lowQualScore : 1111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444 1 222 9999999999999999 333 2222 55555555 6666666666666666666666666666 2222 22 111 7777777777777777777777777777 11 1 1 1 2222 1111 11 444444444444 11 11111111 2222 1 111 222222222222222 22222 1111111 111111 11 3333333333333333333333333333333333333333333333333333333333 1111111 222 222222222 1 3333 1 1 7777777777777777777 111 44444444444444444444444444 11111 7777777777777777777777777777777777777777777777777777 2222 22222 111 222
lowQualScore : 6 0000 5 4 4 111 4 9999999999999999 555 3 2222 2 22222222 0000000000000000000000000000 4 3333 2 2 4 55 777 6666666666666666666666666666 11 0 0 1 0 6 8 3 9 888 6666 6666 2 5 4 4 3 44 555 88 3 55 55 1 111111111111 33 3 88 11111111 55 1111 3 4 6 55 444 777777777777777 1 6 2 2 22222 6666666 222222 66 11 2222222222222222222222222222222222222222222222222222222222 6666666 999 0 55 000000000 4 55 3 888 4 3 0000 4 4 2 1 2 4 0000000000000000000 888 888 7 9 1 0 77777777777777777777777777 1 55555 5555555555555555555555555555555555555555555555555555 1111 00000 7 2 6 2 777 444
lowQualScore : . .... . . . ... . ................ ... . .... . ........ ............................ . .... . . . .. ... ............................ .. . . . . . . . . ... .... .... . . . . . .. ... .. . .. .. . ............ .. . .. ........ .. .... . . . .. ... ............... . . . . ..... ....... ...... .. .. .......................................................... ....... ... . .. ......... . .. . ... . . .... . . . . . . ................... ... ... . . . . .......................... . ..... .................................................... .... ..... . . . . ... ...
lowQualScore : 0 0000 0 0 0 555 0 0000000000000000 000 0 0000 5 00000000 0000000000000000000000000000 0 0000 5 5 0 55 555 8888888888888888888888888888 00 8 8 4 8 2 0 3 0 333 0000 5555 0 0 4 0 6 77 888 66 6 00 00 2 333333333333 99 3 88 44444444 33 2222 3 4 7 55 444 111111111111111 1 7 1 6 66666 7777777 888888 99 00 6666666666666666666666666666666666666666666666666666666666 2222222 222 7 11 222222222 0 55 6 555 0 8 0000 4 4 2 2 6 0 3333333333333333333 333 111 1 0 0 8 33333333333333333333333333 0 00000 8888888888888888888888888888888888888888888888888888 2222 88888 0 5 5 5 222 555
consensus : CACAGGCGGCAGTATCNGACGTTTGGATTACCCCCTTNACCGATNAAGAAAANGAATCACCTCCCCCCCCCCTTTAAAAAAAAAATNGCCAGAATAGNAAATAAAAATTAAAAAAAATTAA---CCCC--ATATTTTTTTTANCCTTACCCNAACCCTAANANANAAAACTAAAAA---AAAACGAGGGAAGT--T----TAAGGNT----TATGGATTTA--GATATATAGACAAGGTTACCAACNTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTNTTTC--ACTGATC-AAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTAC-AAA-TGGTTGTA--G--TTTCCGAAACCG----N----AAAC-AA-AAATCAATTCC---C--T-TT-AACCG--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------AT-NC----AACATTTATCGTAGGTCGGAAAA-NCTTTGGAACA--CAN--AA------AATG--CC-AA----------TA------------T--------------A---AC--C-AT-------TAAT-------TCTCCAAATTTGCCGGTATC-TAC----AA--GTTGAAAACAA--AACT-TAA--GTGT-AAATGGAACTTATTNAACAGGT-TTA-C-CCGCTTCAAATC-GCTGTATTCGCTGAANTACCG---TA-G-TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAAAGGCTTG--TTTCCGG----TT-TATGNACT------GATTC----AATGGG-ATCACT---------GGGAA----CCAGTCCC-GAAATTCGCCGAAAACTTCC-GCCATCGAGGAAATT
Reference ( gi|1 ) : CACAGGTGGCAGTATACG-TGTTTGGATGACCCCCTTTACCGATAAAGAAAAAAAATCA---------CCGCTTTAAAAAAA---TTGCCA-AA-AGCAAA----AA--AAAAAAAATTAAACACCCCACATATTTTTTT-GCCCTTATCCTAACCCTAACACATAAAGCTAAAAA---AAAATAAAGGAAAC--T----TAAGGGT----TATGGATTTA--GATATATAGACAAGGTAACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCATTCAATCAACCTTTTTA--ACCGATC-AAAT-TTAGA-GAT-TTATCCACGAACCAGGGC---TGGTTAACACTAT-AAA-TGGTTGTA--G--TTTCCGAAACCG----T----AAAC-AA-AAATTAATTTC---C--T-TT-GACCG--TTTT-TCCGTGACATGTCGAAATG--CATGAAAAAA------AT-GC----AATATTTATTGCAGGTTGGAAAA-AATGTGGAACA--CAG--AA------AATG--CA-AA----------TA------------T--------------A---A--------------TAAT-------TCTCCAAGAGTGCCGGTATC-CAC----AC--GTTGCAAACAA--AACT-TAA--GTGT-AAATGGAACTTATTTAACATGT-TTA-C-CGGTCTAAAATC-GCTGTATTCGAAGAATTACTG---TATGTTCG--TTTT-TACACGTCTTTATTCAAAACGTTGGAA------------TCATGT------A-AATAAAGGCTTA--TTTCCGG----TT-TATGGACT------CATTC----AATGTGTATCACT---------GGGAA----CCAGTTCC-GAAATTCGCCGAAAACTTTT-GCCGGTAAAGAAATTGAAGGGGTCAACGTT
gi|7 : CACAGGCGGCAATATCGG-TGTTTGGATTACCCCCTTTACCGATTAAGAAAATGAA--A---------CC--TTTAAAAAAAAAATGGCCAGAA-AGCAAATAAAAATTAAAAAAAATTAA---CCCC--------------CCC----CCAAA----AAAAAAAAAA---AAAGA---ATAACAAACAAAATGTT----T---GTT----TTTGGATTTA--GATATATAAACAAGGTAACCAACACC-ACACTTGACCA-TGGTTACACTAACTGCATTCATTCAA-CTATTTC--ACTGATC-AAAT-ATAAA-GAT-TTATCCACGAACCAGAGC---TGGTTAACA
gi|16 : AGGCGGCAGTAT-CGACGTTTGAATTACCCCCTTAACCGATAAAG---AAAAATCACCTCCCCCCCCCCTTTAAAAAAA---TTACTA-AATAGGAAA----AA--AAAA
gi|3 : ccaATATTTTTTTTAACCTTACCCTAACCCTAACACATAAAACTAAAAA---AAAA--------GT--T----TAAAAA------ATGGATTAA--GATATATAGACAAGGTTACCAACTTC-ACACTGGGGCACTGTTTA-ACCAATTGCATTCAATCAAC-TATTTC--ACCGATC-AAAT-TAAGA-GAT-TCATCCACGAACCAGGAC---TGGATAACACTAT-AAA-TAGTTGCA--AGACTTCCAAAACCG----A----AAAC-CA-AAACCAATTCC---C--T-TT-AACCA--GTTT-TCCATGACGAGTCGAAATA--CATGATAAAA-------T-AC----AATATTTATCGCAG-TCGGAAAA-GATGAGGAACA--CAG--AA------AACA--CA-AA----------TA------------T--------------A---ACCGCGATTTATCAATAAT-------TCTCATAATTTGCCGGTATC-TAC----AG--GTTGAAAACAA--AACT-TAA--ATGT-AAATGGAACTTATTGAACAGGT-TTA-C-CTGCTTCAAATC-GCTGTATTCGCTGAAATATCG--------TCG---TAT-TACTTGTTTTTATTCAAAACATCGA---------------CATTT------C-TTTTAAGGCTGAAGTTTTCGGCGAATT-TCGGGACT------GGTTC----ggggggaaaaagggttatggatttagatatatagacaaggttaccaacttcacactgagcccatag
gi|11 : atatgaaatcactgggaagTAAGAATATAAAATGAGGGTAGG--TGTTATAAGGTTAATATATAGATTTA--GATATATAGACAAGGTCACC----TCGACACTGGtattggg
gi|16 : gactatatcggtgtttagaccacccaattaacatggttttcaaaagcaaaataacacaagccctgaccccacccactcaacccatttgtttttaaataaataaaatatatctatatattttatgattataAAAAA---AAAAGGGGGGAAA---------AAGGGT----TATGGATTTA--GATATATAGACAAGGTTACCAACTTC-ACACTGAGCCa
gi|2 : ccaaggcggcagtatcgacgtttgaattacccccttaaccgataaagaaaaatcacctcccccccccctttaaaaaaattactaaatagg----TAGGGGT----TATAGGGTTATTGAT-TA-AGACAAGGTTATCAACACG-ACAATGGACCA-AGGTTATACTAACTA---------------TTTA--TCTAATC-AAAT-TTAGA-GAT-TTATTCACAAACCTGGGC---TGGTTAGCACTAC-CAA-TGATAGTA--G--TTTTCGAAACC----------------A-AAATAAGTTTC---C--T-TT-AAACG---TTT-TCCGTGATAAGTCGAAATG--CATGAAAAAA------AT--CTATTAATATTGATCGTCGGTCGGATAA-CCTTTAGAACA--GTC--GA------ATTG--CC-AA----------TA------------T--------------A---ACTGCGAT-------TAATCAGTACGTATTCAA---TGGCACTAAC-TAT----GA--GATGAAAACAA--AACT-TAA--ATGT-AAATGGAACTTATTTCACA-GCATTA-C-CCGTTTCAAATC-TCTGTATTCGCTGAATTATCG----AAGTT-G--TTTT-T--ACTTTTTCATTCAAAACCACGGAACCTATTCCTCACTCACAT------A-ACCATAGGCTTG--TATCCGG----TG-TATGCATT------GACTC----AA----------T---------GGGAA----CCAGATCT-GAAA-TCGCTGAGAA-TTCC-GCCATTGAAGAAATTcatag
