lowQualScore : 111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111 1111111111111111
lowQualScore : 111111111 66666666666666666666666666666 111 1111111 11111 1 1 333333333333333333333333333333333333333333333333 22 1111 111 66666666666666666666666666666666666666666666666666666 1111 11 0000000000000000000000000000000000000000000000000000000000000000000000 22 11 1 22222 11 44444444444444444444444444444444444444444444444444 222222 11111 111111 22222222222 1 1111111111111111 11 1 1 22222 222222 1 333 1 1 1 1 4 4 11 1 1 22 1
lowQualScore : 777777777 5 3 4 0 0 5 6 5 9 77777777777777777777777777777 7 1 000 66 8888888 33333 1 1 2 2 5 666666666666666666666666666666666666666666666666 11 1 2 4444 7 99 3 6 666 1 777 22222222222222222222222222222222222222222222222222222 99 4444 6 1 22 66 0 2222222222222222222222222222222222222222222222222222222222222222222222 8 3 1 1 55 11 1 6 8 1 3 44444 4 777 11 2 6 2 00000000000000000000000000000000000000000000000000 6 99 999999 1 8888 2 2 4 1 2 8 4 0 99999 1 222222 4 66 66 44444444444 6 8 55 33 5 0 2222222222222222 8888 8 33 2 0 7 3 22222 6 888888 2 2 11 0 3 4 6 7 4 4 333 5 5 5 7 0 6 0 6 6 6 6 22 7 6 6 6 7 11 5
lowQualScore : ......... . . . . . . . . . ............................. . . ... .. ....... ..... . . . . . ................................................ .. . . .... . .. . . ... . ... ..................................................... .. .... . . .. .. . ...................................................................... . . . . .. .. . . . . . ..... . ... .. . . . .................................................. . .. ...... . .... . . . . . . . . ..... . ...... . .. .. ........... . . .. .. . . ................ .... . .. . . . . ..... . ...... . . .. . . . . . . . ... . . . . . . . . . . . .. . . . . . .. .
lowQualScore : 777777777 9 2 0 4 2 5 5 0 6 00000000000000000000000000000 6 9 111 44 6666666 55555 0 0 3 8 0 555555555555555555555555555555555555555555555555 00 7 2 8888 2 22 7 7 222 4 555 77777777777777777777777777777777777777777777777777777 22 2222 7 4 00 22 8 2222222222222222222222222222222222222222222222222222222222222222222222 0 2 4 4 66 00 4 8 2 4 2 00000 7 222 00 5 7 8 77777777777777777777777777777777777777777777777777 7 22 333333 7 6666 5 6 1 3 0 0 4 8 22222 1 999999 4 11 11 88888888888 0 0 22 22 5 2 0000000000000000 3333 8 88 5 0 0 2 22222 5 888888 5 8 00 8 2 0 7 7 7 0 555 0 0 0 0 0 0 0 0 0 0 0 00 0 0 0 0 0 00 0
consensus : TGTTAAG------CAAATCTTCGTTNAGATCNCCNAGCAAAATTANAT-TNTTG-GA----NACTTCCTAAN-CN-------TTTTCNATATTATTGTTAAAATTGNTA-------AAAA-ANTCTGCATCAGCAGTTTTGGGGCTGTAAAACA--A------NCCTAG-CAGAATAA-TT-T-NTG--CCG-A------TTTAATTTTAATCCATATNGATTCGTTGCA--AAATGTTT-CAAGATTCGAAACATCTAGAATGNATTAAATTCTTNGNCAAATATAC-CAA--AANA--CCCCCA-C--CGTGAT----TTG-TTCTGTCTTTT-CGGTAAGG-TCAATGTCAAACTTNTCTGACTAAGATNCAAAAA-AT---TATCAGAGATGTGTG-T--A------TCTAG-ATGCGTTTCAGTAAA-NATA--GAATATCAAAATCTAAAAAATTGTCAANA---ATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGTG-GGATT---CGTT-GC--C-G---GNCCC-G--GGTTTNTTT-CAATATCTCCAGCTTNTAANAAAATCAGAAGTAAAACAANCAT-AAATT--CTATATT-TTG--AA-CA--A--ATTC------ACG-TAGTACTAAATGTAGATTATGTTGGCATTT-GTNACAGAGTTGCCCCAGAATCAATAATAA-------ATA-AGCA-TGATACGGACGCCTTCATGTGAACTTTTCCGCTTNCTACCACTGTAAT--GCNACCGTGAAATAGACC-AATAGCAGCCCTCCATGTACTTATATCATCCA-T---TTGGGAGTAACA------ANAANAACAAAAATAAAANACTNAAGGCTNCCACCGANACTACCCCACTGTAAACATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAACAAAAA-CAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAA
Reference ( gi|2 ) : TGTTAAG------CATATCTTCATTAAGATCTCCAAGTAAAATTAAAT-TCTTG-GA----CATTTCTTAAT-CG-------TTTTCGATATTATTATTAAGGCTGTTA-------AAGA-AGTCTGCATCAGCTGTTTTAGCGCTATAAAATA--C------GCCTAA-CAGAATAACTT-C-TTGCCCCG-A------TTTAACCTTAACCCAGATAGATTCATTGCA--AAATGTTT-CAAGATTTGGAAC-CCTTGAATGAATTATATTCTTTGCTAAATATAT-CAA--AATA--CCCCAA-C--CATGAT----TTG-TTCTGTCTTTG-CGGTAAGGTTCA---TCAAATATATC--ACTAAGTTTCAATAA-AT---CACCAGAGACGTGTG-T--A------TTTAA-ATGCGTTTCAGTAAATGATA--AAATATCAAAATCTAAAAGAGTGTCAAAT---ATATAATCAATCTTATTTCTTGTACTTCTG-ATATTGCAATGAAAAAAGGACAAGCTATG-GGATT---CATT-GC--CAG---GACCC-G--GGTTTGCTG-CAATATCCCAAGCTTCTAATAAAATCAGAAGTAAAATAAACAT-AAATT--TTATATT-TTG--AA-CA--A--ATTC------ACA-AAGTACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTTCCCCAGAATCAATAATAA-------AT-------TGATATGGATGCCTTCATGTGAACTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACC-AATAGTAGCCCTCCTTGTACTTATATCATCTA-T---TTGGGAGTAACA------ACAACAACAAAAATAAAATACTTAAGGCTACCATCGATACTACCCCACTTTCAACATGGACACCAGTCTCGCACAGACCAAGACGACACATAGAAAAAAGTATTTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCATATAGTATATAAAATATGAAAATAGTAGTATCACATATGAGTCGGAGTGATTTCCGTTATCAAATGAAGCGAATATTACGTAAGCGTTATAATATTAAAATAAACTGAAACATATTTACCTAAGGAATTTATAGTGAACATTCACCCAAGAAAAGTATACACAGATAAACTCACGCACACTCACGCACACTCACACATACGGACTCATATATACATACACGCAAACACCACATTCGTGCTTGTAAAACAAAGTAAATAAACATATGTGCAGTAAGGCAAACATATAGGCAAAACACAAAAACAAATATTCGCGCGCGCACGCGCATGCACGCACGCATACACTCGCACACATGCAT
gi|15 : TGTTAAA------CAAATCTTCAT-ACGATATCTAAGTAAAATTACAT-TCTTG-GAAAGGCAT------AT--G-------TTTTTGATATCATTGTTAAGGCTGTTA-------AA
gi|18 : atTGTTAAG------CAAATCTTCATTAAGATCTCCAAGTAATGTTAAAT-TCTTG-GA----AATTGCCTAAG-CT-------TTTTtcgatccgtttcatcatcttgt
gi|1 : tatGTTAAGATTGTACAAATCTTCGTTGAGATCGCCTAGCAAAATAATAT-TGTTT-GT----TACTTCC-AATGCC-------TTTTTAATATTATTATTAAAATTGGTA-------AAAA-ATTCTGCTTCTGCAGGTCTGGGGCTATAAAACA--A------TCCTAG-CAGAA-AATTTGC-ATATTTAGTA------TTGAA-TTTAACCCATATAGATTCGTTGCA--AAAAGTTT-CTA-ATTCAAAACATCTAGAATGAATTAAATTTCTGGACAAATG-AA-CAAGCAA-G--CTCTCT-C--CATGAT----TTA-TACGATTTTTT-CTGTAAG---CAATGTCAAACTTGTCTGAC--AGATGTAAAAT-AC---TATCAGGAATTTGC--T--G------GTCAGTGTGCGTTTCTGAAAAACATA--GAATATCATAATCCAAAAAATTATCAATA---ATATATTCTAACTTATTTCTTATACTTCTA-ATGTTACAATGGAATATTGATAAACTGTGTAAATTGTACGTT-------A---GTCCT-G--GGTTTCTTT-CAACACCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTT-AAACT--CT-TTTT-TTGTCAA-CA--A--AATC------
gi|3 : taTTAAA------AAGATCTACATTTAGATCTCCAAATATCAGCACAT-TTTTA-AA----AACATCCAAGG-CA-------TTTTCTATATTCTTGTTAAAATT--TACAAAAAAAAGAGAGT-TGAA--AG---TTTTAGGGCTGTAAAA-A--C------AACCAGTCAG--TACCTT-TATTTATTCA-A------CTTGATCACAATCCATATCGACTCTTTACAGTAAAT--TT-CAAGAACAGGTAG-TCTTGTGTGTAGTATACTCTTCGACAAATAAAC-CAG--TAAG--CCTCCA-C--CGTGATTTGTTTGATTTTTTCTATATCGG-AAG--TCA---T---ATTTCTCTGAC-AGGTT--AAGAACAT---TTTC------GTTTA-T--AAGGTCATCTAA-ATGTGTTTCAGTAAAGCATA--AAATATCAAAATCTAACATATTGT---ATTTGATAAAGTTGATTTTGTTTCGAAAACTT-TGTATATTACAATGGAATATCGACATATCGTT-GGGTA---TATTTGC--TTGT--GGCTCAG--GGTTAGATT-CAATATCACCAGCCTCCAGCAACAGCAAGAGTAACACTATCAC-AAAAT--GAACATTGTTA--AAGCATTA--TTTCAGTGTAACA-AAGTATT---TGTActttgatattaattgtatttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgtaccagtaatttgcaagtgttaaataaacctatggcggctctccatgtacttatatcactacgcattgggtaaaaagactagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|6 : aTTGAG------CAAATCTTCGTTTAAATCGCCTAGCAAAAT--AAT-G-TTG---------TTTTTTACT-CACAATGCCTTTTCAATATTATTGTTAAATTTGGTA-------AAAA-AATCTGCATCAGCAATTTTGGGGCTATAAAACA--A------TTGTAA-TAGAATA-----T-TTG--CCA-A------TTTAGTGTT--------T-GGTTCGTTGCA--AGATAACC-TA--ATTTAAAACATCTAGAATGAA----ATGC----CGAGACACAT-GAACGAGTAAGCCCC-A-CTTCATGAT----TTG-
gi|11 : attaggaTTCAG------CAAATCTTCATTTCAATCTCCTAACAGAATTACATGTATTGAGA----C--TTCACAGG-CT-------TGTTCTATATTTTTGTTAAAATTATCA-------AAAA-GCTCTTTGTCAGCTGTTTCAGGGCTGTAGAATA--A------CCCTTG-TAAA--AATTT-C-T----CCG-AAATTGTTTTGATGTGGACCCAAATTGACTCTTCACA--AAATATTTCCAAGaacaatctttctgacagatgtaagtgactatcagaaaggtggtgatcaagaatcagaaatgtggtgatcaagataaatttctgaaaaacatagacacttatttcttatacttctaatgttaatgaaatattgataagctgtgtaaattgtacgttggtcccgttttttttctcaacatctcctgcttgtaaaataatgggtaacaaaacaatcttaaaatcttttttgtcaataaagtctttg
gi|4 : ga------CAAATATTCGTTTAAATCGCCTAGCAAAATAATAT-TGTTT-GT----TACTTCC-AAT-GC-------CTTTTAATACTATTATTAAAATTGGTA-------AAAC-ATTCTGCATCTGCAGTTTTGGGGCTATAAAACAATCCTGCAGACCTAG-CAGAATAAATG-T-ATATATAGTA------TTGAA-TTTAATCCATACGGATTCATTGCA--AAATGTTT-C--GAATTCAAAC------AAT--------TTCTGGAC---ATATATACAA--GCAA--GCCTACTC--CGTGAT----GTG-TACGATCTTTT-CTGTAAG---CAATGTCAAACTTGTCTGGC--AGATGTAAAAG-AC---TA--AAAGGAGTTTG-TTAA------TCAAG-ATAAGTTTCTGAAAA--ACAGCGAATATCATAATCCAAAAAATTATTAATA---ACATATTCGAGCTTATTTCTTATACTTATA-ATGTTACAATTGAACGTTGATAAACTGTG----TT---AATT-GT--ACGTTTGTCTC-G--GATTACTTT-CAATATCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTT-AAACTCCTT-TGTT-GTC--AA-TA--A--AATC------tcca
gi|9 : ttaggattgtaATATTCATTAGAATCATCAAGCAGCAATAAAT-TTTGA-GA----AAGAGCATAAG-CT-------CTCTCTTTAGTTTTATTTAGATTATTG-------AA-A-ATTTCGGATCAGCAGTTTTTGGATTGTAGAA---------------------AATA--TT-T-CTGAACCT-T------TTTAACTTTAATCCAAATTGATTCGTTGCA--GAATGTTT-CTAAATcttt
