lowQualScore : 11111111111111111 111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 333333333 1 11 88888888888888888888888888888888888888888888888888888888888888888888888 111111 22222222 1 1111 1 1 1 333 11 1 22222222222222222 111 2222222 44444444444444444 22222 222222 11 333 1 11 666666666666666666666 222222 3 33333333333333333 111 1 3333333 11111111111111111111111111111111111111111111111111111111111111111111111111111 22 1 1 666666666666666666666666666666666666666666666666 22 333333333333333 22 00000000000000000000 1 1 66666666 11111 1
lowQualScore : 000000000 0 3 33 4 88888888888888888888888888888888888888888888888888888888888888888888888 44 333333 5 4 33333333 5 0 5 0000 1 5 1 3 7 3 7 5 3 111 55 3 22222222222222222 444 5 7777777 6 44444444444444444 2 99999 1 000000 8 22 111 0 3 00 666666666666666666666 111111 0 55555555555555555 222 5 4444444 11111111111111111111111111111111111111111111111111111111111111111111111111111 33 0 2 1 8 0 4 3333 5 5 0 6 999999999999999999999999999999999999999999999999 1 11 4 888888888888888 3 77 00000000000000000000 1 5 7 6 8 4 0 1 55555555 3 33333 7 99 7 6 6
lowQualScore : ......... . . .. . ....................................................................... .. ...... . . ........ . . . .... . . . . . . . . . ... .. . ................. ... . ....... . ................. . ..... . ...... . .. ... . . .. ..................... ...... . ................. ... . ....... ............................................................................. .. . . . . . . .... . . . . ................................................ . .. . ............... . .. .................... . . . . . . . . ........ . ..... . .. . . .
lowQualScore : 444444444 2 3 77 4 22222222222222222222222222222222222222222222222222222222222222222222222 77 222222 7 4 44444444 1 1 2 6666 0 0 0 0 0 2 7 0 7 000 00 3 22222222222222222 000 4 6666666 7 44444444444444444 5 44444 0 888888 0 00 000 0 5 22 000000000000000000000 000000 0 00000000000000000 000 0 6666666 00000000000000000000000000000000000000000000000000000000000000000000000000000 00 5 2 4 0 8 0 5555 0 0 2 0 999999999999999999999999999999999999999999999999 0 77 7 777777777777777 7 00 33333333333333333333 0 0 3 7 8 0 0 2 33333333 7 33333 0 77 7 0 0
consensus : NNTTATTAG-TCCC----CTACCGGTTTCACCGGA-GGG-A-CTAT-----T-A---G-T-TTAC----C--CT------C--T--------CA---T--CTGGC----GTCCGTCTGTCCGGAAAGATTN-CTCAAAAA-GTATCCAAGCTA------GGTTTGTGAAACTTTGC----ATGTGGATAGAGGGCAATAAGGAGATAATGCAGGTCATTTTATTTNTTCAGTCGGACAAAAATT-GTGGTTGGTATGGCAAC-AAAGCGGTAAANTNNCNGTCTATCCGGA---AAGATTA------CTCAAAAA-G--TATCCAAGC------TAGGTTTGTGAAAC-TT--GCATGTGGATAGAGGG-C-A-TAA-GGAGATAATGCAGGTCA-TTTTAT-TT-TTCAGTCNGACAAAAA----------TTGTGGTTG-CATGGCAACAA-AATCGGTAAAATTACAGATACAA-CC-GGATCCCT-GTG-TAACACAAAANGTATCCAAGCTAC-A-----TTTGTGAAACTTTGCATGTGGATAGAGGGCAATAAG-GAGATAATGCAGGTCATTT-----TAT-----T----AGTTCAGNCGGACAAAAATTGTGGTTGNCATGGCAACAA-AATNGGTAAAATTACAGATACAACCTGGATCC--T---------------AC-AT---CACAA-TT-----------ACATTTGTGAAACTTTGCATGTGGA-TAGAGNGCAATAA--GGA-AT-ATNCAGGTCATTT-A------T-ATTTTC-GG-TCGGACAAAAATTGTGGTTGGTATGGCANCAA-AATCGGTAAAATTACA--GATACAANCTGGATCCTGTANTAACACAAAACGTGTCCAAGTT