gi|15 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattaGGCTA-ACCAACT-CGTTTTATCAAC-TATTTC--ACTGATC-AAAT-TTAGACCAT-TT-TTCACGAATACGAAC---TGGTTAGCATTAC-AAA-TGGTTGCACCG--TTTCTGAAATCG----TCCAAAAGC-CA-AAATCAATTCC---C--CAGC-AACCGT-TTTT-TCTGCGAAAAGTCGAAtcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|14 : caaggtcatgtataataaCGTTTAATCAATCATCGCA---CTTATC-AT-T-TTAGA-GAA-TTGTCCACGACCTTGGAC---TGATTAAAA-TAC-AAA-AGATTGTT--G--TTTCTGAAACTG----G----AAATTAA-AACTTAATTTCGCGCAAT-CT-GA-------TT-TTAGGGACAAGTCGAAATGTCCAC---AAAA------AT-CA----AAAACTCGGAGCAGATTGGAAAA-GCTTTGTAACA--CAC--AA------
gi|23 : cTTCAATCAAC-TTTTTC--TCTGATC-AAAT-TTAGA-TAT-TTATCCATCAACCTGGGC---TGG
gi|4 : cacccatttttCCTTTTAGCACCCAGCTAAATGTTA-A-GAT-TTATCCACGAAC---------TTGTTAGCACAAC-AAAATTGTTGCA--G--TTTCCGAAACCGAAAAC----AAAC-AA-AAAACAATTCC---T--A-TT-AACCG---TTT-TCTGTGACAAGTCTAAATG--CAT-AAAAAC------AT-TT----AACATTTCTCGTGGGTTAGAAAGCAAT-TAAAACCTTCAG--AATGCCATAATAATCACGA----------TT------------T--------------ATCTA--------------TAAT-------TCTCCAAATTTGCCATTAAC-TACTTGTACAAATTGAAAACAA--AACA-CAA--ATGG-AAATGGAATTGATTAAACA-GCATTA-CACGCTTCAATTTTAGCTGTATTCGCTGAGCTATCG--------TCGGATTTT-T-CATGTTTTTATTGAAA
gi|9 : gacaacagaaccttcaaaaacaaaggcttttttccggtgtgtatattgactcaatggggaacactgggaaccagctcgccaaaacttccgccattgagaaaatgtttatgTTTC--ACTGATC-AAAT-TTAGA-GAA-TTATCCACGAGTCTGGGCTGGTGGTTACCACTTC-AGA-TTGTTGTA--G--TTTC--AAA------------AAAC-AA---------TTCA--C--T-TC-GACCA--TTTT-T--ATAACA-GGCGAAATG--CATAAAAAAATTCAACAT-TC----AACATTTATCGTAGGTTGGAAGC-CCT-TGGGACA--CTC--AA------AATG--CC-AATT--------TAACCTTGATTTATT--------------A---A--------------TGAT-------TCTCCAAATTTGCCAGTTTCTCA-----AA--GTTGATAACAA--AACT-agtaatgca
gi|17 : aAT-TTAAA-AAT-TTATCCATGAACCTGGGC---TGGTTAATCCTAC-AAA-TGGTTGTA--G--TTTCAGCAACCG----A----AAGC-AT-AAG-CAATTCC---C--A-TT-AACCA--TTTT-TCCGTGATAAGTTGAAAGT--CATG--AAAA------AT-CC----AACATTTATTGTAGGTCAGAAA
gi|27 : tTAGA-GAAACTATCCTCGAACATAGGC---TGGTTAACA
gi|10 : tcattcaactatttcactagaAT-TTATTCACGAACATGGGC---TGGTAAGCAC-ATCAAA-TGGTTATA--G--TTTCTGCAAT------T----AAA--AA-AAA-CAATTCC---C--T-TT-AAC------------------TGTCGAAATG--CATG--AAAA------AT-CT----AACATTTATCAAAGGTCGGAAAA-TCTTTGGAA-A---AGTCAA------AATG--CC-AA----------TA------------TTACGGCGATTTATCA---A--------------TAAT-------TTTCCAAATATGTCAGTATC-TAC----AA--GTTGAAAACAA--AAATGTAA---TGT-AAATGGAACTTA
gi|12 : tC---TGGTTAACACTAC-GCA-TGGTTGTA--G--TTTCCGAAA-CG----A----AAAA-AACAAAATAA--TC---C--A-TT-AAACT--GTTT-ACCGTGGAAAGTCTAAATG--CATG--AACC------ATGGC----AATATTTATCGTAGGTCTGAAAA-CCTTTGGACCA--CAC--AA------AATG--CC-AA----------TA------------T--------------G---A--------------T
gi|6 : atacttaaaaaaacacaaaatcaACTAT-AAA-TGGTTGTA--G--TTTCCGAAACTT----TCGGAAAAC-AA-AAATCAATTTC---C--T-TT-GACCG--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA-------T-AC----AATATTTATCGCAGGTCGGAAAA-AATGTGAAACA--CAG--AA------AATG--CC-AA----------TA------------T--------------A---ACCACAATTTATCAATAAT-------TCTCCAAGAGTGCCGGTATC-CAT----AC--GTTGTAAACAA--AACT-TAC--GCGT-AAATGGCACTTATTCAACATGT-TTA-C-CTGTCTCAAATT-ACTGTATTTGAAGAAC--------TATGTTCG--TTTT-T-CACGTTTTTATTCAAAcgctataatttatcaataatttttcgag
gi|19 : ACTA--AAA-TGGTTGTA--G--TTTACAAAAC--------------C-AA-AAAT--AGTTC---G--T-TTAAACCGTATTTT-TCTGTGACA
gi|8 : tccagcccagcaaaagtttccatgatgatatacaactggcct-AA-AAAC-AATTCC---C--A-TT-AATCAAATTTTATC---GACAAATCGAACTG--TCTGGAATAC------AG-TC----AACGTTCAGAATAAGTAAGAAAG-CCTGT-------------AA------AATG--CA-AACACTGTGGTTTA------------TC-------------A---A--------------GTAT-------TCTCAAAAATTGCCAATATC-TGG----AA--GTTG-AAATAATGAATT-AAA--GCACCAAATGGAATGTATTAAACA-GT-ATAAC-CTGCTTCAAACC-ATAATTCTTGATGAAATACTG---C-----CG--ATTT--ACACGTTATTATTGAAAACATTtggct
gi|18 : AT-------TCTCCAAATTTGCTAGTATC-TAC----GA--GTTGAAAACAA--AACA-TAG--ATAT-AAATCGAACTTATTTAACAGCG-TTA-C-ACGTTTCCAATC-GCTGTATTCG
gi|13 : agatttatcaagcTGCCGGTATC-CAC----AT--GTTGCAAGCAA--AACT-TAA--GTGT-AAATGGAACTTATTTAACAGAT-TTA-C-CTGTCTCAAATC-GCTGTATTCAAAGAAC--------TATGTTCG--TTTT-CATACGTTTTAATTCAAAACTTTGGAA------------TCATGT------A-AATAAAGGCTTG--TTTCCGG----TTAAATAGGCTTGTTTCCATTTATTAAATAGGTATCACT---------GGctgtattatcatcgatttttccaaattttc
gi|20 : CAA--AACT-TAAAAGTTT-AA-TGGAACTTATTGAACAGGT-TTA-C-CTGCTTCAAATC-GCTAAATTCGCTGAAATATCG---T-CGCCCG--ATTT-T
gi|5 : aaaacACT-TGA--ATGT-AAATGTAGCATATTTAACA-GCATTA-T-CCTCTTCAAATC-GTTGTATTAGCTGA---ACTA---TA-G-TCA--TTTTATATATATATTTATTCAAAATATC-GAA------------TTTTTTTCTTTGACAACAAA-ACATA-----CAGA----CT-TAT------------ATCC------TGTG-ATCACTGAGAACGGGGAGAA----CCAGTCCCTGAAATT-GCCAAACACTTTTCACCATCACGGAAATT
gi|2 : aaacgtctgtaaatcgtcggaaaacctttataattcgccaatatctCTCAAATC-GCTGTATTCG--------CTGGGCTATCATCG--TTTT-T-TATGCTTTTATTCAAAACATCGAAA------------Ttccatatttttaataaaaacatgtaaatatgtgtggcgaatacagcaatttgaagcaggtaatc
gi|4 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaa------A-AACAAAGGCTTT--TTTCCGG----TG-TGTATATT------GACTC----AATGGGGAACACT---------GGGAA----CCAG---------CTCGCC-AAAACTTCC-GCCATTGAGAAAATggggtattgttg
gi|3 : gacaacagaaccttcaaATCACT---------GGGAAGGAACCAGTCCC-GAAATTCGCCGAAAACTTCA-GCCTTAAAAGAAATgtttatgtttcaataaaaacatgaaaaatccgacgatagctcagcgaatacagctaaaattgaagcgtgtaatgctgtttaatcaattccatttccatttgtgttttgttttcaatttgtacaagtagttaatggcaaatttggagaattatagataaatcgtgattattatggcattctgaaggttttaattgctttctaacccacgagaaatgttaaatgtttttatgcatttagacttgtcacagaaaacggttaataggaattgttttttgtttgttttcggtttcggaaactgcaacaattttgttgtgctaacaagttcgtggataaatcttaacatttagctgggtgctaaaaggagtaatgca
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TTTATAGATTCAACAGGTAAATTGGCATTAACAACGCATACAATAATTATAATAAAGACAAGAGAAATAT
Unaligned ( gi|22 ): TTCTTGGCATAGGTGAGAGTATCAGTGTTTAGAGGGCCCAATTTACCTGATGTTCGTCCCCCACACCC
Unaligned ( gi|24 ): CTTAATGCTAACAGAACTTATTTTACAACATTATTCACTTCAAATCTATGCATTGGCTGAACT
Unaligned ( gi|25 ): TTTCCTAATAAATTGATAATTCAACAATTTATTAAATGACCAAGAAACCAGATCAAATATGA
Unaligned ( gi|26 ): CCACAAGTGACAGTATCCATGTTTAGATTACCCTCCTTACCTGAGCCCCCAAAGCAAAAACA
Unaligned ( gi|28 ): TTCTTCCAAATTTGCAAGTATCTAAGAGTTGAAAACAAAGCTT
Unaligned ( gi|29 ): AAAAAAACACTTAAGAAACCGTGGAATACAGATTAGGGTA
Unaligned ( gi|30 ): ATTAAGATGATAATAAACCAGAACTGTAGCGGGTG
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 3333 111 7777777777 3333 11 333 22222222222222 111 33333333333333333 111111 1 1 1 2222 222222222222 11111111 000000000000000000000000000000 1111111 111 11 333333333 1 333333333333 22222222222222222222 4444444444444444444444 222222222 1111
lowQualScore : 0000 1 1 666 7 5555555555 7 7 1 6666 1 4 88 555 55555555555555 7 1 6 1 1 1 6 444 55555555555555555 444444 99 2 3 6 0 3 0 2 0 0000 0 3 3 3 555 3 44 44 111111111111 3 44 6666 99 3 99999 8888 55 0 99999999 44 666 1 0 22 555555555555555555555555555555 777 1111111 3 44 0 999999 0 1 44 2 000 3 1 00 44 2 999999999 88 3 1 0 3 222222222222 1 77777777777777777777 99 1111111111111111111111 4 222222222 7777 88888 3 3 8 4
lowQualScore : .... . . ... . .......... . . . .... . . .. ... .............. . . . . . . . ... ................. ...... .. . . . . . . . . .... . . . . ... . .. .. ............ . .. .... .. . ..... .... .. . ........ .. ... . . .. .............................. ... ....... . .. . ...... . . .. . ... . . .. .. . ......... .. . . . . ............ . .................... .. ...................... . ......... .... ..... . . . .
