lowQualScore : 1111111 222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111
lowQualScore : 11 1 777 4 3333333 4 444444 777 1 1 1 888888888888888888888888888888888888888888888888888888888888888888888888888 1 333333 1 3333 3333333 1 2 1 55555 4444444444444444444444 1 1 22 22 33333333 1 11 555555 1 1 999999999999999 1111 33
lowQualScore : 22 5 6 000 0 0000000 0 6 333333 000 6 5 5 6 6 5 444444444444444444444444444444444444444444444444444444444444444444444444444 5 000000 7 6 1111 66 4 2222222 5 0 5 66 4 6 00000 6666666666666666666666 5 66 4 5 33 11 6 3 2 55555555 6 2 7 22 888888 3 6 1 0 111111111111111 8 7777 88 6
lowQualScore : .. . . ... . ....... . . ...... ... . . . . . . ........................................................................... . ...... . . .... .. . ....... . . . .. . . ..... ...................... . .. . . .. .. . . . ........ . . . .. ...... . . . . ............... . .... .. .
lowQualScore : 00 0 0 000 0 0000000 0 0 000000 000 0 0 0 0 0 5 555555555555555555555555555555555555555555555555555555555555555555555555555 0 000000 0 0 0000 55 0 5555555 0 0 0 55 0 0 00000 0000000000000000000000 5 55 0 0 00 00 0 0 5 00000000 0 5 0 00 000000 0 0 5 5 555555555555555 2 0000 00 0
consensus : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTANGTTTTGGTGTTTGC-----CTC-TT--ATCTCAAT----CTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTNNCGTTTANNTGCGTTNAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTNTAGACACCCAGGTTAAACTTTTGCGTTTANNTGCGTTNAAGTTTTGGTGTTTGCCTCTTATCT---CAATCTTTGCATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTANNTGCGTTNAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTNATCCCATCGGCAAGCTTTGTTGTCTTCTGACAGCTNTTGTTAATNNNNNNNNNNNNNNNNNNNNNNGAGTTTCACCAA-CATTNACTNAGCTNAGTACT--AAATA-----AAAACTTAAAACATGCAGAAATGTA----TACTGATTTTAAGTAAAAC
Reference ( gi|1 ) : TTTTGATGCTCAATTTCATTTTAG---ATAATAATATATAAT-------AGAATC-AAATAAATATATGATTATTTTTATTAGCTCGCCGAGACGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAA----GTTTCAGTT---ATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTG------TTTA--CCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACT-TAGACACCCAGGTTTAGCTTTGG-ATTTAGTTGCGTTTAAGTTAAAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATTTCTTTTGGCACAGTTATGGCCGTTTTTGGGCTA-AGACACCCAGCTTAAAC-TTTGAGTTTAGTTGCGTTTAAAT-----TGTTTGA----TATCTATGCAACCACT-CATTGGATGTGAATGAACATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTTGCATTTTGGCACAGTAATGGCCCTTTTTTACTTAATTTTTCAGGTTAAAGTTTTTTATCACGTAAGATATCTATGCAACCACTAATTGGATATGAATGAAACTTCGTATGTGTGTTCAACATCATCATTGAAACACACAGAGATAAGAACCATAACTCTGGGTTGCCTTTTGACATAGTATGGCCCTTTAAGACTTAATTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTCCCTCCAATCTCACCCTTTGCATTGGTGGTGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGATAACTCTTGTAAATTGATCTTTAAAATTCTTTTATCGAACTTC-TCAATCATTAATTAAGCTCAGT-CTACAAATA-----AAAACTTAAAATATGCAGAAATGTA----TACTGA--TTAAGCAAAAC
gi|4 : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATC
gi|3 : tagcaactaacttTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGC-----CTC-TT--ATCTCAAT----CTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAA
gi|16 : ttttTAGACACCCAGGTTAAAC-TTTGCGTTTA------TTTACGTT---Agctttgttgtcttctgacaactcttgttaatatt
gi|3 : ctTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTaagtt
gi|16 : CT-TAGACACCCAGGTTAAACTTTGC-GTTTATTTACGTTAAAGTTttggtgtttgcctcttatctcaatctttgcattggtggcgagttttatcccatcagcaagctttgttgtcttctgacaactcttgttaatatt
gi|3 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGCCTCTTATCT---CAATCTTTGCATTGG
gi|16 : CTT-AGACACCCAGGTTAAAC-TTTGCGTTTATTTACGTTAAAGT-----Ttggcgagttttatcccatcagcaagctttgttgtcttctgacaactcttgttaatatt
gi|3 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAAT
gi|16 : TAGACACCCAGGTTAAAC-TTTGCGTTTATTTACGTTAAAGTTatt
gi|12 : ctCTTTGCATTGGTGACGAGTTTGATTCTATAGGCAA--------GTCTTCTGACAGCTGTT
gi|2 : tGAGTTTCACCAA-CATTAACTGAGCTTAGTACT-----TA-----AAAACTTAAAACATGCAGAAATGTA----CACTGAT-TTAAGTAAAACaata
gi|8 : CATTCACTTAGCTAAGT-----AAATATTAAAAAAACTTAAAGAATGCAGAAATGTATGTGTACTAAT-TTAAGTAAagttttaaatgcttacataaagatacatttgaagcatttttgtatcaacttgtttttgtaaatgttgctgaaacccgacc
gi|7 : atcaagtttcactgaTA-----AAAACTTAAAGCATGCAGAAACGTA----TACTGATTTTAAGTATAA