Reference ( gi|1 ) : ATTTATTAG-AGCC----CTACCAGTTTCACCGGA-GGA-A-CTAT-----T-A---G-T-TTAC----C--CT------C-----------CA---T--CTGGC----ATCCGTTTGTTTGGAAACATTT-CTCAAAAA-GTATCCAAACTA------GGTTTTTGAAACTTTGT----ATGTGGATAGAGCGCAATAAGGAAATATTGCAGGTCATTTTATTTTTTCATTCGGACAAAAA-T-GTGGTTAATATGGCAAC-AAAAC-----ACTCTCTGT-TGTCCAGA---AATATTG------CTCAAAAA-G--TCGCAAAGC------TAGGTTTGTGAAAC--T--GCATGTGGATAGAGGG-C-A-TAA-GGAGATAATGCAGGTCG-TTTT-T-TT-TTCAGTCTGACAGGAA----------T----------ATGGCAACAA-AATAAGTAAA-TTACAGATACAA-CC-AGATTCAT-GTGATAACACAAGAAGTATGCAAGCTAC-T-----TTTGTGAAACTTTGCAT----ATAGA----AATAAG-GACATCATATAGATCCTTT-----AAT-----T----AGTTT--TC---CA------GTGAATGTTATGGTAACAA-AATTGGTAAAATTACAAATAGAACCTGGGTCT--T---------------AC-AT---CACAA--------------ACATTTGTGAAACTTTGCATGTGAA-AAGAGAGCAATAA--GAATATCATGCATCTCATTTAA------TTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGAACAA-AATTGGTAAAAATATATTAATACAACCTGGATCCTACAAGAACTCGGAAAGTATTCAAGCTG
gi|5 : TTATTAG-TCTC----CTACAAGTTTCACCAGA-AGAGA-CTAT-----T-A---G-GGTTACGTAGC--AT------C-----------TA---C--CTGGC----A-----------AGAAAGATTA-CTAAAAAAAGTATCCAAGCTACATGTAGGTTCGTGAAGCTTTGT----ATGTGAACAAA
gi|11 : TTATTAGTCCCC----CTACTGGTTCCACCGGATGGA-A-CTATA----T-A-----T-TAAC----C--TT------CTGTT-------CA---T--TGGGC----ATAC---TGTCTGGAAAGATTT-aa
gi|8 : TTATTAG-TCAC----TTACCGGTTTCACTGGA-GTG-G-CTATA----T-A---GAT-TTAC----G--CT------CCATT-------CA---T--CAGGC----GTCAATCCGTTCGGAAGGATTA-CT
gi|13 : tggtaggTTGTTAG-TCTC----CTACCAGTTTCAACAGAGGGG-A-CTA------A-A---G-T-TAAA----A--CT------------------TA---T------T----ATCCGTATGTCTGGAAAGATT
gi|6 : ATTAG-TCCC----CTACCAGATTCACAGAA-GGC-A-CTAT-----T-ATAGG-T-TAAC----C--CT------CTGTCCATCGAGCA---T--CTGGTGTCTATCCGTCAGACCAGAAA-GTTTACTTAAAAA-GTATCCAA
gi|4 : ctgATTAG-TCCC----CTGTTGGTTTCACTGGAGGGG-A-CTGTACATGT-AT--G-T-TTAT----C--GT------C-----------CAATGT--CTGGC----GTCCATCTGTTGGG------------GGGGA-ATAT---AACTA------A--CTTTGAAAC--TGC----ACGTGGGAAGAGGGAAATATGGAGATAATGTAGg
gi|16 : ATTAG-AGCCTAACCTGCGAGTTTCACCAAG-GGAGA-CTAT-----A-G---G-T-TTA
gi|9 : TAGCAGTTTCACCAGA-GGA-ATCTAT-------A---A-T-CTA---------T------C-----------CA---T--CTGTCT---GTCTGTCTATCTGGAAATATTA-CTCAAAAA-
gi|7 : attcaatatagttaatGTTTTATGGGA-GGGGA-CTTT-----TTG---G-C-TTAC----CGTCTTGCCAGC-----------CA---TGTCTGGC-------CGTCAGTCCGAAAAGAGCA-CTCAAAAA-GTATCTATGTTA------GGTTTGTCAAACGTTGC----ATGT
gi|3 : TGGTAACA------CAAAAC-ATATCCAAGTTA------CATTTGTGAAACATTGC----ATGGGGATA---------AAGGAGATAATACAGGTTATTTTA-TTTTTCAGTCTGACAAAAATT-GTGGTTGGTATGGCATC-AAAA
gi|14 : tactggtgggcaaactttgtatgtggatagagggcaataaggagataattcaggtcattttatatgttcagttggacacaaattgtggttggtatggcaacaaaagcggtaaaattacagatacaaactgaatcctgGAAAGATTT-CTAAAACA-GTGTCCAAGCTT------ATTTTGTGAAACTTTAT----ATGttggtaaatc
gi|2 : aAACATTT-TT-AATGA-TGGCCCAAACTA------CATTTGTG----TTTCTTACCATGTGGATAGAGGGCAAAAAGGAGATAATGCAGGTCATTTTATTTATTCAGTCAGACAAAAATT-GTGGTTGCCATAGTAAC-AAAccaacaaaa
gi|10 : TCAAAAA-GAATCCATACTA------GGTTT-----GCCT-----------GGATAGAGAGCAATAAGAAAAGAATGCAGGTTGATTTATTTtgggtaaaattgaatatacaacctggatccttcgttaacacaatttgtatccaagctgcatttgtgaaacttagcatgtaaatagagtgcaataaatgaagtcatgcacatcatttaaaaaaaataattcagtcggacaaaattgtggttgccgtggcatcgaaatacgtaggaaaatacaacctggatcctgcaagaaaaccgaaagggaacctatgtattgctttgcaata
gi|3 : AAACTTTGT----ATGTGGATAGAGGGCAATAAGGAGATAATTCAGGTCATTTTATATGTTCAGTTGGACACAAA-TTGTGGTTGGTATGGCAACAAAAGCGGTAAAATTACAG---ATACAAACTGAATCCTGTGGTAACACAAAAC-A--TATCCAAGT------TACATTTGTGAAACATT--GCATGGGGATA-----------AA-GGAGATAATACAGGTTA-TTTTAT-TT-TTCAGTCTGACAAAAATTGTGGTTGGT----------ATGGCATCAA-AATTGGTAAA-Tgacagtctgatag
gi|9 : tactggtgggcCTGTCTGTCTATCTGGA---AATATTA------CTCAAAAA-c
gi|7 : attcaatatagttaattagcagtttcaccagaggaatctataatctatccatctgtGTCCGAA---AAGAGCA------CTCAAAAA-G--TATCTATGT------TAGGTTTGTCAAACGTT--GCATGT
gi|5 : gttttatgggaggggactttttggcttaccgtcttgccagccatgtctggccgtcaAGA---AAGATTA------CTAAAAAAAG--TATCCAAGCTACATGTAGGTTCGTGAAGCTTT--GTATGTGAACAAA
gi|14 : ttattagtctcctacaagtttcaccagaagagactattagggttacgtagcatctacctggcaAGA---AAGATTT------CTAAAACA-G--TGTCCAAGC------TTATTTTGTGAAAC--T--TTATATGaa