lowQualScore : 8888 0 0 777 3 0000000000 3 3 0 7777 0 7 55 000 33333333333333 3 0 7 0 0 0 7 000 77777777777777777 333333 22 2 3 7 0 2 0 2 5 6666 1 6 6 3 444 3 66 66 111111111111 1 22 5555 55 1 55555 2222 00 5 00000000 66 444 0 6 44 888888888888888888888888888888 000 8888888 6 66 7 666666 4 2 22 9 333 3 0 11 22 1 000000000 88 3 5 8 4 555555555555 0 88888888888888888888 22 8888888888888888888888 2 888888888 0000 66666 8 2 0 6
consensus : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAATCACCTC---------TTTAAAAAAAAAATTGCCA-AA-AGNAAANAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CCTTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC--G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACACAAAATGCCAATATAAC----------C-------AC-A--------TA---AT-------TCT-CCA--AATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAACTAT-CGT--G-TCG-TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
Reference ( family-1587 ) : CACAGGCGGCAGTATCNGACGTTTGGATTACCCCCTTNACCGATNAAGAAAANGAATCACCTCCCCCCCCCCTTTAAAAAAAAAATNGCCAGAATAGNAAATAAAAATTAAAAAAAATTAA---CCCCATAT-TTTTTTTANCCTTACCCNAACCCTAANANANAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGNT----TATGGATTTA--GATATATAGACAAGGTTACCAACNTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTNTTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GNAAAC-AA--A----AATCAATTCCCT-TTAACC--G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAANCTTTGGAACACANAAAATGCCAATATAAC----------C-------AT----------TA---AT-------TCT-CCA--AATTTGCCGGTA------TCTACAAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTNAACAGGTTTACCCGCTTCAAATC--GCTGTATTCGCTGAANTAC-CGTA-G-TCG-TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----NACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAGGAAATT
gi|1 : CACAGGTGGCAGTATACG-TGTTTGGATGACCCCCTTTACCGATAAAGAAAAAAAATCACCGC---------TTTAAAAAAA---TTGCCA------AAAGCAAAAA--AAAAAAAATTAAACACCCCACATATTTTTTTGCCCTTATCCTAACCCTAACACATAAAGCTAAAAA---AAAATAAAGGAA--A---CT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTAACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCATTCAATCAACCTTTTTAACCGATCAAAT-TTAGA-GAT-TTATCCACGAACCAGGGC---TGGTTAACACTATAAA-TGGTTGTA--G--TTTCCGAAA----CC----GTAAAC-AA--A----AATTAATTTCCT-TTGACC--G--TTTT-TCCGTGACATGTCGAAATG--CATGAAAAAA------ATG-CA---ATATTTATTGCAGGTTGGAAAAAATGTGGAACACAGAAAATGCAAATATAA-------------------------------TA---AT-------TCT-CCA--AGAGTGCCGGTA------TCCACACGTTGCAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACATGTTTACCGGTCTAAAATC--GCTGTATTCGAAGAATTAC-TGTATGTTCG-TTTT-TACACGTCTTTATTCAAAACGTTGGAA------------TCATGT------A-AATAA-------AGGCTT--ATTTCCGG----TT---TA----TG----GACTCATTCAAT-GTGT-ATCACTGGGAA----CCAGTTCC-GAAATTCGCCGAAAAC-TTTTGCCGGTAAAGAAATT
gi|10 : AT-TTATTCACGAACATGGGC---TGGTAAGCACATCAAA-TGGTTATA--G--TTTCTGCAA----T------TAAA--AA--A----AA-CAATTCCCT-TTAACT--G--T----------------CGAAATG--CATGAAAAA--------TC-TA---ACATTTATCAAAGGTCGGAAAATCTTTGGAAAAGTCAAAATGCCAATATTACGGCGATTTATC-------AA----------TA---AT-------TTT-CCA--AATATGTCAGTA------TCTACAAGTTGAAAACAA--AAATGTAA---TG-TAAATGGAACTTAgaaggggtcaacgtt
gi|11 : tTAAGAATATAAAATGAGGGTA--GGTGTTATAAGGTTAATATATAGATTTA--GATATATAGACAAGGTCACC----TCGACACTGG
gi|12 : gactatatcggtgtttagaccacccaattaacatggttttcaaaagcaaaataacacaagccctgaccccacccactcaacccatttgtttttaaataaataaaatatatctatatattttatgattataC---TGGTTAACACTACGCA-TGGTTGTA--G--TTTCCGAAA----C-----GAAAAA-AACAA----AAT-AAT-CCAT-TAAACT--G--TTTA--CCGTGGAAAGTCTAAATG--CATGAACCA--------TGGCA---ATATTTATCGTAGGTCTGAAAACCTTTGGACCACACAAAATGCCAATATGAT----------C-------GCTA--------TA---AT-------TTA-TCAATAATTTa
gi|13 : atacttaaaaaaacacaaaatcaTGCCGGTA------TCCACATGTTGCAAGCAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGATTTACCTGTCTCAAATC--GCTGTATTCAAAGAACTA--TGT----TCG-TTTT-CATACGTTTTAATTCAAAACTTTGGAA------------TCATGT------A-AATAA-------AGGCTT--GTTTCCGG----TTAAATAGGCTTGTTTCCATTTATTAAAT-A-GGTATCACTGGttcgag
gi|14 : CGTTTAATCAATC-ATCGCACTTATCAT-T-TTAGA-GAA-TTGTCCACGACCTTGGAC---TGATTAAAA-TACAAA-AGATTGTT--G--TTTCTGAAA----CT----GGAAATTAA--A----ACTTAATTTCGC-GCAATCT-G--ATTT-TAGG-GACAAGTCGAAATGTCCAC---AAAA------ATC-AA---AAACTCGGAGCAGATTGGAAAAGCTTTGTAACACACAA
gi|15 : cGGCTA-ACCAACT-CGTTTTATCAAC-TATTTCACTGATCAAAT-TTAGACCAT-TT-TTCACGAATACGAAC---TGGTTAGCATTACAAA-TGGTTGCACCG--TTTCTGAAATCGTCC----AAAAGC-CA--A----AATCAATTCCCCAGCAACC--GT-TTTT-TCTGCGAAAAGTCGAA
gi|16 : caaggtcatgtataataaAGGCGGCAGTATC-GACGTTTGAATTACCCCCTTAACCGATAAAGAAA---AATCACCTCCCCCCCCCCTTT---AAAAAAATTACTA-AATAGGAAAAAAAAA
gi|16 : ccaAAAAA---AAAAGGGGGGAA--A-------AAGGGT----TATGGATTTA--GATATATAGACAAGGTTACCAACTTC-ACACTGAGCCggggggaaaaagggttatggatttagatatatagacaaggttaccaacttcacactgagcccatag
gi|17 : ccaaggcggcagtatcgacgtttgaattacccccttaaccgataaagaaaaatcacctcccccccccctttaaaaaaattactaaataggAT-TTAAA-AAT-TTATCCATGAACCTGGGC---TGGTTAATCCTACAAA-TGGTTGTA--G--TTTCAGCAA----CC----GAAAGC-AT--A----AG-CAATTCCCA-TTAACC--A--TTTT-TCCGTGATAAGTTGAAAGT--CATG--AAAA------ATC-CA---ACATTTATTGTAGGTCAGAAAcatag
gi|18 : t---AT-------TCT-CCA--AATTTGCTAGTA------TCTACGAGTTGAAAACAA--AACA-TAG--ATA-TAAATCGAACTTATTTAACAGCGTTACACGTTTCCAATC--GCTGTATTCGCTGTATTAT-C----A-TCGATTTT-TCCAAATTTT
gi|19 : agatttatcaagcACTA-AAA-TGGTTGTA--G--TTTACAAAA----C----------C-AA--A----AAT-AGTTCGTT-TAAACC--GTATTTT-TCTGTGACAAGc
gi|2 : tccagcccagcaaaagtttccatgatgatatacaactggc-TAGGGGT----TATAGGGTTATTGAT-TA-AGACAAGGTTATCAACACG-ACAATGGACCA-AGGTTATACTAACT---------------ATTTATCTAATCAAAT-TTAGA-GAT-TTATTCACAAACCTGGGC---TGGTTAGCACTACCAA-TGATAGTA--G--TTTTCGAAA----CC------------A--A----AATAAGTTTCCT-TTAAAC--G--TTTT--CCGTGATAAGTCGAAATG--CATGAAAAAA------ATC-TATTAATATTGATCGTCGGTCGGATAACCTTTAGAACAGTCGAATTGCCAATATAAC----------TGCG----AT----------TA---ATCAGTACGTAT-TCA--A---TGGCACTA------ACTATGAGATGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTTCACAGCATTACCCGTTTCAAATC--TCTGTATTCGCTGAATTAT-CGAA-G-TTG-TTTT-T--ACTTTTTCATTCAAAACCACGGAACCTATTCCTCACTCACAT------A-ACCAT-------AGGCTT--GTATCCGG----TG---TA----TG----CATTGACTCAA------------TGGGAA----CCAGATCT-GAAA-TCGCTGAGAA--TTCCGCCATTGAAGAAATTtggct
gi|2 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattaTACCC-CCTCAAATC--GCTGTATTCGCTGGGCTAT-C----A-TCG-TTTT-T-TATGCTTTTATTCAAAACATCGAAA------------Ttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|20 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaCAA--AACT-TAAAAGTT-TAA-TGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTAAATTCGCTGAAATAT-CGTC-GCCCG-ATTT-T----GTTTTttgttg
gi|23 : TTCAATCAAC-TTTTTCTCTGATCAAAT-TTAGA-TAT-TTATCCATCAACCTGGGC---TGG
gi|24 : cacccatttttCT-TAA---TG-CTAACAGAACTTATTTTACAACATTATTCACTTCAAATC--TATGCATTGGCTGAACT
gi|26 : CACAAGTGACAGTATCC-ATGTTTAGATTACCCTCCTTACC
gi|27 : cTCATTCAAC-TATTTCACT----AGAT---AGA-GAAACTATCCTCGAACATAGGC---TGGTTAACAtgagcccccaaagcaaaaaca
gi|28 : T-------TCTTCCA--AATTTGCAAGTA------TCTAAGAGTTGAAAACAA--AGCT-T
gi|3 : AT-G-AA-ATCACTGGGAAGGAACCAGTCCC-GAAATTCGCCGAAAAC-TTCAGCCTTAAAAGAAAT
gi|3 : atATAT-TTTTTTTAACCTTACCCTAACCCTAACACATAAAACTAAAAA---AAAA----------G---TT-TAAAAA------ATGGATTAA--GATATATAGACAAGGTTACCAACTTC-ACACTGGGGCACTGTTTA-ACCAATTGCATTCAATCAAC-TATTTCACCGATCAAAT-TAAGA-GAT-TCATCCACGAACCAGGAC---TGGATAACACTATAAA-TAGTTGCA--AGACTTCCAAAA----CC----GAAAAC-CA--A----AACCAATTCCCT-TTAACC--A--GTTT-TCCATGACGAGTCGAAATA--CATGATAAAA-------TA-CA---ATATTTATCGCAG-TCGGAAAAGATGAGGAACACAGAAAACACAAATATAAC----------CGCGATTTATCAA-------TA---AT-------TCT-CAT--AATTTGCCGGTA------TCTACAGGTTGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTGTATTCGCTGAAATAT-C----G-TCG--TAT-TACTTGTTTTTATTCAAAACATCGACATT----------TCTTTT------------A-------AGGCTGAAGTTTTCGGCGAATT---TC----GG----GACTGGTTCgtcgatgttttgaataaaaacaagtaatacgacgatatttcagcgaatacagcgatttgaagcaggtaaacctgttcaataagttccatttacatttaagttttgttttcaacctgtagataccggcaaattatgagaattattgataaatcgcggttatatttgtgttttctgtgttcctcatcttttccgactgcgataaatattgtattttatcatgtatttcgactcgtcatggaaaactggttaaagggaattggttttggttttcggttttggaagtcttgcaactatttatagtgttatccagtcctggttcgtggatgaatctcttaatttgatcggtgaaatagttgattgaatgcaattggttaaacagtgccccagtgtgaagttggtaaccttgtctatatatcttaatccattttttaaactttttttttagttttatgtgttagggttagggtaaggttaaaaaaaatattattggg
gi|4 : atatgaaatcactgggaag------A-AACAA-------AGGCTT--TTTTCCGG----TG---TG----TA----TATTGACTCAATGG-GG-AACACTGGGAA----CCAG---------CTCGCC-AAAAC-TTCCGCCATTGAGAAAATtattggg
