tTTAGCAATGTTACAAACATATTTTAATTTC---CATTTTTTTT--------AAAATTGCACCTTTCTGTAG-TTAATGGGGCTTTatatagcaaatta
gi|27 : TTATTT---TTTAT-TGC--TT-----AAAGCAGTCAATAAAGGGTCTATAGAA-----ATGATTTaacaa
gi|28 : ttttcttccTATTACAAACACA-TTTAATTTCAATCATTTTTGTTATTAACCAAAA
gi|3 : AAGGCTCATTAAACTTCCGAAACGGTCATTTTTAGTTTTAATTTAAGTG----------AGTTTAACTC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGACAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACTGGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGACAAACACCTTC-GGCAGAAAATGGGGAATTACGAAG-CTTATTTGGAAACG--CATTGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AG-AG---AA-AAACATAGTATGGG-------------GAACTGAAGGGGATGTGGTT-------AA-A---------AA------------------T------------------T------------------AA------------------AT------------------AG--------TTTT--------TA-AGAACGTCCCCTTTATTCCC------------------TGCAGTGTATTAATGAACCGGAACC-CACGA-----------GCACCTA-AGC---GACGAATTGTTC----ATATAAAATC-AAAATAAAATTACTATTT---T-AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAACC--------TCTCAATATTGACTTCAATAAAGTGATT------T-----GTGACGTAATAGCGAG-TGAAA-AGTAT-----CACGTGTATATGAAAG--GCAGGTTCCTGAGCAAGAGTTACTTGACCAAACTAA-----TATTCCATACTCATTG--T-T-TC-CAG---TGCGTA-TAAATAATAT--AATACGTACTACCTT--------AG--------ATACAGTGTT-ATTGCTGACATCAAT---AT-TATATAATTT-----A--AACAAA---GAAA----------ATC-CAATAACGATA--CATAA-TATTAAAGAAGCTATAACTTTTCTAATCTTGT-TA-ATGAACCCCTTAAAGGTCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCAATATTTGTGTGTGTACTTCCGAAGACTGGCAGAGGGACAGTCGGAAAGCAACGGAGTCATTACCAAATTACAAAAATGTAAACAAAAGTTAAAAGTGCGGTCCGCTCGTCCAAGAAACACA--CATTTTGATCGAAGTTATTTA-TTTTCT-CGC--TTTTTTAAAAACAGTCACTAAGGGGTCTACAGGA-----ATGGTTTTAGCAATACTATAAACACA-TTTAATTATAATCA----TAATATT-ATCAAAAAGTGTGCATTTCTGAAGTTTAATGAGGCTTTtttttgtttt
gi|32 : AACAGTGTGCATTTCGGAAGTTTAATGAGG
gi|4 : AAAGCTCATTAAACTTCCAAAATGGTCATTTTTAGTTTTAATTAAAGTC----------AGCTTTACGC-TTCC---AGATGATAGAATACATGTTTATTTGAT---------CACTGAGAAAC-TTTGCAAATGAAAA-A-----TAAATATA--A------AG--------------TCCATAATTAAA----AATGGAT-TT---TGTCTAC-AAAT----------TAATGTTCGACTCTTTCCAATAAACACCTTTAGGCAGAAAAAGGCGAGT----------TG--------CG--CGTCAGTCAATTA-TAT-ATGATC--AACTCACTTC-AG-AG---AG-A------------G-------------GAACTGTAGGGGATGCAGTT-------AA-A---------AA------------------T------------------T------------------AA------------------ATAACTGCTTGTGGTTAGATAG--------TTTT--------TA-AGAACTTCCACTTTATTCCC------------------CTCAGTTTATGAATGAACTGGAACTACACAAGCTAATTTATTGCACGTA-AGC---AACGAATCATTT----ATATATAATTAAAAATGAA-TTACTTTTT---T-AATAATTGTACTAAAT--A------AACC-ACCC-TTA----------GTAGCT--------TCTCCATACTGATTGTGATAAAGGGATT------T-----GGTAC-TAATAGGGCT-TGTGATAGTAT