gi|7 : attaTGCATTAAATTCTTTGTTAAATATAC-CAA--AATT--TTCCCA-C--CATGAT----TTG-TTCTGTCTTTG-AGGTAAGGCTCA---TCAAACTTTTC--AGTAAGTTTCAATAA-AT---CACTAGAGACGTGTG-T--A------TATAA-GTGCGTTTCAGTAAATGATA--ACATATCTAGATATAAAA-AATGTCAATA---ATATAATCAATCTTATTTCTTATACTTCTG-ATATTACAA------------------------TT---CATT-GC--CAG---GACCC-A--GGTTTGTTT-CAATGTCCTAACCCTCTTATAAAATCAGAAGTAAAACTAACAT-ACATT--CTATATT-TGA--AA-CA--A--ATTC------AAG-TAGTACTAAATGTA-ATTATCTTGGCATTT-ATATCAGCGTTACCCCAGAATCAGTGATAA-------ATAGAGCAATGATACGGATGCCTTCATGTGAACTcaggtaatttttggccaaaaaaacaagcagcaccccccccccccccccccccccaccctccatgattgtttctgtcgtttcgatatggttcgtcaaatatatcgctgagatccaaatgtacattataaattgtaacatctagatgggtttcagtaaagttaggatatcgaagtctgt
gi|9 : gaaagatactaataattattcatA--CCCT---C--CATGAT----TGT-TTCTGTCGTTT-CGATATGGTTCG---TCAAATATATC--GCTGAGATCCAA----ATGTACATTATAAAT-TGTAAC--A------TCTAG-ATGGGTTTCAGTAAA-GTTA--GGATATCGAAGTCTgt
gi|7 : attaatattcattagaatcatcaagcagcaataaattttgagaaagagcataagctctctctttagttttatttagattattgaaaatttcggatcagcagtttttggattgtagaaaatatttctgaacctttttaactttaatccaaattgattcgttgcagaatgtttctaaatcaggtaatttttggccaaaaaaacaagcagcaccccccccccccccccccccccGTTTCAAAT---ATAGAATGTATGTTAGTTTT---ACTTCTG-ATTTT---AT---AAGAGG----GTTA---GGA-----CATT-GAAACAA----ACCT-G--GGTC--CTGGCAATG----AA--TTGTAATA---TCAGAAGTATAAGAAATA--AGATTGATTATATTATTG---A-C------ATT--------------TTTTATATCTAGA-TATGTTATCATTT-gt
gi|6 : gaaagatactaataattattcattgcattaaattctttgttaaatataccaaaattttcccaccatgatttgttctgtctttgaggtaaggctcatcaaacttttcagtaagtttcaataaatcactagagacgtgtgtatataagtgcgtttcagtAAAA---ACATAGACA--CTTATTTCTTATACTTCTA-ATGTT--AATGAAATATTGATAAGCTGTGTAAATTGTACGTT-------G---GTCCC-GTTTTTTTTCT--CAACATCTCCTGCTTGTAAAATAATGGGTAACAAAACAATCTTAAAATC--TT---TT-TTGTCAA-TA--A--AGTC------aaattcaagtagtactaaatgtaattatcttggcatttatatcagcgttaccccagaatcagtgataaatagagcaatgatacggatgccttcatgtgaactgt
gi|5 : attaggattgagcaaatcttcgtttaaatcgcctagcaaaataatgttgttttttactcacaatgccttttcaatattattgttaaatttggtaaaaaaatctgcatcagcaattttggggctataaaacaattgtaatagaatatttgccaatttagtgtttggttcgttgcaagataacctaatttaaaacatctagaatgaaatgccgagacacatgaacgagtaagccccacttcatgatttgaacaatctttctgacagatgtaagtgactatcagaaaggtggtgatcaagaatcagaaatgtggtgatcaagataaatttctgAAGCTTCTAATAAAATCAGAAGTAAAATAAACAT-AAATT--CTATATT-TTG--AA-CA--A--ATTC------ACG-TAGTACTAAATGTAGATTATGTTGGCATTT-GTTACAGAGTTGCCCCAGAATCAATAATAA-------ATACAGCATTGATATTGACGCCTTCATGTGAACTTTCCCGCTTCCTACCACTGTAAT--ACCACCATGAAATAGACC-AATAGTAGCCCTCCATGTACTTATATCATCCA-T---TTGGGAGTAACA------ACAA------AAATAAAATACTTAAGGCTACCATCGAAACTACCCCACTGTAAATATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAACAAAAA-CAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAAtttg
gi|10 : AGCTTCTAATAAAATCAGAAGTAGAATAAACAT-AAATT--T-ATTTT-TTG--AA-CA--A--ATTC------ACA-TAGTACTAAAAGTAGAATATGTTGGCATTT-GTAACAGA-----------ATCAATAATAACTAGAGCAT-------TGATATGGATGCCTTCATGTGAACTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGATC-AATAGTAGCCCTCCATGTACTTATATCATCCA-T---TTGGGAGTAACA------GCAACAACAAAAATTAAAGACTAAAGGCTTCCACCGATACTACCCCACTGT-AACAT-GATACC
gi|16 : GAAAAAAAATTA-CAT-A--TT--CTATAT-------AA-CA--ACTATCT------ACCTAATTACGAAATGAAGATTATGTCAATATGTAGTTGCAGGGTTGCTCCAGAtc
gi|12 : AGCTTTTCCG---AATACCAATGGGTT--GCAACCATGAAACAGCCCAAATACCAGCTCTCCATGTGCTTATTTTATATATT---TTGGAAGTAACAAATTTGAAAAAAACAAA---AAAACA-TGGAGGCTGCCA
gi|1 : ttagcatgaacagaaaataaagcagtggcaaggttaccggtgcaaaTACCA--GTAATTTGCAAGTGTTAAATAAACC-TATGGCGGCTCTCCATGTACTTATATCA-CTA-CGCATTGG--GTAAAA------AGACTAGTAGAAATAc
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTAATTGTATTTGAACTATTCCTCTTTGAAACCTGTTCATTAATAGTATAAACATGTTTAAAAATGAAGCAAAAATTTAGTTTCAATCATTTTGTGTACCAGAAATTTACAAGTGTTAAATACACATATGACGGCTCTACATGTACTTATATCACTACCCACTGGGTAACAAGACTAGTAGAAATACCAAAATGTTAGCCACCATTAGCATAGAACCTCTACCAAAAACATTGCTGGGACTACCTAAGGAAAATAAAGAGGTAAAAAATAAAGTAGCAAAGAACGATAAGAGGAATATACATGCTGTTTGCAAATATTAAGAATGAGCTTTTGGGTTTTCCCAGGATGAAGACTTTAAACATAAA
Unaligned ( gi|13 ): TTAATTGTATTTGATTTATTCCTCTTTGCGATCAGTTCATTACAAGTATAAATATATATATAACAAATGAAACGAAAATTTAGATTTAATCATTTTTTGTACCAGAAATTGACAGGTATTAAATAAAC
Unaligned ( gi|14 ): GTTTGCAAATATTATGAATGAGGTTTTTTTTTTAAAAATAAATAACTTTAACAAATGATAGAACCAACAATTTCTTATATGGACATTAAATATTGAGCTAGTTTGTTCATACACAC
Unaligned ( gi|17 ): ATCTTCATTTAGGTCGCCTAGCGGTATTATATTATTTGATTTTTCCAATGCCTTTGTTATATTTCTATTTAAGTT
Alignments
lowQualScore : 111111 11 5555555555555555555555555555555555555555555555555 1111111 4444444444444444444444444444444 1 111 44444444444444444 11111 4444444444444 222222 111111 2222222 11 111 111 33333333333333333333333 11 11111 22 1 111111 11 111 11 111 111 22222222222 1 2 2
lowQualScore : 444444 0 1 1 1 1 1 4 1 7 1 222 44 11 1 11 0 1 1 3 0 0 77 3 2222222222222222222222222222222222222222222222222 8888888 33 0 5 1 1 77 1 55 0 1111111111111111111111111111111 1 1 2 111 22 00000000000000000 77 33333 1 55 1 4 4444444444444 6 777777 0 11 111111 55 0 55 8888888 5 5 3 44 888 111 5 0 1 1 1 444 2 6 1 1 1 6 77777777777777777777777 1 1 6 0 0 1 1 2 1 4 6 5 33 66 0 3 6 55555 6 1 6 88 3 5 0 44 8 6 8 8 4 2 999999 11 3 222 5 11 1 0 6 111 111 6 7 11111111111 1 2 1 1 1 5 6 2 2 4 0 0 4 4 3 2
lowQualScore : ...... . . . . . . . . . . ... .. .. . .. . . . . . . .. . ................................................. ....... .. . . . . .. . .. . ............................... . . . ... .. ................. .. ..... . .. . . ............. . ...... . .. ...... .. . .. ....... . . . .. ... ... . . . . . ... . . . . . . ....................... . . . . . . . . . . . . .. .. . . . ..... . . . .. . . . .. . . . . . . ...... .. . ... . .. . . . ... ... . . ........... . . . . . . . . . . . . . . . .
lowQualScore : 444444 7 0 0 0 3 0 4 0 4 0 000 33 00 0 22 5 0 0 0 6 4 44 0 1111111111111111111111111111111111111111111111111 6666666 77 9 3 0 7 99 7 99 3 7777777777777777777777777777777 0 0 4 666 11 00000000000000000 99 66666 9 11 3 3 4444444444444 6 444444 6 44 111111 33 4 44 1111111 4 7 0 44 111 444 7 7 0 0 0 777 5 7 7 8 5 7 77777777777777777777777 0 0 7 3 8 0 0 6 0 4 5 5 88 99 5 7 7 22222 7 0 7 22 7 2 8 88 0 0 0 0 6 8 222222 00 2 000 0 00 0 7 7 777 777 7 3 55555555555 0 5 0 0 0 3 7 5 5 0 0 0 0 0 0 5
consensus : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANACTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGTAAAA-CAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAAT------NTTAACCCANATNGATTCGTTGCA--AAATGTTT-CAAGATTC-AAACA-----TCTAGAATGNATTAAATTCCTNGACAAATATACCAG--NAAGCCCC-----------------CAC--C----GTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-AGATNCAAA---ANACTATCAGAGACGTG-TG-T--ATCTAG-ATGCGTTTCAG-TAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTG-TG-G---ATTCG-T-CGT-C-G---GNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTA----GATTATGTTGGCATTT-GTNA-CAGAGTTGCCCCAGAATCAATAATAAATAGAGC-ATTG-AT-ACGGATGCCTTCATGTGA------ACTTTT--CCGCTT--NCTACCACTGTAA--TGCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAATAAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
Reference ( family-1690 ) : TGTTAAG------CAAATCTTCGTTNAGATCNCCNAGCAAAATTANAT-TNTTGGANACTTCCTAANCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCATCAGCAGTTTTGGGGCTGTAAAA-CAANCCT--------AG-CAGAA---TAATT---TNT-G--CC--G-A------TTTAAT------TTTAATCCATATNGATTCGTTGCA--AAATGTTT-CAAGATTCGAAACA-----TCTAGAATGNATTAAATTCTTNGNCAAATATACCAA--AANACCCC-----------------CAC--C----GTGATTTGTTCTGTCTTTTCGGTAAGG-T-C--AATGTCAAACTTNTCTGACTAAGATNCAAA---AAATTATCAGAGATGTG-TG-T--ATCTAG-ATGCGTTTCAG-TAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAANAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTG-TGGG---ATTCG-T-TGC-C-G---GNCCCGGGTTTNTT-TCAATATCTCCAGCTTNTAANAAAATCAGAAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTA----GATTATGTTGGCATTT-GTNA-CAGAGTTGCCCCAGAATCAATAATAAATA-AGC-AT-G-AT-ACGGACGCCTTCATGTGA------ACTTTT--CCGCTT--NCTACCACTGTAA--TGCNACCGTGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAANAACAAAAATAAAANACTNAAGGCTNCCACCGANACTACCCCACTGTAAACATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAAC-AAAAACAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAA
gi|1 : GTTAAGATTGTACAAATCTTCGTTGAGATCGCCTAGCAAAATAATAT-TGTTTGTTACTTCCAATGCCTTTTTAATATTATTATTAAAATTGGTAAAAAATTCTGCTTCTGCAGGTCTGGGGCTATAAAA-CAATCCT--------AG-CAGAA----AATT-----T-G--CA--T-A------TTTAGTATTGAATTTAACCCATATAGATTCGTTGCA--AAAAGTTT-CTA-ATTCAAAACA-----TCTAGAATGAATTAAATTTCTGGACAAATGAACAAG--CAAGCTCT-----------------CTC--C----ATGATTTATACGATTTTTTCTGTAAG----C--AATGTCAAACTTGTCTGAC--AGATGTAAA---ATACTATCAGGAATTTGCTG----GTC-AGTGTGCGTTTCTGAAAAA-C-ATAG--AAT-ATCATAATCCAAAAAATTATCAATAATATATTCTAACTTATTTCTTATACTTCTA-ATGTTACAATGGAATATTGATAAACTG-TGTA---AATTG-TACGT-T-A---GTCCTGGGTTTCTT-TCAACACCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAA-CTCT-TTTTTTGTCAACAA--AATCCTTTGAT-ATTAATTGTATTTGAACTA--TTACTCTTT-GCGACCAG---TAC------ATTAATAAT--ATA-AAC-AT-GTATAAAAGATG-----AAGCGAAAATTTAGTTTTAATCATTTTGTGTACCA--GTAATTTGCAAGTGTTAAATAAACCTA-TGGCGGCTCTCCATGTACTTATATC---ACTACGCA-TT---GGGTAAAA------AGACTAGTAGAAATA