gi|9 : tgtcgccaacataaacttgactaaggagatattTA-----AACATTTAAAACATGTAGAAATTTA----TACTGATTTTAAGTAAAAtaaacttaaa
gi|11 : gtcgagtttggccggcattaaaataaatactTA-----AAATCTTAAAACATGCATAAATGTA----TACCAA--TTtaaactaa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TTGTGTGTCACCAACATTAACTGAGCAAAGTAAGTACAAGTTTATAGACATGCACAATTGTATATTTATTTAGGTTAACAAATTTATATTGTTATA
Unaligned ( gi|6 ): TAAACTTCATCATTTGCTCAACTGAGTTAATACTTAAAACGTATTATTGTTAAAATGCATACTGATTTAAGTAGACATTAAATTAAATGTCTACA
Unaligned ( gi|10 ): TGAGTTTCTCCCATATTAACTTAGCTAAGTAATTACTTAAACACCCGTAAAACATGTGGAAAAAATTGACTTAAGCAAAACA
Unaligned ( gi|13 ): AGGGGCAAGTTTCAATTCAGCTAACTTTCGTTGTACCTGTAAATGTTAAAAAAAC
Unaligned ( gi|14 ): GAGTTTCACCAACATTTACTCAGCTAAAAATTAAATCCTGCAGAAATGTATACT
Unaligned ( gi|15 ): TAGTTTCACTAATATTCACTTAGCTGAGTAAATGCAAAAAACTTTAAGTGCA
Alignments
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111
lowQualScore : 222 2 3333333 1 2 333 33333333333333333333333333333333333333 333333333333333333333333333333333333333333333333333333333333333333333333333 1 66666666666666666666666666666666666666666666666666666666666666666666666 1 4444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 11 4 666666666666666666666666666666666 11 2222222222222222222222 6666666666666666666666 111111 1
lowQualScore : 3 000 0 3333333 5 0 2 3 555 3 2 88888888888888888888888888888888888888 888888888888888888888888888888888888888888888888888888888888888888888888888 5 55555555555555555555555555555555555555555555555555555555555555555555555 7 6 8888 22 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 000 66 2 0 2 22 1 555555555555555555555555555555555 22 1 2 4 3 1 6 0 33 2222222222222222222222 4 3 1 1 4 0000000000000000000000 55 3 0 000000 8888 8
lowQualScore : . ... . ....... . . . . ... . . ...................................... ........................................................................... . ....................................................................... . . .... .. . ............................................................................................................................ ... .. . . . .. . ................................. .. . . . . . . . .. ...................... . . . . . ...................... .. . . ...... .... .
lowQualScore : 0 555 0 0000000 5 0 5 0 000 0 5 00000000000000000000000000000000000000 000000000000000000000000000000000000000000000000000000000000000000000000000 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 0 0000 00 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 55 5 0 5 00 0 555555555555555555555555555555555 00 0 5 0 0 0 7 7 00 0000000000000000000000 1 6 0 0 5 8888888888888888888888 00 6 5 555555 5555 2
consensus : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAA----GTTTCAGTT---ATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTG------TTTA--CCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACT-TAGACACCCAGGTTTAGCTTTGG-ATTTAGTTGCGTTTAAGTTAAAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATTTCTTTTGGCACAGTTATGGCCGTTTTTGGGCTATAGACACCCAGNTTAAAC-TTTGNGTTTANTTGCGTTNAAGTT----TGTTTGA----TATCTATGCAACCACT-CATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAA-CATTAACTNAGCTAAG----T-A----CT--AA-T---AAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
Reference ( family-1673 ) : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTANGTTTTGGTGTTTGC-----CTC-TT--ATCTCAAT----CTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTNNCGTTTANNTGCGTTNAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTNTAGACACCCAGGTTAAACTTTTGCGTTTANNTGCGTTNAAGTTTTGGTGTTTGCCTCTTATCT---CAATCTTTGCATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTANNTGCGTTNAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTNATCCCATCGGCAAGCTTTGTTGTCTTCTGACAGCTNTTGTTAATNNNNNNNNNNNNNNNNNNNNNNGAGTTTCACCAA-CATTNACTNAGCTNAG----T-A----CT--AAAT---AAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