-----CACGTGTGTATGCAAG--GAAGGATCCTGAGCAAGAGTTACTAGACTAAACTAG-----TATTCCATACTCATTG--T-T-TTTCAG---TGCGTA-TAAATAATAC--A-TG-ATACTATGTT--------CA--------ATACAGTTTT-ATTGGAGACAGCAAT---AT--ATTT-TCTT-----A--AAAAAA---GAAA----------ACC-CAATAACAATA--CATAA-TATTAGTGAAGCCATAACTTTTCTAACTGTGT-TT-ATGAACCCCTTA----TCTAATG--GTC---TTAA--TC-TGCCCACTGCC-ATTGCAGTATTCATTTGTGTACTTCCGAACATTGGCAGAGGTACAGTGGGAAAGCAACAGAATCAATACGGAATTACAAAAATGTAAGCAAAAGTTAAAAGCTTGGTCCGCTCATCTAAGAAATTCA--CATTTCAACAGAAGTTATTTATTTTTCT-TGCTTTTTTTTAAAAACAGTCACTAAGGGGTCTACAGAA-----ATGGTTTTGGCAA-ATTATAAATACA-TTTAATTACAATCATTTTTGTTATT-ATCAAAAAGTGTGCATTTCAGAAGTTTAATGAGGATTTtattaat
gi|5 : taAAGGCTCATTAAACTTCCGAAACGATCGTGTTTAGTTTTAATTTAAGTC----------AGTTTTGCTC-TTCC---AGATGATAGAATACATGTTTATTTAAT---------CACTGACAGAC-TTCGCAAACGAAAA-------TAAAAATA--A------AGCA-C--ATTATTAGTACATAATTAAG----AACGAGT-TT---TGTTTAC-AAAT----------TAATGTTCGTCTCTTTCCGATAAACACCTTC-GGCAGAAAACGGGGAGCTTCGAAG-CCTGTTTGGAAACA--CGTTGGTCGGTAA-TTT-ATGATC--AATTCACTTC-AG-AA---AG-AAAAATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A-----------------------------T------------------T--------------------------------------------------------------------TTTT--------T-------------TTTATTCCC------------------CTCGGTGTATTCATGAACTGGAACC-CACGAGC-----------ACGTA-AGC---GACGAATCGTTC----ATATAACATCAAAAATGAAATTAATTTGT---G-ATTAACTGTACTTAAC--A------AGCT-ACCC-TTG----------ATAGCC--------TCTCAATACTGACTGCGATAAAGTGATC------T-----GTGACGTAATAGCGCG-TGCGATAGTAT-----CACGCGTATATGCAAA--GAAGGACCCTGAGCAAGAGTTGCTAGACAAAACTAG-----TATTCCGTATTCATGG--TAT-TT-CAG---TGCGTA-TATATAATAA--AATGCGTTCTACATT--------CG--------ATACAGTTTT-ATTGCAGTCATCAAT---ATATATAT-ATTT-----A--AAAAAAAAAGAAA----------ACC-CAAGAATAATA--CATAA-TATTAATGAAGCCATAACTTTTCTAATCTTTTCTA-ATGGACCCCTTA----TCTAACG--GTC---TTAA--TC-CACACACTACC-ACTGCAGTATTCATTTGTGTACTTTCGAACACTGGTGGAGGTACAATCGGAAAGCAACTGAGTCACTATGGAATTACAAAAACGTAAACAAAAGTTAAGAGTTCGGTCCGCTCGTCTAAGAAAGACA--CATTTCGATCGAAATTATTAA-TTTTCA-CGC--TTTTTCAAAAACAGTCGCTAAGGTGTATACATGA-----ATGGTTTTAGCAATACTATAAACACA-TTCAATTGCAATCATTTTTGTTATT-ATC--AAAGTGTGCGTTTCGGAAGTTTTATGAGGCTTTaa
gi|6 : taCCCAGTAAACTTCCGAAACGGTCGTTTTTAGTTT--------ATC----------AGTTTTTCTC-TTCC---AGATGATAGAATACATGTTTGTTTGAT---------CACTGAGAAAC-TTTGCAATCGAAAA-A----ATAAATATA--A------AGCA-C--ATTATAAGTACATAATTAAG----AACGGGT-TT---TGTTAAC-AAAT----------TAATGTTTTTCTTTTTCCGATAAACACCTTC-GGCATAAAACGGGAAGTTACGAAG-CTTGTTCGGA----------------------T-ATGATT--AATTCGCTTC-AG-AG---AG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCAGTT-------GA-A---------AA------------------T------------------T------------------AA------------------