lowQualScore : 111 111111111 1111 11 3333333 11
lowQualScore : 1 222 2 33 000000000 33 2 2222 44 44 44 6666 3 8 3333333 2 2 2 2 1 6 5 2 6666 2 33 7 2 3 33 6 5 44 0 2 44 3
lowQualScore : . ... . .. ......... .. . .... .. .. .. .... . . ....... . . . . . . . . .... . .. . . . .. . . .. . . .. .
lowQualScore : 9 999 9 44 000000000 44 7 7777 22 22 55 5555 1 6 1111111 9 9 9 9 4 0 3 1 5555 9 99 5 9 3 00 8 2 66 1 5 66 2
consensus : TGCATACTCCATCCGCTTTTTTATGGGTGGATT---TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAA--CACTCATA-TTG----AT--TAAAATATG--TA-ATATC----A-TT-AGCAAAANNT----CTTACCG-GTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTNAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCA-CCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
Reference ( gi|4 ) : TGCATACTCCATTCGCTTTTTTATGGGTGGATT---TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAA--CACTCATA-TTG----AT--TAAAATATG--TG-ATATC----A-TT-AGCAAAATAT----CTTACCG-GTTGTT-AAAAAAA-CA-CTTTATATACGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TTTTTG-ACAGTTATCACGTGACGCGCA-CTGTTTAAACGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|1 : TGCATACTCCATTCGCTTTTTAATGGGTGGATT---TTTCCGCACCGATTTCA--GTG---------CGGAAGCCAAAA--CACTCATA-TTG----AT--TAAAATATG--TA-ATATC----A-TT-AGCAAAAACT----CTTACCG-GTTGTT-AAAAAAA-CA-TTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAATATTTAACTTAGTTTTTACATACAATCCTACTGTCAAAATCG--TTTTTG-ACAGTTATCACGTGACGCGCA-CCGTCCAAGCGTCA--TAACGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGC
gi|5 : TGCATACTCCATTCGCTTTTTTACGGGTGGATT---TT-CCACACCAATTTCA--GTG---------CTGAGGCCAAAA--CACTCTTA-TTG----AT--TAAAATATG--TA-ATATC----A-TT-TGCAAAAACT----CTTACCG-GTTGTT-AAAAAAA-CA-CTTAACATATGTCCATAACGA-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-TAATCC--TTTTTG-ACAGTTATCACGTGACGCGCA-CTGTTCAAGCGTCA--TAGCGATTTGAATAGAAACGCTGTGATGGAAGCTCTACGCGTTAAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|3 : TGCGTACTCCATCCGCATTTT-ATGGGTGGATT---TT-CCGCACCGATTTCA--GTG---------CGGAAGCC-AAA--CACTAATA-TTG----AT--TAAAATATG--TA-ATATC----A-TT-AGCAAAAACT----TTTACCG-GTTGTTAAAAAAAA-CA-ATTTATATATGTCCATAACGT-AAAAATATCCATAAAACCGCACATTTAACACATAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTA-ACAGTTATCATGTGACGCGCA-CCTTTCAAGCGTCATGTAGCGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAATGCAATATTTATCAGG--GTAGGCAAATACGCA
gi|6 : TGCATGCTCTATCAGCTTTTTTATGGGTGGATT---TT-CCGCACTGATTTCA--GTG---------CGGAAGCCAAAC--CACTCATA-ATG----AT--TAAAATATG--TA-AAATC----A-TT-AGCAAAAACC----CTTACCG-GTTGTA-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTATA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTCG-ATAGTTATCACGTGATGCACA-CCTTTCAAGCGTCA--TAGCAATTTGAATAGAAACACTGTGATGAAAGCTCTAAGAGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCATTTACG
gi|7 : TGCATACTCCATCTGCTTTTTTATGGGTGGATT---TT-CCGCACCAATTTCA--GTG---------CAGAAGCCAAAA--CACTCAT---TG----AT--TAAAATATG--TA-ATATC----A-T------AAAC-T----CTTACCG-GTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAATGT-AAAAATATCCACAAAACCGCACATTTGACACTTTAA----TAACTTA-TTTTTACATACAATCCTACATTC-TAATCG--TGTTTG-ACAGTTATCACATGACGCGCA-CCTTTCAAGCGTCA--TAGCGATTGGAATAGAGACACTGTGATGGAAGCTTTACGCGATTAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|8 : TGCATACTCCATTTGCTTTTTTATGGGTGGATT---TT-CTGCACCGATTTCA--GTG---------CGGAAGCCAAAA--CACTCCTA-TTG----AT--TAAAATATG--TA-ATATCATTAA-TT-AGCAAA-------------CG-GTTGTT-AAATAAA-CA-CTTTATATATGTCCATAACGTAAAAAATATCCACAAAACAGCAAATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTC-AAATCGTTTTTTTG-ACAGTTATCACGTGACGCGCA-CCTTTCAAGCGTCA--CAATGATTTGAATAG-AACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATATTTA
gi|2 : TGCATAGTCCATCCGCTTTTTCATAGGTGGATT---TT-CAGCACCGATTTCA--GTG---------CGGAAGTCAAAA--CACTCATT-TTTTTTTAT--TTAAATATG--T--ATATA----AATG-GGAAAAATA-----CTTACCA-ATTGTT-AAAAAAA-TA-CTTTATTTATGTCCATATTGC-AAAAATATCCACAAAACCGCACATTAAGCACTTAAA----CAACTAAGTATTTACATACAATCCTACTTTC-AAATCG--TCATAG-ACAGTTATCACGTGAAGCACA-CCTTTCAAACGTCA--TAGCGATTTGAATAGAAACACTGCGGTGGAAGCTCTACGCGGTAAATTGGAAAGACAATACTTGTGAGG--GAAGGCAAATACGCA
gi|10 : TGCATACTCCATCCGCTTTTTTATGGGTGGATT---TT-CTGCACCGATTTCA--GCG---------TGGAAGCCAAAA--CACTCATA-TTG----AT----AAATATG--TA-ATATC----T-TT-AGCAAAAACT----CTTACCG-GTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AA