gi|10 : TCAAAAA-GAATC-CATA-C------TAGGTTTGC----C----------TGGATAGAGAG-CAA-TAA-GAAAAGAATGCAGGTTGATTTA-T-TT-GACAGTCTGATAGccaacaaaa
gi|4 : TGAAAC--T--GCACGTGGGAAGAGGGAA-A-TAT-GGAGATAATGTAG
gi|3 : attagtcccctgttggtttcactggaggggactgtacatgtatgtttatcgtccaatgtctggcgtccatctgttgggggggaatataactaacttAAAC--TTTGTATGTGGATAGAGGG-C-AATAA-GGAGATAATTCAGGTCA-TTTTATATG-TTCAGTTGGACACAAA----------TTGTGGTTGGTATGGCAACAA-AAGCGGTAAAATTACAGATACAA-AC-TGAATCCT-GTGGTAACACAAAACATATCCAAGTTAC-A-----TTTGTGAAACATTGCAT----GGGGA----TA-AAG-GAGATAATACAGGTTATTT-----TAT-----TTTTCAGTCT--GA---CAAAAATTGTGGTTGGTATGGCATCAA-AATTGGTAAA
gi|2 : tactggtgggcCATGTGGATAGAGGG-C-A-AAAAGGAGATAATGCAGGTCA-TTTTAT-TTATTCAGTCAGACAAAAA----------TTGTGGTTGCCATAGTAACAA-A-TGGGTAAAATTGAATATACAA-CCTGGATCCTTCGT--TAACACAATTTGTATCCAAGCTGC-A-----TTTGTGAAACTTAGCATGTAAATAGAGTGCAATAAATGAAGTCATGCACATCATTTAAAAAAAA-----T----AATTCAGTCGGACAAAATT-GTGGTTGCCGTGGCATCGA-AATACGTAGGA----AAATACAACCTGGATCC--T---------------GC-Atc
gi|12 : aacatttttaatgatggcccaaactacatttgtgtttcttacACAACAATTGGTAAAATTACAGTTACAATCT-GGATCC-T-GTACTAACACAAAATGTGTCCAAGagaaaaccgaaagggaacctatgtattgctttgcaata
gi|5 : tgtaagttggAAAAAGTATCCAAGCTACATGTAGGTTCGTGAAGCTTTGTAT----GT-GA----A
gi|14 : ttattagtctcctacaagtttcaccagaagagactattagggttacgtagcatctacctggcaagaaagattactaaAGTGTCCAAGCTTA-T-----TTTGTGAAACTTTATAT----caaaaa
gi|2 : agaaagatttctaaaacCAAACTAC-A-----TTTGTGTTTCTTACCATGTGGATAGAGGGCAAAAAG-GAGATAATGCAGGTCATTT-----TAT-----T----TATTCAGTCAGACAAAAATTGTGGTTGCCATAGTAACAA-A-TGGGTAAAATTGAATATACAACCTGGATCC--T---------------TC-GTTAACACAATTTGTATCCAAGCTGCATTTGTGAAACTTAGCATGTAAA-TAGAGTGCAATAAATGAA-GTCATGCACATCATTTAAAAAAAATAATTC----AGTCGGACAAAA-TTGTGGTTGCCGTGGCATCGA-AATACGTAGGAA------AATACAACCTGGATCCTGCAAGAAAACCGAAAGgccaacaaaa
gi|3 : aacatttttaatgatggccAAACTTTGTATGTGGATAGAGGGCAATAAG-GAGATAATTCAGGTCATTT-----TATATGTTC----AGTTG--GA---CACAAATTGTGGTTGGTATGGCAACAA-AAGCGGTAAAATTACAGATACAAACTGAATCC--TGTGGTAACACAAAACAT-AT---C-CAAGTT-----------ACATTTGTGAAACATTGCATGGGGATAAAGGAG----------ATA--ATACAGGTTATTT---------TATTTTTCAG-TCTGACAAAAATTGTGGTTGGTATGGCATCAA-AATTGGTAAAggaacctatgtattgctttgcaata
gi|12 : tactggtgggcACAACAATTGGTAAAATTACAGTTACAATCTGGATCCTGT---------------ACTAA---CACAA--------------A-ATGTGTtc
gi|3 : tgtaagttggAAACTTTGTATGTGGA-TAGAGGGCAATAA--GGAGATAATTCAGGTCATTTTA------T-ATGTTCAG--TTGGACACAAATTGTGGTTGGTATGGCAACAA-AAGCGGTAAAATTACA--GATACAAACTGAATCCTGTGGTAACACAAAACATATCCAAGTccaag
gi|12 : tactggtgggcGGACAACAATTGGTAAAATTACAGT--TACAATCTGGATCCTGTACTAACACAAAATGTGTCCAAGacatttgtgaaacattgcatggggataaaggagataatacaggttattttatttttcagtctgacaaaaattgtggttggtatggcatcaaaattggtaaatc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATTCCCAGAGGGGATTATAGGTGTACCCTCTGTCCGTCATGCATTCAGTGTCTATCT
Alignments
lowQualScore : 11111
lowQualScore : 1 7777777777777777777777777777777777777 1111 111111 222 4 11 00000 4 1 33 22222 1 1 1111 333 111 11 1 33 2222 444444 1 444444 11 111111 2222 55 1 6666 33 7777777777777 1 1 1 2 2222 1
lowQualScore : 5 0 0 999 5 2222222222222222222222222222222222222 999999 77 66 0000 2 2 1 5 999999 1 2 7 1 3 0 4 000 2 2 0 22 6 00000 1 22 1 0 6 6 5 6 00 2 2 44444 3 3 7 6666 1 4 7 000 333 7 77 0 3 3 33 555 1111 999999 3 3 7 0 0 111111 11 7 1 777777 11 8 1 4444 6 2 55 6 7 1 6 2222 1 00 4444444444444 6 5 5 5 1 0 6 4 9999 1 44 4 0 6
lowQualScore : . . . ... . ..................................... ...... .. .. .... . . . . ...... . . . . . . . ... . . . .. . ..... . .. . . . . . . .. . . ..... . . . .... . . . ... ... . .. . . . .. ... .... ...... . . . . . ...... .. . . ...... .. . . .... . . .. . . . . .... . .. ............. . . . . . . . . .... . .. . . .