gi|4 : gacaacagaaccttcaaAAATGTTA-A-GAT-TTATCCACGAACTTG---------TTAGCACAACAAAATTGTTGCA--G--TTTCCGAAA----CC----GAAAAC-AA--ACAAAAAACAATTCCTA-TTAACC--G--TTTT--CTGTGACAAGTCTAAATG--CAT-AAAAAC------ATT-TA---ACATTTCTCGTGGGTTAGAAAGCAATTAAAACCTTCAGAATGCCATAATAAT----------C-------ACGATTTATCTATA---AT-------TCT-CCA--AATTTGCCATTAACTACTTGTACAAATTGAAAACAA--AACA-CAA--ATG-GAAATGGAATTGATTAAACAGCATTACACGCTTCAATTTTAGCTGTATTCGCTGAGCTAT-CGTC-G---G-ATTT-TTCATGTTTTTATT-GAAACAT---AA------------ACATTT------gtttatgtttcaataaaaacatgaaaaatccgacgatagctcagcgaatacagctaaaattgaagcgtgtaatgctgtttaatcaattccatttccatttgtgttttgttttcaatttgtacaagtagttaatggcaaatttggagaattatagataaatcgtgattattatggcattctgaaggttttaattgctttctaacccacgagaaatgttaaatgtttttatgcatttagacttgtcacagaaaacggttaataggaattgttttttgtttgttttcggtttcggaaactgcaacaattttgttgtgctaacaagttcgtggataaatcttaacatttagctgggtgctaaaaggagtaatgca
gi|5 : gacaacagaaccttcaaaaacaaaggcttttttccggtgtgtatattgactcaatggggaacactgggaaccagctcgccaaaacttccgccattgaga--AATTCGCCAATA------TCTAC---TTGAA------------------TG-TAAATGTAGCATATTTAACAGCATTATCCTCTTCAAATC--GTTGTATTAGCTGAACTA----TA-G-TCA-TTTTATATATATATTTATTCAAAATATC-GAA------------TTTTTTTCTTTGACAACAAAACATACAGACTT--ATATCCTG-----T---GA----T-----CACTGA--GAAC-G-GG-------GAGAA----CCAGTCCCTGAAATT-GCCAAACACTTTTCACCATCACGGAAATTagctgggtgctaaaaggagtaatgca
gi|5 : aaacgtctgtaaatcgtcggaaaacctttatTTACCTGCTTCAAATT--GCTGTATTCGC-----CACACATA---------TT-TACATGTTTTTATTAAAAATATGGAAA------------Ttccatatttttaataaaaacatgtaaatatgtgtggcgaatacagcaatttgaagcaggtaatc
gi|6 : aaacgtctgtaaatcgtcggaaaacctttataattcgccaatatctacttgaatgtaaatgtagcatatttaacagcattatcctcttcaaatcgttgtattagctgaactatagtcattttatatatatatttattcaaaatatcgaatttttttctttgacaacaaaacatacagacttatatcctgtgatcactgagaacggggagaaccagtccctgaaattgccaaacacttttcaccatcacggaaACTATAAA-TGGTTGTA--G--TTTCCGAAA----CTTTCGGAAAAC-AA--A----AATCAATTTCCT-TTGACC--G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA-------TA-CA---ATATTTATCGCAGGTCGGAAAAAATGTGAAACACAGAAAATGCCAATATAAC----------C-------ACAATTTATCAATA---AT-------TCT-CCA--AGAGTGCCGGTA------TCCATACGTTGTAAACAA--AACT-TAC--GCG-TAAATGGCACTTATTCAACATGTTTACCTGTCTCAAATT--ACTGTATT---TGAAGAAC-TATG-T-TCG-TTTT-T-CACGTTTTTATTCAAAtc
gi|7 : CACAGGCGGCAATATCGG-TGTTTGGATTACCCCCTTTACCGATTAAGAAAATGAA--ACCT-----------TTAAAAAAAAAATGGCCAGAA-AGCAAATAAAAATTAAAAAAAATTAA---CCCC--------------CC---CCCAAA-----AAAAAAAAAA--AAAGA---ATAACAAACAAAATG---TT-T---GTT----TTTGGATTTA--GATATATAAACAAGGTAACCAACACC-ACACTTGACCA-TGGTTACACTAACTGCATTCATTCAA-CTATTTCACTGATCAAAT-ATAAA-GAT-TTATCCACGAACCAGAGC---TGGTTAACA
gi|8 : -AA--A----AA-CAATTCCCA-TTAATCAAA--TTTTATC---GACAAATCGAACTG--TCTGGAATAC------AGT-CA---ACGTTCAGAATAAGTAAGAAAGCCTGTAAAATGCAAACACTG-TGGTTTATC----------A-------AG----------T----AT-------TCT-CAA--AAATTGCCAATA------TCTGGAAGTTG-AAATAATGAATT-AAA--GCACCAAATGGAATGTATTAAACAGTATAACCTGCTTCAAACC--ATAATTCTTGATGAAATAC-T----G-CCG--ATT-TACACGTTATTATTGAAAACAT
gi|9 : aTTTCACTGATCAAAT-TTAGA-GAA-TTATCCACGAGTCTGGGCTGGTGGTTACCACTTCAGA-TTGTTGTA--G--TTT---------------------C-AA--A----AAACAATTCACT-TCGACC--A--TTTT-T--ATAACAGG-CGAAATG--CATAAAAAAATTCAACATT-CA---ACATTTATCGTAGGTTGG-AAGCCCTTGGGACACTCAAAATGCCAATTTAAC----------CTTGATTTAT----------TAATGAT-------TCT-CCA--AATTTGCCAGTT------TCTCAAAGTTGATAACAA--AACT-
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTATAGATTCAACAGGTAAATTGGCATTAACAACGCATACAATAATTATAATAAAGACAAGAGAAATAT
Unaligned ( gi|22 ): TTCTTGGCATAGGTGAGAGTATCAGTGTTTAGAGGGCCCAATTTACCTGATGTTCGTCCCCCACACCC
Unaligned ( gi|25 ): TTTCCTAATAAATTGATAATTCAACAATTTATTAAATGACCAAGAAACCAGATCAAATATGA
Unaligned ( gi|29 ): AAAAAAACACTTAAGAAACCGTGGAATACAGATTAGGGTA
Unaligned ( gi|30 ): ATTAAGATGATAATAAACCAGAACTGTAGCGGGTG
Alignments
lowQualScore : 222 2222222 6666666666 1 1 333333 2222 333333333333333333 111 33333333333333333 111111 1 1 1 111 111111111111 11 11111111 1111111 999999999999999999999999 1111111 111 44444444 111 1 333333333333 22222222222222222222 4444444444444444444444 222222222 1111
lowQualScore : 333 7777777 0000000000 7 7 3 3 1 1 000000 3333 333333333333333333 6 6 444 55555555555555555 444444 99 1 3 6 0 3 0 2 0 555 0 3 3 3 555 3 44 44 333333333333 3 44 6666 99 3 3 11 8888 55 0 99999999 44 666 1 0 3 4444444 444444444444444444444444 1111111 3 44 0 999999 55 44 2 000 3 1 22 44 3 33333333 000 3 1 3 222222222222 1 77777777777777777777 99 1111111111111111111111 4 222222222 7777 88888 3 3 8 4
lowQualScore : ... ....... .......... . . . . . . ...... .... .................. . . ... ................. ...... .. . . . . . . . . ... . . . . ... . .. .. ............ . .. .... .. . . .. .... .. . ........ .. ... . . . ....... ........................ ....... . .. . ...... .. .. . ... . . .. .. . ........ ... . . . ............ . .................... .. ...................... . ......... .... ..... . . . .
lowQualScore : 666 0000000 0000000000 3 3 3 3 0 0 555555 5555 000000000000000000 7 7 000 77777777777777777 333333 22 0 7 7 0 2 0 2 5 444 1 6 6 3 444 3 66 66 444444444444 1 22 5555 55 1 1 55 2222 00 5 00000000 66 444 6 6 8 4444444 222222222222222222222222 8888888 6 66 7 666666 22 22 9 333 3 5 00 22 1 66666666 777 6 0 4 555555555555 0 88888888888888888888 22 8888888888888888888888 2 888888888 0000 66666 8 2 0 6
consensus : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATA-------TAACC---GC---TTA---A---------TAAT-------TCT-CCA--AATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTGT-AAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
Reference ( family-1587 ) : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGNAAANAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACACAAAATGCCAATA-------TAACC---AC---------A---------TAAT-------TCT-CCA--AATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTGT-AAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
gi|1 : CACAGGTGGCAGTATACG-TGTTTGGATGACCCCCTTTACCGATAAAGAAAA-AAAATCACCG---------CTTTAAAAAAA---TTGCCA-AA-AGCAAAAAAAAA------AAAATTAAACACCCCACATATTTTTTTG-CCCTTATCCTAACCCTAACACATAAAGCTAAAAA---AAAATAAAGGAA--A---CT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTAACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCATTCAATCAACCTTTTTAACCGATCAAAT-TTAGA-GAT-TTATCCACGAACCAGGGC---TGGTTAACACTATAAA-TGGTTGTA--G--TTTCCGAAA----CC----GTAAAC-AA--A----AATTAATTTCCT-TTGACC-G--TTTT-TCCGTGACATGTCGAAATG--CATGAAAAAA------ATG-CA---ATATTTATTGCAGGTTGGAAAAAATGTGGAACACAGAAAATGCAAATA-------TA-----------------A---------TAAT-------TCT-CCA--AGAGTGCCGGTA------TCCACACGTTGCAAACAA--AACT-TAA--GTGT-AAATGGAACTTATTTAACATGTTTACCGGTCTAAAATC--GCTGTATTCGAAGAAT-TACTG-TATGTTCG--TTTT-TACACGTCTTTATTCAAAACGTTGGAA------------TCATGT------A-AATAA-------AGGCTT--ATTTCCGG----TT---TA----TG----GACTCATTCAAT-GTGT-ATCACTGGGAA----CCAGTTCC-GAAATTCGCCGAAAAC-TTTTGCCGGTAAAGAAATT
gi|10 : AT-TTATTCACGAACATGGGC---TGGTAAGCACATCAAA-TGGTTATA--G--TTTCTGCAA----TT----AAAAA------A----AA-CAATTCCCT-TTAACT-G--T----------------CGAAATG--CATGAAAAA--------TC-TA---ACATTTATCAAAGGTCGGAAAATCTTTGGAAAAGTCAAAATGCCAATA-------TTACG---GCGATTTATCAA---------TAAT-------TTT-CCA--AATATGTCAGTA------TCTACAAGTTGAAAACAA--AAATGTAA---TGT-AAATGGAACTTAgaaggggtcaacgtt
gi|11 : tTAAGAATATAAAATGAGGGTA--GGTGTTATAAGGTTAATATATAGATTTA--GATATATAGACAAGGTCACC----TCGACACTGG
gi|12 : gactatatcggtgtttagaccacccaattaacatggttttcaaaagcaaaataacacaagccctgaccccacccactcaacccatttgtttttaaataaataaaatatatctatatattttatgattataC---TGGTTAACACTACGCA-TGGTTGTA--G--TTTCCGAAA----C-----GAAAAA-AACAA----AAT-AAT-CCAT-TAAACT-G--TTTA--CCGTGGAAAGTCTAAATG--CATGAACCA--------TGGCA---ATATTTATCGTAGGTCTGAAAACCTTTGGACCACACAAAATGCCAATA-------TGATC---GCT--------A---------TAAT-------TTA-TCAATAATTTa
gi|13 : atacttaaaaaaacacaaaatcaTGCCGGTA------TCCACATGTTGCAAGCAA--AACT-TAA--GTGT-AAATGGAACTTATTTAACAGATTTACCTGTCTCAAATC--GCTGTATTCAAAGAAC-TAT-G-T----TCG--TTTT-CATACGTTTTAATTCAAAACTTTGGAA------------TCATGT------A-AATAA-------AGGCTT--GTTTCCGG----TTAAATAGGCTTGTTTCCATTTATTAAAT-A-GGTATCACTGGttcgag
gi|14 : CGTTTAATCAATC-ATCGCACTTATCAT-T-TTAGA-GAA-TTGTCCACGACCTTGGAC---TGATTAAAA-TACAAA-AGATTGTT--G--TTTCTGAAA----CT----GGAAATTAA--A----ACTTAATTTCGC-GCAATCTG--ATTT-TAGG-GACAAGTCGAAATGTCCAC---AAAA------ATC-AA---AAACTCGGAGCAGATTGGAAAAGCTTTGTAACACACAA
gi|15 : cGGCTA-ACCAACT-CGTTTTATCAAC-TATTTCACTGATCAAAT-TTAGACCAT-TT-TTCACGAATACGAAC---TGGTTAGCATTACAAA-TGGTTGCACCG--TTTCTGAAATCGTCC----AAAAGC-CA--A----AATCAATTCCCCAGCAACC-GT-TTTT-TCTGCGAAAAGTCGAA
gi|16 : caaggtcatgtataataaAGGCGGCAGTATC-GACGTTTGAATTACCCCCTTAACCGATAAAGAAA---AA-TCACCTCCCCCCCCCCTTT---AAAAAAATTACTA-AATAGGAAAAAAAAA
gi|16 : ccaAAAAA---AAAAGGGGGGAA--A-------AAGGGT----TATGGATTTA--GATATATAGACAAGGTTACCAACTTC-ACACTGAGCCggggggaaaaagggttatggatttagatatatagacaaggttaccaacttcacactgagcccatag