gi|10 : taAGCTTCTAATAAAATCAGAAGTAGAATAAACATAAA-TT-TATTTTTTG--AACAA--ATTCACATAGT-ACTAAAAGTA----GAATATGTTGGCATTT-GTAA-CAGA-----------ATCAATAATAACTAGAGC-ATTG-AT-ATGGATGCCTTCATGTGA------ACTTTT--CCGCTT--GCTACCACTGTAA--TGCCACCATGAAATAGATCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------GCAACAACAAAAATTAAAGACTAAAGGCTTCCACCGATACTACCCCACTGT-AACAT-GATACCccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|11 : TTCAG------CAAATCTTCATTTCAATCTCCTAACAGAATTACATGTATT-GAGACTTCACAGGCTTGTTCTATATTTTTGTTAAAATTATCAAAAAGCTCTTTGTCAGCTGTTTCAGGGCTGTAGAA-TAACCCT--------TG-TAAA-----AATT---TCT----CC--G-AAATTGTTTTGAT------GTGGACCCAAATTGACTCTTCACA--AAATATTTCCAAGtc
gi|12 : gaA------GCTTTT--CCG-----AATACCAATGGGT--TGCAACCATGAAACAGCCCAAATACCAGCTCTCCATGTGCTTATTTT---ATA---TATTTTGGAAGTAACAAATTTGAAAAAAACAAA---AAAACA-TGGAGGCTGCCACtcca
gi|15 : ttagcatgaacagaaaataaagcagtggcaaggttaccggtgcaaaTGTTAAA------CAAATCTTCAT-ACGATATCTAAGTAAAATTACAT-TCTTGGAAA-GGCATA--TGTTTTTGATATCATTGTTAAGGCTGTTAAA
gi|16 : atAAAAAAATTACATA-TTCTATAT------AACAACTATCTACCTAATTACGAAATGAA----GATTATGTCAATATGTAGTTG-CAGGGTTGCTCCAGAtcgatccgtttcatcatcttgt
gi|18 : gaTGTTAAG------CAAATCTTCATTAAGATCTCCAAGTAATGTTAAAT-TCTTGGAAATTGCCTAAGCTTTTT
gi|2 : tatTGTTAAG------CATATCTTCATTAAGATCTCCAAGTAAAATTAAAT-TCTTGGACATTTCTTAATCGTTTTCGATATTATTATTAAGGCTGTTAAAGAAGTCTGCATCAGCTGTTTTAGCGCTATAAAA-TACGCCT--------AA-CAGAA---TAACT---TCTTG--CCCCG-A------TTTAAC------CTTAACCCAGATAGATTCATTGCA--AAATGTTT-CAAGATTTGGAAC------CCTTGAATGAATTATATTCTTTGCTAAATATATCAA--AATACCCC-----------------AAC--C----ATGATTTGTTCTGTCTTTGCGGTAAGG-TTC--A---TCAAATATATC--ACTAAGTTTCAAT---AAATCACCAGAGACGTG-TG-T--ATTTAA-ATGCGTTTCAG-TAAA-TGATAA--AAT-ATCAAAATCTAAAAGAGTGTCAAATATATAATCAATCTTATTTCTTGTACTTCTG-ATATTGCAATGAAAAAAGGACAAGCTA-TGGG---ATTCA-T-TGC-CAG---GACCCGGGTTTGCT-GCAATATCCCAAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTTTATATTTTG--AACAA--ATTCACAAAGT-ACTAAATGTA----GATTATGTTGGCATTT-GTAA-CAGAGTTTCCCCAGAATCAATAATAAAT-------T-G-AT-ATGGATGCCTTCATGTGA------ACTTTT--CCGCTT--GCTACCACTGTAA--TGCCACCATGAAATAGACCAA-TAGTAGCCCTCCTTGTACTTATATC---ATC---TA-TTTGGGAGTAACA------ACAACAACAAAAATAAAATACTTAAGGCTACCATCGATACTACCCCACTTTCAACATGGACACCAGTCTCGCACAGACCAAGACGACACATAGAAAAAAGTATTTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCATATAGTATATAAAATATGAAAATAGTAGTATCACATATGAGTCGGAGTGATTTCCGTTATCAAATGAAGCGAATATTACGTAAGCGTTATAATATTAAAATAAACTGAAACATATTTACCTAAGGAATTTATAGTGAACATTCACCCAAGAAAA
gi|3 : TTAAA------AAGATCTACATTTAGATCTCCAAATATCAGCACAT-TTTTAAAAACATCCAAGGCATTTTCTATATTCTTGTTAAAATTTACAAAAAAAAGAGAGTTGAAAGTTTTAGGGCTGTAAAAACAACC----------AGTCAGTACCTTTATT---TAT----TC--A-A------CTTGAT------CACAATCCATATCGACTCTTTACAGTAAAT--TT-CAAGA------ACAGGTAGTCTTGTGTGTAGTATACTCTTCGACAAATAAACCAG--TAAGCCTC-----------------CAC--C----GTGATTTGTTTGATTTTTTCTATA----T-CGGAA-GTCATATTTCTCTGAC--AGGTTAAGA---ACATTTTCGTTTATAAG--G-TC-ATCTAA-ATGTGTTTCAG-TAAAGC-ATAA--AAT-ATCAAAATCTAACATATTGTATTTGATAAAGTTGATTTTGTTTCGAAAACTT-TGTATATTACAATGGAATATCGACATATCGTTGGGTATATTTGCT-TG--T-G---GCTCAGGGTTAGAT-TCAATATCACCAGCCTCCAGCAACAGCAAGAGTAACACTATCACAAA-gtatacacagataaactcacgcacactcacgcacactcacacatacggactcatatatacatacacgcaaacaccacattcgtgcttgtaaaacaaagtaaataaacatatgtgcagtaaggcaaacatataggcaaaacacaaaaacaaatattcgcgcgcgcacgcgcatgcacgcacgcatacactcgcacacatgcat
gi|4 : a------CAAATATTCGTTTAAATCGCCTAGCAAAATAATAT-TGTTTGTTACTTCCAATGCCTTTT-AATACTATTATTAAAATTGGTAAAACATTCTGCATCTGCAGTTTTGGGGCTATAAAA-CAATCCTGCAGACCTAG-CAGAA---TAAATGTATAT-A--TA--GTA------TTGAAT------TT-AATCCATACGGATTCATTGCA--AAATGTTT-CGA-ATTC-AAACA--------------------ATTTCTGGACATATATACAAG--CAAGCCTA-----------------CTC--C----GTGATGTGTACGATCTTTTCTGTAAG----C--AATGTCAAACTTGTCTGGC--AGATGTAAA---AGACTA--AAAGGAGTT-TG-TTAATCAAG-ATAAGTTTCTG--AAA-A-ACAGCGAAT-ATCATAATCCAAAAAATTATTAATAACATATTCGAGCTTATTTCTTATACTTATA-ATGTTACAATTGAACGTTGATAAACTG-TG------TTAA-T-TGTAC-GTTTGTCTCGGATTACTT-TCAATATCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAACTCCTTTGTTGTC--AATAA--AATCatgaacattgttaaagcattatttcagtgtaacaaagtatttgta
gi|5 : ttaggattgtaAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTA----GATTATGTTGGCATTT-GTTA-CAGAGTTGCCCCAGAATCAATAATAAATACAGC-ATTG-AT-ATTGACGCCTTCATGTGA------ACTTTC--CCGCTT--CCTACCACTGTAA--TACCACCATGAAATAGACCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------A------CAAAAATAAAATACTTAAGGCTACCATCGAAACTACCCCACTGTAAATATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAAC-AAAAACAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAActtt
gi|6 : aTTGAG------CAAATCTTCGTTTAAATCGCCTAGCAAAATAATGT-TGTTTTTTACTCACAATGCCTTTTCAATATTATTGTTAAATTTGGTAAAAAAATCTGCATCAGCAATTTTGGGGCTATAAAA-CAATTGT--------AA-TAGAA---TA------TTT-G--CC--A-A------TTTAGT------GTT---------TGGTTCGTTGCA--AGATAACC-TAA--TTTAAAACA-----TCTAGAATG----AAATGCCGAGACACATG-AACGA--GTAAGCCC-----------------CACTTC----ATGATTTG---------------AA-----C--AAT------CTT-TCTGAC--AGATGTAAG---TGACTATCAGAAAGGTG--G-TG-ATCAAG-A-----ATCAG--AAA-T-GTGG----TGATCAAGAT----AAATTTCTGAAAAACATAGACA--CTTATTTCTTATACTTCTA-ATGTT--AATGAAATATTGATAAGCTG-TGTA---AATTG-TACGT-T-G---GTCCCGTTTTTTTTCTCAACATCTCCTGCTTGTAAAATAATGGGTAACAAAACAATCTTAAA-ATCT-T-TTTTGTCAATAA--AGTC
gi|7 : attaggaTGCATTAAATTCTTTGTTAAATATACCAA--AATTTTCC-----------------CAC--C----ATGATTTGTTCTGTCTTTGAGGTAAGGCT-C--A---TCAAACTTTTC--AGTAAGTTTCAAT---AAATCACTAGAGACGTG-TG-T--ATATAA-GTGCGTTTCAG-TAAA-TGATAA--CAT-ATCTAGATATAAAAAAT-GTCAATAATATAATCAATCTTATTTCTTATACTTCTG-ATATTACA---------------------------ATTCA-T-TGC-CAG---GACCCAGGTTTGTT-TCAATGTCCTAACCCTCTTATAAAATCAGAAGTAAAACTAACATACA-TTCTATATTTGA--AACAA--ATTCAAGTAGT-ACTAAATGTA-----ATTATCTTGGCATTT-ATAT-CAGCGTTACCCCAGAATCAGTGATAAATAGAGCAAT-G-AT-ACGGATGCCTTCATGTGA------ACTtttg
gi|8 : gaaagatactaataattattcatGTTAAATACACATA-TGACGGCTCTACATGTACTTATATCACTACC---CA-CT---GGGTAACA------AGACTAGTAGAAATAgt
gi|9 : ttaattgtatttgaactattcctctttgaaacctgttcattaatagtataaacatgtttaaaaatgaagcaaaaatttagtttcaatcattttgtgtaccagaaatttacaagtAATATTCATTAGAATCATCAAGCAGCAATAAAT-TTTGAGAAAGAGCATAAGCTCTCTCTTTAGTTTTATTTAGATTATTGAAAATTTCGG-ATCAGCAGTTTTTGGATTGTAGAA----------------------AA---TA-TT---TCT-GAACC--T-T------TTTAAC------TTTAATCCAAATTGATTCGTTGCA--GAATGTT--------TCTAAA-------TC-AG---GTA----ATTTTTGGCCAAAAA-AACAAGCAGCACCCCCCCCCCCCCCCCCCCCCCAC--CCTCCATGATTGTTTCTGTCGTTTCGATATGG-T-T----CGTCAAATATATC--GCTGAGATCCAAATGTACATTAT---AAAT-TG-TAAC--ATCTAG-ATGGGTTTCAG-TAAA-G-TTAG--GAT-ATCGAAGTCTccaaaatgttagccaccattagcatagaacctctaccaaaaacattgctgggactacctaaggaaaataaagaggtaaaaaataaagtagcaaagaacgataagaggaatatacatgctgtttgcaaatattaagaatgagcttttgggttttcccaggatgaagactttaaacataaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTAATTGTATTTGATTTATTCCTCTTTGCGATCAGTTCATTACAAGTATAAATATATATATAACAAATGAAACGAAAATTTAGATTTAATCATTTTTTGTACCAGAAATTGACAGGTATTAAATAAAC
Unaligned ( gi|14 ): GTTTGCAAATATTATGAATGAGGTTTTTTTTTTAAAAATAAATAACTTTAACAAATGATAGAACCAACAATTTCTTATATGGACATTAAATATTGAGCTAGTTTGTTCATACACAC
Unaligned ( gi|17 ): ATCTTCATTTAGGTCGCCTAGCGGTATTATATTATTTGATTTTTCCAATGCCTTTGTTATATTTCTATTTAAGTT
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555555555555555 2222222 3333333333333333333333333333 1111 333333333333333 11111 4444444444444 22222222 33333333333 11 111 111 66666666666666666666 11 11 11 111 111 22222222 111 2 1 1
lowQualScore : 444444 0 1 1 1 1 1 4 1 5 1 66 22 22 1 1 11 0 1 1 77 77 2 2222222222222222222222222222222222222222222222222 3333333 3 0 3 1 1 77 1 8888888888888888888888888888 1 1 1 5 0000 1 1 555555555555555 77 33333 1 44 1 3 4444444444444 6 88888888 0 11 66 1 2 77 0 22 44444444444 5 5 3 44 888 111 5 0 1 1 444 2 6 1 2 1 1 6 55555555555555555555 1 1 6 0 0 1 1 1 4 6 5 33 66 0 3 6 8 1 3 3 44 5 4 0 11 2 1 5 11 6 111 111 6 7 00000000 111 3 44 6 6 1 1 1 5 5 1 1 1 1
lowQualScore : ...... . . . . . . . . . . .. .. .. . . .. . . . .. .. . ................................................. ....... . . . . . .. . ............................ . . . . .... . . ............... .. ..... . .. . . ............. . ........ . .. .. . . .. . .. ........... . . . .. ... ... . . . . ... . . . . . . . .................... . . . . . . . . . . . .. .. . . . . . . . .. . . . .. . . . .. . ... ... . . ........ ... . .. . . . . . . . . . . .