gi|1 : TTTTGATGCTCAATTTCATTTTAG---ATAATAATATATAAT-------AGAATC-AAATAAATATATGATTATTTTTATTAGCTCGCCGAGACGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAA----GTTTCAGTT---ATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTG------TTTA--CCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACT-TAGACACCCAGGTTTAGCTTTGG-ATTTAGTTGCGTTTAAGTTAAAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATTTCTTTTGGCACAGTTATGGCCGTTTTTGGGCTA-AGACACCCAGCTTAAAC-TTTGAGTTTAGTTGCGTTTAAAT-----TGTTTGA----TATCTATGCAACCACT-CATTGG
gi|1 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTCCCTCCAATCTCACCCTTTGCATTGGTGGTGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGATAACTCTTGTAAATTGATCTTTAAAATTCTTTTATCGAACTTC-TCAATCATTAATTAAGCTCAG----T------CTACAAAT---AAAAACT--TA-AAATAT------GCAGAAATGTA----TACTGA--TTAAGCAAAACatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|10 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaagacacccagcttaaactttgagtttagttgcgtttaaattgtttgatatctatgcaaccactcattggatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaaGAGTTTCTCCCA-TATTAACTTAGCTAAG----TAA----TT--ACTT---AAACACCCGTA-AAACAT------GTGGAAA---A----AATTGA-CTTAAGCAAAAC
gi|11 : tAGTTTCTCTAA-C-TTAGCTAAAGTAAA----T-T----CT-----T---AAAATCT--TA-AAACAT------GCATAAATGTA----TACCAATa
gi|12 : cccTCTTTGCATTGGTGACGAGTTTGATTCTATAGGCAA--------GTCTTCTGACAGC---TGTTAAT
gi|14 : GAGTTTCACCAA-CATTTACTCAGCT-------------------------AAAAA-T--TA-AATCCT------GCAGAAATGTA----TACTa
gi|15 : AGTTTCACTAA-TATTCACTTAGCTGAG------------T--AAATGCAAAAAACT--TT-AA--GT------GCA
gi|16 : tTAGACACCCAGGTTAAAC-TTTGCGTTTATTTACGTTAAAGTT
gi|2 : ctGAGTTTCACCAA-CATTAACTGAGCTTAG----T-A----CT-----T---AAAAACT--TA-AAACAT------GCAGAAATGTA----CACTGA-TTTAAGTAAAAC
gi|3 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATagttttaaatgcttacataaagatacatttgaagcatttttgtatcaacttgtttttgtaaatgttgctgaaacccgacc
gi|4 : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATCatt
gi|5 : tagcaactaacttGTGTCACCAA-CATTAACTGAGCAAAG------------T--AAGT---ACAAGTT--TATAGACAT------GCACAATTGTA----TATTTATTT
gi|6 : ttgtCAT-CATTTGCTCAACTGAG----T-------T--AA-T---A----CT--TA-AAACGTATTATTGTTAAAATGCA----TACTGA-TTTAAGTAGAaggttaacaaatttatattgttata
gi|7 : taaacttTCGCCAA-CATAAACTTGACTAAGGAGAT-A----TT-----T---AAAAACT--TA-AAGCAT------GCAGAAACGTA----TACTGATTTTAAGTATAAcattaaattaaatgtctaca
gi|8 : tgAGTTTCACTGA-CATTCACTTAGCTAAG----T-AAATATT--AAA-----AAAACT--TA-AAGAAT------GCAGAAATGTATGTGTACTAA-TTTAAGTAAtaaacttaaa
gi|9 : atcaGAGTTTGGCCGG-CATTAA--AA--TAAA----T-A----CT-----T---AAACATT--TA-AAACAT------GTAGAAATTTA----TACTGATTTTAAGTAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGCAAGTTTCAATTCAGCTAACTTTCGTTGTACCTGTAAATGTTAAAAAAAC
Alignments
lowQualScore : 111111111
lowQualScore : 222 1 3333333 1 1 222 000000000 111 111111 1 11 111 222222222 2222 7777777777777 222222222 1 1 22222222 4444444444444444 111111 1
lowQualScore : 1 000 5 3333333 5 5 1 1 111 1 1 666666666 666 8 7 8 6 111111 1 1 7 0 0 7 2 99 8 0 444 6 333333333 8 7 1 1 7 8 0 7 1 0000 7 2222222222222 222222222 1 0 77 0 77 33333333 2 1 1 1 6 7 5 1 6666666666666666 3 55 4 111111 8888 8
lowQualScore : . ... . ....... . . . . ... . . ......... ... . . . . ...... . . . . . . . .. . . ... . ......... . . . . . . . . . .... . ............. ......... . . .. . .. ........ . . . . . . . . ................ . .. . ...... .... .
lowQualScore : 0 555 5 0000000 5 5 0 0 000 0 0 777777777 777 3 0 3 7 333333 0 0 0 7 7 3 3 33 3 7 333 7 333333333 3 3 0 0 0 3 7 0 0 7777 3 0000000000000 333333333 0 0 00 8 88 22222222 5 0 0 0 7 3 4 0 5555555555555555 1 55 0 555555 5555 2
consensus : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCCTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTG-AAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCACATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------------GTTTTT-G-CTA--TAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TA----CTAA--TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
Reference ( family-1673 ) : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTT---------TGCGTTTAAGTT-TCAGTTATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTGTTTACCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACTTAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTTA-AAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATT-TC-TTTTGGCACAGTTATGGCC------------GTTTTTGGGCTA--TAGACACCCAGNTTAAAC-TTTGNGTTTANTTGCGTTNAAGTTTGTTTGATATCTATGCAACCACTCATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TA----CTAA--TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