ATAACCGCTTGCGGTTAGATAG--------TTTT--------TA-AGAACATCCCCTTTATTCCC------------------CTCAGTGTATTAATGAACTGGGACC-CACGAGCTAATTTGTTGCACAAA-AGC---GACGAATCGTTC----ATATAAAATTAAAAATAAAATTACTTTTT-----AATAACTGTACTAAAC--A------AACC-ACCA-TTG----------GTAGCC--------TCTCAATATTGACTAAGATAAAGTGATA------T-----GTGACGTAATAGCGCG-TATGATAGTAT-----CACGCGTATATATAAA--GGATGATCCTGAGCAAGAGTTACTAGACCAAACTAG-----TACTCCGTACTCATT--------T-CAG---TGCTTA-TACATAATAT--AATGCGTACTTCGTT--------CG--------ATACATTTTTTATTGCAGACATCAAT---AT-T-T-T-TTTT-----AAGAAGAAA---GAAA----------ACC-CAAAAACGATA--CATAA-TATCAGTGAAGCCATAACTTTTCGAATCTTGT-TA-ATGAACCCCTTA----TCTAACG--GTC---TTAA--TC-CGCACACTACC-ACTGCGGTATTCATTTGTGTACTTCCGAACACTAGCGGAGGTACATTCGGAAAGCAACCGGGTCATTATGGAATTACAAAAATGTAAACAAAAGTTAAAAGTTCGGTCCGCTCGTCTAAGAAATACA--CATTTaac
gi|7 : GGCTCATTAAACATCCGAACCAGTTGTTTTAAGTTATAATTTAAGTCTTTATTTTCAAGGTTTGTTC-TTCC---AGAGAATAGATTATATGTTTATTTGAT---------CACTGAGAAAG-TTTGCAAATGAAAATA----ATAAATATA--ATGTACCAGCA-C--GTTATT-CTAAATAATTATG----AACGGGT-TT---GGTTTGC-AAGT----------TAATGGTCGTCTCTTTCCAATAAACGC------ACAGAAAATGGCGAGTCATGAAG-CTTTTTCCGAATAG--CGCCGGTTGCTAA-TGT-ATACAC--AATTCATTAC-AATAG---GG----CACCGCATGGG-------------GGATTGTAGGGGATGTGTTT-------AG-A---------AA------------------TTATCAAGCTGCTAGTGGCT------------------AG------------------AT------------------AG--------TAAT--------TA-AACACATCTCTTTTATTCTT------------------AACAGTGTTTTAATAAACTTGTACT-CACAAGCTAATATATTAT------AGT---GACGAATCGTTC----ATATAAAAATAAAAATAAAATTA--TTTT---T-AGTAACTGTAGCAAGA--ACTTTCTAACTAACTCATTGACTGTAATAAGTAGCTTGATAGCGTCTCAATATTGACTGCAAGAAAGTGATT------T-----GTTACATATTAGCACA-TACAAGATTATAAATACATTTGTATATATAAGATGGCGGTTCCTGAGCAAATGTTACCTGATCAAACTAGCACAATATT-GGTACTCATTG--TAT-TT-CAGACTTG-GAA-TAAAAAATGT---ATGCCGCCTACGCTAGTGAAAACA--------ATATATTTTT-AT--CAGATATCAAT---AT-T-CAT-TTTTTCAACA--AAAAAA---AAAATTATTTTTTCACT-CACTAACGATAATTATAATTTTTTCTCCAGCCATAATTTTACTTCTCCATT-TA-ATGGACCCCTGA----TCCAAC----TC---TCAA--TC-AGCACAATACattg
gi|8 : atTCATTAAACTTCAAAAACGGTCGTTTTTAGTTTGAATTTGTTTC----------AGTTTTATTC-TTCC---AGATGATAGAATACATGTTTATT-GAT---------CACTGAGAGAC-TTTGCAAACGAAAA-A----ATAAATATA--A------AGCA-C--ATTATTAGTACAAATTTAAG----AACGGGT-TT---TGTTTAC-AAAT----------TAATGTTTGTTTCTTTCCGATAA-CACCTTC-GGGAGAAAACGAGGAGTTACGAAG-CTT-TTCGGAAA-G--CGTCGGTCGGTAA-TAT-ATGATC--AATTCACTTC-AT-TC---GG-AAACATAGTATGGG-------------GAACTGTAGGGGATGCGGTT-------AA-A---------AA------------------T------------------T------------------AAGTTACCGCTTGCGATGATAT------------------AG--------TTTT--------TA-AGAACATCTCCTTTATTCTT------------------CTCAGTGAATTAATGAAC------C-CACGAGCTAATTTACTGCACGTA-AGC---GACGAATCGTTC----ATATTAGATTAAAAATAACATTATTTTCT---T-AATAACTGTTCCAAAT--A------AACC-ACCC-TTG----------GTAGCC--------TGTCAGTATTGACTGTGATCAAGTTATT------T-----TAGACGTAATAGTGCG-TGCGATAGTAT-----CACGCGTATAAGCAAG--GGAGGATCCTGAGTAAGTGTTACTAGACCAAACTAG-----TATTCCGTACTCATTGTTT-T-TT-CAG---TGCGTA-TATATAATAT--AATGCGTACTACGTT--------CG--------ATACAGTTTT-ATTGCAGACATCA---------ATAC-ATTT-----A--AA--------AAA----------ATC-CAATAACGATA--CATAA-TATCAGTGAAGTCATAAC-TTTCCAACCCC-T-TACATG-------TA----TCTAACGGTGTCACGTTAGATTCACGCGCACTACatgcttttcactta
gi|9 : AAGGGACATTAAACATCCCAAACAGTCCCTTTT--TTATCATTTAAGTC----------AGTTTTACTCCTTCCTTCAGATGACAGATTACAT-TTTATTTGAC---------CACTGAGAAAG-TATGCAAAAGGAAA-A----ATAATTATA--A------CATA-C--ATTACT--TTTATAATTGTG----AACGAGTGTT---TGTTAAA-ATAT----------TAATGGTCATCTCTTTCTGATA---------------AAAACGGGGAGTCACAAAG-CATATTGGGAATCG--CGTC-ACCAGTAA-TTT-AAGTTTTAAAGT-ATTT---G-TC---AA-TAACACAGTATGGGA------------GGAATGTAGGGGATGT-GTT-------AAGA---------GA------------------T------------------TATCAAGCCAGTTGTGGTGAA------------------GC------------------AG--------TTTT--------TA-AACACATCCCCTACATTCTC------------------CTCAGTGTATTATTGAGCTTGAACC-CTCAAGCTGAATTATTGCATGGA-AGC---AATCAATCACTCATGAATATAAAAAT-AAAATAAAA-------TT---T-AACAGCTGCACTTAACAAA------AATC--CCC-TAG----------GTAGCC--------TCTCAATACTGACAGCGAGGACGTGATCAGAGCATACTAGGTAACATAATAATGCA-TGCAACAGAAT-----CAggaaagtccacgctatatg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAAGTAATTTGTGGTACTAGAGAGTAGATGAATAAAATTAGGTTTCAGACTTATTAGTAAGTTTAAAAAAAAAGTTGAACCCTCCCCCCACTTTTATATGCTTAATGAAGAAACGAAAATTTTAATAAAAAATCATGATTCTATATTACTCTTGTTATTATATTATGACAAAACACCATCTTTTATGGTTTAGTATACTTGAATTATTAAGAAATTATGTAAAATTGTACCGAAATGACAATACATTTTTTTTCAAAGAATGTTTAATTTCTATTATGTCCAAAGAATACTGAATGCACGT
Unaligned ( gi|19 ): ACCCACCGACCCTTTTTTTTCCCTGACAAATCCCACTTACATGGTTGAATTTTTACAAACAAAATAAAAATAGACTGCTACTTTCATCACTTTCATATTCATATTCATTCAGAAAACTAATTTGTGGTATTAGAGTAGTTGTTGGGATGAATAAAATTAG
Unaligned ( gi|21 ): TTTTTGGACAAAATCACACTTACATGCTACTTTCACCACTTTCATATTCTTTCAGAAAACTTATTTGTGGTATTAGAGTAGTATTGTTGTTGTGATGGATAAAATTAGGATTCAGACTTATTAGGAAGTTATTTGAAACGCTAGGTTTTA
Unaligned ( gi|22 ): CGACCCTGTATTTTTTTTGACAAAATCACAACTTAAATGGTTGAAATTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACTTATTTGTTGTATAAGAGTAGTTGTTGTGATGAATAAAATTA
Unaligned ( gi|23 ): TACCCACTGACCCTGTTTTTTTGTTGATAAAATCACACTTACATGGTTGGATTTTTACAAACAAAATAAAATAGAATGCTACTTTCACCACTTTCATATTCATTCAGAAAACAAACTTATTTGTGGTATTAGAA
Unaligned ( gi|29 ): CTAGTCTTATTGATGGGCCTCTGACCCAACGATCTTAGCCCGTTTTTCGTTT
Unaligned ( gi|30 ): CGTAACTAACCTTAACTCAACGGCCTAAATACGTAACTAACAT
Unaligned ( gi|31 ): TTATCTTGGTATAATCTGGATATCATCATTATTAGTGT