lowQualScore : 444444 7 0 9 0 3 0 4 0 3 0 11 99 77 0 0 22 5 0 0 66 44 1 1111111111111111111111111111111111111111111111111 0000000 6 4 0 0 7 99 7 0000000000000000000000000000 9 0 6 9 7777 0 9 777777777777777 99 66666 9 77 3 0 4444444444444 6 77777777 6 44 33 0 3 66 4 44 11111111111 4 7 0 44 111 444 7 7 0 0 777 5 7 7 5 8 5 7 88888888888888888888 0 0 7 3 8 0 0 0 4 5 5 88 99 5 7 7 0 0 6 2 00 8 6 8 00 5 0 0 00 7 777 777 7 3 00000000 777 2 88 7 7 0 0 0 5 5 0 0 0 0
consensus : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGTAAAA-CAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAAT------NTTAACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-A-AACA-TCTAGAATGNATTAAATTCCTNGACAAATANAC---CAGCAAGCCCC---------------CAC--C----GTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAG-TAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTG-TGT-A----ATTCG-TACGTC-GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
Reference ( family-1690 ) : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGTAAAA-CAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAAT------NTTAACCCANATNGATTCGTTGCA--AAATGTTTCAAGATTC-A-AACA-TCTAGAATGNATTAAATTCCTNGACAAATATAC---CAGNAAGCCCC---------------CAC--C----GTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAG-TAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTG-TG--G----ATTCG-T-CGTC-GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTNACAGAGTTGCCCCAGAATCAATAATAAATAGAGCATTGATACGGATGCCTTCATGTGAA--CTTTTCCGCTTNCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
gi|1 : GTTAAGATTGTACAAATCTTCGTTGAGATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTTTAATATTATTATTAAAATTGGTAAAAAATTCTGCTTCTGCAGGTCTGGGGCTATAAAA-CAATCCT--------AG-CAGAA----AATT-----T-G--CA--T-A------TTTAGTATTGAATTTAACCCATATAGATTCGTTGCA--AAAAGTTTCTA-ATTCAA-AACA-TCTAGAATGAATTAAATTTCTGGACAAATGAAC---AAGCAAGCTCT---------------CTC--C----ATGATTTATACGATTTTTTCTGTAAG----C--AATGTCAAACTTGTCTGAC--A-GATGTAAA-ATACTATCAGGAATTTGCT-G-------GTC-AGTGTGCGTTTCTGAAAAA-C-ATAG--AAT-ATCATAATCCAAAAAATTATCAATAATATATTCTAACTTATTTCTTATACTTCTA-ATGTTACAATGGAATATTGATAAACTG-TGTAA----ATT-G-TACGTT-AGTCCTGGGTTTCTT-TCAACACCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAA-CTCT-TTTTTTGTCAACAA--AATCCTTTGAT-ATTAATTGTA
gi|1 : taTACCA--GTAATTTGCAAGTGTTAAATAAACCTA-TGGCGGCTCTCCATGTACTTATATC---ACTACGCA-TT---GGGTAAAA------AGACTAGTAGAAAT---Atttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgtaccagtaatttgcaagtgttaaataaacctatggcggctctccatgtacttatatcactacgcattgggtaaaaagactagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|10 : tagttaagattgtacaaatcttcgttgagatcgcctagcaaaataatattgtttgttacttccaatgcctttttaatattattattaaaattggtaaaaaattctgcttctgcaggtctggggctataaaacaatcctagcagaaaatttgcatatttagtattgaatttaacccatatagattcgttgcaaaaagtttctaattcaaaacatctagaatgaattaaatttctggacaaatgaacaagcaagctctctccatgatttatacgattttttctgtaagcaatgtcaaacttgtctgacagatgtaaaatactatcaggaatttgctggtcagtgtgcgtttctgaaaaacatagaatatcataatccaaaaaattatcaataatatattctaacttatttcttatacttctaatgttacaatggaatattgataaactgtgtaaattgtacgttagtcctgggtttctttcaacacctcctgcttgtaaaagaaggagtagtaaagcaatcttaaactctttttttgtcaacaaaatcctttgatattaattgtatttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgAGCTTCTAATAAAATCAGAAGTAGAATAAACATAAA-TT-TATTTTTTG--AACAA--ATTCACATAGT-ACTAAAAGTAGAATATGTTGGCATTT-GTAA-----------CAGAATCAATAATAACTAGAGCATTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGATCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------GCAACAACAAAAAT---TAAAGACTAAAGGCTTCCACCGATACTACCCCACTGT-AACAT-GATACCccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|11 : TTCAG------CAAATCTTCATTTCAATCTCCTAACAGAATTACATGTATT-GAGA--CTTCACAGGCTTGTTCTATATTTTTGTTAAAATTATCAAAAAGCTCTTTGTCAGCTGTTTCAGGGCTGTAGAA-TAACCCT--------TG-TAAA-----AATT---TCT----CC--G-AAATTGTTTTGAT------GTGGACCCAAATTGACTCTTCACA--AAATATTTCCAAGTCC-A-tc
gi|12 : gaAGCATGAACAGAAAATAAAGCAGTGGCAAGGTTACCG--GTGCAAAAGCTTTTCCG---AATACCAATGGGTT--GCAACCATGAAACAGCCCAAATACCAGCTCTCCATGTGCTTATTTT---ATA---TATTTTGGAAGTAACAAATTTGAAAAAAACAAA------AAAACA-TGGAGGCTGCCAC
gi|15 : ttTGTTAAA------CAAATCTTCAT-ACGATATCTAAGTAAAATTACAT-TCTTGGAAAGGC-----ATATGTTTTTGATATCATTGTTAAGGCTGTTAAATCGATCCGTTTCATCA-TCTTG
gi|16 : atAAAAAAATTACATA-TTCTATAT------AACAACTATCTACCTAATTACGAAATGAAGATTATGTCAATATGTAGTTGCAGGGTTGCTCCAGAt
gi|18 : gaTGTTAAG------CAAATCTTCATTAAGATCTCCAAGTAATGTTAAAT-TCTTGGAAA--TTGCCTAAGCTTTTT
gi|2 : tatTGTTAAG------CATATCTTCATTAAGATCTCCAAGTAAAATTAAAT-TCTTGGACA--TTTCTTAATCGTTTTCGATATTATTATTAAGGCTGTTAAAGAAGTCTGCATCAGCTGTTTTAGCGCTATAAAA-TACGCCT--------AA-CAGAA---TAACT---TCTTG--CCCCG-A------TTTAAC------CTTAACCCAGATAGATTCATTGCA--AAATGTTTCAAGATTT-GGAAC--CCTTGAATGAATTATATTCTTTGCTAAATATAT---CAAAATACCCC---------------AAC--C----ATGATTTGTTCTGTCTTTGCGGTAAGG-TTC--A---TCAAATATATC--ACT-AAGTTTCAAT-AAATCACCAGAGACGTG-T-GT------ATTTAA-ATGCGTTTCAG-TAAA-TGATAA--AAT-ATCAAAATCTAAAAGAGTGTCAAATATATAATCAATCTTATTTCTTGTACTTCTG-ATATTGCAATGAAAAAAGGACAAGCTA-TG--GG---ATTCA-T-TGCCAGGACCCGGGTTTGCT-GCAATATCCCAAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTTTATATTTTG--AACAA--ATTCACAAAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTTCCCCAGAATCAATAATAAAT-------TGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGTAGCCCTCCTTGTACTTATATC---ATC---TA-TTTGGGAGTAACA------ACAACAACAAAAAT---AAAATACTTAAGGCTACCATCGATACTACCCCACTTTCAACATGGACACCAGTCTCGCACAGACCAAGACGACACATAGAAAAAAGTATTTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCATATAGTATATAAAATATGAAAATAGTAGTATCACATATGAGTCGGAGTGATTTCCGTTATCAAATGAAGCGAATATTACGTAAGCGTTATAATATTAAAATAAACTGAAACATATTTACCTAAGGAATTTATAGTGAACATTCACCCAAGAAAA
gi|3 : TTAAA------AAGATCTACATTTAGATCTCCAAATATCAGCACAT-TTTTAAAAA--CATCCAAGGCATTTTCTATATTCTTGTTAAAATTTACAAAAAAAAGAGAGTTGAAAGTTTTAGGGCTGTAAAAACAACC----------AGTCAGTACCTTTATT---TAT----TC--A-A------CTTGAT------CACAATCCATATCGACTCTTTACAGTAAAT--TTCAAGAA-C-A-GGTAGTCTTGTGTGTAGTATACTCTTCGACAAATAAAC---CAGTAAGCCTC---------------CAC--C----GTGATTTGTTTGATTTTTTCTATA----T-CGGAA-GTCATATTTCTCTGAC--A-GGTTAAGA-ACATTTT------CGTT-T-ATAAGGTCATCTAA-ATGTGTTTCAG-TAAAGC-ATAA--AAT-ATCAAAATCTAACATATTGTATTTGATAAAGTTGATTTTGTTTCGAAAACTT-TGTATATTACAATGGAATATCGACATATCGTTG--GGTATATTTGCT-TGT--GGCTCAGGGTTAGAT-TCAATATCACCAGCCTCCAGCAACAGCAAGAGTAACACTATCACAAA-gtatacacagataaactcacgcacactcacgcacactcacacatacggactcatatatacatacacgcaaacaccacattcgtgcttgtaaaacaaagtaaataaacatatgtgcagtaaggcaaacatataggcaaaacacaaaaacaaatattcgcgcgcgcacgcgcatgcacgcacgcatacactcgcacacatgcat
gi|4 : a------CAAATATTCGTTTAAATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTT-AATACTATTATTAAAATTGGTAAAACATTCTGCATCTGCAGTTTTGGGGCTATAAAA-CAATCCTGCAGACCTAG-CAGAA---TAAATGTATAT-A--TA--GTA------TTGAAT-------TTAATCCATACGGATTCATTGCA--AAATGTTTCGA-ATTC-A-AACA----------------ATTTCTGGACATATATAC---AAGCAAGCCTA---------------CTC--C----GTGATGTGTACGATCTTTTCTGTAAG----C--AATGTCAAACTTGTCTGGC--A-GATGTAAA-AGACTA--AAAGGAGTT-T-GTTA----ATCAAG-ATAAGTTTCTG--AAA-A-ACAGCGAAT-ATCATAATCCAAAAAATTATTAATAACATATTCGAGCTTATTTCTTATACTTATA-ATGTTACAATTGAACGTTGATAAACTG-TGTTA----ATT-G-TACGTT-TGTCTCGGATTACTT-TCAATATCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAACTCCTTTGTTGTC--AATAA--AATCatgaacattgttaaagcattatttcagtgtaacaaagtatttgta
gi|5 : ttaggattgtaAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTTACAGAGTTGCCCCAGAATCAATAATAAATACAGCATTGATATTGACGCCTTCATGTGAA--CTTTCCCGCTTCCTACCACTGTAAT--ACCACCATGAAATAGACCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGT------------AACAACAAAAAT---AAAATACTTAAGGCTACCATCGAAACTACCCCACTGTAAATATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAAC-AAAAACAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAActtt
gi|6 : aTTGAG------CAAATCTTCGTTTAAATCGCCTAGCAAAATAATGT-TGTTTTTTA--CTCACAATGCCTTTTCAATATTATTGTTAAATTTGGTAAAAAAATCTGCATCAGCAATTTTGGGGCTATAAAA-CAATTGT--------AA-TAGAA---TA------TTT-G--CC--A-A------TTTAGT------GT---------TTGGTTCGTTGCA--AGATAACCTAAT-TTA-A-AACA-TCTAGAATG----AAATGCCGAGACACATGAAC---GAGTAAG-CCC---------------CACTTC----ATGATTTG---------------AA-----C--AAT------CTT-TCTGAC--A-GATGTAAG-TGACTATCAGAAAGGTG---GTG-----ATCAAG-A-----ATCAG--AAA-T-GTGG----TGATCAAGAT----AAATTTCTGAAAAACATAGACA--CTTATTTCTTATACTTCTA-ATGTT--AATGAAATATTGATAAGCTG-TGTAA----ATT-G-TACGTT-GGTCCCGTTTTTTTTCTCAACATCTCCTGCTTGTAAAATAATGGGTAACAAAACAATCTTAAA-ATCT-T-TTTTGTCAATAA--AGTC
gi|7 : attaggaTGCATTAAATTCTTTGTTAAATATAC---CAAAATTTTCC---------------CAC--C----ATGATTTGTTCTGTCTTTGAGGTAAGGCT-C--A---TCAAACTTTTC--AGT-AAGTTTCAAT-AAATCACTAGAGACGTG-T-GT------ATATAA-GTGCGTTTCAG-TAAA-TGATAA--CAT-ATCTAGATATAAAAAAT-GTCAATAATATAATCAATCTTATTTCTTATACTTCTG-ATATTACAAT-----------------------------TCA-T-TGCCAGGACCCAGGTTTGTT-TCAATGTCCTAACCCTCTTATAAAATCAGAAGTAAAACTAACATACA-TTCTATATTTGA--AACAA--ATTCAAGTAGT-ACTAAATGTA-ATTATCTTGGCATTT-ATATCAGCGTTACCCCAGAATCAGTGATAAATAGAGCAATGATACGGATGCCTTCATGTGAA--CTtttg
gi|8 : gaaagatactaataattattcatAAATACACATA-TGACGGCTCTACATGTACTTATATCACTACC---CA-CT---GGGTAACA------AGACTAGTAGAAATACCAAAATGTTA---GCCACCAgt
gi|9 : ttaattgtatttgaactattcctctttgaaacctgttcattaatagtataaacatgtttaaaaatgaagcaaaaatttagtttcaatcattttgtgtaccagaaatttacaagtgttAATATTCATTAGAATCATCAAGCAGCAATAAAT-TTTGAGAAA--GAGCATAAGCTCTCTCTTTAGTTTTATTTAGATTATTGAAAATTTCGG-ATCAGCAGTTTTTGGATTGTAGAA----------------------AA---TA-TT---TCT-GAACC--T-T------TTTAAC------TTTAATCCAAATTGATTCGTTGCA--GAATGTTTC------T-A-A--A-TC-AG---GT----AATTTTTGGCCAAAAAAACAAGCAGCACCCCCCCCCCCCCCCCCCCCCCAC--CCTCCATGATTGTTTCTGTCGTTTCGATATGG-T-T----CGTCAAATATATC--GCTGA-GATCCAAATGTAC-ATTATAAAT-TG-TAAC------ATCTAG-ATGGGTTTCAG-TAAA-G-TTAG--GAT-ATCGAAGTCTttagcatagaacctctaccaaaaacattgctgggactacctaaggaaaataaagaggtaaaaaataaagtagcaaagaacgataagaggaatatacatgctgtttgcaaatattaagaatgagcttttgggttttcccaggatgaagactttaaacataaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTAATTGTATTTGATTTATTCCTCTTTGCGATCAGTTCATTACAAGTATAAATATATATATAACAAATGAAACGAAAATTTAGATTTAATCATTTTTTGTACCAGAAATTGACAGGTATTAAATAAAC
Unaligned ( gi|14 ): GTTTGCAAATATTATGAATGAGGTTTTTTTTTTAAAAATAAATAACTTTAACAAATGATAGAACCAACAATTTCTTATATGGACATTAAATATTGAGCTAGTTTGTTCATACACAC
Unaligned ( gi|17 ): ATCTTCATTTAGGTCGCCTAGCGGTATTATATTATTTGATTTTTCCAATGCCTTTGTTATATTTCTATTTAAGTT
Alignments
lowQualScore : 111111 555555555555555555555555555555555555555555555555555 222222222 4444444444444444444444444444444 4444444444444444444 1111 4444444444444 22222222 33333333333 222 111 11111 222222222 11 11 11 111 111 22222222 111 2 1 1
lowQualScore : 444444 0 1 1 1 1 1 4 1 5 1 66 22 22 1 1 11 0 1 1 77 5 1 000000000000000000000000000000000000000000000000000 111111111 0 3 1 1 77 1 1 3333333333333333333333333333333 1 1 1 1 4 1 4444444444444444444 2222 77 1 1 44 1 3 4444444444444 6 88888888 0 11 66 1 2 77 0 22 44444444444 5 5 3 8 333 111 5 0 1 1 444 2 6 1 2 1 1 22222 6 111111111 1 1 6 0 0 1 1 1 4 6 5 33 66 0 3 6 8 1 3 44 3 0 11 2 0 5 11 6 111 111 6 7 00000000 111 3 44 6 6 1 1 1 5 5 1 1 1 1
lowQualScore : ...... . . . . . . . . . . .. .. .. . . .. . . . .. . . ................................................... ......... . . . . .. . . ............................... . . . . . . ................... .... .. . . .. . . ............. . ........ . .. .. . . .. . .. ........... . . . . ... ... . . . . ... . . . . . . ..... . ......... . . . . . . . . . . . .. .. . . . . . . .. . . .. . . . .. . ... ... . . ........ ... . .. . . . . . . . . . . .