gi|15 : GCATAGTCCATCCACATTTTTATGGGTGGATT---TT-CTACAC-GATTTCA--GTG---------CGGAAGCTAAAA--CACTCATATTTT----AT--TAAAATATG---G-ATATA----A-TTGAGAAAAACA-----CTTACCG-GTTGTT-TAAAAAA-TA-CTTTATTTATGTCCATAACAT-AAAAATATCCACAAAATCGCACATTAAACACTTAAA----CAA-TTAGTTTTTACATACAATCCTACTTTC-AAATCA--TGTTTG-ACAGTTATCACctttcaaatcgtgtctatacagttatcacgtgacgcgcacctttcaagcgtcatagcgatttgaatagaaacactgtgatggaagctctacgcggtaagttagaaaggcaatacttatcagggtaggcaaatacgca
gi|14 : CATAGTCCATCAGCTTTTTCATGGGTGGATC---TT-CTGCACCGATTTCA--GTGATTTCAGTGCGGAAGCCAAAA--CACTCATA-TTT----ATATTAAATCATC--T--ATAAT----A-TT-GACAAAA-AC----ACTAGCAAGTTGTT-AAAAATA-TA-CTTTATTTATATCTATAACGT-AAAAATATCAAAAAATACACACATTAAACATTTAAA----CAACTTAGTTTTTACACA----CCTACTTTC-AAATCG--TGTTTT-ACAGTTATC
gi|11 : aTAGTCCATCCACTATTTTATTGGTGGATTC--TT-CAGCACCGATTTCA--GTG---------CGGAAGCCAAAA--CACTCATT-TTTT---AT--TAAAATATGACTGTATATA----A-TTGAGAAAAACA-----CTTACTG-ATTGTT-AAAAAAA-TA-CTTTATTTATGTCTATAACAT-AAAAATATCCACAAAACTACAAATTAAACACTTTAG----CAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTTG-ACAGTTATCACATGATGCGCACCTG-TCAATCGACA--TAGCGATTTGAATAGGAACAC
gi|6 : TTATGAGTGGTTTGGCTT-CCGCACTGAAATCA--GTG---------CGGAA---AATC--CACCCATA-
gi|1 : tgcatgctctatcagctttttTATGAGTGTTTTGGCTT-CCGCACTGAAATCG--GTG---------CGGA----AAAATCCACCCATtgattaaaatatgtaaaatcattagcaaaaacccttaccggttgtaaaaaaaacactttatatatgtccataacgtaaaaatatccacaaaaccgcacatttaacacttatataacttagtttttacatacaatcctactttcaaattgtgttcgatagttatcacgtgatgcacacctttcaagcgtcatagcaatttgaatagaaacactgtgatgaaagctctaagaggtaaattggaaaggcaatacttatcagggtaggcatttacg
gi|3 : tgcatactccattcgcttttta---TT-CCGCACTGAAATCG--GTG---------CGGAA---AATC--CACCCATA-ttgattaaaatatgtaatatcattagcaaaaactcttaccggttgttaaaaaaacattttatatatgtccataacgtaaaaatatccacaaaaccgcacatttaacacttaaatatttaacttagtttttacatacaatcctactgtcaaaatcgtttttgacagttatcacgtgacgcgcaccgtccaagcgtcataacgatttgaatagaaatactgtgatggaagctctacgcggtaaattggaaaggcaatacttatcagggtaggcaaatacgc
gi|9 : tgcgtactccatccgcatttTTTCATGGTG---------CGGAAGCTAAAA--CACTGATT-TTTT---AT--TAAAATATG--T--ATATA----A-TTGAGAAAAACA-----CTTACCG-GTTGTT-AAAAAAAACAACTTTATTTATGTCCATTTCGT-AAAAATATCCACAAAACCACCTATTAAGCACTTAAA----CAACTTAGTTTTTACATACAATCCTACTTTT-AAATCA--TGTTTG-A-------CATGTGAAGGGTC-CCTTTCAAATGTCA--TAGCGATTTTAATAGAAACACTGTTGTGGAAGCTCTACACGGTAAATTGGAAAGGCAATACTTGTGAGG--GAAGGCAAATACACAgccaaacactaatattgattaaaatatgtaatatcattagcaaaaacttttaccggttgttaaaaaaaacaatttatatatgtccataacgtaaaaatatccataaaaccgcacatttaacacataaataacttagtttttacatacaatcctactttcaaatcgtgtttaacagttatcatgtgacgcgcacctttcaagcgtcatgtagcgatttgaatagaaatactgtgatggaagctctacgcggtaaattggaaatgcaatatttatcagggtaggcaaatacgca
gi|12 : TTTCT--GTG---------CCGAAGCCAAAA--CTCTCGTA-TTG----AT--TAAAATATG--TA-ATAAC----A-TT-AGCAAAAACT----CTTACCG-GTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAAACATACATTTAACACTTCAA----TCATGTAGTTTTAATATACACTCCTAC-TTC-AA---------------AGTTATCCCGTGACGCACA-CCTTTCAAGCATCA--TAGAGATTCAAATAGAAAC-----------AGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGTA
gi|13 : tT-GGCGAAATATTTCTCTTACCG-GTTGTT-AAATAAA-CA-CTTTATATATGTCTATAACGTAAAAAATATCCACAAAACAGCACATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTT-GAATCG--TTTTTG-ACAGTTATCAC----------------------------AGCGATTTGAATAG-AACACTGTGATGGAAGCTCGACGCGGTAAATTGGAAAGGCAATATTTAT
gi|19 : agtgtgtttgtcaagttgaaatcggaccctggtcttggtatgttacaagaTTATTTATGTCCATAACGT-TAAA-TATCCACAAAAACGCACTTTAAACACTT
gi|10 : ACTTTC-AAATCG--TGTCTATACAGTTATCACGTGACGCGCA-CCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAGTTAGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|16 : tgcatactccatccgcttttttatgggtggattttctgcaccgatttcagcgtggaagccaaaacactcatattgataaatatgtaatatctttagcaaaaactcttaccggttgttaaaaaaacactttatatatgtccataacgtaTAGAAGCACTGCCGTGGAAGTTCTACTTGGTAAATGGGAAAGGCAATACTTGTGGGT--GTAGGC-AATACACA
gi|17 : TAGAAACACTGAG-TGGAAGTTCTACTTTGTAAATGGGAAAGGCAATACTTGT--GGATGTAGGC-AATACACA
gi|18 : AGTTCTAATTGGTAAATGGGAAAGGCAGTACTTATGGGT--GTAGGC-AATACACA
Alignments
lowQualScore : 111111111 1111 1111111
lowQualScore : 3 3 33 111111111 22 1111 33 33 33 2 66666 0 1111111 2 2 2 0 5 1 6666 2 33 1 2 44 1 44 2
lowQualScore : . . .. ......... .. .... .. .. .. . ..... . ....... . . . . . . .... . .. . . .. . .. .