gi|1 : TTTTGATGCTCAATTTCATTTTAGA---TAATAATATATAAT-------AGAATCAAA-TAAATATATGATTATTTTTATTAGCTCGCCGAGACGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTT---------TGCGTTTAAGTT-TCAGTTATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTGTTTACCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACTTAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTTA-AAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATT-TC-TTTTGGCACAGTTATGGCC------------GTTTTTGGGCTA---AGACACCCAGCTTAAAC-TTTGAGTTTAGTTGCGTTTAAA-TTGTTTGATATCTATGCAACCACTCATTGG
gi|1 : TAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTT-AAAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATTTC-TTTTGGCACAGTTATGGCC-GTTTTTGGGCTAAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGA------ACATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTT-GCATTTTGGCACAGTAATGGCC------------CTTTTT----TACTTAATTTTTCAGGTTAAAG-TTT---TTTA-TCACGT--AA--------GATATCTATGCAACCACTAATTGGatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaactAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGAA------CATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTTGCATTTTGGCACAGTAATGGCCCTTTTTT--ACTTAATTTTTCAGGTTAAAGTTT---TTTA-TCACGT---------AAGATATCTATGCAACCACTAATTGGATATGAATGAAACTTCGTATGTGTGTTCAACATCATCATTGAAACACACAGAGATAAGAACCATAACTCTGGGTTGCC-TTTTGACATAG-TATGGCCCTTTAAGACTTAATTTTTCGTCTG--TAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTCCCTCCAATCTCACCCTTTGCATTGGTGGTGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGATAACTCTTGTAAATTGATCTTTAAAATTCTTTTATCGAACTTCTCAATCATTAATTAAGCTCAGTC--TA----CAAA--TAAAAACT--TA-AAATAT------GCAGAAATGTA----TACTGA--TTAAGCAAAACtggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|10 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaagacacccagcttaaactttgagtttagttgcgtttaaattgtttgatatctatgcaaccactcattggatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaaGAGTTTCTCCCATATTAACTTAGCTAAG----TA----ATTACTTAAACACCCGTA-AAACAT------GTGGAAA---A----AATTGA-CTTAAGCAAAAC
gi|11 : tAGTTTCTCTAAC-TTAGCTAAAGTAAA----TT----CT----TAAAATCT--TA-AAACAT------GCATAAATGTA----TACCAATa
gi|12 : cccTCTTTGCATTGGTGACGAGTTTGATTCTATAGGCAA--------GTCTTCTGACAGC---TGTTAAT
gi|14 : GAGTTTCACCAACATTTACTCAGCTAA------------------AAA---T--TA-AATCCT------GCAGAAATGTA----TACTa
gi|16 : --TAGACACCCAGGTTAAAC-TTTGCGTTTATTTACGTTAAAGTT
gi|2 : ctGAGTTTCACCAACATTAACTGAGCTTAG----TA----CT----TAAAAACT--TA-AAACAT------GCAGAAATGTA----CACTGA-TTTAAGTAAAAC
gi|3 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATagttttaaatgcttacataaagatacatttgaagcatttttgtatcaacttgtttttgtaaatgttgctgaaacccgacc
gi|4 : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATCatt
gi|5 : tagcaactaacttGTGTCACCAACATTAACTGAGCAAAG----TA------AG--TACAAGTT--TATAGACAT------GCACAATTGTA----TATTTATTT
gi|6 : ttgtCATCATTTGCTCAACTGAG----T------TAA--TA----CT--TA-AAACGTATTATTGTTAAAATGCA----TACTGA-TTTAAGTAGAaggttaacaaatttatattgttata
gi|7 : taaacttTCGCCAACATAAACTTGACTAAGGAGATA----TT----TAAAAACT--TA-AAGCAT------GCAGAAACGTA----TACTGATTTTAAGTATAAcattaaattaaatgtctaca
gi|8 : tgATCAAGTTTCACTGACATTCACTTAGCTAAG----TAAATATTAA---AAAAACT--TA-AAGAAT------GCAGAAATGTATGTGTACTAA-TTTAAGTAAtaaacttaaa
gi|9 : TCGAGTTTGGCCGGCATTAA--AA--TAAA----TA----CT----TAAACATT--TA-AAACAT------GTAGAAATTTA----TACTGATTTTAAGTAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGCAAGTTTCAATTCAGCTAACTTTCGTTGTACCTGTAAATGTTAAAAAAAC
Unaligned ( gi|15 ): TAGTTTCACTAATATTCACTTAGCTGAGTAAATGCAAAAAACTTTAAGTGCA
Alignments
lowQualScore : 222 1 3333333 1 1 222 111 111 111111 22 111 22222222222 1111 88888888888888888888888 11 1 22222222 4444444444444444 111111 1
lowQualScore : 1 000 5 3333333 5 5 1 1 111 1 1 444 444 111111 7 3 55 444 6 0 22222222222 7 4 7777 7 00000000000000000000000 55 0 55 8 66 55555555 1 1 1 1 6 7 5 1 6666666666666666 3 55 4 111111 8888 8
lowQualScore : . ... . ....... . . . . ... . . ... ... ...... . . .. ... . . ........... . . .... . ....................... .. . .. . .. ........ . . . . . . . . ................ . .. . ...... .... .