lowQualScore : 444444 7 0 9 0 3 0 4 0 3 0 11 99 77 0 0 22 5 0 0 66 7 7 111111111111111111111111111111111111111111111111111 333333333 4 0 0 7 99 7 0 9999999999999999999999999999999 9 0 6 0 3 7 3333333333333333333 1111 99 4 9 77 3 0 4444444444444 6 77777777 6 44 33 0 3 66 4 44 11111111111 4 7 0 7 999 444 7 7 0 0 777 5 7 7 5 8 5 55555 7 777777777 0 0 7 3 8 0 0 0 4 5 5 88 99 5 7 7 0 4 2 00 8 8 00 5 2 0 00 7 777 777 7 3 00000000 777 2 88 7 7 0 0 0 5 5 0 0 0 0
consensus : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGT-AAAACAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAATNTT------AACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-G-AA-CA-----TCTAGAATGNATTAAATTCCTNGACAAATANACNAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAGTAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-TA-ATTCGTACGTC-GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
Reference ( family-1690 ) : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGT-AAAACAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAATNTT------AACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-A-AA-CA-----TCTAGAATGNATTAAATTCCTNGACAAATANACCAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAGTAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-TA-ATTCGTACGTC-GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
gi|1 : GTTAAGATTGTACAAATCTTCGTTGAGATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTTTAATATTATTATTAAAATTGGTAAAAAATTCTGCTTCTGCAGGTCTGGGGCTAT-AAAACAATCCT--------AG-CAGAA----AATT---T---G--CA--T-A------TTTAGTATTGAATTTAACCCATATAGATTCGTTGCA--AAAAGTTTCTA-ATTC-A-AAACA-----TCTAGAATGAATTAAATTTCTGGACAAATGAACAAGCAAG-------------------CTCTCT----C--CATGATTTATACGATTTTTTCTGTAAG----C--AATGTCAAACTTGTCTGAC--A-GATGTAAA-ATACTATCAGGAATTTGCT-G-------GTC-AGTGTGCGTTTCTGAAAA-ACATAG--AAT-ATCATAATCCAAAAAATTATCAATAATATATTCTAACTTATTTCTTATACTTCTA-ATGTTACAATGGAATATTGATAAACTGT---G-TA-AATTGTACGTT-AGTCCTGGGTTTCTT-TCAACACCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAA-CTCT-TTTTTTGTCAACAA--AATCCTTTGAT-ATTAATTGTA
gi|1 : taTACCA--GTAATTTGCAAGTGTTAAATAAACCTA-TGGCGGCTCTCCATGTACTTATATC---ACTACGCA-TT---GGGTAAAA------AGACTAGTAGAAAT---Atttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgtaccagtaatttgcaagtgttaaataaacctatggcggctctccatgtacttatatcactacgcattgggtaaaaagactagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|10 : tagttaagattgtacaaatcttcgttgagatcgcctagcaaaataatattgtttgttacttccaatgcctttttaatattattattaaaattggtaaaaaattctgcttctgcaggtctggggctataaaacaatcctagcagaaaatttgcatatttagtattgaatttaacccatatagattcgttgcaaaaagtttctaattcaaaacatctagaatgaattaaatttctggacaaatgaacaagcaagctctctccatgatttatacgattttttctgtaagcaatgtcaaacttgtctgacagatgtaaaatactatcaggaatttgctggtcagtgtgcgtttctgaaaaacatagaatatcataatccaaaaaattatcaataatatattctaacttatttcttatacttctaatgttacaatggaatattgataaactgtgtaaattgtacgttagtcctgggtttctttcaacacctcctgcttgtaaaagaaggagtagtaaagcaatcttaaactctttttttgtcaacaaaatcctttgatattaattgtatttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgAGCTTCTAATAAAATCAGAAGTAGAATAAACATAAA-TT-TATTTTTTG--AACAA--ATTCACATAGT-ACTAAAAGTAGAATATGTTGGCATTT-GTAACAGA-----------ATCAATAATAACTAGAGCATTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGATCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------GCAACAACAAAAAT---TAAAGACTAAAGGCTTCCACCGATACTACCCCACTGT-AACAT-GATACCccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|11 : TTCAG------CAAATCTTCATTTCAATCTCCTAACAGAATTACATGTATT-GAGA--CTTCACAGGCTTGTTCTATATTTTTGTTAAAATTATCAAAAAGCTCTTTGTCAGCTGTTTCAGGGCTGT-AGAATAACCCT--------TG-TAAA-----AATT---TCT----CC--G-AAATTGTTTTGATGTG------GACCCAAATTGACTCTTCACA--AAATATTTCCA-AGTC-tc
gi|12 : gaAGCATGAACAGAAAATAAAGCAGTGGCAAGGTTACCG--GTGCAAAAGCTTTTCCG---AATACCAATGGGTT--GCAACCATGAAACAGCCCAAATACCAGCTCTCCATGTGCTTATTTT---ATA---TATTTTGGAAGTAACAAATTTGAAAAAAACAAA------AAAACA-TGGAGGCTGCCACca
gi|15 : ttTGTTAAA------CAAATCTTCAT-ACGATATCTAAGTAAAATTACAT-TCTTGGAAAGGC-----ATATGTTTTTGATATCATTGTTAAGGCTGTTAAATCGATCCGTTTCATCA-TCTTG
gi|16 : atAAAAAAATTACATA-TTCTATAT------AACAACTATCTACCTAATTACGAAATGAAGATTATGTCAATATGTAGTTGCAGGGTTGCTCCAGAt
gi|18 : gaTGTTAAG------CAAATCTTCATTAAGATCTCCAAGTAATGTTAAAT-TCTTGGAAA--TTGCCTAAGCTTTTT
gi|2 : tatTGTTAAG------CATATCTTCATTAAGATCTCCAAGTAAAATTAAAT-TCTTGGACA--TTTCTTAATCGTTTTCGATATTATTATTAAGGCTGTTAAAGAAGTCTGCATCAGCTGTTTTAGCGCTAT-AAAATACGCCT--------AA-CAGAA---TAACT---TCTTG--CCCCG-A------TTTAACCTT------AACCCAGATAGATTCATTGCA--AAATGTTTCAAGATTT-GGAA-C------CCTTGAATGAATTATATTCTTTGCTAAATATATCAAAATA-------------------CCCCAA----C--CATGATTTGTTCTGTCTTTGCGGTAAGG-TTC--A---TCAAATATATC--ACT-AAGTTTCAAT-AAATCACCAGAGACGTG-T-GT------ATTTAA-ATGCGTTTCAGTAAA-TGATAA--AAT-ATCAAAATCTAAAAGAGTGTCAAATATATAATCAATCTTATTTCTTGTACTTCTG-ATATTGCAATGAAAAAAGGACAAGCTAT---G-GG-ATTCAT-TGCCAGGACCCGGGTTTGCT-GCAATATCCCAAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTTTATATTTTG--AACAA--ATTCACAAAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTTCCCCAGAATCAATAATAAAT-------TGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGTAGCCCTCCTTGTACTTATATC---ATC---TA-TTTGGGAGTAACA------ACAACAACAAAAAT---AAAATACTTAAGGCTACCATCGATACTACCCCACTTTCAACATGGACACCAGTCTCGCACAGACCAAGACGACACATAGAAAAAAGTATTTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCATATAGTATATAAAATATGAAAATAGTAGTATCACATATGAGTCGGAGTGATTTCCGTTATCAAATGAAGCGAATATTACGTAAGCGTTATAATATTAAAATAAACTGAAACATATTTACCTAAGGAATTTATAGTGAACATTCACCCAAGAAAA
gi|3 : TTAAA------AAGATCTACATTTAGATCTCCAAATATCAGCACAT-TTTTAAAAA--CATCCAAGGCATTTTCTATATTCTTGTTAAAATTTACAAAAAAAAGAGAGTTGAAAGTTTTAGGGCTGTAAAAACAA--CC--------AGTCAGTACCTTTATT---TAT----TC--A-A------CTTGATCAC------AATCCATATCGACTCTTTACAGTAAA--TTTCAA------G-AA-CAGGTAGTCTTGTGTGTAGTATACTCTTCGACAAATAAACCAGTAAG-------------------CCTCCA----C--CGTGATTTGTTTGATTTTTTCTATA----T-CGGAA-GTCATATTTCTCTGAC--A-GGTTAAGA-ACATTTT------CGTT-T-ATAAGGTCATCTAA-ATGTGTTTCAGTAAAGC-ATAA--AAT-ATCAAAATCTAACATATTGTATTTGATAAAGTTGATTTTGTTTCGAAAACTT-TGTATATTACAATGGAATATCGACATATCGTTGGG-TATATTTGCTTGT--GGCTCAGGGTTAGAT-TCAATATCACCAGCCTCCAGCAACAGCAAGAGTAACACTATCACAAA-gtatacacagataaactcacgcacactcacgcacactcacacatacggactcatatatacatacacgcaaacaccacattcgtgcttgtaaaacaaagtaaataaacatatgtgcagtaaggcaaacatataggcaaaacacaaaaacaaatattcgcgcgcgcacgcgcatgcacgcacgcatacactcgcacacatgcat
gi|4 : a------CAAATATTCGTTTAAATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTT-AATACTATTATTAAAATTGGTAAAACATTCTGCATCTGCAGTTTTGGGGCTAT-AAAACAATCCTGCAGACCTAG-CAGAA---TAAATGTATAT-A--TA--GTA------TTGAAT-TT------AATCCATACGGATTCATTGCA--AAATGTTTCGA-ATTC-A-AA-CA--------------------ATTTCTGGACATATATACAAGCAAG-------------------CCTACT----C--CGTGATGTGTACGATCTTTTCTGTAAG----C--AATGTCAAACTTGTCTGGC--A-GATGTAAA-AGACTA--AAAGGAGTT-T-GTTA----ATCAAG-ATAAGTTTCTG-AAA-A-ACAGCGAAT-ATCATAATCCAAAAAATTATTAATAACATATTCGAGCTTATTTCTTATACTTATA-ATGTTACAATTGAACGTTGATAAACTGT---GTTA-ATT-GTACGTT-TGTCTCGGATTACTT-TCAATATCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAACTCCTTTGTTGTC--AATAA--AATCatgaacattgttaaagcattatttcagtgtaacaaagtatttgta
gi|5 : ttaggattgtaAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTTACAGAGTTGCCCCAGAATCAATAATAAATACAGCATTGATATTGACGCCTTCATGTGAA--CTTTCCCGCTTCCTACCACTGTAAT--ACCACCATGAAATAGACCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGT------------AACAACAAAAAT---AAAATACTTAAGGCTACCATCGAAACTACCCCACTGTAAATATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAAC-AAAAACAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAActtt
gi|6 : aTTGAG------CAAATCTTCGTTTAAATCGCCTAGCAAAATAATGT-TGTTTTTTA--CTCACAATGCCTTTTCAATATTATTGTTAAATTTGGTAAAAAAATCTGCATCAGCAATTTTGGGGCTAT-AAAACAATTGT--------AA-TAGAA---TA------TTT-G--CC--A-A------TTTAGTGT---------------TTGGTTCGTTGCA--AGATA-ACCTA-ATTTAA-AA-CA-----TCTAGAATG----AAATGCCGAGACACATGAACGAGTAAG--------------------CCCCA----CTTCATGATTTG---------------AA-----C--AAT------CTT-TCTGAC--A-GATGTAAG-TGACTATCAGAAAGGTG---GTG-----ATCAAG-A-----ATCAG-AAA-T-GTGG----TGATCAAGAT----AAATTTCTGAAAAACATAGACA--CTTATTTCTTATACTTCTA-ATGTT--AATGAAATATTGATAAGCTGT---G-TA-AATTGTACGTT-GGTCCCGTTTTTTTTCTCAACATCTCCTGCTTGTAAAATAATGGGTAACAAAACAATCTTAAA-ATCT-T-TTTTGTCAATAA--AGTC
gi|7 : attaggaTGCATTAAATTCTTTGTTAAATATACCAAAATT-------------------TTCCCA----C--CATGATTTGTTCTGTCTTTGAGGTAAGGCT-C--A---TCAAACTTTTC--AGT-AAGTTTCAAT-AAATCACTAGAGACGTG-T-GT------ATATAA-GTGCGTTTCAGTAAA-TGATAA--CAT-ATCTAGATATAAAAAAT-GTCAATAATATAATCAATCTTATTTCTTATACTTCTG-ATATTACAAT-----------------------TC-ATT-----GCCAGGACCCAGGTTTGTT-TCAATGTCCTAACCCTCTTATAAAATCAGAAGTAAAACTAACATACA-TTCTATATTTGA--AACAA--ATTCAAGTAGT-ACTAAATGTA-ATTATCTTGGCATTT-ATATCAGCGTTACCCCAGAATCAGTGATAAATAGAGCAATGATACGGATGCCTTCATGTGAA--CTtttg
gi|8 : gaaagatactaataattattcatAAATACACATA-TGACGGCTCTACATGTACTTATATCACTACC---CA-CT---GGGTAACA------AGACTAGTAGAAATACCAAAATGTTA---GCCACCAgt
gi|9 : ttaattgtatttgaactattcctctttgaaacctgttcattaatagtataaacatgtttaaaaatgaagcaaaaatttagtttcaatcattttgtgtaccagaaatttacaagtgttAATATTCATTAGAATCATCAAGCAGCAATAAAT-TTTGAGAAA--GAGCATAAGCTCTCTCTTTAGTTTTATTTAGATTATTGAAAATTTCGG-ATCAGCAGTTTTTGGATTGT-AGAA---------------------AA---TA-TT---TCT-GAACC--T-T------TTTAACTTT------AATCCAAATTGATTCGTTGCA--GAATGTTTCTA-A----------A-----TC-AG---GT----AATTTTTGGCCAAAAAAACAAGC-AGCACCCCCCCCCCCCCCCCCCCCCCACCCTC--CATGATTGTTTCTGTCGTTTCGATATGG-T-T----CGTCAAATATATC--GCTGA-GATCCAAATGTAC-ATTATAAAT-TG-TAAC------ATCTAG-ATGGGTTTCAGTAAA-G-TTAG--GAT-ATCGAAGTCTttagcatagaacctctaccaaaaacattgctgggactacctaaggaaaataaagaggtaaaaaataaagtagcaaagaacgataagaggaatatacatgctgtttgcaaatattaagaatgagcttttgggttttcccaggatgaagactttaaacataaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTAATTGTATTTGATTTATTCCTCTTTGCGATCAGTTCATTACAAGTATAAATATATATATAACAAATGAAACGAAAATTTAGATTTAATCATTTTTTGTACCAGAAATTGACAGGTATTAAATAAAC
Unaligned ( gi|14 ): GTTTGCAAATATTATGAATGAGGTTTTTTTTTTAAAAATAAATAACTTTAACAAATGATAGAACCAACAATTTCTTATATGGACATTAAATATTGAGCTAGTTTGTTCATACACAC
Unaligned ( gi|17 ): ATCTTCATTTAGGTCGCCTAGCGGTATTATATTATTTGATTTTTCCAATGCCTTTGTTATATTTCTATTTAAGTT
Alignments
lowQualScore : 111111 555555555555555555555555555555555555555555555555555 222222222 4444444444444444444444444444444 4444444444444444444 1111 4444444444444 22222222 33333333333 222 111 11111 222222222 11 11 11 111 111 22222222 111 2 1 1
lowQualScore : 444444 0 1 1 1 1 1 4 1 5 1 66 22 22 1 1 11 0 1 1 77 5 1 000000000000000000000000000000000000000000000000000 111111111 0 3 1 1 77 1 1 6666666666666666666666666666666 1 1 1 1 1 1 4444444444444444444 2222 77 1 1 44 1 3 4444444444444 6 88888888 0 11 66 1 2 77 0 22 44444444444 5 5 3 8 333 111 5 0 1 1 444 2 6 1 2 1 1 22222 6 111111111 1 1 6 0 0 1 1 1 4 6 5 33 66 0 3 6 8 1 3 44 3 0 11 2 0 5 11 6 111 111 6 7 00000000 111 3 44 6 6 1 1 1 5 5 1 1 1 1
lowQualScore : ...... . . . . . . . . . . .. .. .. . . .. . . . .. . . ................................................... ......... . . . . .. . . ............................... . . . . . . ................... .... .. . . .. . . ............. . ........ . .. .. . . .. . .. ........... . . . . ... ... . . . . ... . . . . . . ..... . ......... . . . . . . . . . . . .. .. . . . . . . .. . . .. . . . .. . ... ... . . ........ ... . .. . . . . . . . . . . .