lowQualScore : 7 2 0 111 0 8888888888888888888888888888888888888 666666 22 55 6666 2 8 4 0 222222 7 5 2 2 7 7 0 555 5 5 0 00 0 00000 0 00 0 0 0 0 0 0 00 5 5 77777 3 3 3 7777 0 0 3 333 000 3 00 7 7 3 33 333 0000 000000 3 7 0 7 7 777777 00 3 0 000000 77 3 0 0000 0 5 00 0 0 0 0 0000 0 00 0000000000000 0 0 0 0 0 0 0 0 5555 0 00 0 5 0
consensus : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-A-CTATA----T-A---G-T-TTACCCTC---T----------CA---T--CTGGC-GTCCGTCTGT----CCGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAAT-GTGGTTAATATGGCAACAAAAC-----ACTCTCTGT-TGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCATG-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAA--ACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGAACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
Reference ( family-1660 ) : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-A-CTAT-----T-A---G-T-TTACCCTC---T----------CA---T--CTGGC-GTCCGTCTGT----CCGGAAAGATTNCTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGGGCAATAAGGAGATAATGCAGGTCATTTTATTTNTTCAGTCGGACAAAAATTGTGGTTGGTATGGCAACAAAGCGGTAAANTNNCNGTCTATCCGGAAAGATTACTCAAAAAGTATCCAAGCTAGGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCATTTTAT-TT-TTCAGTCNGACAAAAATTGTGGTTG-C-ATGGCAACAAAATCGGTAAAATTACAGATACAACC-GGATCCCT-GTG-TAACACAAAANGTATCCAAGCTACATTTGTGAAACTTTGCATGTGGATAGAGGGCAATAAG-GAGATAATGCAGGTCATTT-----TATTAGTTCAGNCGGACAAAAATTGTGGTTGNCATGGCAACAAAATNGGTAAAATTACAGATACAACCTGGATCCTACATCACAATTACATTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGA-AT-ATNCAGGTCATTTA--TATTTTC--GGTCGGACAAAAATTGTGGTTGGTATGGCANCAA-AATCGGTAAAATTACA--GATACAANCTGGATCCTGTANTAACACAAAACGTGTCCAAGTT
gi|1 : TTATTAGAGCCC-TACCAGTTTCACCGGA-GG-A-A-CTAT-----T-A---G-T-TTACCCTC--------------CA---T--CTGGC-ATCCGTTTGT----TTGGAAACATTTCTCAAAA-AGTATCCAAAC------TAGGTTTTTGAAACTTTGTATGTGGATAGAGCGCAATAAGGAAATATTGCAGGTCATTTTATTTTTTCATTCGGACAAAAAT-GTGGTTAATATGGCAACAAAAC-----ACTCTCTGT-TGTCCAGAAATATTGCTCAAAAAGTCGCAAAGCTAGGTTTGTGAAACT--GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTT-T-TT-TTCAGTCTGACAGGAAT-----------ATGGCAACAAAATAAGT-AAATTACAGATACAACC-AGATTCAT-GTGATAACACAAGAAGTATGCAAGCTACTTTTGTGAAACTTTGCAT----ATAGA----AATAAG-GACATCATATAGATCCTTT-----AATTAGTTT--TC---CA------GTGAATGTTATGGTAACAAAATTGGTAAAATTACAAATAGAACCTGGGTCTTACATCACAA--ACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGAACAA-AATTGGTAAAAATATATTAATACAACCTGGATCCTACAAGAACTCGGAAAGTATTCAAGC
gi|10 : atTCAAAA-AGAATCCATAC------TAGGTTTGC---------C---TGGATAGAGAGCAATAAGAAAAGAATGCAGGTTGATTTATTTG-ACAGTCTGATAg
gi|11 : TTATTAGTCCCCCTACTGGTTCCACCGGATGG-A-A-CTATA----T-A-----T-TAACCTTCTGTT----------CA---T--TGGGC-ATA---CTGT----CTGGAAAGATTg
gi|12 : CAACAATTGGTAAAATTACA--GTTACAATCTGGATCCTGTACTAACACAAAATGTGTCCAAGt
gi|14 : tgtaagttggaGAAAGATTTCTAAAAC-AGTGTCCAAGC------TTATTTTGTGAAACTTTATATG
gi|2 : aCCAAACTACATTTGTGTTTCTT-ACCATGTGGATAGAGGGCA-AAAAGGAGATAATGCAGGTCATTTTAT-TTATTCAGTCAGACAAAAATTGTGGTTG-CCATAGTAACAAA-TGGGTAAAATTGAATATACAACCTGGATCCTTCGT--TAACACAATTTGTATCCAAGCTGCATTTGTGAAACTTAGCATGTAAATAGAGTGCAATAAATGAAGTCATGCACATCATTTAAAAAAAATAATTCAGTCGGAC-AAAATTGTGGTTGCCGTGGCATCGAAATACGTAGGA----AAATACAACCTGGATCCTGCAccaacaaaa
gi|3 : aacatttttaatgatggcAAACTTTGT-ATGTGGATAGAGGGCAATAA-GGAGATAATTCAGGTCATTTTATATG-TTCAGTTGGACACAAATTGTGGTTGGT-ATGGCAACAAAAGCGGTAAAATTACAGATACAAAC-TGAATCCT-GTGGTAACACAAAACATATCCAAGTTACATTTGTGAAACATTGCATGGGGATA---------AAG-GAGATAATACAGGTTATTT-----TATT-TTTCAGTCTGACAAAAATTGTGGTTGGTATGGCATCAAAATTGGTAAAagaaaaccgaaagggaacctatgtattgctttgcaata
gi|4 : tactggtgggcATTAGTCCCC-TGTTGGTTTCACTGGAGGG-G-A-CTGTACATGT-AT--G-T-TTATCGTC--------------CAATGT--CTGGC-GTCCATCTGT----TGGGGGGG------------AATAT---AAC------TAACTT--TGAAAC--TGCACGTGGGAAGAGGGAAATATGGAGATAATGTAGtc
gi|5 : TTATTAGTCTCC-TACAAGTTTCACCAGA-AGAG-A-CTAT-----T-A---G-GGTTACG--------------------------TAGC-ATCTACCTGG----CAAGAAAGATTACTAAAAAAAGTATCCAAGCTACATGTAGGTTCGTGAAGCTTTGTATGTGAACAAA
gi|6 : ATTAGTCCCC-TACCAGATTCACAGAA-GG-C-A-CTAT-----T-ATAGG-T-TAACCCTC---TGTCCATCGAGCA---T--CTGGT-GTCTATCCGTCAGACCAGAAAGTTTACTTAAAA-AGTATCCAAGaa
gi|7 : ctgGTTTTATGGGA-GG-GGA-CTTT-----TTG---G-C-TTACCGTC---TTGCCAGC---CA---TGTCTGGC----CGTCAGT----CCGAAAAGAGCACTCAAAA-AGTATCTATGT------TAGGTTTGTCAAACGTTGCATGT
gi|8 : TTATTAGTCACT-TACCGGTTTCACTGGA-GT-G-G-CTATA----T-A---GAT-TTACGCTCCATT----------CA---T--CAGGC-GTCAATCCGT----TCGGAAGGATTACT
gi|9 : tggtagg-TAGCAGTTTCACCAGA-GG-A-ATCTAT-------A---A-T-CTATCC-----------------A---T--CTGTCTGTCTGTCTAT----CTGGAAATATTACTCAAAA-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTTAGTCTCCTACCAGTTTCAACAGAGGGGACTAAAGTTAAAACTTATTATCCGTATGTCTGGAAAGATT
Unaligned ( gi|15 ): ATTCCCAGAGGGGATTATAGGTGTACCCTCTGTCCGTCATGCATTCAGTGTCTATCT
Unaligned ( gi|16 ): ATTAGAGCCTAACCTGCGAGTTTCACCAAGGGAGACTATAGGTTTA
Alignments
lowQualScore : 1 11 111111111 66666666666666666 11111 111111 111 1111 1 1 1111 333 11 1 11 44444444444444 1 33333 333333 2222 1 11
lowQualScore : 5 0 0 999 11 999999999 5 55555555555555555 999999 77 4 22222 0 1 5 999999 1 2 7 1 1 1 777 1 1 1 2 7 7777 3 3 0 7 6666 3 1 7 000 7 1 7 77 1 3 00 444 77777777777777 3 1 33333 88 7 777777 1 0 4444 1 5 1 88 1 22 1 1
lowQualScore : . . . ... .. ......... . ................. ...... .. . ..... . . . ...... . . . . . . ... . . . . . .... . . . . .... . . . ... . . . .. . . .. ... .............. . . ..... .. . ...... . . .... . . . .. . .. . .