lowQualScore : 0 555 5 0000000 5 5 0 0 000 0 0 000 000 000000 3 7 33 000 7 7 33333333333 3 0 7777 3 33333333333333333333333 66 0 00 8 88 55555555 0 0 0 0 7 3 4 0 5555555555555555 1 55 0 555555 5555 2
consensus : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCNTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTC--G-CTGTAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TA----CTAA--TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
Reference ( family-1673 ) : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCCTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCACATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTT--G-CTATAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TA----CTAA--TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
gi|1 : TTTTGATGCTCAATTTCATTTTAGA---TAATAATATATAAT-------AGAATCAAA-TAAATATATGATTATTTTTATTAGCTCGCCGAGACGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTT---------TGCGTTTAAGTT-TCAGTTATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTGTTTACCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACTTAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTTAAA-GATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATT-TC-TTTTGGCACAGTTATGGCC------G-------TTTTTGGG-CTA-AGACACCCAGCTTAAAC-TTTGAGTTTAGTTGCGTTTAAA-TTGTTTGATATCTATGCAACCACTCATTGG
gi|1 : TAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTT-AAAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATTTC-TTTTGGCACAGTTATGGCCGTTTTTG-GGCTAAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGAA------CATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTT-GCATTTTGGCACAGTAATGGCC------C-------TTTTTT-A-CT-TAATTTTTCAGGTTAAAG-TTT---TTTA-TCACGT--AAG--------ATATCTATGCAACCACTAATTGGatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaactAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGAA------CATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTTGCATTTTGGCACAGTAATGGCCCTTTTTT--ACTTAATTTTTCAGGTTAAAGTTT---TTTA-TCACGT--------AA-GATATCTATGCAACCACTAATTGGATATGAATGAAACTTCGTATGTGTGTTCAACATCATCATTGAAACACACAGAGATAAGAACCATAACTCTGGGTTGCC-TTTTGACATAG-TATGGCCCTTTAAGACTTAATTTTTC--GTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTCCCTCCAATCTCACCCTTTGCATTGGTGGTGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGATAACTCTTGTAAATTGATCTTTAAAATTCTTTTATCGAACTTCTCAATCATTAATTAAGCTCAGTC--TA----CAAA--TAAAAACT--TA-AAATAT------GCAGAAATGTA----TACTGA--TTAAGCAAAACtggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|10 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaagacacccagcttaaactttgagtttagttgcgtttaaattgtttgatatctatgcaaccactcattggatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaaGAGTTTCTCCCATATTAACTTAGCTAAG----TA----ATTACTTAAACACCCGTA-AAACAT------GTGGAAA---A----AATTGA-CTTAAGCAAAAC
gi|11 : tAGTTTCTCTAAC-TTAGCTAAAGTAAA----TT----CT----TAAAATCT--TA-AAACAT------GCATAAATGTA----TACCAATa
gi|12 : cccTCTTTGCATTGGTGACGAGTTTGATTCTATAGGCAA--------GTCTTCTGACAGC---TGTTAAT
gi|14 : GAGTTTCACCAACATTTACTCAGCTAA------------------AAA---T--TA-AATCCT------GCAGAAATGTA----TACTa
gi|16 : TAGACACCCAGGTTAAAC-TTTGCGTTTATTTACGTTAAAGTT
gi|2 : ctGAGTTTCACCAACATTAACTGAGCTTAG----TA----CT----TAAAAACT--TA-AAACAT------GCAGAAATGTA----CACTGA-TTTAAGTAAAAC
gi|3 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATagttttaaatgcttacataaagatacatttgaagcatttttgtatcaacttgtttttgtaaatgttgctgaaacccgacc
gi|4 : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATCatt
gi|5 : tagcaactaacttGTGTCACCAACATTAACTGAGCAAAG----TA------AG--TACAAGTT--TATAGACAT------GCACAATTGTA----TATTTATTT
gi|6 : ttgtCATCATTTGCTCAACTGAG----T------TAA--TA----CT--TA-AAACGTATTATTGTTAAAATGCA----TACTGA-TTTAAGTAGAaggttaacaaatttatattgttata
gi|7 : taaacttTCGCCAACATAAACTTGACTAAGGAGATA----TT----TAAAAACT--TA-AAGCAT------GCAGAAACGTA----TACTGATTTTAAGTATAAcattaaattaaatgtctaca
gi|8 : tgATCAAGTTTCACTGACATTCACTTAGCTAAG----TAAATATTAA---AAAAACT--TA-AAGAAT------GCAGAAATGTATGTGTACTAA-TTTAAGTAAtaaacttaaa
gi|9 : TCGAGTTTGGCCGGCATTAA--AA--TAAA----TA----CT----TAAACATT--TA-AAACAT------GTAGAAATTTA----TACTGATTTTAAGTAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGCAAGTTTCAATTCAGCTAACTTTCGTTGTACCTGTAAATGTTAAAAAAAC
Unaligned ( gi|15 ): TAGTTTCACTAATATTCACTTAGCTGAGTAAATGCAAAAAACTTTAAGTGCA
Alignments
lowQualScore : 222 1 3333333 1 1 222 111 111 111111 22 111 22222222222 1111 88888888888888888888888 11 1 22222222 4444444444444444 111111 1
lowQualScore : 1 000 5 3333333 5 5 1 1 111 1 1 444 444 111111 7 1 55 444 6 0 22222222222 7 3 7777 7 55555555555555555555555 55 0 55 8 66 55555555 1 1 1 1 6 7 5 1 6666666666666666 3 55 4 111111 8888 8
lowQualScore : . ... . ....... . . . . ... . . ... ... ...... . . .. ... . . ........... . . .... . ....................... .. . .. . .. ........ . . . . . . . . ................ . .. . ...... .... .