lowQualScore : 444444 7 0 9 0 3 0 4 0 3 0 11 99 77 0 0 22 5 0 0 66 7 7 111111111111111111111111111111111111111111111111111 333333333 4 0 0 7 99 7 0 0000000000000000000000000000000 9 0 6 0 0 7 3333333333333333333 1111 99 4 9 77 3 0 4444444444444 6 77777777 6 44 33 0 3 66 4 44 11111111111 4 7 0 7 999 444 7 7 0 0 777 5 7 7 5 8 5 55555 7 777777777 0 0 7 3 8 0 0 0 4 5 5 88 99 5 7 7 0 4 2 00 8 8 00 5 2 0 00 7 777 777 7 3 00000000 777 2 88 7 7 0 0 0 5 5 0 0 0 0
consensus : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGT-AAAACAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAATNTT------AACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-G-AA-CA-----TCTAGAATGNATTAAATTCCTNGACAAATANACNAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAGTAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-TA-ATTCGTACGTC-GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
Reference ( family-1690 ) : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGT-AAAACAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAATNTT------AACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-G-AA-CA-----TCTAGAATGNATTAAATTCCTNGACAAATANACNAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAGTAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-TA-ATTCGTACGTC-GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
gi|1 : GTTAAGATTGTACAAATCTTCGTTGAGATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTTTAATATTATTATTAAAATTGGTAAAAAATTCTGCTTCTGCAGGTCTGGGGCTAT-AAAACAATCCT--------AG-CAGAA----AATT---T---G--CA--T-A------TTTAGTATTGAATTTAACCCATATAGATTCGTTGCA--AAAAGTTTCTA-ATTC-A-AAACA-----TCTAGAATGAATTAAATTTCTGGACAAATGAACAAGCAAG-------------------CTCTCT----C--CATGATTTATACGATTTTTTCTGTAAG----C--AATGTCAAACTTGTCTGAC--A-GATGTAAA-ATACTATCAGGAATTTGCT-G-------GTC-AGTGTGCGTTTCTGAAAA-ACATAG--AAT-ATCATAATCCAAAAAATTATCAATAATATATTCTAACTTATTTCTTATACTTCTA-ATGTTACAATGGAATATTGATAAACTGT---G-TA-AATTGTACGTT-AGTCCTGGGTTTCTT-TCAACACCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAA-CTCT-TTTTTTGTCAACAA--AATCCTTTGAT-ATTAATTGTA
gi|1 : taTACCA--GTAATTTGCAAGTGTTAAATAAACCTA-TGGCGGCTCTCCATGTACTTATATC---ACTACGCA-TT---GGGTAAAA------AGACTAGTAGAAAT---Atttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgtaccagtaatttgcaagtgttaaataaacctatggcggctctccatgtacttatatcactacgcattgggtaaaaagactagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|10 : tagttaagattgtacaaatcttcgttgagatcgcctagcaaaataatattgtttgttacttccaatgcctttttaatattattattaaaattggtaaaaaattctgcttctgcaggtctggggctataaaacaatcctagcagaaaatttgcatatttagtattgaatttaacccatatagattcgttgcaaaaagtttctaattcaaaacatctagaatgaattaaatttctggacaaatgaacaagcaagctctctccatgatttatacgattttttctgtaagcaatgtcaaacttgtctgacagatgtaaaatactatcaggaatttgctggtcagtgtgcgtttctgaaaaacatagaatatcataatccaaaaaattatcaataatatattctaacttatttcttatacttctaatgttacaatggaatattgataaactgtgtaaattgtacgttagtcctgggtttctttcaacacctcctgcttgtaaaagaaggagtagtaaagcaatcttaaactctttttttgtcaacaaaatcctttgatattaattgtatttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgAGCTTCTAATAAAATCAGAAGTAGAATAAACATAAA-TT-TATTTTTTG--AACAA--ATTCACATAGT-ACTAAAAGTAGAATATGTTGGCATTT-GTAACAGA-----------ATCAATAATAACTAGAGCATTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGATCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------GCAACAACAAAAAT---TAAAGACTAAAGGCTTCCACCGATACTACCCCACTGT-AACAT-GATACCccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|11 : TTCAG------CAAATCTTCATTTCAATCTCCTAACAGAATTACATGTATT-GAGA--CTTCACAGGCTTGTTCTATATTTTTGTTAAAATTATCAAAAAGCTCTTTGTCAGCTGTTTCAGGGCTGT-AGAATAACCCT--------TG-TAAA-----AATT---TCT----CC--G-AAATTGTTTTGATGTG------GACCCAAATTGACTCTTCACA--AAATATTTCCA-AGTC-tc
gi|12 : gaAGCATGAACAGAAAATAAAGCAGTGGCAAGGTTACCG--GTGCAAAAGCTTTTCCG---AATACCAATGGGTT--GCAACCATGAAACAGCCCAAATACCAGCTCTCCATGTGCTTATTTT---ATA---TATTTTGGAAGTAACAAATTTGAAAAAAACAAA------AAAACA-TGGAGGCTGCCACca
gi|15 : ttTGTTAAA------CAAATCTTCAT-ACGATATCTAAGTAAAATTACAT-TCTTGGAAAGGC-----ATATGTTTTTGATATCATTGTTAAGGCTGTTAAATCGATCCGTTTCATCA-TCTTG
gi|16 : atAAAAAAATTACATA-TTCTATAT------AACAACTATCTACCTAATTACGAAATGAAGATTATGTCAATATGTAGTTGCAGGGTTGCTCCAGAt
gi|18 : gaTGTTAAG------CAAATCTTCATTAAGATCTCCAAGTAATGTTAAAT-TCTTGGAAA--TTGCCTAAGCTTTTT
gi|2 : tatTGTTAAG------CATATCTTCATTAAGATCTCCAAGTAAAATTAAAT-TCTTGGACA--TTTCTTAATCGTTTTCGATATTATTATTAAGGCTGTTAAAGAAGTCTGCATCAGCTGTTTTAGCGCTAT-AAAATACGCCT--------AA-CAGAA---TAACT---TCTTG--CCCCG-A------TTTAACCTT------AACCCAGATAGATTCATTGCA--AAATGTTTCAAGATTT-GGAA-C------CCTTGAATGAATTATATTCTTTGCTAAATATATCAAAATA-------------------CCCCAA----C--CATGATTTGTTCTGTCTTTGCGGTAAGG-TTC--A---TCAAATATATC--ACT-AAGTTTCAAT-AAATCACCAGAGACGTG-T-GT------ATTTAA-ATGCGTTTCAGTAAA-TGATAA--AAT-ATCAAAATCTAAAAGAGTGTCAAATATATAATCAATCTTATTTCTTGTACTTCTG-ATATTGCAATGAAAAAAGGACAAGCTAT---G-GG-ATTCAT-TGCCAGGACCCGGGTTTGCT-GCAATATCCCAAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTTTATATTTTG--AACAA--ATTCACAAAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTTCCCCAGAATCAATAATAAAT-------TGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGTAGCCCTCCTTGTACTTATATC---ATC---TA-TTTGGGAGTAACA------ACAACAACAAAAAT---AAAATACTTAAGGCTACCATCGATACTACCCCACTTTCAACATGGACACCAGTCTCGCACAGACCAAGACGACACATAGAAAAAAGTATTTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCATATAGTATATAAAATATGAAAATAGTAGTATCACATATGAGTCGGAGTGATTTCCGTTATCAAATGAAGCGAATATTACGTAAGCGTTATAATATTAAAATAAACTGAAACATATTTACCTAAGGAATTTATAGTGAACATTCACCCAAGAAAA
gi|3 : TTAAA------AAGATCTACATTTAGATCTCCAAATATCAGCACAT-TTTTAAAAA--CATCCAAGGCATTTTCTATATTCTTGTTAAAATTTACAAAAAAAAGAGAGTTGAAAGTTTTAGGGCTGTAAAAACAA--CC--------AGTCAGTACCTTTATT---TAT----TC--A-A------CTTGATCAC------AATCCATATCGACTCTTTACAGTAAA--TTTCAA------G-AA-CAGGTAGTCTTGTGTGTAGTATACTCTTCGACAAATAAACCAGTAAG-------------------CCTCCA----C--CGTGATTTGTTTGATTTTTTCTATA----T-CGGAA-GTCATATTTCTCTGAC--A-GGTTAAGA-ACATTTT------CGTT-T-ATAAGGTCATCTAA-ATGTGTTTCAGTAAAGC-ATAA--AAT-ATCAAAATCTAACATATTGTATTTGATAAAGTTGATTTTGTTTCGAAAACTT-TGTATATTACAATGGAATATCGACATATCGTTGGG-TATATTTGCTTGT--GGCTCAGGGTTAGAT-TCAATATCACCAGCCTCCAGCAACAGCAAGAGTAACACTATCACAAA-gtatacacagataaactcacgcacactcacgcacactcacacatacggactcatatatacatacacgcaaacaccacattcgtgcttgtaaaacaaagtaaataaacatatgtgcagtaaggcaaacatataggcaaaacacaaaaacaaatattcgcgcgcgcacgcgcatgcacgcacgcatacactcgcacacatgcat
gi|4 : a------CAAATATTCGTTTAAATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTT-AATACTATTATTAAAATTGGTAAAACATTCTGCATCTGCAGTTTTGGGGCTAT-AAAACAATCCTGCAGACCTAG-CAGAA---TAAATGTATAT-A--TA--GTA------TTGAAT-TT------AATCCATACGGATTCATTGCA--AAATGTTTCGA-ATTC-A-AA-CA--------------------ATTTCTGGACATATATACAAGCAAG-------------------CCTACT----C--CGTGATGTGTACGATCTTTTCTGTAAG----C--AATGTCAAACTTGTCTGGC--A-GATGTAAA-AGACTA--AAAGGAGTT-T-GTTA----ATCAAG-ATAAGTTTCTG-AAA-A-ACAGCGAAT-ATCATAATCCAAAAAATTATTAATAACATATTCGAGCTTATTTCTTATACTTATA-ATGTTACAATTGAACGTTGATAAACTGT---GTTA-ATT-GTACGTT-TGTCTCGGATTACTT-TCAATATCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAACTCCTTTGTTGTC--AATAA--AATCatgaacattgttaaagcattatttcagtgtaacaaagtatttgta
gi|5 : ttaggattgtaAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTTACAGAGTTGCCCCAGAATCAATAATAAATACAGCATTGATATTGACGCCTTCATGTGAA--CTTTCCCGCTTCCTACCACTGTAAT--ACCACCATGAAATAGACCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGT------------AACAACAAAAAT---AAAATACTTAAGGCTACCATCGAAACTACCCCACTGTAAATATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAAC-AAAAACAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAActtt
gi|6 : aTTGAG------CAAATCTTCGTTTAAATCGCCTAGCAAAATAATGT-TGTTTTTTA--CTCACAATGCCTTTTCAATATTATTGTTAAATTTGGTAAAAAAATCTGCATCAGCAATTTTGGGGCTAT-AAAACAATTGT--------AA-TAGAA---TA------TTT-G--CC--A-A------TTTAGTGT---------------TTGGTTCGTTGCA--AGATA-ACCTA-ATTTAA-AA-CA-----TCTAGAATG----AAATGCCGAGACACATGAACGAGTAAG--------------------CCCCA----CTTCATGATTTG---------------AA-----C--AAT------CTT-TCTGAC--A-GATGTAAG-TGACTATCAGAAAGGTG---GTG-----ATCAAG-A-----ATCAG-AAA-T-GTGG----TGATCAAGAT----AAATTTCTGAAAAACATAGACA--CTTATTTCTTATACTTCTA-ATGTT--AATGAAATATTGATAAGCTGT---G-TA-AATTGTACGTT-GGTCCCGTTTTTTTTCTCAACATCTCCTGCTTGTAAAATAATGGGTAACAAAACAATCTTAAA-ATCT-T-TTTTGTCAATAA--AGTC
gi|7 : attaggaTGCATTAAATTCTTTGTTAAATATACCAAAATT-------------------TTCCCA----C--CATGATTTGTTCTGTCTTTGAGGTAAGGCT-C--A---TCAAACTTTTC--AGT-AAGTTTCAAT-AAATCACTAGAGACGTG-T-GT------ATATAA-GTGCGTTTCAGTAAA-TGATAA--CAT-ATCTAGATATAAAAAAT-GTCAATAATATAATCAATCTTATTTCTTATACTTCTG-ATATTACAAT-----------------------TC-ATT-----GCCAGGACCCAGGTTTGTT-TCAATGTCCTAACCCTCTTATAAAATCAGAAGTAAAACTAACATACA-TTCTATATTTGA--AACAA--ATTCAAGTAGT-ACTAAATGTA-ATTATCTTGGCATTT-ATATCAGCGTTACCCCAGAATCAGTGATAAATAGAGCAATGATACGGATGCCTTCATGTGAA--CTtttg