lowQualScore : 3 3 99 444444444 99 8888 99 99 99 9 88888 3 8888888 7 7 7 8 0 0 1111 7 77 7 7 22 5 22 3
consensus : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAAACT----CTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
Reference ( family-1601 ) : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAANNT----CTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTNAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|1 : TGCATACTCCATTCGCTTTTTAATGGGTGGATT-TTTCCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAAACT----CTTACCGGTTGTT-AAAAAAA-CA-TTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAATATTTAACTTAGTTTTTACATACAATCCTACTGTCAAAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACCGTCCAAGCGTCA--TAACGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGC
gi|10 : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GCG---------TGGAAGCCAAAACACTCATA-TTG----AT----AA--ATATG--TA-ATATC----TTTAGCAAAAACT----CTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AA
gi|10 : ACTTTC-AAATCG--TGTCTATACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAGTTAGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCActttcaaatcgtgtctatacagttatcacgtgacgcgcacctttcaagcgtcatagcgatttgaatagaaacactgtgatggaagctctacgcggtaagttagaaaggcaatacttatcagggtaggcaaatacgca
gi|11 : tgcatactccatccgcttttttatgggtggattttctgcaccgatttcagcgtggaagccaaaacactcatattgataaatatgtaatatctttagcaaaaactcttaccggttgttaaaaaaacactttatatatgtccataacgtaTAGTCCATCCACTATTTTATTGGTGGATTCTT-CAGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATT-TTTT---AT--TAAA--ATATGACTGTATATA----ATTGAGAAAAACA----CTTACTGATTGTT-AAAAAAA-TA-CTTTATTTATGTCTATAACAT-AAAAATATCCACAAAACTACAAATTAAACACTTTAG----CAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTTG-ACAGTTATCACATGATGCGCACCTGTCAATCGACA--TAGCGATTTGAATAGGAACAC
gi|12 : TTTCT--GTG---------CCGAAGCCAAAACTCTCGTA-TTG----AT--TAAA--ATATG--TA-ATAAC----ATTAGCAAAAACT----CTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAAACATACATTTAACACTTCAA----TCATGTAGTTTTAATATACACTCCTAC-TTC-AA---------------AGTTATCCCGTGACGCACACCTTTCAAGCATCA--TAGAGATTCAAATAGAAAC-----------AGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGTA
gi|13 : tTGGCGAAATATTTCTCTTACCGGTTGTT-AAATAAA-CA-CTTTATATATGTCTATAACGTAAAAAATATCCACAAAACAGCACATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTT-GAATCG--TTTTTG-ACAGTTATCAC---------------------------AGCGATTTGAATAG-AACACTGTGATGGAAGCTCGACGCGGTAAATTGGAAAGGCAATATTTAT
gi|14 : agtgtgtttgtcaagttgaaatcggaccctggtcttggtatgttacaagaCATAGTCCATCAGCTTTTTCATGGGTGGATC-TT-CTGCACCGATTTCA--GTGATTTCAGTGCGGAAGCCAAAACACTCATA-TTT----ATATTAAATCATCTA--TA-ATAT-------TGACAAAAACA----CTAGCAAGTTGTT-AAAAATA-TA-CTTTATTTATATCTATAACGT-AAAAATATCAAAAAATACACACATTAAACATTTAAA----CAACTTAGTTTTTACACA----CCTACTTTC-AAATCG--TGTTTT-ACAGTTATC
gi|15 : aGCATAGTCCATCCACATTTTTATGGGTGGATT-TT-CTACAC-GATTTCA--GTG---------CGGAAGCTAAAACACTCATATTTT----AT--TAAA--ATATG---G-ATATA----ATTGAGAAAAACA----CTTACCGGTTGTT-TAAAAAA-TA-CTTTATTTATGTCCATAACAT-AAAAATATCCACAAAATCGCACATTAAACACTTAAA----CAA-TTAGTTTTTACATACAATCCTACTTTC-AAATCA--TGTTTG-ACAGTTATCAC
gi|16 : TAGAAGCACTGCCGTGGAAGTTCTACTTGGTAAATGGGAAAGGCAATACTTGTGGGT--GTAGGC-AATACACA
gi|17 : TAGAAACACTGAG-TGGAAGTTCTACTTTGTAAATGGGAAAGGCAATACTTGT--GGATGTAGGC-AATACACA
gi|18 : AGTTCTAATTGGTAAATGGGAAAGGCAGTACTTATGGGT--GTAGGC-AATACACA
gi|19 : TTATTTATGTCCATAACGT-TAAA-TATCCACAAAAACGCACTTTAAACACTT
gi|2 : TGCATAGTCCATCCGCTTTTTCATAGGTGGATT-TT-CAGCACCGATTTCA--GTG---------CGGAAGTCAAAACACTCATT-TTTTTTTAT--TTAA--ATATG--TA--TATA----AATGGGAAAAATA----CTTACCAATTGTT-AAAAAAA-TA-CTTTATTTATGTCCATATTGC-AAAAATATCCACAAAACCGCACATTAAGCACTTAAA----CAACTAAGTATTTACATACAATCCTACTTTC-AAATCG--TCATAG-ACAGTTATCACGTGAAGCACACCTTTCAAACGTCA--TAGCGATTTGAATAGAAACACTGCGGTGGAAGCTCTACGCGGTAAATTGGAAAGACAATACTTGTGAGG--GAAGGCAAATACGCA
gi|3 : TGCGTACTCCATCCGCATTTT-ATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCC-AAACACTAATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAAACT----TTTACCGGTTGTTAAAAAAAA-CA-ATTTATATATGTCCATAACGT-AAAAATATCCATAAAACCGCACATTTAACACATAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTA-ACAGTTATCATGTGACGCGCACCTTTCAAGCGTCATGTAGCGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAATGCAATATTTATCAGG--GTAGGCAAATACGCA