lowQualScore : 0 555 5 0000000 5 5 0 0 000 0 0 000 000 000000 3 0 33 000 7 7 33333333333 3 7 7777 3 00000000000000000000000 22 0 00 8 88 55555555 0 0 0 0 7 3 4 0 5555555555555555 1 55 0 555555 5555 2
consensus : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCNTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTC--G-CTGTAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TA----CTAA--TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
Reference ( family-1673 ) : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCNTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTC--G-CTGTAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TA----CTAA--TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
gi|1 : TTTTGATGCTCAATTTCATTTTAGA---TAATAATATATAAT-------AGAATCAAA-TAAATATATGATTATTTTTATTAGCTCGCCGAGACGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTT---------TGCGTTTAAGTT-TCAGTTATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTGTTTACCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACTTAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTTAAA-GATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATT-TC-TTTTGGCACAGTTATGGCC------G-------TTTTTGGG-CTA-AGACACCCAGCTTAAAC-TTTGAGTTTAGTTGCGTTTAAA-TTGTTTGATATCTATGCAACCACTCATTGG
gi|1 : TAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTT-AAAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATTTC-TTTTGGCACAGTTATGGCCGTTTTTG-GGCTAAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGAA------CATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTT-GCATTTTGGCACAGTAATGGCC------C-------TTTTTT-A-CT-TAATTTTTCAGGTTAAAG-TTT---TTTA-TCACGT--AAG--------ATATCTATGCAACCACTAATTGGatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaactAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGAA------CATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTTGCATTTTGGCACAGTAATGGCCCTTTTTT--ACTTAATTTTTCAGGTTAAAGTTT---TTTA-TCACGT--------AA-GATATCTATGCAACCACTAATTGGATATGAATGAAACTTCGTATGTGTGTTCAACATCATCATTGAAACACACAGAGATAAGAACCATAACTCTGGGTTGCC-TTTTGACATAG-TATGGCCCTTTAAGACTTAATTTTTC--GTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTCCCTCCAATCTCACCCTTTGCATTGGTGGTGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGATAACTCTTGTAAATTGATCTTTAAAATTCTTTTATCGAACTTCTCAATCATTAATTAAGCTCAGTC--TA----CAAA--TAAAAACT--TA-AAATAT------GCAGAAATGTA----TACTGA--TTAAGCAAAACtggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|10 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaagacacccagcttaaactttgagtttagttgcgtttaaattgtttgatatctatgcaaccactcattggatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaaGAGTTTCTCCCATATTAACTTAGCTAAG----TA----ATTACTTAAACACCCGTA-AAACAT------GTGGAAA---A----AATTGA-CTTAAGCAAAAC
gi|11 : tAGTTTCTCTAAC-TTAGCTAAAGTAAA----TT----CT----TAAAATCT--TA-AAACAT------GCATAAATGTA----TACCAATa
gi|12 : cccTCTTTGCATTGGTGACGAGTTTGATTCTATAGGCAA--------GTCTTCTGACAGC---TGTTAAT
gi|14 : GAGTTTCACCAACATTTACTCAGCTAA------------------AAA---T--TA-AATCCT------GCAGAAATGTA----TACTa
gi|16 : TAGACACCCAGGTTAAAC-TTTGCGTTTATTTACGTTAAAGTT
gi|2 : ctGAGTTTCACCAACATTAACTGAGCTTAG----TA----CT----TAAAAACT--TA-AAACAT------GCAGAAATGTA----CACTGA-TTTAAGTAAAAC
gi|3 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATagttttaaatgcttacataaagatacatttgaagcatttttgtatcaacttgtttttgtaaatgttgctgaaacccgacc
gi|4 : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATCatt
gi|5 : tagcaactaacttGTGTCACCAACATTAACTGAGCAAAG----TA------AG--TACAAGTT--TATAGACAT------GCACAATTGTA----TATTTATTT
gi|6 : ttgtCATCATTTGCTCAACTGAG----T------TAA--TA----CT--TA-AAACGTATTATTGTTAAAATGCA----TACTGA-TTTAAGTAGAaggttaacaaatttatattgttata
gi|7 : taaacttTCGCCAACATAAACTTGACTAAGGAGATA----TT----TAAAAACT--TA-AAGCAT------GCAGAAACGTA----TACTGATTTTAAGTATAAcattaaattaaatgtctaca
gi|8 : tgATCAAGTTTCACTGACATTCACTTAGCTAAG----TAAATATTAA---AAAAACT--TA-AAGAAT------GCAGAAATGTATGTGTACTAA-TTTAAGTAAtaaacttaaa
gi|9 : TCGAGTTTGGCCGGCATTAA--AA--TAAA----TA----CT----TAAACATT--TA-AAACAT------GTAGAAATTTA----TACTGATTTTAAGTAAAA
blockSeqs : A CCA . TTTAAAC A . C T . A C GGA GTT ACTTCA A G G GAG G TTAAATTGTTT A G GCA T CTTTAAGACTTAATTTTTCGT GT T GC G TT . A G T A G T T T TAAATATTAA C CG T ATTATT TGTG T
blockSeqs : GAG AA . . C . . . AA . . GCC . CTTTTTTA T . GC T TA . . T A TAATTACT A . . . . T
blockSeqs : . . . . A C GAGATATT A . . . . T
blockSeqs : A G TTCT A . . . . T
blockSeqs : A G TACT A . . . . .
blockSeqs : G C TAAG A . . . . .
blockSeqs : A T TTAA C . . . . .
blockSeqs : G T TACT . . . . . .
blockSeqs : A . . . . . .