lowQualScore : 7 2 0 111 55 666666666 0 88888888888888888 666666 22 2 99999 5 4 0 222222 7 5 2 2 0 0 555 0 0 0 5 3 3333 3 3 7 3 7777 7 0 3 333 3 0 3 00 0 3 33 333 77777777777777 3 0 33333 33 3 000000 0 7 0000 0 0 0 55 0 00 0 0
consensus : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTAT-ATA-----G-T-TTA-CCCTC---T----------CA---T--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGGACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
Reference ( family-1660 ) : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTAT-ATA-----G-T-TTA-CCCTC---T----------CA---T--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGAACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
gi|1 : TTATTAGAGCCC-TACCAGTTTCACCGGA-GG-A-ACTAT--TA-----G-T-TTA-CCCTC--------------CA---T--CTGGC-ATCCGTTTGTT----TGGAAACATTTCTCAAAA-AGTATCCAAAC------TAGGTTTTTGAAACTTTGTATGTGGATAGAGCGCAATAAGGAAATATTGCAGGTCATTTTATTTTTTCATTCGGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCAAAGCTAGGTTTGTGAAAC-T-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTT-T-TT-TTCAGTCTGACAGGAAT-----------ATGGCAACAAAATAAGT-AAATTACAGATACAACC-AGATTCAT-GTGATAACACAAGAAGTATGCAAGCTACTTTTGTGAAACTTTGCAT-----ATAGA----AATAAG-GACATCATATAGATCCTTT-----AATTAGTTT--TC---CA------GTGAATGTTATGGTAACAAAATTGGTAAAATTACAAATAGAACCTGGGTCTTACATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGAACAA-AATTGGTAAAAATATATTAATACAACCTGGATCCTACAAGAACTCGGAAAGTATTCAAGCT
gi|10 : atTCAAAA-AGAATCCATAC------TAGGTTTGC---------C---TGGATAGAGAGCAATAAGAAAAGAATGCAGGTTGATTTATTTG-ACAGTCTGATAg
gi|11 : TTATTAGTCCCCCTACTGGTTCCACCGGATGG-A-ACTAT-ATA-------T-TAA-CCTTC---TGTT-------CA---T--TGGGC-ATAC---TGTC----TGGAAAGATTg
gi|12 : GGACAACAATTGGTAAAATTACA--GTTACAATCTGGATCCTGTACTAACACAAAATGTGTCCAAGt
gi|14 : tgtaagttGAAAGATTTCTAAAAC-AGTGTCCAAGC------TTATTTTGTGAAACTTTATATG
gi|2 : aCCAAACTACATTTGTGTTTCTT-ACCATGTGGATAGAGGGCA-AAAAGGAGATAATGCAGGTCATTTTAT-TTATTCAGTCAGACAAAAATTGTGGTTG-CCATAGTAACAAA-TGGGTAAAATTGAATATACAACCTGGATCCTTCGT--TAACACAATTTGTATCCAAGCTGCATTTGTGAAACTTAGCAT-GTAAATAGAGTGCAATAAATGAAGTCATGCACATCATTTAAAAAAAATAATTCAGTCGGAC-AAAATTGTGGTTGCCGTGGCATCGAAATACGTAGGA----AAATACAACCTGGATCCTGCAccaacaaaa
gi|3 : aacatttttaatgatggcAAACTTTGT-ATGTGGATAGAGGGCAATAA-GGAGATAATTCAGGTCATTTTATATG-TTCAGTTGGACACAAATTGTGGTTGGT-ATGGCAACAAAAGCGGTAAAATTACAGATACAAAC-TGAATCCT-GTGGTAACACAAAACATATCCAAGTTACATTTGTGAAACATTGCATGG-GGATA---------AAG-GAGATAATACAGGTTATTT-----TATT-TTTCAGTCTGACAAAAATTGTGGTTGGTATGGCATCAAAATTGGTAAAagaaaaccgaaagggaacctatgtattgctttgcaata
gi|4 : tactggtgggcATTAGTCCCC-TGTTGGTTTCACTGGAGGG-G-ACTGT-ACATGTATG-T-TTA-TCGTC--------------CAATGT--CTGGC-GTCCATCTGTT----GGGGGGG------------AATAT---AAC------TAACTT--TGAAAC--TGCACGTGGGAAGAGGGAAATATGGAGATAATGTAGtc
gi|5 : TTATTAGTCTCC-TACAAGTTTCACCAGA-AGAG-ACTAT--TA-----G-GGTTA-CG--------------------------TAGC-ATCTACCTGGC----AAGAAAGATTACTAAAAAAAGTATCCAAGCTACATGTAGGTTCGTGAAGCTTTGTATGTGAACAAA
gi|6 : ATTAGTCCCC-TACCAGATTCACAGAA-GG-C-ACTATTATA-----G-G-TTAACCCTC---TGTCCATCGAGCA---T--CTGGT-GTCTATCCGTCAGACCAGAAAGTTTACTTAAAA-AGTATCCAAGaa
gi|7 : ctgGTTTTATGGGA-GG-GGACTTT-TTG-----G-C-TTA-CCGTC---TTGCCAGC---CA---TGTCTGGC----CGTCAGTC----CGAAAAGAGCACTCAAAA-AGTATCTATGT------TAGGTTTGTCAAACGTTGCATGT