gi|17 : ccaaggcggcagtatcgacgtttgaattacccccttaaccgataaagaaaaatcacctcccccccccctttaaaaaaattactaaataggAT-TTAAA-AAT-TTATCCATGAACCTGGGC---TGGTTAATCCTACAAA-TGGTTGTA--G--TTTCAGCAA----CC----GAAAGC-AT--A----AG-CAATTCCCA-TTAACC-A--TTTT-TCCGTGATAAGTTGAAAGT--CATG--AAAA------ATC-CA---ACATTTATTGTAGGTCAGAAAcatag
gi|18 : tAT-------TCT-CCA--AATTTGCTAGTA------TCTACGAGTTGAAAACAA--AACA-TAG--ATAT-AAATCGAACTTATTTAACAGCGTTACACGTTTCCAATC--GCTGTATTCGCTGTAT-TATC---A---TCGA-TTTT-TCCAAATTTT
gi|19 : agatttatcaagcACTA-AAA-TGGTTGTA--G--TTTACAAAA----C----------C-AA--A----AAT-AGTTCGTT-TAAACC-GTATTTT-TCTGTGACAAGc
gi|2 : tccagcccagcaaaagtttccatgatgatatacaactggcCACAACCGACAGTATCCG-TGTTAAGACCACCCGATTTACCtggct
gi|2 : -TAGGGGT----TATAGGGTTATTGAT-TA-AGACAAGGTTATCAACACG-ACAATGGACCA-AGGTTATACTAACT---------------ATTTATCTAATCAAAT-TTAGA-GAT-TTATTCACAAACCTGGGC---TGGTTAGCACTACCAA-TGATAGTA--G--TTTTCGAAA----CC------------A--A----AATAAGTTTCCT-TTAAAC-G--TTTT--CCGTGATAAGTCGAAATG--CATGAAAAAA------ATC-TATTAATATTGATCGTCGGTCGGATAACCTTTAGAACAGTCGAATTGCCAATA-------TAACT---GC---------GAT-------TAATCAGTACGTAT-TCA--A---TGGCACTA------ACTATGAGATGAAAACAA--AACT-TAA--ATGT-AAATGGAACTTATTTCACAGCATTACCCGTTTCAAATC--TCTGTATTCGCTGAAT-TATCGAAG---TTG--TTTT-T--ACTTTTTCATTCAAAACCACGGAACCTATTCCTCACTCACAT------A-ACCAT-------AGGCTT--GTATCCGG----TG---TA----TG----CATTGACTCAA------------TGGGAA----CCAGATCT-GAAA-TCGCTGAGAA--TTCCGCCATTGAAGAAATTtgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaatttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|2 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattaTACCC-CCTCAAATC--GCTGTATTCGCTGGGC-TATC---A---TCG--TTTT-T-TATGCTTTTATTCAAAACATCGAAA------------Ttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|20 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaCAA--AACT-TAAAAGTTT-AA-TGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTAAATTCGCTGAAA-TATCG-Tttgttg
gi|23 : aaaacaaaatcgggcgTTCAATCAACTT-TTTCTCTGATCAAAT-TTAGA-TAT-TTATCCATCAACCTGGGC---TGG
gi|24 : cacccatttttCT-TAA---TGC-TAACAGAACTTATTTTACAACATTATTCACTTCAAATC--TATGCATTGGCTGAAC-T
gi|26 : CACAAGTGACAGTATCC-ATGTTTAGATTACCCTCCTTACC
gi|27 : cTCATTCAAC-TATTTCACT----AGAT---AGA-GAAACTATCCTCGAACATAGGC---TGGTTAACAtgagcccccaaagcaaaaaca
gi|28 : T-------TCTTCCA--AATTTGCAAGTA------TCTAAGAGTTGAAAACAA--AGCT-T
gi|3 : AT-G-AA-ATCACTGGGAAGGAACCAGTCCC-GAAATTCGCCGAAAAC-TTCAGCCTTAAAAGAAAT
gi|3 : atATAT-TTTTTTTAACC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAA----------G---TT-TAAAAA------ATGGATTAA--GATATATAGACAAGGTTACCAACTTC-ACACTGGGGCACTGTTTA-ACCAATTGCATTCAATCAAC-TATTTCACCGATCAAAT-TAAGA-GAT-TCATCCACGAACCAGGAC---TGGATAACACTATAAA-TAGTTGCA--AGACTTCCAAAA----CC----GAAAAC-CA--A----AACCAATTCCCT-TTAACC-A--GTTT-TCCATGACGAGTCGAAATA--CATGATAAAA-------TA-CA---ATATTTATCGCAG-TCGGAAAAGATGAGGAACACAGAAAACACAAATA-------TAACC---GCGATTTATCAA---------TAAT-------TCT-CAT--AATTTGCCGGTA------TCTACAGGTTGAAAACAA--AACT-TAA--ATGT-AAATGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTGTATTCGCTGAAA-TATC---G---TCG---TAT-TACTTGTTTTTATTCAAAACATCGACATT----------TCTTTT------------A-------AGGCTGAAGTTTTCGGCGAATT---TC----GG----GACTGGTTCgtcgatgttttgaataaaaacaagtaatacgacgatatttcagcgaatacagcgatttgaagcaggtaaacctgttcaataagttccatttacatttaagttttgttttcaacctgtagataccggcaaattatgagaattattgataaatcgcggttatatttgtgttttctgtgttcctcatcttttccgactgcgataaatattgtattttatcatgtatttcgactcgtcatggaaaactggttaaagggaattggttttggttttcggttttggaagtcttgcaactatttatagtgttatccagtcctggttcgtggatgaatctcttaatttgatcggtgaaatagttgattgaatgcaattggttaaacagtgccccagtgtgaagttggtaaccttgtctatatatcttaatccattttttaaactttttttttagttttatgtgttagggttagggtaaggttaaaaaaaatattattggg
gi|4 : atatgaaatcactgggaag------A-AACAA-------AGGCTT--TTTTCCGG----TG---TG----TA----TATTGACTCAATGG-GG-AACACTGGGAA----CCAG---------CTCGCC-AAAAC-TTCCGCCATTGAGAAAATtattggg
gi|4 : gacaacagaaccttcaaAAATGTTA-A-GAT-TTATCCACGAACTTG---------TTAGCACAACAAAATTGTTGCA--G--TTTCCGAAA----CC----GAAAAC-AA--ACAAAAAACAATTCCTA-TTAACC-G--TTTT--CTGTGACAAGTCTAAATG--CAT-AAAAAC------ATT-TA---ACATTTCTCGTGGGTTAGAAAGCAATTAAAACCTTCAGAATGCCATAA-------TAATC---ACGATTTATCTA---------TAAT-------TCT-CCA--AATTTGCCATTAACTACTTGTACAAATTGAAAACAA--AACA-CAA--ATGG-AAATGGAATTGATTAAACAGCATTACACGCTTCAATTTTAGCTGTATTCGCTGAGC-TATC---G---TCGGATTTT-T-CATGTTTTTATT-GAAACAT---AA------------ACATTT------gtttatgtttcaataaaaacatgaaaaatccgacgatagctcagcgaatacagctaaaattgaagcgtgtaatgctgtttaatcaattccatttccatttgtgttttgttttcaatttgtacaagtagttaatggcaaatttggagaattatagataaatcgtgattattatggcattctgaaggttttaattgctttctaacccacgagaaatgttaaatgtttttatgcatttagacttgtcacagaaaacggttaataggaattgttttttgtttgttttcggtttcggaaactgcaacaattttgttgtgctaacaagttcgtggataaatcttaacatttagctgggtgctaaaaggagtaatgca
gi|5 : gacaacagaaccttcaaaaacaaaggcttttttccggtgtgtatattgactcaatggggaacactgggaaccagctcgccaaaacttccgccattgaga--AATTCGCCAATA------TCTAC---TTGAA------------------TGT-AAATGTAGCATATTTAACAGCATTATCCTCTTCAAATC--GTTGTATTAGCTGAAC-TATA---G---TCA--TTTTATATATATATTTATTCAAAATATC-GAA------------TTTTTTTCTTTGACAACAAAACATACAGACTT--ATATCCTG-----T---GA----T-----CACTGA--GAAC-G-GG-------GAGAA----CCAGTCCCTGAAATT-GCCAAACACTTTTCACCATCACGGAAATTagctgggtgctaaaaggagtaatgca
gi|5 : aaacgtctgtaaatcgtcggaaaacctttatTTACCTGCTTCAAATT--GCTGTATTCGCCACACATA----------------TT-TACATGTTTTTATTAAAAATATGGAAA------------Ttccatatttttaataaaaacatgtaaatatgtgtggcgaatacagcaatttgaagcaggtaatc
gi|6 : aaacgtctgtaaatcgtcggaaaacctttataattcgccaatatctacttgaatgtaaatgtagcatatttaacagcattatcctcttcaaatcgttgtattagctgaactatagtcattttatatatatatttattcaaaatatcgaatttttttctttgacaacaaaacatacagacttatatcctgtgatcactgagaacggggagaaccagtccctgaaattgccaaacacttttcaccatcacggaaACTATAAA-TGGTTGTA--G--TTTCCGAAA----CTTTCGGAAAAC-AA--A----AATCAATTTCCT-TTGACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA-------TA-CA---ATATTTATCGCAGGTCGGAAAAAATGTGAAACACAGAAAATGCCAATA-------TAACC---AC---------AATTTATCAATAAT-------TCT-CCA--AGAGTGCCGGTA------TCCATACGTTGTAAACAA--AACT-TAC--GCGT-AAATGGCACTTATTCAACATGTTTACCTGTCTCAAATT--ACTGTATTTGAAGAAC-TAT-G-T----TCG--TTTT-T-CACGTTTTTATTCAAAtc
gi|7 : CACAGGCGGCAATATC-GGTGTTTGGATTACCCCCTTTACCGATTAAGAAAATGAA---ACCT-----------TTAAAAAAAAAATGGCCAGAA-AGCAAATAAAAATTAAAAAAAATTAA----CCC--------------CC----CCCCAA----AAAAAAAAAAA--AAAGA---ATAACAAACAAAATG---TT-T---GTT----TTTGGATTTA--GATATATAAACAAGGTAACCAACACC-ACACTTGACCA-TGGTTACACTAACTGCATTCATTCAA-CTATTTCACTGATCAAAT-ATAAA-GAT-TTATCCACGAACCAGAGC---TGGTTAACA
gi|8 : -AA--A----AA-CAATTCCCA-TTAATC-AAATTTTATC---GACAAATCGAACTG--TCTGGAATAC------AGT-CA---ACGTTCAGAATAAGTAAGAAAGCCTGT---------AAAATGCAAACACTGTGGTTTATC---AA---------G---------TA-T-------TCT-CAA--AAATTGCCAATA------TCTGGAAGTTGAAA-TAATGAATT-AAA--GCACCAAATGGAATGTATTAAACAGTATAACCTGCTTCAAACC--ATAATTCTTGATGAAA-TAC---TG---CCG---ATT-TACACGTTATTATTGAAAACAT
gi|9 : aATTTCACTGATCAAAT-TTAGA-GAA-TTATCCACGAGTCTGGGCTGGTGGTTACCACTTCAGA-TTGTTGTA--G--TTT---------------------C-AA--A----AAACAATTCACT-TCGACC-A--TTTT-T--ATAACAGG-CGAAATG--CATAAAAAAATTCAACATT-CA---ACATTTATCGTAGGTTGG-AAGCCCTTGGGACACTCAAAATGCCAATT-------TAACCTTGATTTATTA---A---------TGAT-------TCT-CCA--AATTTGCCAGTT------TCTCAAAGTTGATAACAA--AACT-
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTATAGATTCAACAGGTAAATTGGCATTAACAACGCATACAATAATTATAATAAAGACAAGAGAAATAT
Unaligned ( gi|22 ): TTCTTGGCATAGGTGAGAGTATCAGTGTTTAGAGGGCCCAATTTACCTGATGTTCGTCCCCCACACCC
Unaligned ( gi|25 ): TTTCCTAATAAATTGATAATTCAACAATTTATTAAATGACCAAGAAACCAGATCAAATATGA
Unaligned ( gi|29 ): AAAAAAACACTTAAGAAACCGTGGAATACAGATTAGGGTA
Unaligned ( gi|30 ): ATTAAGATGATAATAAACCAGAACTGTAGCGGGTG
Alignments
lowQualScore : 222 2222222 6666666666 1 1 333333 2222 333333333333333333 111 33333333333333333 111111 1 1 1 111 111111111111 11111111 666666 111 44444444 111 1 333333333333 22222222222222222222 4444444444444444444444 222222222 1111
lowQualScore : 333 7777777 0000000000 7 7 3 3 000000 3333 333333333333333333 6 6 444 55555555555555555 444444 99 1 3 6 0 3 0 2 0 555 0 3 3 3 555 3 44 44 333333333333 3 44 6666 99 3 99999 8888 55 0 99999999 44 666 1 0 2 1 0 555555 1 777 4 777 666 3 44 0 999999 55 1 44 2 000 3 1 22 44 3 33333333 000 3 1 3 222222222222 1 77777777777777777777 99 1111111111111111111111 4 222222222 7777 88888 3 3 8 4
lowQualScore : ... ....... .......... . . . . ...... .... .................. . . ... ................. ...... .. . . . . . . . . ... . . . . ... . .. .. ............ . .. .... .. . ..... .... .. . ........ .. ... . . . . . ...... . ... . ... ... . .. . ...... .. . .. . ... . . .. .. . ........ ... . . . ............ . .................... .. ...................... . ......... .... ..... . . . .