gi|4 : TGCATACTCCATTCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TG-ATATC----ATTAGCAAAATAT----CTTACCGGTTGTT-AAAAAAA-CA-CTTTATATACGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTTAAACGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|5 : TGCATACTCCATTCGCTTTTTTACGGGTGGATT-TT-CCACACCAATTTCA--GTG---------CTGAGGCCAAAACACTCTTA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTTGCAAAAACT----CTTACCGGTTGTT-AAAAAAA-CA-CTTAACATATGTCCATAACGA-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-TAATCC--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTCAAGCGTCA--TAGCGATTTGAATAGAAACGCTGTGATGGAAGCTCTACGCGTTAAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|6 : TGCATGCTCTATCAGCTTTTTTATGGGTGGATT-TT-CCGCACTGATTTCA--GTG---------CGGAAGCCAAACCACTCATA-ATG----AT--TAAA--ATATG--TA-AAATC----ATTAGCAAAAACC----CTTACCGGTTGTA-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTATA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTCG-ATAGTTATCACGTGATGCACACCTTTCAAGCGTCA--TAGCAATTTGAATAGAAACACTGTGATGAAAGCTCTAAGAGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCATTTACG
gi|7 : TGCATACTCCATCTGCTTTTTTATGGGTGGATT-TT-CCGCACCAATTTCA--GTG---------CAGAAGCCAAAACACTCAT---TG----AT--TAAA--ATATG--TA-ATATC----AT------AAACT----CTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAATGT-AAAAATATCCACAAAACCGCACATTTGACACTTTAA----TAACTTA-TTTTTACATACAATCCTACATTC-TAATCG--TGTTTG-ACAGTTATCACATGACGCGCACCTTTCAAGCGTCA--TAGCGATTGGAATAGAGACACTGTGATGGAAGCTTTACGCGATTAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|8 : TGCATACTCCATTTGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCCTA-TTG----AT--TAAA--ATATG--TA-ATATCATTAATTAGCAAA-------------CGGTTGTT-AAATAAA-CA-CTTTATATATGTCCATAACGTAAAAAATATCCACAAAACAGCAAATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTC-AAATCGTTTTTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--CAATGATTTGAATAG-AACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATATTTA
gi|9 : TTTCATGGTG---------CGGAAGCTAAAACACTGATT-TTTT---AT--TAAA--ATATG--TA--TATA----ATTGAGAAAAACA----CTTACCGGTTGTT-AAAAAAAACAACTTTATTTATGTCCATTTCGT-AAAAATATCCACAAAACCACCTATTAAGCACTTAAA----CAACTTAGTTTTTACATACAATCCTACTTTT-AAATCA--TGTTTG-A-------CATGTGAAGGGTCCCTTTCAAATGTCA--TAGCGATTTTAATAGAAACACTGTTGTGGAAGCTCTACACGGTAAATTGGAAAGGCAATACTTGTGAGG--GAAGGCAAATACACA
Alignments
lowQualScore : 111111111 1111
lowQualScore : 3 3 33 111111111 22 1111 33 33 33 2 66666 0 2 444 2 2 2 2 0 5 1 6666 2 33 1 2 44 1 44 2
lowQualScore : . . .. ......... .. .... .. .. .. . ..... . . ... . . . . . . . .... . .. . . .. . .. .
lowQualScore : 3 3 99 444444444 99 8888 99 99 99 9 88888 8 7 777 3 7 7 7 8 0 4 1111 7 77 7 7 22 5 22 3
consensus : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
Reference ( family-1601 ) : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|1 : TGCATACTCCATTCGCTTTTTAATGGGTGGATT-TTTCCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-TTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAATATTTAACTTAGTTTTTACATACAATCCTACTGTCAAAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACCGTCCAAGCGTCA--TAACGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGC
gi|10 : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GCG---------TGGAAGCCAAAACACTCATA-TTG----AT----AA--ATATG--TA-ATATC----TTTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AA
gi|10 : ACTTTC-AAATCG--TGTCTATACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAGTTAGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCActttcaaatcgtgtctatacagttatcacgtgacgcgcacctttcaagcgtcatagcgatttgaatagaaacactgtgatggaagctctacgcggtaagttagaaaggcaatacttatcagggtaggcaaatacgca
gi|11 : tgcatactccatccgcttttttatgggtggattttctgcaccgatttcagcgtggaagccaaaacactcatattgataaatatgtaatatctttagcaaaaactcttaccggttgttaaaaaaacactttatatatgtccataacgtaTAGTCCATCCACTATTTTATTGGTGGATTCTT-CAGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATT-TTTT---AT--TAAA--ATATGACTGTATATA----ATTGAGAAAA-A---CACTTACTGATTGTT-AAAAAAA-TA-CTTTATTTATGTCTATAACAT-AAAAATATCCACAAAACTACAAATTAAACACTTTAG----CAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTTG-ACAGTTATCACATGATGCGCACCTGTCAATCGACA--TAGCGATTTGAATAGGAACAC
gi|12 : TTTCT--GTG---------CCGAAGCCAAAACTCTCGTA-TTG----AT--TAAA--ATATG--TA-ATAAC----ATTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAAACATACATTTAACACTTCAA----TCATGTAGTTTTAATATACACTCCTAC-TTC-AA---------------AGTTATCCCGTGACGCACACCTTTCAAGCATCA--TAGAGATTCAAATAGAAAC-----------AGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGTA
gi|13 : tTGGCGAAATATTTCTCTTACCGGTTGTT-AAATAAA-CA-CTTTATATATGTCTATAACGTAAAAAATATCCACAAAACAGCACATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTT-GAATCG--TTTTTG-ACAGTTATCAC---------------------------AGCGATTTGAATAG-AACACTGTGATGGAAGCTCGACGCGGTAAATTGGAAAGGCAATATTTAT