gi|8 : TTATTAGTCACT-TACCGGTTTCACTGGA-GT-G-GCTAT-ATA-----GAT-TTA-CGCTCCATT----------CA---T--CAGGC-GTCAATCCGTT----CGGAAGGATTACT
gi|9 : tggtagg-TAGCAGTTTCACCAGA-GG-A-A-TCT-ATA-----A-T-CTA-TCC-----------------A---T--CTGTCTGTCTGTCTATC----TGGAAATATTACTCAAAA-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTTAGTCTCCTACCAGTTTCAACAGAGGGGACTAAAGTTAAAACTTATTATCCGTATGTCTGGAAAGATT
Unaligned ( gi|15 ): ATTCCCAGAGGGGATTATAGGTGTACCCTCTGTCCGTCATGCATTCAGTGTCTATCT
Unaligned ( gi|16 ): ATTAGAGCCTAACCTGCGAGTTTCACCAAGGGAGACTATAGGTTTA
Alignments
lowQualScore : 1 11 111111111 66666666666666666 11111 111111 111 1111 1 1 1111 333 11 1 11 44444444444444 1 33333 333333 2222 1 11
lowQualScore : 5 0 0 999 11 999999999 5 55555555555555555 999999 77 4 22222 0 1 5 999999 1 2 7 1 1 1 777 1 1 1 2 7 7777 3 3 0 7 6666 3 1 7 000 7 1 7 77 1 3 00 444 77777777777777 3 1 33333 88 7 777777 1 0 4444 1 5 1 88 1 22 1 1
lowQualScore : . . . ... .. ......... . ................. ...... .. . ..... . . . ...... . . . . . . ... . . . . . .... . . . . .... . . . ... . . . .. . . .. ... .............. . . ..... .. . ...... . . .... . . . .. . .. . .
lowQualScore : 7 2 0 111 55 666666666 0 88888888888888888 666666 22 2 99999 5 4 0 222222 7 5 2 2 0 0 555 0 0 0 5 3 3333 3 3 7 3 7777 7 0 3 333 3 0 3 00 0 3 33 333 77777777777777 3 0 33333 33 3 000000 0 7 0000 0 0 0 55 0 00 0 0
consensus : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTAT-ATA-----G-T-TTA-CCCTC---T----------CA---T--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGGACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
Reference ( family-1660 ) : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTAT-ATA-----G-T-TTA-CCCTC---T----------CA---T--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGGACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
gi|1 : TTATTAGAGCCC-TACCAGTTTCACCGGA-GG-A-ACTAT--TA-----G-T-TTA-CCCTC--------------CA---T--CTGGC-ATCCGTTTGTT----TGGAAACATTTCTCAAAA-AGTATCCAAAC------TAGGTTTTTGAAACTTTGTATGTGGATAGAGCGCAATAAGGAAATATTGCAGGTCATTTTATTTTTTCATTCGGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCAAAGCTAGGTTTGTGAAAC-T-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTT-T-TT-TTCAGTCTGACAGGAAT-----------ATGGCAACAAAATAAGT-AAATTACAGATACAACC-AGATTCAT-GTGATAACACAAGAAGTATGCAAGCTACTTTTGTGAAACTTTGCAT-----ATAGA----AATAAG-GACATCATATAGATCCTTT-----AATTAGTTT--TC---CA------GTGAATGTTATGGTAACAAAATTGGTAAAATTACAAATAGAACCTGGGTCTTACATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGAACAA-AATTGGTAAAAATATATTAATACAACCTGGATCCTACAAGAACTCGGAAAGTATTCAAGCT
gi|10 : atTCAAAA-AGAATCCATAC------TAGGTTTGC---------C---TGGATAGAGAGCAATAAGAAAAGAATGCAGGTTGATTTATTTG-ACAGTCTGATAg
gi|11 : TTATTAGTCCCCCTACTGGTTCCACCGGATGG-A-ACTAT-ATA-------T-TAA-CCTTC---TGTT-------CA---T--TGGGC-ATAC---TGTC----TGGAAAGATTg
gi|12 : GGACAACAATTGGTAAAATTACA--GTTACAATCTGGATCCTGTACTAACACAAAATGTGTCCAAGt
gi|14 : tgtaagttGAAAGATTTCTAAAAC-AGTGTCCAAGC------TTATTTTGTGAAACTTTATATG
gi|2 : aCCAAACTACATTTGTGTTTCTT-ACCATGTGGATAGAGGGCA-AAAAGGAGATAATGCAGGTCATTTTAT-TTATTCAGTCAGACAAAAATTGTGGTTG-CCATAGTAACAAA-TGGGTAAAATTGAATATACAACCTGGATCCTTCGT--TAACACAATTTGTATCCAAGCTGCATTTGTGAAACTTAGCAT-GTAAATAGAGTGCAATAAATGAAGTCATGCACATCATTTAAAAAAAATAATTCAGTCGGAC-AAAATTGTGGTTGCCGTGGCATCGAAATACGTAGGA----AAATACAACCTGGATCCTGCAccaacaaaa