lowQualScore : 666 0000000 0000000000 3 3 3 3 555555 5555 000000000000000000 7 7 000 77777777777777777 333333 22 0 7 7 0 2 0 2 5 444 1 6 6 3 444 3 66 66 444444444444 1 22 5555 55 1 55555 2222 00 5 00000000 66 444 6 6 4 1 1 000000 4 888 4 000 444 6 66 7 666666 22 2 22 9 333 3 5 00 22 1 66666666 777 6 0 4 555555555555 0 88888888888888888888 22 8888888888888888888888 2 888888888 0000 66666 8 2 0 6
consensus : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC--G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGCGATTTATTA---AT-A---AT---TCT-CCA--AATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
Reference ( family-1587 ) : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC--G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC------TTA---AT-A---AT---TCT-CCA--AATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
gi|1 : CACAGGTGGCAGTATACG-TGTTTGGATGACCCCCTTTACCGATAAAGAAAA-AAAATCACCG---------CTTTAAAAAAA---TTGCCA-AA-AGCAAAAAAAAA------AAAATTAAACACCCCACATATTTTTTTG-CCCTTATCCTAACCCTAACACATAAAGCTAAAAA---AAAATAAAGGAA--A---CT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTAACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCATTCAATCAACCTTTTTAACCGATCAAAT-TTAGA-GAT-TTATCCACGAACCAGGGC---TGGTTAACACTATAAA-TGGTTGTA--G--TTTCCGAAA----CC----GTAAAC-AA--A----AATTAATTTCCT-TTGACC--G--TTTT-TCCGTGACATGTCGAAATG--CATGAAAAAA------ATG-CA---ATATTTATTGCAGGTTGGAAAAAATGTGGAACACAGAAAATGCAAATA--------------TA---AT-A---AT---TCT-CCA--AGAGTGCCGGTA------TCCACACGTTGCAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACATGTTTACCGGTCTAAAATC--GCTGTATTCGAAGAAT-TACTG-TATGTTCG--TTTT-TACACGTCTTTATTCAAAACGTTGGAA------------TCATGT------A-AATAA-------AGGCTT--ATTTCCGG----TT---TA----TG----GACTCATTCAAT-GTGT-ATCACTGGGAA----CCAGTTCC-GAAATTCGCCGAAAAC-TTTTGCCGGTAAAGAAATT
gi|10 : AT-TTATTCACGAACATGGGC---TGGTAAGCACATCAAA-TGGTTATA--G--TTTCTGCAA----TT----AAAAA------A----AA-CAATTCCCT-TTAACT--G--T----------------CGAAATG--CATGAAAAA--------TC-TA---ACATTTATCAAAGGTCGGAAAATCTTTGGAAAAGTCAAAATGCCAATATTACGGCGATTTATCA---AT-A---AT---TTT-CCA--AATATGTCAGTA------TCTACAAGTTGAAAACAA--AAATGTAA---TG-TAAATGGAACTTAgaaggggtcaacgtt
gi|11 : tTAAGAATATAAAATGAGGGTA--GGTGTTATAAGGTTAATATATAGATTTA--GATATATAGACAAGGTCACC----TCGACACTGG
gi|12 : gactatatcggtgtttagaccacccaattaacatggttttcaaaagcaaaataacacaagccctgaccccacccactcaacccatttgtttttaaataaataaaatatatctatatattttatgattataC---TGGTTAACACTACGCA-TGGTTGTA--G--TTTCCGAAA----C-----GAAAAA-AACAA----AAT-AAT-CCAT-TAAACT--G--TTTA--CCGTGGAAAGTCTAAATG--CATGAACCA--------TGGCA---ATATTTATCGTAGGTCTGAAAACCTTTGGACCACACAAAATGCCAATATGATCGC------T-----AT-A---AT---TTA-TCAATAATTTa
gi|13 : atacttaaaaaaacacaaaatcaTGCCGGTA------TCCACATGTTGCAAGCAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGATTTACCTGTCTCAAATC--GCTGTATTCAAAGAAC-TAT-G-T----TCG--TTTT-CATACGTTTTAATTCAAAACTTTGGAA------------TCATGT------A-AATAA-------AGGCTT--GTTTCCGG----TTAAATAGGCTTGTTTCCATTTATTAAAT-A-GGTATCACTGGttcgag
gi|14 : CGTTTAATCAATC-ATCGCACTTATCAT-T-TTAGA-GAA-TTGTCCACGACCTTGGAC---TGATTAAAA-TACAAA-AGATTGTT--G--TTTCTGAAA----CT----GGAAATTAA--A----ACTTAATTTCGC-GCAATCT-G--ATTT-TAGG-GACAAGTCGAAATGTCCAC---AAAA------ATC-AA---AAACTCGGAGCAGATTGGAAAAGCTTTGTAACACACAA
gi|15 : cGGCTA-ACCAACT-CGTTTTATCAAC-TATTTCACTGATCAAAT-TTAGACCAT-TT-TTCACGAATACGAAC---TGGTTAGCATTACAAA-TGGTTGCACCG--TTTCTGAAATCGTCC----AAAAGC-CA--A----AATCAATTCCCCAGCAACC--GT-TTTT-TCTGCGAAAAGTCGAA
gi|16 : caaggtcatgtataataaAGGCGGCAGTATC-GACGTTTGAATTACCCCCTTAACCGATAAAGAAA---AA-TCACCTCCCCCCCCCCTTT---AAAAAAATTACTA-AATAGGAAAAAAAAA
gi|16 : ccaAAAAA---AAAAGGGGGGAA--A-------AAGGGT----TATGGATTTA--GATATATAGACAAGGTTACCAACTTC-ACACTGAGCCggggggaaaaagggttatggatttagatatatagacaaggttaccaacttcacactgagcccatag
gi|17 : ccaaggcggcagtatcgacgtttgaattacccccttaaccgataaagaaaaatcacctcccccccccctttaaaaaaattactaaataggAT-TTAAA-AAT-TTATCCATGAACCTGGGC---TGGTTAATCCTACAAA-TGGTTGTA--G--TTTCAGCAA----CC----GAAAGC-AT--A----AG-CAATTCCCA-TTAACC--A--TTTT-TCCGTGATAAGTTGAAAGT--CATG--AAAA------ATC-CA---ACATTTATTGTAGGTCAGAAAcatag
gi|18 : t---AT---TCT-CCA--AATTTGCTAGTA------TCTACGAGTTGAAAACAA--AACA-TAG--ATA-TAAATCGAACTTATTTAACAGCGTTACACGTTTCCAATC--GCTGTATTCGCTGTAT-TATC---A---TCGA-TTTT-TCCAAATTTT
gi|19 : agatttatcaagcACTA-AAA-TGGTTGTA--G--TTTACAAAA----C----------C-AA--A----AAT-AGTTCGTT-TAAACC--GTATTTT-TCTGTGACAAGc
gi|2 : tccagcccagcaaaagtttccatgatgatatacaactggcCACAACCGACAGTATCCG-TGTTAAGACCACCCGATTTACCtggct
gi|2 : -TAGGGGT----TATAGGGTTATTGAT-TA-AGACAAGGTTATCAACACG-ACAATGGACCA-AGGTTATACTAACT---------------ATTTATCTAATCAAAT-TTAGA-GAT-TTATTCACAAACCTGGGC---TGGTTAGCACTACCAA-TGATAGTA--G--TTTTCGAAA----CC------------A--A----AATAAGTTTCCT-TTAAAC--G--TTTT--CCGTGATAAGTCGAAATG--CATGAAAAAA------ATC-TATTAATATTGATCGTCGGTCGGATAACCTTTAGAACAGTCGAATTGCCAATATAACTGCGA----TTA---ATCA---GTACGTAT-TCA--A---TGGCACTA------ACTATGAGATGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTTCACAGCATTACCCGTTTCAAATC--TCTGTATTCGCTGAAT-TATCGAAG---TTG--TTTT-T--ACTTTTTCATTCAAAACCACGGAACCTATTCCTCACTCACAT------A-ACCAT-------AGGCTT--GTATCCGG----TG---TA----TG----CATTGACTCAA------------TGGGAA----CCAGATCT-GAAA-TCGCTGAGAA--TTCCGCCATTGAAGAAATTtgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaatttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|2 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattaTACCC-CCTCAAATC--GCTGTATTCGCTGGGC-TATC---A---TCG--TTTT-T-TATGCTTTTATTCAAAACATCGAAA------------Ttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|20 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaCAA--AACT-TAAAAGTT-TAA-TGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTAAATTCGCTGAAA-TATCG-Tttgttg
gi|23 : aaaacaaaatcgggcgTTCAATCAACTT-TTTCTCTGATCAAAT-TTAGA-TAT-TTATCCATCAACCTGGGC---TGG
gi|24 : cacccatttttCT-TAA---TG-CTAACAGAACTTATTTTACAACATTATTCACTTCAAATC--TATGCATTGGCTGAAC-T
gi|26 : CACAAGTGACAGTATCC-ATGTTTAGATTACCCTCCTTACC
gi|27 : cTCATTCAAC-TATTTCACT----AGAT---AGA-GAAACTATCCTCGAACATAGGC---TGGTTAACAtgagcccccaaagcaaaaaca
gi|28 : T---TCTTCCA--AATTTGCAAGTA------TCTAAGAGTTGAAAACAA--AGCT-T
gi|3 : AT-G-AA-ATCACTGGGAAGGAACCAGTCCC-GAAATTCGCCGAAAAC-TTCAGCCTTAAAAGAAAT