gi|8 : gaaagatactaataattattcatAAATACACATA-TGACGGCTCTACATGTACTTATATCACTACC---CA-CT---GGGTAACA------AGACTAGTAGAAATACCAAAATGTTA---GCCACCAgt
gi|9 : ttaattgtatttgaactattcctctttgaaacctgttcattaatagtataaacatgtttaaaaatgaagcaaaaatttagtttcaatcattttgtgtaccagaaatttacaagtgttAATATTCATTAGAATCATCAAGCAGCAATAAAT-TTTGAGAAA--GAGCATAAGCTCTCTCTTTAGTTTTATTTAGATTATTGAAAATTTCGG-ATCAGCAGTTTTTGGATTGT-AGAA---------------------AA---TA-TT---TCT-GAACC--T-T------TTTAACTTT------AATCCAAATTGATTCGTTGCA--GAATGTTTCTA-A----------A-----TC-AG---GT----AATTTTTGGCCAAAAAAACAAGC-AGCACCCCCCCCCCCCCCCCCCCCCCACCCTC--CATGATTGTTTCTGTCGTTTCGATATGG-T-T----CGTCAAATATATC--GCTGA-GATCCAAATGTAC-ATTATAAAT-TG-TAAC------ATCTAG-ATGGGTTTCAGTAAA-G-TTAG--GAT-ATCGAAGTCTttagcatagaacctctaccaaaaacattgctgggactacctaaggaaaataaagaggtaaaaaataaagtagcaaagaacgataagaggaatatacatgctgtttgcaaatattaagaatgagcttttgggttttcccaggatgaagactttaaacataaa
blockSeqs : . T T T T C G A G G GG TT AC G T CT T C TG A T TCCTGCAGACCTAGCAGAATAAATGTATATATAGTA GTG A T T GT T C GATTTGGAACCCTTGAATGAATT T T C T C A CACCCCCCCCCCCCCCCCC CCCT TT A T TG G G AGGTTCA A ACTAA TC AT A C CC CG TATAAGGTC T . C T TG CGA G C A AAT C T G G A G TGGG T CATTGCCA A G C T A A C A T TC CT A T A T G AA G AG C C . A ACT . T T AATTTGAA ACC C GG C G G C A . . T A A G
blockSeqs : . A T A T C . C G A . TG CT T G TG T A TT . T CCCTTGTAAAAATTTCTCCGAAATTGT CTT G A A . T A GAACAGGTAGTCTTGTGTGTAGT T C A A C T . . . G T GA T T TCGGAAG C TGACA TA T C T TC CG TGTTA T . T T GC A . A G GAT A . A G T C GT . TGTACGTT C G . T A T . A A . . C . . A T AC T . C A . . . . . T GC . C TA A G
blockSeqs : . A T A T A . C G A . TT TT A T CG T G CA . C GCCTAACAGAATAACTTCTTGCCCCGA CAC T C T . T A ATTTAAAACATCTAGAATG A G A T A C . . . G A GA T T AGCAATG G TGGCA GT A G T CT AG TAAC A . A T TG A . T T GAG C . A T C T G . TGCTTGT T C . C G A . A A . . A . . T G AG A . . C . . . . . T AC . T TA
blockSeqs : . A T A T A . C A C . AT CA A G CT A A AG . C CCAGTCAGTACCTTTATTTATTCAA TTT T G A . T G ATTCAAACA A A A A G T . . . A T TG G G AGGCTCA T TGACA GT A G T TT GG TGT A . C T A C . G G AAT C . A G T T G . GTACGTT T T . A T T . T G . . G . . A A . . . C . . . . . T AG . . A
blockSeqs : . T T A C C . T T A . TT CA G A CA G T CA . C TTGTAATAGAATATTTGCCAA TT A T G . T T AATCAGGT A T T T C A . . . A T TG T G TGGTTCG A AGTAA TC G A C T CG GTG T . G . T G . C A A . . . . . . . . GCCA A G . T A T . A A . . G . . . . . . . .
blockSeqs : . T G T A T . G T T . TC CA T C CT G A CA . . AATATTTCTGAACCTT GT . T G . . T . G C A A C . . . A . . . . ACAAT . GCTGA CC T T . . T TGT T . . . G . . A T A . A A . .
blockSeqs : . T G T A T . G A T . AG AT T C A T T A T A T . . . . .
blockSeqs : A A A T A . T . A . . . A T A .
blockSeqCons : ****** CTT****** GCGCGTT** ** ** ***
originalCons : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGT-AAAACAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAATNTT------AACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-G-AA-CA-----TCTAGAATGNATTAAATTCCTNGACAAATANACNAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAGTAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-TA-ATTCGTACGTC-GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
finalCons : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGT-AAAACAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAATCTT------AACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-G-AA-CA-----TCTAGAATGNATTAAATTCCTNGACAAATANACNAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAGTAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-TA-ATTGCGCGTT--GGNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTAATTGTATTTGATTTATTCCTCTTTGCGATCAGTTCATTACAAGTATAAATATATATATAACAAATGAAACGAAAATTTAGATTTAATCATTTTTTGTACCAGAAATTGACAGGTATTAAATAAAC
Unaligned ( gi|14 ): GTTTGCAAATATTATGAATGAGGTTTTTTTTTTAAAAATAAATAACTTTAACAAATGATAGAACCAACAATTTCTTATATGGACATTAAATATTGAGCTAGTTTGTTCATACACAC
Unaligned ( gi|17 ): ATCTTCATTTAGGTCGCCTAGCGGTATTATATTATTTGATTTTTCCAATGCCTTTGTTATATTTCTATTTAAGTT
Alignments
lowQualScore : 111111 5555555555555555555555555555555555555555555555555 2222222 444444444444444444444444444444 4444444444444444444 1111 4444444444444 22222222 33333333333 11 111 111 222222222 11111111111 11 11 11 111 111 22222222 111 2 1 1
lowQualScore : 444444 0 1 1 1 1 1 4 1 5 1 66 22 22 1 1 11 0 1 1 77 77 2 2222222222222222222222222222222222222222222222222 5555555 3 0 3 1 1 77 33 1 555555555555555555555555555555 1 1 1 1 1 1 4444444444444444444 2222 77 1 1 44 1 3 4444444444444 6 88888888 0 11 66 1 2 77 0 22 44444444444 5 5 3 44 888 111 5 0 1 1 444 2 6 1 2 1 1 555555555 6 88888888888 1 1 6 0 0 1 1 1 4 6 5 33 66 0 3 6 8 1 3 44 3 0 11 2 0 5 11 6 111 111 6 7 00000000 111 3 44 6 6 1 1 1 5 5 1 1 1 1
lowQualScore : ...... . . . . . . . . . . .. .. .. . . .. . . . .. .. . ................................................. ....... . . . . . .. .. . .............................. . . . . . . ................... .... .. . . .. . . ............. . ........ . .. .. . . .. . .. ........... . . . .. ... ... . . . . ... . . . . . . ......... . ........... . . . . . . . . . . . .. .. . . . . . . .. . . .. . . . .. . ... ... . . ........ ... . .. . . . . . . . . . . .
lowQualScore : 444444 7 0 9 0 3 0 4 0 3 0 11 99 77 0 0 22 5 0 0 66 44 1 1111111111111111111111111111111111111111111111111 3333333 6 4 0 0 7 99 11 0 111111111111111111111111111111 9 0 6 0 0 7 3333333333333333333 1111 99 4 9 77 3 0 4444444444444 6 77777777 6 44 33 0 3 66 4 44 11111111111 4 7 0 44 111 444 7 7 0 0 777 5 7 7 5 8 5 000000000 7 22222222222 0 0 7 3 8 0 0 0 4 5 5 88 99 5 7 7 0 4 2 00 8 8 00 5 2 0 00 7 777 777 7 3 00000000 777 2 88 7 7 0 0 0 5 5 0 0 0 0
consensus : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGTAAAA-CAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAAT------NTTAACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-G-AACA-----TCTAGAATGNATTAAATTCCTNGACAAATANACNAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAG-TAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-T-A-A-TTGTACGTTG----GNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
Reference ( family-1690 ) : TGTTAAG------CAAATCTTCGTTNAGATCTCCNAGCAAAATTANAT-TNTTNGANA--CTTCCNANGCNTTTTCNATATTATTGTTAAAATTGNTAAAAAANTCTGCGTCAGCAGTTTTGGGGCTGTAAAA-CAATCCT--------AG-CAGAA---TAATT---TCT-G--CC--G-A------TTTAAT------CTTAACCCANATNGATTCGTTGCA--AAATGTTTCNA-ATTC-G-AACA-----TCTAGAATGNATTAAATTCCTNGACAAATANACNAGCAAG-------------------CCCCCA----C--CGTGATTTGTTCGGTCTTTTCNGTAAGG-T-C--AATGTCAAACTTNTCTGACT-A-GATNCAAA-ANACTATCAGAGACGTG-T-GT------ATCTAG-ATGCGTTTCAG-TAAA-N-ATAG--AAT-ATCAAAATCTAAAAAATTGTCAATAATATANTCGATCTTATTTCTTATACTTCTG-ATGTTACAATGGAATATTGATAAACTGT---G-T-A-A-TTGCGCGTTG----GNCCCGGGTTTNTT-TCAATATCTCCAGCTTCTAANAAAATCAGNAGTAAAACAANCATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTGCCCCAGAATCAATAATAAATAGAGCANTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGCAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------ANAACAACAAAAAT---AAAATACTNAAGGCTACCACCGATACTACCCCACTGT-AACATGGACACCAGNCTCGCACANACCAAGACGACACATAGAAAAAAGTATNTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCACATAGTATATAAAATGTGAGAATAGTAGTATCACATATGAGTCGGAGCGATTTCCGTTNTCAAATGAAGCGAATATTACGTAAGCGTTATAACATCAAAATAAACTGAAACANATTTACNCAAGGAATTTATAGTGAACATTCACCNAAGAAAA
gi|1 : GTTAAGATTGTACAAATCTTCGTTGAGATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTTTAATATTATTATTAAAATTGGTAAAAAATTCTGCTTCTGCAGGTCTGGGGCTATAAAA-CAATCCT--------AG-CAGAA----AATT-----T-G--CA--T-A------TTTAGTATTGAATTTAACCCATATAGATTCGTTGCA--AAAAGTTTCTA-ATTCAA-AACA-----TCTAGAATGAATTAAATTTCTGGACAAATGAACAAGCAAG-------------------CTCTCT----C--CATGATTTATACGATTTTTTCTGTAAG----C--AATGTCAAACTTGTCTGAC--A-GATGTAAA-ATACTATCAGGAATTTGCT-G-------GTC-AGTGTGCGTTTCTGAAAAA-C-ATAG--AAT-ATCATAATCCAAAAAATTATCAATAATATATTCTAACTTATTTCTTATACTTCTA-ATGTTACAATGGAATATTGATAAACTGT---G-TAA-A-TTGTACGTTA----GTCCTGGGTTTCTT-TCAACACCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAA-CTCT-TTTTTTGTCAACAA--AATCCTTTGAT-ATTAATTGTA