gi|14 : agtgtgtttgtcaagttgaaatcggaccctggtcttggtatgttacaagaCATAGTCCATCAGCTTTTTCATGGGTGGATC-TT-CTGCACCGATTTCA--GTGATTTCAGTGCGGAAGCCAAAACACTCATA-TTT----ATATTAAATCATCTA--TA-ATAT-------TGACAAAA-A---CACTAGCAAGTTGTT-AAAAATA-TA-CTTTATTTATATCTATAACGT-AAAAATATCAAAAAATACACACATTAAACATTTAAA----CAACTTAGTTTTTACACA----CCTACTTTC-AAATCG--TGTTTT-ACAGTTATC
gi|15 : aGCATAGTCCATCCACATTTTTATGGGTGGATT-TT-CTACAC-GATTTCA--GTG---------CGGAAGCTAAAACACTCATATTTT----AT--TAAA--ATATG---G-ATATA----ATTGAGAAAA-A---CACTTACCGGTTGTT-TAAAAAA-TA-CTTTATTTATGTCCATAACAT-AAAAATATCCACAAAATCGCACATTAAACACTTAAA----CAA-TTAGTTTTTACATACAATCCTACTTTC-AAATCA--TGTTTG-ACAGTTATCAC
gi|16 : TAGAAGCACTGCCGTGGAAGTTCTACTTGGTAAATGGGAAAGGCAATACTTGTGGGT--GTAGGC-AATACACA
gi|17 : TAGAAACACTGAG-TGGAAGTTCTACTTTGTAAATGGGAAAGGCAATACTTGT--GGATGTAGGC-AATACACA
gi|18 : AGTTCTAATTGGTAAATGGGAAAGGCAGTACTTATGGGT--GTAGGC-AATACACA
gi|19 : TTATTTATGTCCATAACGT-TAAA-TATCCACAAAAACGCACTTTAAACACTT
gi|2 : TGCATAGTCCATCCGCTTTTTCATAGGTGGATT-TT-CAGCACCGATTTCA--GTG---------CGGAAGTCAAAACACTCATT-TTTTTTTAT--TTAA--ATATG--TA--TATA----AATGGGAAAA-A---TACTTACCAATTGTT-AAAAAAA-TA-CTTTATTTATGTCCATATTGC-AAAAATATCCACAAAACCGCACATTAAGCACTTAAA----CAACTAAGTATTTACATACAATCCTACTTTC-AAATCG--TCATAG-ACAGTTATCACGTGAAGCACACCTTTCAAACGTCA--TAGCGATTTGAATAGAAACACTGCGGTGGAAGCTCTACGCGGTAAATTGGAAAGACAATACTTGTGAGG--GAAGGCAAATACGCA
gi|3 : TGCGTACTCCATCCGCATTTT-ATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCC-AAACACTAATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAA-A---CTTTTACCGGTTGTTAAAAAAAA-CA-ATTTATATATGTCCATAACGT-AAAAATATCCATAAAACCGCACATTTAACACATAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTA-ACAGTTATCATGTGACGCGCACCTTTCAAGCGTCATGTAGCGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAATGCAATATTTATCAGG--GTAGGCAAATACGCA
gi|4 : TGCATACTCCATTCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TG-ATATC----ATTAGCAAAA-T---ATCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATACGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTTAAACGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|5 : TGCATACTCCATTCGCTTTTTTACGGGTGGATT-TT-CCACACCAATTTCA--GTG---------CTGAGGCCAAAACACTCTTA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTTGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTAACATATGTCCATAACGA-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-TAATCC--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTCAAGCGTCA--TAGCGATTTGAATAGAAACGCTGTGATGGAAGCTCTACGCGTTAAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|6 : TGCATGCTCTATCAGCTTTTTTATGGGTGGATT-TT-CCGCACTGATTTCA--GTG---------CGGAAGCCAAACCACTCATA-ATG----AT--TAAA--ATATG--TA-AAATC----ATTAGCAAAA-A---CCCTTACCGGTTGTA-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTATA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTCG-ATAGTTATCACGTGATGCACACCTTTCAAGCGTCA--TAGCAATTTGAATAGAAACACTGTGATGAAAGCTCTAAGAGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCATTTACG
gi|7 : TGCATACTCCATCTGCTTTTTTATGGGTGGATT-TT-CCGCACCAATTTCA--GTG---------CAGAAGCCAAAACACTCAT---TG----AT--TAAA--ATATG--TA-ATATC----AT------AA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAATGT-AAAAATATCCACAAAACCGCACATTTGACACTTTAA----TAACTTA-TTTTTACATACAATCCTACATTC-TAATCG--TGTTTG-ACAGTTATCACATGACGCGCACCTTTCAAGCGTCA--TAGCGATTGGAATAGAGACACTGTGATGGAAGCTTTACGCGATTAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|8 : TGCATACTCCATTTGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCCTA-TTG----AT--TAAA--ATATG--TA-ATATCATTAATTAGCAAA-------------CGGTTGTT-AAATAAA-CA-CTTTATATATGTCCATAACGTAAAAAATATCCACAAAACAGCAAATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTC-AAATCGTTTTTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--CAATGATTTGAATAG-AACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATATTTA
gi|9 : TTTCATGGTG---------CGGAAGCTAAAACACTGATT-TTTT---AT--TAAA--ATATG--TA--TATA----ATTGAGAAAA-A---CACTTACCGGTTGTT-AAAAAAAACAACTTTATTTATGTCCATTTCGT-AAAAATATCCACAAAACCACCTATTAAGCACTTAAA----CAACTTAGTTTTTACATACAATCCTACTTTT-AAATCA--TGTTTG-A-------CATGTGAAGGGTCCCTTTCAAATGTCA--TAGCGATTTTAATAGAAACACTGTTGTGGAAGCTCTACACGGTAAATTGGAAAGGCAATACTTGTGAGG--GAAGGCAAATACACA
Alignments
lowQualScore : 111111111 1111
lowQualScore : 3 3 33 111111111 22 1111 33 33 33 2 66666 0 2 444 2 2 2 2 0 5 1 6666 2 33 1 2 44 1 44 2
lowQualScore : . . .. ......... .. .... .. .. .. . ..... . . ... . . . . . . . .... . .. . . .. . .. .