gi|3 : aacatttttaatgatggcAAACTTTGT-ATGTGGATAGAGGGCAATAA-GGAGATAATTCAGGTCATTTTATATG-TTCAGTTGGACACAAATTGTGGTTGGT-ATGGCAACAAAAGCGGTAAAATTACAGATACAAAC-TGAATCCT-GTGGTAACACAAAACATATCCAAGTTACATTTGTGAAACATTGCATGG-GGATA---------AAG-GAGATAATACAGGTTATTT-----TATT-TTTCAGTCTGACAAAAATTGTGGTTGGTATGGCATCAAAATTGGTAAAagaaaaccgaaagggaacctatgtattgctttgcaata
gi|4 : tactggtgggcATTAGTCCCC-TGTTGGTTTCACTGGAGGG-G-ACTGT-ACATGTATG-T-TTA-TCGTC--------------CAATGT--CTGGC-GTCCATCTGTT----GGGGGGG------------AATAT---AAC------TAACTT--TGAAAC--TGCACGTGGGAAGAGGGAAATATGGAGATAATGTAGtc
gi|5 : TTATTAGTCTCC-TACAAGTTTCACCAGA-AGAG-ACTAT--TA-----G-GGTTA-CG--------------------------TAGC-ATCTACCTGGC----AAGAAAGATTACTAAAAAAAGTATCCAAGCTACATGTAGGTTCGTGAAGCTTTGTATGTGAACAAA
gi|6 : ATTAGTCCCC-TACCAGATTCACAGAA-GG-C-ACTATTATA-----G-G-TTAACCCTC---TGTCCATCGAGCA---T--CTGGT-GTCTATCCGTCAGACCAGAAAGTTTACTTAAAA-AGTATCCAAGaa
gi|7 : ctgGTTTTATGGGA-GG-GGACTTT-TTG-----G-C-TTA-CCGTC---TTGCCAGC---CA---TGTCTGGC----CGTCAGTC----CGAAAAGAGCACTCAAAA-AGTATCTATGT------TAGGTTTGTCAAACGTTGCATGT
gi|8 : TTATTAGTCACT-TACCGGTTTCACTGGA-GT-G-GCTAT-ATA-----GAT-TTA-CGCTCCATT----------CA---T--CAGGC-GTCAATCCGTT----CGGAAGGATTACT
gi|9 : tggtagg-TAGCAGTTTCACCAGA-GG-A-A-TCT-ATA-----A-T-CTA-TCC-----------------A---T--CTGTCTGTCTGTCTATC----TGGAAATATTACTCAAAA-A
blockSeqs : C T AG TA TGTATGT A CTCTGTCCATCGAG ATGT TG A AGACC C A TACATG T G T T A A GA G T C C T ACC A A A TTA A A T CC A G A TG T C GG TTT GTAAATAGAGTGC T A AAAAA AA A TGACAA C . C C T . T CT A T
blockSeqs : . G GG A GGG . GTCTTGCCAGC TGT A A T A . . T G T A G T TGT . . A ATG G C T GT . C A T C . . AAC GGGGATA . G . T A GGACA G
blockSeqs : . . A A GAT . TTCTGTT T G A G A . . C G G C
blockSeqs : . . G T GG . CTCCATT T A G A T . . T C .
blockSeqs : . . C A GC . GTC T G A C C . . . . .
blockSeqs : . . G A AT . C T G G C C .
blockSeqs : . A . T . . . . . T . .
blockSeqCons : A* CTCCGC***********
originalCons : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTAT-ATA-----G-T-TTA-CCCTC---T----------CA---T--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGGACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
finalCons : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTATA-TA-----G-T-TTA-CCCTCCGC-----------CA---T--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGGACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTTAGTCTCCTACCAGTTTCAACAGAGGGGACTAAAGTTAAAACTTATTATCCGTATGTCTGGAAAGATT
Unaligned ( gi|15 ): ATTCCCAGAGGGGATTATAGGTGTACCCTCTGTCCGTCATGCATTCAGTGTCTATCT
Unaligned ( gi|16 ): ATTAGAGCCTAACCTGCGAGTTTCACCAAGGGAGACTATAGGTTTA
Alignments
lowQualScore : 1 11 111111111 555555555555555555555 11111 111111 111 1111 1 1 1111 333 11 1 11 44444444444444 1 33333 333333 2222 1 11
lowQualScore : 5 0 0 999 11 999999999 5 888888888888888888888 66 77 66 22222 0 1 5 999999 1 2 7 1 1 1 777 1 1 1 2 7 7777 3 3 0 7 6666 3 1 7 000 7 1 7 77 1 3 00 444 77777777777777 3 1 33333 88 7 777777 1 0 4444 1 5 1 88 1 22 1 1
lowQualScore : . . . ... .. ......... . ..................... .. .. .. ..... . . . ...... . . . . . . ... . . . . . .... . . . . .... . . . ... . . . .. . . .. ... .............. . . ..... .. . ...... . . .... . . . .. . .. . .