gi|3 : atATAT-TTTTTTTAACC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAA----------G---TT-TAAAAA------ATGGATTAA--GATATATAGACAAGGTTACCAACTTC-ACACTGGGGCACTGTTTA-ACCAATTGCATTCAATCAAC-TATTTCACCGATCAAAT-TAAGA-GAT-TCATCCACGAACCAGGAC---TGGATAACACTATAAA-TAGTTGCA--AGACTTCCAAAA----CC----GAAAAC-CA--A----AACCAATTCCCT-TTAACC--A--GTTT-TCCATGACGAGTCGAAATA--CATGATAAAA-------TA-CA---ATATTTATCGCAG-TCGGAAAAGATGAGGAACACAGAAAACACAAATATAACCGCGATTTATCA---AT-A---AT---TCT-CAT--AATTTGCCGGTA------TCTACAGGTTGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTGTATTCGCTGAAA-TATC---G---TCG---TAT-TACTTGTTTTTATTCAAAACATCGACATT----------TCTTTT------------A-------AGGCTGAAGTTTTCGGCGAATT---TC----GG----GACTGGTTCgtcgatgttttgaataaaaacaagtaatacgacgatatttcagcgaatacagcgatttgaagcaggtaaacctgttcaataagttccatttacatttaagttttgttttcaacctgtagataccggcaaattatgagaattattgataaatcgcggttatatttgtgttttctgtgttcctcatcttttccgactgcgataaatattgtattttatcatgtatttcgactcgtcatggaaaactggttaaagggaattggttttggttttcggttttggaagtcttgcaactatttatagtgttatccagtcctggttcgtggatgaatctcttaatttgatcggtgaaatagttgattgaatgcaattggttaaacagtgccccagtgtgaagttggtaaccttgtctatatatcttaatccattttttaaactttttttttagttttatgtgttagggttagggtaaggttaaaaaaaatattattggg
gi|4 : atatgaaatcactgggaag------A-AACAA-------AGGCTT--TTTTCCGG----TG---TG----TA----TATTGACTCAATGG-GG-AACACTGGGAA----CCAG---------CTCGCC-AAAAC-TTCCGCCATTGAGAAAATtattggg
gi|4 : gacaacagaaccttcaaAAATGTTA-A-GAT-TTATCCACGAACTTG---------TTAGCACAACAAAATTGTTGCA--G--TTTCCGAAA----CC----GAAAAC-AA--ACAAAAAACAATTCCTA-TTAACC--G--TTTT--CTGTGACAAGTCTAAATG--CAT-AAAAAC------ATT-TA---ACATTTCTCGTGGGTTAGAAAGCAATTAAAACCTTCAGAATGCCATAATAATCACGAT---TTATCTAT-A---AT---TCT-CCA--AATTTGCCATTAACTACTTGTACAAATTGAAAACAA--AACA-CAA--ATG-GAAATGGAATTGATTAAACAGCATTACACGCTTCAATTTTAGCTGTATTCGCTGAGC-TATC---G---TCGGATTTT-T-CATGTTTTTATT-GAAACAT---AA------------ACATTT------gtttatgtttcaataaaaacatgaaaaatccgacgatagctcagcgaatacagctaaaattgaagcgtgtaatgctgtttaatcaattccatttccatttgtgttttgttttcaatttgtacaagtagttaatggcaaatttggagaattatagataaatcgtgattattatggcattctgaaggttttaattgctttctaacccacgagaaatgttaaatgtttttatgcatttagacttgtcacagaaaacggttaataggaattgttttttgtttgttttcggtttcggaaactgcaacaattttgttgtgctaacaagttcgtggataaatcttaacatttagctgggtgctaaaaggagtaatgca
gi|5 : gacaacagaaccttcaaaaacaaaggcttttttccggtgtgtatattgactcaatggggaacactgggaaccagctcgccaaaacttccgccattgaga--AATTCGCCAATA------TCTAC---TTGAA------------------TG-TAAATGTAGCATATTTAACAGCATTATCCTCTTCAAATC--GTTGTATTAGCTGAAC-TATA---G---TCA--TTTTATATATATATTTATTCAAAATATC-GAA------------TTTTTTTCTTTGACAACAAAACATACAGACTT--ATATCCTG-----T---GA----T-----CACTGA--GAAC-G-GG-------GAGAA----CCAGTCCCTGAAATT-GCCAAACACTTTTCACCATCACGGAAATTagctgggtgctaaaaggagtaatgca
gi|5 : aaacgtctgtaaatcgtcggaaaacctttatTTACCTGCTTCAAATT--GCTGTATTCGCCACACATA----------------TT-TACATGTTTTTATTAAAAATATGGAAA------------Ttccatatttttaataaaaacatgtaaatatgtgtggcgaatacagcaatttgaagcaggtaatc
gi|6 : aaacgtctgtaaatcgtcggaaaacctttataattcgccaatatctacttgaatgtaaatgtagcatatttaacagcattatcctcttcaaatcgttgtattagctgaactatagtcattttatatatatatttattcaaaatatcgaatttttttctttgacaacaaaacatacagacttatatcctgtgatcactgagaacggggagaaccagtccctgaaattgccaaacacttttcaccatcacggaaACTATAAA-TGGTTGTA--G--TTTCCGAAA----CTTTCGGAAAAC-AA--A----AATCAATTTCCT-TTGACC--G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA-------TA-CA---ATATTTATCGCAGGTCGGAAAAAATGTGAAACACAGAAAATGCCAATATAACCACAATTTATCA---AT-A---AT---TCT-CCA--AGAGTGCCGGTA------TCCATACGTTGTAAACAA--AACT-TAC--GCG-TAAATGGCACTTATTCAACATGTTTACCTGTCTCAAATT--ACTGTATTTGAAGAAC-TAT-G-T----TCG--TTTT-T-CACGTTTTTATTCAAAtc
gi|7 : CACAGGCGGCAATATC-GGTGTTTGGATTACCCCCTTTACCGATTAAGAAAATGAA---ACCT-----------TTAAAAAAAAAATGGCCAGAA-AGCAAATAAAAATTAAAAAAAATTAA----CCC--------------CC----CCCCAA----AAAAAAAAAAA--AAAGA---ATAACAAACAAAATG---TT-T---GTT----TTTGGATTTA--GATATATAAACAAGGTAACCAACACC-ACACTTGACCA-TGGTTACACTAACTGCATTCATTCAA-CTATTTCACTGATCAAAT-ATAAA-GAT-TTATCCACGAACCAGAGC---TGGTTAACA
gi|8 : -AA--A----AA-CAATTCCCA-TTAATCAAA--TTTTATC---GACAAATCGAACTG--TCTGGAATAC------AGT-CA---ACGTTCAGAATAAGTAAGAAAGCCTGT---------AAAATGCAAACACTGTGGT------TTA---TC-AAGTAT---TCT-CAA--AAATTGCCAATA------TCTGGAAGTTG-AAATAATGAATT-AAA--GCACCAAATGGAATGTATTAAACAGTATAACCTGCTTCAAACC--ATAATTCTTGATGAAA-TAC---TG---CCG---ATT-TACACGTTATTATTGAAAACAT
gi|9 : aATTTCACTGATCAAAT-TTAGA-GAA-TTATCCACGAGTCTGGGCTGGTGGTTACCACTTCAGA-TTGTTGTA--G--TTT---------------------C-AA--A----AAACAATTCACT-TCGACC--A--TTTT-T--ATAACAGG-CGAAATG--CATAAAAAAATTCAACATT-CA---ACATTTATCGTAGGTTGG-AAGCCCTTGGGACACTCAAAATGCCAATTTAACCTTGATTTATTA---AT-G---AT---TCT-CCA--AATTTGCCAGTT------TCTCAAAGTTGATAACAA--AACT-
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTATAGATTCAACAGGTAAATTGGCATTAACAACGCATACAATAATTATAATAAAGACAAGAGAAATAT
Unaligned ( gi|22 ): TTCTTGGCATAGGTGAGAGTATCAGTGTTTAGAGGGCCCAATTTACCTGATGTTCGTCCCCCACACCC
Unaligned ( gi|25 ): TTTCCTAATAAATTGATAATTCAACAATTTATTAAATGACCAAGAAACCAGATCAAATATGA
Unaligned ( gi|29 ): AAAAAAACACTTAAGAAACCGTGGAATACAGATTAGGGTA
Unaligned ( gi|30 ): ATTAAGATGATAATAAACCAGAACTGTAGCGGGTG
Alignments
lowQualScore : 222 2222222 6666666666 1 1 333333 2222 333333333333333333 111 33333333333333333 111111 1 1 1 111 111111111111 11 11111111 111 44444444 111 1 333333333333 22222222222222222222 4444444444444444444444 222222222 1111
lowQualScore : 333 7777777 0000000000 7 7 3 3 000000 3333 333333333333333333 6 6 444 55555555555555555 444444 99 1 3 6 0 3 0 2 0 555 0 3 3 3 555 3 44 44 333333333333 3 44 6666 99 3 3 11 8888 55 0 99999999 44 666 1 0 2 22 777 3 3 0 0 999999 55 1 44 2 000 3 1 22 44 3 33333333 000 3 1 3 222222222222 1 77777777777777777777 99 1111111111111111111111 4 222222222 7777 88888 3 3 8 4
lowQualScore : ... ....... .......... . . . . ...... .... .................. . . ... ................. ...... .. . . . . . . . . ... . . . . ... . .. .. ............ . .. .... .. . . .. .... .. . ........ .. ... . . . .. ... . . . . ...... .. . .. . ... . . .. .. . ........ ... . . . ............ . .................... .. ...................... . ......... .... ..... . . . .