lowQualScore : 3 3 99 444444444 99 8888 99 99 99 9 88888 8 7 777 3 7 7 7 8 0 4 1111 7 77 7 7 22 5 22 3
consensus : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
Reference ( family-1601 ) : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|1 : TGCATACTCCATTCGCTTTTTAATGGGTGGATT-TTTCCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-TTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAATATTTAACTTAGTTTTTACATACAATCCTACTGTCAAAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACCGTCCAAGCGTCA--TAACGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGC
gi|10 : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GCG---------TGGAAGCCAAAACACTCATA-TTG----AT----AA--ATATG--TA-ATATC----TTTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AA
gi|10 : ACTTTC-AAATCG--TGTCTATACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAGTTAGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCActttcaaatcgtgtctatacagttatcacgtgacgcgcacctttcaagcgtcatagcgatttgaatagaaacactgtgatggaagctctacgcggtaagttagaaaggcaatacttatcagggtaggcaaatacgca
gi|11 : tgcatactccatccgcttttttatgggtggattttctgcaccgatttcagcgtggaagccaaaacactcatattgataaatatgtaatatctttagcaaaaactcttaccggttgttaaaaaaacactttatatatgtccataacgtaTAGTCCATCCACTATTTTATTGGTGGATTCTT-CAGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATT-TTTT---AT--TAAA--ATATGACTGTATATA----ATTGAGAAAA-A---CACTTACTGATTGTT-AAAAAAA-TA-CTTTATTTATGTCTATAACAT-AAAAATATCCACAAAACTACAAATTAAACACTTTAG----CAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTTG-ACAGTTATCACATGATGCGCACCTGTCAATCGACA--TAGCGATTTGAATAGGAACAC
gi|12 : TTTCT--GTG---------CCGAAGCCAAAACTCTCGTA-TTG----AT--TAAA--ATATG--TA-ATAAC----ATTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAAACATACATTTAACACTTCAA----TCATGTAGTTTTAATATACACTCCTAC-TTC-AA---------------AGTTATCCCGTGACGCACACCTTTCAAGCATCA--TAGAGATTCAAATAGAAAC-----------AGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGTA
gi|13 : tTGGCGAAATATTTCTCTTACCGGTTGTT-AAATAAA-CA-CTTTATATATGTCTATAACGTAAAAAATATCCACAAAACAGCACATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTT-GAATCG--TTTTTG-ACAGTTATCAC---------------------------AGCGATTTGAATAG-AACACTGTGATGGAAGCTCGACGCGGTAAATTGGAAAGGCAATATTTAT
gi|14 : agtgtgtttgtcaagttgaaatcggaccctggtcttggtatgttacaagaCATAGTCCATCAGCTTTTTCATGGGTGGATC-TT-CTGCACCGATTTCA--GTGATTTCAGTGCGGAAGCCAAAACACTCATA-TTT----ATATTAAATCATCTA--TA-ATAT-------TGACAAAA-A---CACTAGCAAGTTGTT-AAAAATA-TA-CTTTATTTATATCTATAACGT-AAAAATATCAAAAAATACACACATTAAACATTTAAA----CAACTTAGTTTTTACACA----CCTACTTTC-AAATCG--TGTTTT-ACAGTTATC
gi|15 : aGCATAGTCCATCCACATTTTTATGGGTGGATT-TT-CTACAC-GATTTCA--GTG---------CGGAAGCTAAAACACTCATATTTT----AT--TAAA--ATATG---G-ATATA----ATTGAGAAAA-A---CACTTACCGGTTGTT-TAAAAAA-TA-CTTTATTTATGTCCATAACAT-AAAAATATCCACAAAATCGCACATTAAACACTTAAA----CAA-TTAGTTTTTACATACAATCCTACTTTC-AAATCA--TGTTTG-ACAGTTATCAC
gi|16 : TAGAAGCACTGCCGTGGAAGTTCTACTTGGTAAATGGGAAAGGCAATACTTGTGGGT--GTAGGC-AATACACA
gi|17 : TAGAAACACTGAG-TGGAAGTTCTACTTTGTAAATGGGAAAGGCAATACTTGT--GGATGTAGGC-AATACACA
gi|18 : AGTTCTAATTGGTAAATGGGAAAGGCAGTACTTATGGGT--GTAGGC-AATACACA
gi|19 : TTATTTATGTCCATAACGT-TAAA-TATCCACAAAAACGCACTTTAAACACTT
gi|2 : TGCATAGTCCATCCGCTTTTTCATAGGTGGATT-TT-CAGCACCGATTTCA--GTG---------CGGAAGTCAAAACACTCATT-TTTTTTTAT--TTAA--ATATG--TA--TATA----AATGGGAAAA-A---TACTTACCAATTGTT-AAAAAAA-TA-CTTTATTTATGTCCATATTGC-AAAAATATCCACAAAACCGCACATTAAGCACTTAAA----CAACTAAGTATTTACATACAATCCTACTTTC-AAATCG--TCATAG-ACAGTTATCACGTGAAGCACACCTTTCAAACGTCA--TAGCGATTTGAATAGAAACACTGCGGTGGAAGCTCTACGCGGTAAATTGGAAAGACAATACTTGTGAGG--GAAGGCAAATACGCA
gi|3 : TGCGTACTCCATCCGCATTTT-ATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCC-AAACACTAATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAA-A---CTTTTACCGGTTGTTAAAAAAAA-CA-ATTTATATATGTCCATAACGT-AAAAATATCCATAAAACCGCACATTTAACACATAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTA-ACAGTTATCATGTGACGCGCACCTTTCAAGCGTCATGTAGCGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAATGCAATATTTATCAGG--GTAGGCAAATACGCA
gi|4 : TGCATACTCCATTCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TG-ATATC----ATTAGCAAAA-T---ATCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATACGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTTAAACGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|5 : TGCATACTCCATTCGCTTTTTTACGGGTGGATT-TT-CCACACCAATTTCA--GTG---------CTGAGGCCAAAACACTCTTA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTTGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTAACATATGTCCATAACGA-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-TAATCC--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTCAAGCGTCA--TAGCGATTTGAATAGAAACGCTGTGATGGAAGCTCTACGCGTTAAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|6 : TGCATGCTCTATCAGCTTTTTTATGGGTGGATT-TT-CCGCACTGATTTCA--GTG---------CGGAAGCCAAACCACTCATA-ATG----AT--TAAA--ATATG--TA-AAATC----ATTAGCAAAA-A---CCCTTACCGGTTGTA-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTATA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTCG-ATAGTTATCACGTGATGCACACCTTTCAAGCGTCA--TAGCAATTTGAATAGAAACACTGTGATGAAAGCTCTAAGAGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCATTTACG
gi|7 : TGCATACTCCATCTGCTTTTTTATGGGTGGATT-TT-CCGCACCAATTTCA--GTG---------CAGAAGCCAAAACACTCAT---TG----AT--TAAA--ATATG--TA-ATATC----AT------AA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAATGT-AAAAATATCCACAAAACCGCACATTTGACACTTTAA----TAACTTA-TTTTTACATACAATCCTACATTC-TAATCG--TGTTTG-ACAGTTATCACATGACGCGCACCTTTCAAGCGTCA--TAGCGATTGGAATAGAGACACTGTGATGGAAGCTTTACGCGATTAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|8 : TGCATACTCCATTTGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCCTA-TTG----AT--TAAA--ATATG--TA-ATATCATTAATTAGCAAA-------------CGGTTGTT-AAATAAA-CA-CTTTATATATGTCCATAACGTAAAAAATATCCACAAAACAGCAAATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTC-AAATCGTTTTTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--CAATGATTTGAATAG-AACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATATTTA
gi|9 : TTTCATGGTG---------CGGAAGCTAAAACACTGATT-TTTT---AT--TAAA--ATATG--TA--TATA----ATTGAGAAAA-A---CACTTACCGGTTGTT-AAAAAAAACAACTTTATTTATGTCCATTTCGT-AAAAATATCCACAAAACCACCTATTAAGCACTTAAA----CAACTTAGTTTTTACATACAATCCTACTTTT-AAATCA--TGTTTG-A-------CATGTGAAGGGTCCCTTTCAAATGTCA--TAGCGATTTTAATAGAAACACTGTTGTGGAAGCTCTACACGGTAAATTGGAAAGGCAATACTTGTGAGG--GAAGGCAAATACACA
blockSeqs : C . TG ATTTCAGTG AT TTTT AT TC AC T CATTA T TTT T A A A A A . . TT G T TG C AT A
blockSeqs : . . . . A T . . . . C . . A . . . A T . . . G . . C . A
blockSeqs : . . . . T T . . . . A . . T . . . . T . . . T . . G . A
blockSeqs : . . . . A . . . . . C . . T . . . . A . . . G . . G . A
blockSeqs : . . . . A . . . . . A . . A . . . . A . . . G . . G . A
blockSeqs : . . . . T . . . . . A . . A . . . . A . . . C . . C . A
blockSeqs : . . . . A . . . . . C . . A . . . . A . . . G . . C . A
blockSeqs : . . . . A . . . . . C . . T . . . . T . . . T . . C . A
blockSeqs : . . . . A . . . . . C . . T . . . . T . . . T . . C . A
blockSeqs : . . . . A . . . . . C . . T . . . . T . . . G . . C . .
blockSeqs : . . . . A . . . . . C . . C . . . . T . . . G . . G . .
blockSeqs : . . T . . . . . A . . T . . . . T . . . T . . . . .
blockSeqs : . . . . . . . . . . . A . . . . T . . . G .
blockSeqs : . . . . . . . A . . . .
blockSeqs : .
blockSeqCons : ****
originalCons : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
finalCons : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
Alignments
lowQualScore : 111111111 1111
lowQualScore : 3 3 33 111111111 22 1111 33 33 33 2 66666 0 2 444 2 2 2 2 0 5 1 6666 2 33 1 2 44 1 44 2
lowQualScore : . . .. ......... .. .... .. .. .. . ..... . . ... . . . . . . . .... . .. . . .. . .. .
lowQualScore : 3 3 99 444444444 99 8888 99 99 99 9 88888 8 7 777 3 7 7 7 8 0 4 1111 7 77 7 7 22 5 22 3
consensus : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
Reference ( family-1601 ) : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTGGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|1 : TGCATACTCCATTCGCTTTTTAATGGGTGGATT-TTTCCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-TTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAATATTTAACTTAGTTTTTACATACAATCCTACTGTCAAAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACCGTCCAAGCGTCA--TAACGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGC
gi|10 : TGCATACTCCATCCGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GCG---------TGGAAGCCAAAACACTCATA-TTG----AT----AA--ATATG--TA-ATATC----TTTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AA
gi|10 : ACTTTC-AAATCG--TGTCTATACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAGTTAGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCActttcaaatcgtgtctatacagttatcacgtgacgcgcacctttcaagcgtcatagcgatttgaatagaaacactgtgatggaagctctacgcggtaagttagaaaggcaatacttatcagggtaggcaaatacgca
gi|11 : tgcatactccatccgcttttttatgggtggattttctgcaccgatttcagcgtggaagccaaaacactcatattgataaatatgtaatatctttagcaaaaactcttaccggttgttaaaaaaacactttatatatgtccataacgtaTAGTCCATCCACTATTTTATTGGTGGATTCTT-CAGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATT-TTTT---AT--TAAA--ATATGACTGTATATA----ATTGAGAAAA-A---CACTTACTGATTGTT-AAAAAAA-TA-CTTTATTTATGTCTATAACAT-AAAAATATCCACAAAACTACAAATTAAACACTTTAG----CAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTTG-ACAGTTATCACATGATGCGCACCTGTCAATCGACA--TAGCGATTTGAATAGGAACAC