lowQualScore : 7 2 0 111 55 666666666 0 111111111111111111111 99 22 55 99999 5 4 0 222222 7 5 2 2 0 0 555 0 0 0 5 3 3333 3 3 7 3 7777 7 0 3 333 3 0 3 00 0 3 33 333 77777777777777 3 0 33333 33 3 000000 0 7 0000 0 0 0 55 0 00 0 0
consensus : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTAT-ATA-----G-T-TTA-CC--CT--CC-G-TC--------AT--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGGACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
Reference ( family-1660 ) : NNTTATTAGTCCCC-TACCGGTTTCACCGGA-GG-G-ACTAT-ATA-----G-T-TTA-CC--CT--CC-G-CC--------AT--CTGGC-GTCCGTCTGTC----CGGAAAGATTACTCAAAA-AGTATCCAAGC------TAGGTTTGTGAAACTTTGCATGTGGATAGAGNGCAATAAGGAAATAATGCAGGTCGNTTTATTTNTNCANTCNGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCNAAGCTACGTTTGTGAAACTT-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTTAT-TT-TTCAGTCGGACANAAATTGTGGTTG-C-ATGGCAACAAAATNGGTAAAATTACAGATACAACC-GGATTCNT-GTGGTAACACAANACGTATCCAAGCTACATTTGTGAAACTTTGCAT-G-GGATAGA----AATAAG-GANATCATACAGATCATTT-----AATTANTTCAGTC-GACAAAAATTGTGGTTGNTATGGCATCGAAATTGGTAAAATTACAAATANAACCTGGGTCCTGCATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGGACAACAATTGGTAAAANTACATTGNTACAACCTGGATCCTGCANNAACNCGGAANGTGTCCAAGCT
gi|1 : TTATTAGAGCCC-TACCAGTTTCACCGGA-GG-A-ACTAT--TA-----G-T-TTA-CC--CT--CC-------------AT--CTGGC-ATCCGTTTGTT----TGGAAACATTTCTCAAAA-AGTATCCAAAC------TAGGTTTTTGAAACTTTGTATGTGGATAGAGCGCAATAAGGAAATATTGCAGGTCATTTTATTTTTTCATTCGGACAAAAATGTGGTTAATATGGCAACAAAACACTCTCTGTTGTCCAGAAATATTGCTCAAAAAGTCGCAAAGCTAGGTTTGTGAAAC-T-GC-ATGTGGATAGAGGGCA-TAA-GGAGATAATGCAGGTCGTTTT-T-TT-TTCAGTCTGACAGGAAT-----------ATGGCAACAAAATAAGT-AAATTACAGATACAACC-AGATTCAT-GTGATAACACAAGAAGTATGCAAGCTACTTTTGTGAAACTTTGCAT-----ATAGA----AATAAG-GACATCATATAGATCCTTT-----AATTAGTTT--TC---CA------GTGAATGTTATGGTAACAAAATTGGTAAAATTACAAATAGAACCTGGGTCTTACATCACAAACATTTGTGAAACTTTGCATGTGAAAAGAGAGCAATAAGAATATCATGCATCTCATTTAATTATTTTTAAAATTGGAAAAAAATTGTGGTTGCTATGGGAACAA-AATTGGTAAAAATATATTAATACAACCTGGATCCTACAAGAACTCGGAAAGTATTCAAGCT
gi|10 : atTCAAAA-AGAATCCATAC------TAGGTTTGC---------C---TGGATAGAGAGCAATAAGAAAAGAATGCAGGTTGATTTATTTG-ACAGTCTGATAg
gi|11 : TTATTAGTCCCCCTACTGGTTCCACCGGATGG-A-ACTAT-ATA-------T-TAA-CC--TT--CT-GTTC--------AT--TGGGC-ATA---CTGTC----TGGAAAGATTg
gi|12 : GGACAACAATTGGTAAAATTACA--GTTACAATCTGGATCCTGTACTAACACAAAATGTGTCCAAGt
gi|14 : tgtaagttGAAAGATTTCTAAAAC-AGTGTCCAAGC------TTATTTTGTGAAACTTTATATG
gi|2 : aCCAAACTACATTTGTGTTTCTT-ACCATGTGGATAGAGGGCA-AAAAGGAGATAATGCAGGTCATTTTAT-TTATTCAGTCAGACAAAAATTGTGGTTG-CCATAGTAACAAA-TGGGTAAAATTGAATATACAACCTGGATCCTTCGT--TAACACAATTTGTATCCAAGCTGCATTTGTGAAACTTAGCAT-GTAAATAGAGTGCAATAAATGAAGTCATGCACATCATTTAAAAAAAATAATTCAGTCGGAC-AAAATTGTGGTTGCCGTGGCATCGAAATACGTAGGA----AAATACAACCTGGATCCTGCAccaacaaaa
gi|3 : aacatttttaatgatggcAAACTTTGT-ATGTGGATAGAGGGCAATAA-GGAGATAATTCAGGTCATTTTATATG-TTCAGTTGGACACAAATTGTGGTTGGT-ATGGCAACAAAAGCGGTAAAATTACAGATACAAAC-TGAATCCT-GTGGTAACACAAAACATATCCAAGTTACATTTGTGAAACATTGCATGG-GGATA---------AAG-GAGATAATACAGGTTATTT-----TATT-TTTCAGTCTGACAAAAATTGTGGTTGGTATGGCATCAAAATTGGTAAAagaaaaccgaaagggaacctatgtattgctttgcaata
gi|4 : tactggtgggcATTAGTCCCC-TGTTGGTTTCACTGGAGGG-G-ACTGT-ACATGTATG-T-TTA-TC--GT--CC-A-AT--------GT--CTGGC-GTCCATCTGTT----GGGGGGG------------AATAT---AAC------TAACTT--TGAAAC--TGCACGTGGGAAGAGGGAAATATGGAGATAATGTAGtc
gi|5 : TTATTAGTCTCC-TACAAGTTTCACCAGA-AGAG-ACTAT--TA-----G-GGTTA-C----------G----------------TAGC-ATCTACCTGGC----AAGAAAGATTACTAAAAAAAGTATCCAAGCTACATGTAGGTTCGTGAAGCTTTGTATGTGAACAAA
gi|6 : ATTAGTCCCC-TACCAGATTCACAGAA-GG-C-ACTATTATA-----G-G-TTAACC--CT--CT-G-TCCATCGAGCAT--CTGGT-GTCTATCCGTCAGACCAGAAAGTTTACTTAAAA-AGTATCCAAGaa
gi|7 : ctgGTTTTATGGGA-GG-GGACTTT-TTG-----G-C-TTA-CCGTCTTGCCAG-CC--------ATGTCTGGC----CGTCAGTC----CGAAAAGAGCACTCAAAA-AGTATCTATGT------TAGGTTTGTCAAACGTTGCATGT
gi|8 : TTATTAGTCACT-TACCGGTTTCACTGGA-GT-G-GCTAT-ATA-----GAT-TTA-CG--CT--CC-ATTC--------AT--CAGGC-GTCAATCCGTT----CGGAAGGATTACT
gi|9 : tggtagg-TAGCAGTTTCACCAGA-GG-A-A-TCT-ATA-----A-T-CTA-TC--C------------------AT--CTGTCTGTCTGTCTATC----TGGAAATATTACTCAAAA-A
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGTTAGTCTCCTACCAGTTTCAACAGAGGGGACTAAAGTTAAAACTTATTATCCGTATGTCTGGAAAGATT
Unaligned ( gi|15 ): ATTCCCAGAGGGGATTATAGGTGTACCCTCTGTCCGTCATGCATTCAGTGTCTATCT
Unaligned ( gi|16 ): ATTAGAGCCTAACCTGCGAGTTTCACCAAGGGAGACTATAGGTTTA