gi|1 : taTACCA--GTAATTTGCAAGTGTTAAATAAACCTA-TGGCGGCTCTCCATGTACTTATATC---ACTACGCA-TT---GGGTAAAA------AGACTAGTAGAAAT---Atttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgtaccagtaatttgcaagtgttaaataaacctatggcggctctccatgtacttatatcactacgcattgggtaaaaagactagtagaaataccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|10 : tagttaagattgtacaaatcttcgttgagatcgcctagcaaaataatattgtttgttacttccaatgcctttttaatattattattaaaattggtaaaaaattctgcttctgcaggtctggggctataaaacaatcctagcagaaaatttgcatatttagtattgaatttaacccatatagattcgttgcaaaaagtttctaattcaaaacatctagaatgaattaaatttctggacaaatgaacaagcaagctctctccatgatttatacgattttttctgtaagcaatgtcaaacttgtctgacagatgtaaaatactatcaggaatttgctggtcagtgtgcgtttctgaaaaacatagaatatcataatccaaaaaattatcaataatatattctaacttatttcttatacttctaatgttacaatggaatattgataaactgtgtaaattgtacgttagtcctgggtttctttcaacacctcctgcttgtaaaagaaggagtagtaaagcaatcttaaactctttttttgtcaacaaaatcctttgatattaattgtatttgaactattactctttgcgaccagtacattaataatataaacatgtataaaagatgaagcgaaaatttagttttaatcattttgtgAGCTTCTAATAAAATCAGAAGTAGAATAAACATAAA-TT-TATTTTTTG--AACAA--ATTCACATAGT-ACTAAAAGTAGAATATGTTGGCATTT-GTAACAGA-----------ATCAATAATAACTAGAGCATTGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGATCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGTAACA------GCAACAACAAAAAT---TAAAGACTAAAGGCTTCCACCGATACTACCCCACTGT-AACAT-GATACCccgagatgtgagccgccattagcacagaacctctaccaaaaacatttctgggagtacctaaggatagaaaagaggtaaaaataaagtagcagagaaatagaagaagaataaacatgctgtttgcaaatattatgaatgaggtttgggtttttccccaggatgaagactttaaacataaatagtatgatgtctttaacaaatgatagaaccatatatcgacattagatgttaagttagtttgttcatacatacgcgtacgacgtacgcacgcacacacactcgcacgctcacacacacacaacacacgccatctctctctctctctctctcgagcacactaacaaccatttgtgtatacagaaatacaaacacgaataaaacactgagtatcatacacacaaaataaaaaacactaaaacacgcacacacatgaaggaaaaaaacaaacacgcatgcacgcacgcgcactctgtccgtacacacacata
gi|11 : TTCAG------CAAATCTTCATTTCAATCTCCTAACAGAATTACATGTATT-GAGA--CTTCACAGGCTTGTTCTATATTTTTGTTAAAATTATCAAAAAGCTCTTTGTCAGCTGTTTCAGGGCTGTAGAA-TAACCCT--------TG-TAAA-----AATT---TCT----CC--G-AAATTGTTTTGAT------GTGGACCCAAATTGACTCTTCACA--AAATATTTCCA-AGTC-tc
gi|12 : gaAGCATGAACAGAAAATAAAGCAGTGGCAAGGTTACCG--GTGCAAAAGCTTTTCCG---AATACCAATGGGTT--GCAACCATGAAACAGCCCAAATACCAGCTCTCCATGTGCTTATTTT---ATA---TATTTTGGAAGTAACAAATTTGAAAAAAACAAA------AAAACA-TGGAGGCTGCCACca
gi|15 : ttTGTTAAA------CAAATCTTCAT-ACGATATCTAAGTAAAATTACAT-TCTTGGAAAGGC-----ATATGTTTTTGATATCATTGTTAAGGCTGTTAAATCGATCCGTTTCATCA-TCTTG
gi|16 : atAAAAAAATTACATA-TTCTATAT------AACAACTATCTACCTAATTACGAAATGAAGATTATGTCAATATGTAGTTGCAGGGTTGCTCCAGAt
gi|18 : gaTGTTAAG------CAAATCTTCATTAAGATCTCCAAGTAATGTTAAAT-TCTTGGAAA--TTGCCTAAGCTTTTT
gi|2 : tatTGTTAAG------CATATCTTCATTAAGATCTCCAAGTAAAATTAAAT-TCTTGGACA--TTTCTTAATCGTTTTCGATATTATTATTAAGGCTGTTAAAGAAGTCTGCATCAGCTGTTTTAGCGCTATAAAA-TACGCCT--------AA-CAGAA---TAACT---TCTTG--CCCCG-A------TTTAAC------CTTAACCCAGATAGATTCATTGCA--AAATGTTTCAAGATTT-GGAAC------CCTTGAATGAATTATATTCTTTGCTAAATATATCAAAATA-------------------CCCCAA----C--CATGATTTGTTCTGTCTTTGCGGTAAGG-TTC--A---TCAAATATATC--ACT-AAGTTTCAAT-AAATCACCAGAGACGTG-T-GT------ATTTAA-ATGCGTTTCAG-TAAA-TGATAA--AAT-ATCAAAATCTAAAAGAGTGTCAAATATATAATCAATCTTATTTCTTGTACTTCTG-ATATTGCAATGAAAAAAGGACAAGCTAT---G-G-G-A-TT---CATTGCCAGGACCCGGGTTTGCT-GCAATATCCCAAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTTTATATTTTG--AACAA--ATTCACAAAGT-ACTAAATGTAGATTATGTTGGCATTT-GTAACAGAGTTTCCCCAGAATCAATAATAAAT-------TGATATGGATGCCTTCATGTGAA--CTTTTCCGCTTGCTACCACTGTAAT--GCCACCATGAAATAGACCAA-TAGTAGCCCTCCTTGTACTTATATC---ATC---TA-TTTGGGAGTAACA------ACAACAACAAAAAT---AAAATACTTAAGGCTACCATCGATACTACCCCACTTTCAACATGGACACCAGTCTCGCACAGACCAAGACGACACATAGAAAAAAGTATTTGAGCAAAGAGAAGAGCAAAATAACAAAAAACAAATAAATAGCATATAGTATATAAAATATGAAAATAGTAGTATCACATATGAGTCGGAGTGATTTCCGTTATCAAATGAAGCGAATATTACGTAAGCGTTATAATATTAAAATAAACTGAAACATATTTACCTAAGGAATTTATAGTGAACATTCACCCAAGAAAA
gi|3 : TTAAA------AAGATCTACATTTAGATCTCCAAATATCAGCACAT-TTTTAAAAA--CATCCAAGGCATTTTCTATATTCTTGTTAAAATTTACAAAAAAAAGAGAGTTGAAAGTTTTAGGGCTGTAAAAACAACC----------AGTCAGTACCTTTATT---TAT----TC--A-A------CTTGAT------CACAATCCATATCGACTCTTTACAGTAAAT--TTCAA------G-AACAGGTAGTCTTGTGTGTAGTATACTCTTCGACAAATAAACCAGTAAG-------------------CCTCCA----C--CGTGATTTGTTTGATTTTTTCTATA----T-CGGAA-GTCATATTTCTCTGAC--A-GGTTAAGA-ACATTTT------CGTT-T-ATAAGGTCATCTAA-ATGTGTTTCAG-TAAAGC-ATAA--AAT-ATCAAAATCTAACATATTGTATTTGATAAAGTTGATTTTGTTTCGAAAACTT-TGTATATTACAATGGAATATCGACATATCGTTGGG-T-ATATTTGCTTG-TG----GCTCAGGGTTAGAT-TCAATATCACCAGCCTCCAGCAACAGCAAGAGTAACACTATCACAAA-gtatacacagataaactcacgcacactcacgcacactcacacatacggactcatatatacatacacgcaaacaccacattcgtgcttgtaaaacaaagtaaataaacatatgtgcagtaaggcaaacatataggcaaaacacaaaaacaaatattcgcgcgcgcacgcgcatgcacgcacgcatacactcgcacacatgcat
gi|4 : a------CAAATATTCGTTTAAATCGCCTAGCAAAATAATAT-TGTTTGTTA--CTTCCAATGCCTTTT-AATACTATTATTAAAATTGGTAAAACATTCTGCATCTGCAGTTTTGGGGCTATAAAA-CAATCCTGCAGACCTAG-CAGAA---TAAATGTATAT-A--TA--GTA------TTGAAT-------TTAATCCATACGGATTCATTGCA--AAATGTTTCGA-ATTC-A-AACA--------------------ATTTCTGGACATATATACAAGCAAG-------------------CCTACT----C--CGTGATGTGTACGATCTTTTCTGTAAG----C--AATGTCAAACTTGTCTGGC--A-GATGTAAA-AGACTA--AAAGGAGTT-T-GTTA----ATCAAG-ATAAGTTTCTG--AAA-A-ACAGCGAAT-ATCATAATCCAAAAAATTATTAATAACATATTCGAGCTTATTTCTTATACTTATA-ATGTTACAATTGAACGTTGATAAACTGT---GTT-A-A-TTGTACGTTT----GTCTCGGATTACTT-TCAATATCTCCTGCTTGTAAAAGAAGGAGTAGTAAAGCAATCTTAAACTCCTTTGTTGTC--AATAA--AATCatgaacattgttaaagcattatttcagtgtaacaaagtatttgta
gi|5 : ttaggattgtaAGCTTCTAATAAAATCAGAAGTAAAATAAACATAAA-TTCTATATTTTG--AACAA--ATTCACGTAGT-ACTAAATGTAGATTATGTTGGCATTT-GTTACAGAGTTGCCCCAGAATCAATAATAAATACAGCATTGATATTGACGCCTTCATGTGAA--CTTTCCCGCTTCCTACCACTGTAAT--ACCACCATGAAATAGACCAA-TAGTAGCCCTCCATGTACTTATATC---ATC---CA-TTTGGGAGT------------AACAACAAAAAT---AAAATACTTAAGGCTACCATCGAAACTACCCCACTGTAAATATGGACACCAGGCTCGCACACACCAAGACGACACATAGAAAAAAGTATATGAGCAAAGAGAAGAGCAAAATAAC-AAAAACAAATAAATAGCACA-AGTATATAAAATGTGAGAATAGTAGTATCATATATGAGTCAGAGCAATTTCCGTTTTCAAATGAAGCGAATATTACGTAAGCATTATAACATCAAAATAAACTGAAACAAATTTACACAAGGAATTTATAGTGAACATTCACCGAAGAAAActtt
gi|6 : aTTGAG------CAAATCTTCGTTTAAATCGCCTAGCAAAATAATGT-TGTTTTTTA--CTCACAATGCCTTTTCAATATTATTGTTAAATTTGGTAAAAAAATCTGCATCAGCAATTTTGGGGCTATAAAA-CAATTGT--------AA-TAGAA---TA------TTT-G--CC--A-A------TTTAGT------GT---------TTGGTTCGTTGCA--AGATA-ACCTA-ATTTAA-AACA-----TCTAGAATG----AAATGCCGAGACACATGAACGAGTAAG--------------------CCCCA----CTTCATGATTTG---------------AA-----C--AAT------CTT-TCTGAC--A-GATGTAAG-TGACTATCAGAAAGGTG---GTG-----ATCAAG-A-----ATCAG--AAA-T-GTGG----TGATCAAGAT----AAATTTCTGAAAAACATAGACA--CTTATTTCTTATACTTCTA-ATGTT--AATGAAATATTGATAAGCTGT---G-TAA-A-TTGTACGTTG----GTCCCGTTTTTTTTCTCAACATCTCCTGCTTGTAAAATAATGGGTAACAAAACAATCTTAAA-ATCT-T-TTTTGTCAATAA--AGTC
gi|7 : attaggaTGCATTAAATTCTTTGTTAAATATACCAAAATT-------------------TTCCCA----C--CATGATTTGTTCTGTCTTTGAGGTAAGGCT-C--A---TCAAACTTTTC--AGT-AAGTTTCAAT-AAATCACTAGAGACGTG-T-GT------ATATAA-GTGCGTTTCAG-TAAA-TGATAA--CAT-ATCTAGATATAAAAAAT-GTCAATAATATAATCAATCTTATTTCTTATACTTCTG-ATATTACAAT-----------------------T-C-A-TTGC-CA--G----GACCCAGGTTTGTT-TCAATGTCCTAACCCTCTTATAAAATCAGAAGTAAAACTAACATACA-TTCTATATTTGA--AACAA--ATTCAAGTAGT-ACTAAATGTA-ATTATCTTGGCATTT-ATATCAGCGTTACCCCAGAATCAGTGATAAATAGAGCAATGATACGGATGCCTTCATGTGAA--CTtttg
gi|8 : gaaagatactaataattattcatAAATACACATA-TGACGGCTCTACATGTACTTATATCACTACC---CA-CT---GGGTAACA------AGACTAGTAGAAATACCAAAATGTTA---GCCACCAgt
gi|9 : ttaattgtatttgaactattcctctttgaaacctgttcattaatagtataaacatgtttaaaaatgaagcaaaaatttagtttcaatcattttgtgtaccagaaatttacaagtgttAATATTCATTAGAATCATCAAGCAGCAATAAAT-TTTGAGAAA--GAGCATAAGCTCTCTCTTTAGTTTTATTTAGATTATTGAAAATTTCGG-ATCAGCAGTTTTTGGATTGTAGAA----------------------AA---TA-TT---TCT-GAACC--T-T------TTTAAC------TTTAATCCAAATTGATTCGTTGCA--GAATGTTTCTA-A---------A-----TC-AG---GT----AATTTTTGGCCAAAAAAACAAGC-AGCACCCCCCCCCCCCCCCCCCCCCCACCCTC--CATGATTGTTTCTGTCGTTTCGATATGG-T-T----CGTCAAATATATC--GCTGA-GATCCAAATGTAC-ATTATAAAT-TG-TAAC------ATCTAG-ATGGGTTTCAG-TAAA-G-TTAG--GAT-ATCGAAGTCTttagcatagaacctctaccaaaaacattgctgggactacctaaggaaaataaagaggtaaaaaataaagtagcaaagaacgataagaggaatatacatgctgtttgcaaatattaagaatgagcttttgggttttcccaggatgaagactttaaacataaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTAATTGTATTTGATTTATTCCTCTTTGCGATCAGTTCATTACAAGTATAAATATATATATAACAAATGAAACGAAAATTTAGATTTAATCATTTTTTGTACCAGAAATTGACAGGTATTAAATAAAC
Unaligned ( gi|14 ): GTTTGCAAATATTATGAATGAGGTTTTTTTTTTAAAAATAAATAACTTTAACAAATGATAGAACCAACAATTTCTTATATGGACATTAAATATTGAGCTAGTTTGTTCATACACAC
Unaligned ( gi|17 ): ATCTTCATTTAGGTCGCCTAGCGGTATTATATTATTTGATTTTTCCAATGCCTTTGTTATATTTCTATTTAAGTT