gi|12 : TTTCT--GTG---------CCGAAGCCAAAACTCTCGTA-TTG----AT--TAAA--ATATG--TA-ATAAC----ATTAGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAAACATACATTTAACACTTCAA----TCATGTAGTTTTAATATACACTCCTAC-TTC-AA---------------AGTTATCCCGTGACGCACACCTTTCAAGCATCA--TAGAGATTCAAATAGAAAC-----------AGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGTA
gi|13 : tTGGCGAAATATTTCTCTTACCGGTTGTT-AAATAAA-CA-CTTTATATATGTCTATAACGTAAAAAATATCCACAAAACAGCACATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTT-GAATCG--TTTTTG-ACAGTTATCAC---------------------------AGCGATTTGAATAG-AACACTGTGATGGAAGCTCGACGCGGTAAATTGGAAAGGCAATATTTAT
gi|14 : agtgtgtttgtcaagttgaaatcggaccctggtcttggtatgttacaagaCATAGTCCATCAGCTTTTTCATGGGTGGATC-TT-CTGCACCGATTTCA--GTGATTTCAGTGCGGAAGCCAAAACACTCATA-TTT----ATATTAAATCATCTA--TA-ATAT-------TGACAAAA-A---CACTAGCAAGTTGTT-AAAAATA-TA-CTTTATTTATATCTATAACGT-AAAAATATCAAAAAATACACACATTAAACATTTAAA----CAACTTAGTTTTTACACA----CCTACTTTC-AAATCG--TGTTTT-ACAGTTATC
gi|15 : aGCATAGTCCATCCACATTTTTATGGGTGGATT-TT-CTACAC-GATTTCA--GTG---------CGGAAGCTAAAACACTCATATTTT----AT--TAAA--ATATG---G-ATATA----ATTGAGAAAA-A---CACTTACCGGTTGTT-TAAAAAA-TA-CTTTATTTATGTCCATAACAT-AAAAATATCCACAAAATCGCACATTAAACACTTAAA----CAA-TTAGTTTTTACATACAATCCTACTTTC-AAATCA--TGTTTG-ACAGTTATCAC
gi|16 : TAGAAGCACTGCCGTGGAAGTTCTACTTGGTAAATGGGAAAGGCAATACTTGTGGGT--GTAGGC-AATACACA
gi|17 : TAGAAACACTGAG-TGGAAGTTCTACTTTGTAAATGGGAAAGGCAATACTTGT--GGATGTAGGC-AATACACA
gi|18 : AGTTCTAATTGGTAAATGGGAAAGGCAGTACTTATGGGT--GTAGGC-AATACACA
gi|19 : TTATTTATGTCCATAACGT-TAAA-TATCCACAAAAACGCACTTTAAACACTT
gi|2 : TGCATAGTCCATCCGCTTTTTCATAGGTGGATT-TT-CAGCACCGATTTCA--GTG---------CGGAAGTCAAAACACTCATT-TTTTTTTAT--TTAA--ATATG--TA--TATA----AATGGGAAAA-A---TACTTACCAATTGTT-AAAAAAA-TA-CTTTATTTATGTCCATATTGC-AAAAATATCCACAAAACCGCACATTAAGCACTTAAA----CAACTAAGTATTTACATACAATCCTACTTTC-AAATCG--TCATAG-ACAGTTATCACGTGAAGCACACCTTTCAAACGTCA--TAGCGATTTGAATAGAAACACTGCGGTGGAAGCTCTACGCGGTAAATTGGAAAGACAATACTTGTGAGG--GAAGGCAAATACGCA
gi|3 : TGCGTACTCCATCCGCATTTT-ATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCC-AAACACTAATA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTAGCAAAA-A---CTTTTACCGGTTGTTAAAAAAAA-CA-ATTTATATATGTCCATAACGT-AAAAATATCCATAAAACCGCACATTTAACACATAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TGTTTA-ACAGTTATCATGTGACGCGCACCTTTCAAGCGTCATGTAGCGATTTGAATAGAAATACTGTGATGGAAGCTCTACGCGGTAAATTGGAAATGCAATATTTATCAGG--GTAGGCAAATACGCA
gi|4 : TGCATACTCCATTCGCTTTTTTATGGGTGGATT-TT-CCGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCATA-TTG----AT--TAAA--ATATG--TG-ATATC----ATTAGCAAAA-T---ATCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATACGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATCG--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTTAAACGTCA--TAGCGATTTGAATAGAAACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCAAATACGCA
gi|5 : TGCATACTCCATTCGCTTTTTTACGGGTGGATT-TT-CCACACCAATTTCA--GTG---------CTGAGGCCAAAACACTCTTA-TTG----AT--TAAA--ATATG--TA-ATATC----ATTTGCAAAA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTAACATATGTCCATAACGA-AAAAATATCCACAAAACCGCACATTTAACACTTAAA----TAACTTAGTTTTTACATACAATCCTACTTTC-TAATCC--TTTTTG-ACAGTTATCACGTGACGCGCACTGTTCAAGCGTCA--TAGCGATTTGAATAGAAACGCTGTGATGGAAGCTCTACGCGTTAAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|6 : TGCATGCTCTATCAGCTTTTTTATGGGTGGATT-TT-CCGCACTGATTTCA--GTG---------CGGAAGCCAAACCACTCATA-ATG----AT--TAAA--ATATG--TA-AAATC----ATTAGCAAAA-A---CCCTTACCGGTTGTA-AAAAAAA-CA-CTTTATATATGTCCATAACGT-AAAAATATCCACAAAACCGCACATTTAACACTTATA----TAACTTAGTTTTTACATACAATCCTACTTTC-AAATTG--TGTTCG-ATAGTTATCACGTGATGCACACCTTTCAAGCGTCA--TAGCAATTTGAATAGAAACACTGTGATGAAAGCTCTAAGAGGTAAATTGGAAAGGCAATACTTATCAGG--GTAGGCATTTACG
gi|7 : TGCATACTCCATCTGCTTTTTTATGGGTGGATT-TT-CCGCACCAATTTCA--GTG---------CAGAAGCCAAAACACTCAT---TG----AT--TAAA--ATATG--TA-ATATC----AT------AA-A---CTCTTACCGGTTGTT-AAAAAAA-CA-CTTTATATATGTCCATAATGT-AAAAATATCCACAAAACCGCACATTTGACACTTTAA----TAACTTA-TTTTTACATACAATCCTACATTC-TAATCG--TGTTTG-ACAGTTATCACATGACGCGCACCTTTCAAGCGTCA--TAGCGATTGGAATAGAGACACTGTGATGGAAGCTTTACGCGATTAATTGGAAAGGCAATACTTATCAGG--GTAGACAAATACGCA
gi|8 : TGCATACTCCATTTGCTTTTTTATGGGTGGATT-TT-CTGCACCGATTTCA--GTG---------CGGAAGCCAAAACACTCCTA-TTG----AT--TAAA--ATATG--TA-ATATCATTAATTAGCAAA-------------CGGTTGTT-AAATAAA-CA-CTTTATATATGTCCATAACGTAAAAAATATCCACAAAACAGCAAATTTAACACTTAAA----TAACTTAG-TTCTACATACAATCCTACTTTC-AAATCGTTTTTTTG-ACAGTTATCACGTGACGCGCACCTTTCAAGCGTCA--CAATGATTTGAATAG-AACACTGTGATGGAAGCTCTACGCGGTAAATTGGAAAGGCAATATTTA
gi|9 : TTTCATGGTG---------CGGAAGCTAAAACACTGATT-TTTT---AT--TAAA--ATATG--TA--TATA----ATTGAGAAAA-A---CACTTACCGGTTGTT-AAAAAAAACAACTTTATTTATGTCCATTTCGT-AAAAATATCCACAAAACCACCTATTAAGCACTTAAA----CAACTTAGTTTTTACATACAATCCTACTTTT-AAATCA--TGTTTG-A-------CATGTGAAGGGTCCCTTTCAAATGTCA--TAGCGATTTTAATAGAAACACTGTTGTGGAAGCTCTACACGGTAAATTGGAAAGGCAATACTTGTGAGG--GAAGGCAAATACACA