blockSeqCons : TACT************
originalCons : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCNTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTC--G-CTGTAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TA----CTAA--TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
finalCons : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCNTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTC--G-CTGTAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAGTACT------------TAAAAACT--TA-AAACAT------GCAGAAATGTA----TACTGATTTTAAGTAAAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGCAAGTTTCAATTCAGCTAACTTTCGTTGTACCTGTAAATGTTAAAAAAAC
Unaligned ( gi|15 ): TAGTTTCACTAATATTCACTTAGCTGAGTAAATGCAAAAAACTTTAAGTGCA
Alignments
lowQualScore : 222 1 3333333 1 1 222 111 111 111111 22 111 22222222222 1111 88888888888888888888888 11 1 22222222 22222222222222222 1
lowQualScore : 1 000 5 3333333 5 5 1 1 111 1 1 444 444 111111 7 1 55 444 6 0 22222222222 7 3 7777 7 55555555555555555555555 55 0 55 8 66 55555555 1 1 1 1 6 7 5 1 66666666666666666 55 55 4 8888 8
lowQualScore : . ... . ....... . . . . ... . . ... ... ...... . . .. ... . . ........... . . .... . ....................... .. . .. . .. ........ . . . . . . . . ................. .. .. . .... .
lowQualScore : 0 555 5 0000000 5 5 0 0 000 0 0 000 000 000000 3 0 33 000 7 7 33333333333 3 7 7777 3 00000000000000000000000 22 0 00 8 88 55555555 0 0 0 0 7 3 4 0 44444444444444444 55 55 0 5555 2
consensus : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCNTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTC--G-CTGTAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TAC---T-----TAAAA--ACT--TA-AAACATGCAGAAATGTA----TACTGATTTTAAGTAAAAC
Reference ( family-1673 ) : TTTTGGTGNTCAATTTCATTTTAGACCATAATAATATATAATTTTAAACAGAATCAAAACAAATATNTNATTATTTTTATTAGCTCGNCGAGNCGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTTGGGTTTAGTTGCGTTTAAGTT-TNAGATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTTACCATCATCAATGGAACACACAGAGACAAGAACCATAACTTTGAATTGCATTTTGGCACAGTTATGGCCNTTTTTT-GACTTAGACACCCAGGTTAAACTTTGGGTTTAGTCGCGTTTAAGTTGAA-GATATCTATGCAACCACTCATTGGATGTGAATGAAACTTCGCATGTGTGTTCACCATCATCATTGAAACACACAGAGACAAGAACCATAACTTTGAGTT-NC-TTTTGGCACAGTTATGGCC------G-------TTTTC--G-CTGTAGACACCCAGGTTAAAC-TTTGCGTTTAGTTGCGTTTAAGTTTGTTTGATATCTATGCAACCACTNATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTNCCTCCNATCTCANTCTTTGCATTGGTGGCGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATTGATCTTTAAAATTCTTTTATCGAGTTTCGCCAACATTAACTNAGCTAAG----TAC---T-----TAAAA--ACT--TA-AAACATGCAGAAATGTA----TACTGATTTTAAGTAAAAC
gi|1 : TTTTGATGCTCAATTTCATTTTAGA---TAATAATATATAAT-------AGAATCAAA-TAAATATATGATTATTTTTATTAGCTCGCCGAGACGAAGTCCAAGAAGAGCTGTTGTCATGACCCCGGCGTCGTCGGCGTCGTCTGTAGACACCCAGGTTAAACTTT---------TGCGTTTAAGTT-TCAGTTATATATGCATCCACTCATTGGATGTCAATGAAACTTTGCATGTGTGTTTACCATCATCAATGGAACACATAGAGATAATAACCATAACTCTGGATTGCATTTTGGCACAGTTATGGCCTTTTTTTTAACTTAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTTAAA-GATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATT-TC-TTTTGGCACAGTTATGGCC------G-------TTTTTGGG-CTA-AGACACCCAGCTTAAAC-TTTGAGTTTAGTTGCGTTTAAA-TTGTTTGATATCTATGCAACCACTCATTGG
gi|1 : TAGACACCCAGGTTTAGCTTTGGATTTAGTTGCGTTTAAGTT-AAAGATATCTATGCAACCACACATTGGATGTGAATGAAACTTCACATGTGTGTTTACCATTATAAATGGAACACACAGAGACAAGAACCATAACTTTTAATTTC-TTTTGGCACAGTTATGGCCGTTTTTG-GGCTAAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGAA------CATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTT-GCATTTTGGCACAGTAATGGCC------C-------TTTTTT-A-CT-TAATTTTTCAGGTTAAAG-TTT---TTTA-TCACGT--AAG--------ATATCTATGCAACCACTAATTGGatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaactAGACACCCAGCTTAAACTTTGAGTTTAGTTGCGTTTAAATTGTTTGATATCTATGCAACCACTCATTGGATGTGAATGAA------CATGTGTGTTCACCATCATCATTGAAACACACAGAGACAGGAACCATAACTTTGAGTTGCATTTTGGCACAGTAATGGCCCTTTTTT--ACTTAATTTTTCAGGTTAAAGTTT---TTTA-TCACGT--------AA-GATATCTATGCAACCACTAATTGGATATGAATGAAACTTCGTATGTGTGTTCAACATCATCATTGAAACACACAGAGATAAGAACCATAACTCTGGGTTGCC-TTTTGACATAG-TATGGCCCTTTAAGACTTAATTTTTC--GTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaatttttcgtctgtagacacccaggttaaacttttgcgtttagatgcgtttaagttttggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|1 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaTTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTCCCTCCAATCTCACCCTTTGCATTGGTGGTGAGTTTTATCCCATCGGCAAGCTTTGTTGTCTTCTGATAACTCTTGTAAATTGATCTTTAAAATTCTTTTATCGAACTTCTCAATCATTAATTAAGCTCAG----T-C---TACAAATAAAA--ACT--TA-AAATATGCAGAAATGTA----TACTGA--TTAAGCAAAACtggtgtttccctccaatctcaccctttgcattggtggtgagttttatcccatcggcaagctttgttgtcttctgataactcttgtaaattgatctttaaaattcttttatcgaacttctcaatcattaattaagctcagtctacaaataaaaacttaaaatatgcagaaatgtatactgattaagcaaaac
gi|10 : ttttgatgctcaatttcattttagataataatatataatagaatcaaataaatatatgattatttttattagctcgccgagacgaagtccaagaagagctgttgtcatgaccccggcgtcgtcggcgtcgtctgtagacacccaggttaaacttttgcgtttaagtttcagttatatatgcatccactcattggatgtcaatgaaactttgcatgtgtgtttaccatcatcaatggaacacatagagataataaccataactctggattgcattttggcacagttatggccttttttttaacttagacacccaggtttagctttggatttagttgcgtttaagttaaagatatctatgcaaccacacattggatgtgaatgaaacttcacatgtgtgtttaccattataaatggaacacacagagacaagaaccataacttttaatttcttttggcacagttatggccgtttttgggctaagacacccagcttaaactttgagtttagttgcgtttaaattgtttgatatctatgcaaccactcattggatgtgaatgaacatgtgtgttcaccatcatcattgaaacacacagagacaggaaccataactttgagttgcattttggcacagtaatggcccttttttacttaatttttcaggttaaagttttttatcacgtaagatatctatgcaaccactaattggatatgaatgaaacttcgtatgtgtgttcaacatcatcattgaaacacacagagataagaaccataactctgggttgccttttgacatagtatggccctttaagacttaaGAGTTTCTCCCATATTAACTTAGCTAAGTAATTAC---T-----TAAAC--ACCCGTA-AAACATGTGGAAA---A----AATTGA-CTTAAGCAAAAC
gi|11 : tAGTTTCTCTAAC-TTAGCTAAAGTAAA----TTC---T-----TAAAA--TCT--TA-AAACATGCATAAATGTA----TACCAATa
gi|12 : cccTCTTTGCATTGGTGACGAGTTTGATTCTATAGGCAA--------GTCTTCTGACAGC---TGTTAAT
gi|14 : GAGTTTCACCAACATTTACTCAGCTAA--------------------AA--A-T--TA-AATCCTGCAGAAATGTA----TACTa
gi|16 : TAGACACCCAGGTTAAAC-TTTGCGTTTATTTACGTTAAAGTT
gi|2 : ctGAGTTTCACCAACATTAACTGAGCTTAG----TAC---T-----TAAAA--ACT--TA-AAACATGCAGAAATGTA----CACTGA-TTTAAGTAAAAC
gi|3 : TTTTTCGTCTGTAGACACCCAGGTTAAACTTTTGCGTTTAGATGCGTTTAAGTTTTGGTGTTTGCCTCTTATCTCAATCTTTGCATTGGTGGCGAGTTTTATCCCATCAGCAAGCTTTGTTGTCTTCTGACAACTCTTGTTAATagttttaaatgcttacataaagatacatttgaagcatttttgtatcaacttgtttttgtaaatgttgctgaaacccgacc
gi|4 : TTTTAGTGATTAATTTCATTTTAGACCATAATAA-ATATAATTTTAAACAGAATCAAAACAAA-ATCTTATTATTTTTAT---CTTGACGAGCCAAAATCatt
gi|5 : tagcaactaacttGTGTCACCAACATTAACTGAGCAAAG----TAA---G-----TACAA--GTT--TATAGACATGCACAATTGTA----TATTTATTT
gi|6 : ttgtTCAACTGAGTTAA-----TAC---T-----TAAAA---CG--TA-TTAT-TGTTAAAATGCA----TACTGA-TTTAAGTAGAaggttaacaaatttatattgttata
gi|7 : taaacttcatcatttgcTCGCCAACATAAACTTGACTAAGGAGATAT---T-----TAAAA--ACT--TA-AAGCATGCAGAAACGTA----TACTGATTTTAAGTATAAcattaaattaaatgtctaca
gi|8 : tgATCAAGTTTCACTGACATTCACTTAGCTAAG----TAAATAT-----TAAAAAAACT--TA-AAGAATGCAGAAATGTATGTGTACTAA-TTTAAGTAAtaaacttaaa
gi|9 : TCGAGTTTGGCCGGCATTAA--AA--TAAA----TAC---T-----TAAAC--ATT--TA-AAACATGTAGAAATTTA----TACTGATTTTAAGTAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AGGGGCAAGTTTCAATTCAGCTAACTTTCGTTGTACCTGTAAATGTTAAAAAAAC
Unaligned ( gi|15 ): TAGTTTCACTAATATTCACTTAGCTGAGTAAATGCAAAAAACTTTAAGTGCA