lowQualScore : 666 0000000 0000000000 3 3 3 3 555555 5555 000000000000000000 7 7 000 77777777777777777 333333 22 0 7 7 0 2 0 2 5 444 1 6 6 3 444 3 66 66 444444444444 1 22 5555 55 1 1 55 2222 00 5 00000000 66 444 6 6 4 88 000 0 6 3 7 666666 22 2 22 9 333 3 5 00 22 1 66666666 777 6 0 4 555555555555 0 88888888888888888888 22 8888888888888888888888 2 888888888 0000 66666 8 2 0 6
consensus : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATCAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
Reference ( family-1587 ) : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATTAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
gi|1 : CACAGGTGGCAGTATACG-TGTTTGGATGACCCCCTTTACCGATAAAGAAAA-AAAATCACCG---------CTTTAAAAAAA---TTGCCA-AA-AGCAAAAAAAAA------AAAATTAAACACCCCACATATTTTTTTG-CCCTTATCCTAACCCTAACACATAAAGCTAAAAA---AAAATAAAGGAA--A---CT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTAACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCATTCAATCAACCTTTTTAACCGATCAAAT-TTAGA-GAT-TTATCCACGAACCAGGGC---TGGTTAACACTATAAA-TGGTTGTA--G--TTTCCGAAA----CC----GTAAAC-AA--A----AATTAATTTCCT-TTGACC-G--TTTT-TCCGTGACATGTCGAAATG--CATGAAAAAA------ATG-CA---ATATTTATTGCAGGTTGGAAAAAATGTGGAACACAGAAAATGCAAATA-----------------TAATAATTCT-CCAAGAGTGCCGGTA------TCCACACGTTGCAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACATGTTTACCGGTCTAAAATC--GCTGTATTCGAAGAAT-TACTG-TATGTTCG--TTTT-TACACGTCTTTATTCAAAACGTTGGAA------------TCATGT------A-AATAA-------AGGCTT--ATTTCCGG----TT---TA----TG----GACTCATTCAAT-GTGT-ATCACTGGGAA----CCAGTTCC-GAAATTCGCCGAAAAC-TTTTGCCGGTAAAGAAATT
gi|10 : AT-TTATTCACGAACATGGGC---TGGTAAGCACATCAAA-TGGTTATA--G--TTTCTGCAA----TT----AAAAA------A----AA-CAATTCCCT-TTAACT-G--T----------------CGAAATG--CATGAAAAA--------TC-TA---ACATTTATCAAAGGTCGGAAAATCTTTGGAAAAGTCAAAATGCCAATATTACGGC---GATTTATCAATAATTTT-CCAAATATGTCAGTA------TCTACAAGTTGAAAACAA--AAATGTAA---TG-TAAATGGAACTTAgaaggggtcaacgtt
gi|11 : tTAAGAATATAAAATGAGGGTA--GGTGTTATAAGGTTAATATATAGATTTA--GATATATAGACAAGGTCACC----TCGACACTGG
gi|12 : gactatatcggtgtttagaccacccaattaacatggttttcaaaagcaaaataacacaagccctgaccccacccactcaacccatttgtttttaaataaataaaatatatctatatattttatgattataC---TGGTTAACACTACGCA-TGGTTGTA--G--TTTCCGAAA----C-----GAAAAA-AACAA----AAT-AAT-CCAT-TAAACT-G--TTTA--CCGTGGAAAGTCTAAATG--CATGAACCA--------TGGCA---ATATTTATCGTAGGTCTGAAAACCTTTGGACCACACAAAATGCCAATATGATCGCTATAATTTATCAATAATTTT-TCGAa
gi|13 : atacttaaaaaaacacaaaatcaTGCCGGTA------TCCACATGTTGCAAGCAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGATTTACCTGTCTCAAATC--GCTGTATTCAAAGAAC-TAT-G-T----TCG--TTTT-CATACGTTTTAATTCAAAACTTTGGAA------------TCATGT------A-AATAA-------AGGCTT--GTTTCCGG----TTAAATAGGCTTGTTTCCATTTATTAAAT-A-GGTATCACTGGg
gi|14 : CGTTTAATCAATC-ATCGCACTTATCAT-T-TTAGA-GAA-TTGTCCACGACCTTGGAC---TGATTAAAA-TACAAA-AGATTGTT--G--TTTCTGAAA----CT----GGAAATTAA--A----ACTTAATTTCGC-GCAATCTG--ATTT-TAGG-GACAAGTCGAAATGTCCAC---AAAA------ATC-AA---AAACTCGGAGCAGATTGGAAAAGCTTTGTAACACACAA
gi|15 : cGGCTA-ACCAACT-CGTTTTATCAAC-TATTTCACTGATCAAAT-TTAGACCAT-TT-TTCACGAATACGAAC---TGGTTAGCATTACAAA-TGGTTGCACCG--TTTCTGAAATCGTCC----AAAAGC-CA--A----AATCAATTCCCCAGCAACC-GT-TTTT-TCTGCGAAAAGTCGAA
gi|16 : caaggtcatgtataataaAGGCGGCAGTATC-GACGTTTGAATTACCCCCTTAACCGATAAAGAAA---AA-TCACCTCCCCCCCCCCTTT---AAAAAAATTACTA-AATAGGAAAAAAAAA
gi|16 : ccaAAAAA---AAAAGGGGGGAA--A-------AAGGGT----TATGGATTTA--GATATATAGACAAGGTTACCAACTTC-ACACTGAGCCggggggaaaaagggttatggatttagatatatagacaaggttaccaacttcacactgagcccatag
gi|17 : ccaaggcggcagtatcgacgtttgaattacccccttaaccgataaagaaaaatcacctcccccccccctttaaaaaaattactaaataggAT-TTAAA-AAT-TTATCCATGAACCTGGGC---TGGTTAATCCTACAAA-TGGTTGTA--G--TTTCAGCAA----CC----GAAAGC-AT--A----AG-CAATTCCCA-TTAACC-A--TTTT-TCCGTGATAAGTTGAAAGT--CATG--AAAA------ATC-CA---ACATTTATTGTAGGTCAGAAAcatag
gi|18 : t---GATTTATCAAGCATTCT-CCAAATTTGCTAGTA------TCTACGAGTTGAAAACAA--AACA-TAG--ATA-TAAATCGAACTTATTTAACAGCGTTACACGTTTCCAATC--GCTGTATTCGCTGTAT-TATC---A---TCGA-TTTT-TCCAAATTTT
gi|19 : aACTA-AAA-TGGTTGTA--G--TTTACAAAA----C----------C-AA--A----AAT-AGTTCGTT-TAAACC-GTATTTT-TCTGTGACAAGc
gi|2 : tccagcccagcaaaagtttccatgatgatatacaactggcCACAACCGACAGTATCCG-TGTTAAGACCACCCGATTTACCtggct
gi|2 : -TAGGGGT----TATAGGGTTATTGAT-TA-AGACAAGGTTATCAACACG-ACAATGGACCA-AGGTTATACTAACT---------------ATTTATCTAATCAAAT-TTAGA-GAT-TTATTCACAAACCTGGGC---TGGTTAGCACTACCAA-TGATAGTA--G--TTTTCGAAA----CC------------A--A----AATAAGTTTCCT-TTAAAC-G--TTTT--CCGTGATAAGTCGAAATG--CATGAAAAAA------ATC-TATTAATATTGATCGTCGGTCGGATAACCTTTAGAACAGTCGAATTGCCAATATAACTGC---GATTAATCAGTACGTAT-TCAA---TGGCACTA------ACTATGAGATGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTTCACAGCATTACCCGTTTCAAATC--TCTGTATTCGCTGAAT-TATCGAAG---TTG--TTTT-T--ACTTTTTCATTCAAAACCACGGAACCTATTCCTCACTCACAT------A-ACCAT-------AGGCTT--GTATCCGG----TG---TA----TG----CATTGACTCAA------------TGGGAA----CCAGATCT-GAAA-TCGCTGAGAA--TTCCGCCATTGAAGAAATTtgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaatttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|2 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattaTACCC-CCTCAAATC--GCTGTATTCGCTGGGC-TATC---A---TCG--TTTT-T-TATGCTTTTATTCAAAACATCGAAA------------Ttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|20 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaCAA--AACT-TAAAAGTT-TAA-TGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTAAATTCGCTGAAA-TATCG-Tttgttg
gi|23 : aaaacaaaatcgggcgTTCAATCAACTT-TTTCTCTGATCAAAT-TTAGA-TAT-TTATCCATCAACCTGGGC---TGG
gi|24 : cacccatttttCT-TAA---TG-CTAACAGAACTTATTTTACAACATTATTCACTTCAAATC--TATGCATTGGCTGAAC-T
gi|26 : CACAAGTGACAGTATCC-ATGTTTAGATTACCCTCCTTACC
gi|27 : cTCATTCAAC-TATTTCACT----AGAT---AGA-GAAACTATCCTCGAACATAGGC---TGGTTAACAtgagcccccaaagcaaaaaca
gi|28 : TTCTTCCAAATTTGCAAGTA------TCTAAGAGTTGAAAACAA--AGCT-T
gi|3 : AT-G-AA-ATCACTGGGAAGGAACCAGTCCC-GAAATTCGCCGAAAAC-TTCAGCCTTAAAAGAAAT
gi|3 : atATAT-TTTTTTTAACC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAA----------G---TT-TAAAAA------ATGGATTAA--GATATATAGACAAGGTTACCAACTTC-ACACTGGGGCACTGTTTA-ACCAATTGCATTCAATCAAC-TATTTCACCGATCAAAT-TAAGA-GAT-TCATCCACGAACCAGGAC---TGGATAACACTATAAA-TAGTTGCA--AGACTTCCAAAA----CC----GAAAAC-CA--A----AACCAATTCCCT-TTAACC-A--GTTT-TCCATGACGAGTCGAAATA--CATGATAAAA-------TA-CA---ATATTTATCGCAG-TCGGAAAAGATGAGGAACACAGAAAACACAAATATAACCGC---GATTTATCAATAATTCT-CATAATTTGCCGGTA------TCTACAGGTTGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTGTATTCGCTGAAA-TATC---G---TCG---TAT-TACTTGTTTTTATTCAAAACATCGACATT----------TCTTTT------------A-------AGGCTGAAGTTTTCGGCGAATT---TC----GG----GACTGGTTCgtcgatgttttgaataaaaacaagtaatacgacgatatttcagcgaatacagcgatttgaagcaggtaaacctgttcaataagttccatttacatttaagttttgttttcaacctgtagataccggcaaattatgagaattattgataaatcgcggttatatttgtgttttctgtgttcctcatcttttccgactgcgataaatattgtattttatcatgtatttcgactcgtcatggaaaactggttaaagggaattggttttggttttcggttttggaagtcttgcaactatttatagtgttatccagtcctggttcgtggatgaatctcttaatttgatcggtgaaatagttgattgaatgcaattggttaaacagtgccccagtgtgaagttggtaaccttgtctatatatcttaatccattttttaaactttttttttagttttatgtgttagggttagggtaaggttaaaaaaaatattattggg
gi|4 : atatgaaatcactgggaag------A-AACAA-------AGGCTT--TTTTCCGG----TG---TG----TA----TATTGACTCAATGG-GG-AACACTGGGAA----CCAG---------CTCGCC-AAAAC-TTCCGCCATTGAGAAAATtattggg
gi|4 : gacaacagaaccttcaaAAATGTTA-A-GAT-TTATCCACGAACTTG---------TTAGCACAACAAAATTGTTGCA--G--TTTCCGAAA----CC----GAAAAC-AA--ACAAAAAACAATTCCTA-TTAACC-G--TTTT--CTGTGACAAGTCTAAATG--CAT-AAAAAC------ATT-TA---ACATTTCTCGTGGGTTAGAAAGCAATTAAAACCTTCAGAATGCCATAATAATCAC---GATTTATCTATAATTCT-CCAAATTTGCCATTAACTACTTGTACAAATTGAAAACAA--AACA-CAA--ATG-GAAATGGAATTGATTAAACAGCATTACACGCTTCAATTTTAGCTGTATTCGCTGAGC-TATC---G---TCGGATTTT-T-CATGTTTTTATT-GAAACAT---AA------------ACATTT------gtttatgtttcaataaaaacatgaaaaatccgacgatagctcagcgaatacagctaaaattgaagcgtgtaatgctgtttaatcaattccatttccatttgtgttttgttttcaatttgtacaagtagttaatggcaaatttggagaattatagataaatcgtgattattatggcattctgaaggttttaattgctttctaacccacgagaaatgttaaatgtttttatgcatttagacttgtcacagaaaacggttaataggaattgttttttgtttgttttcggtttcggaaactgcaacaattttgttgtgctaacaagttcgtggataaatcttaacatttagctgggtgctaaaaggagtaatgca
gi|5 : gacaacagaaccttcaaaaacaaaggcttttttccggtgtgtatattgactcaatggggaacactgggaaccagctcgccaaaacttccgccattgagaAATTCGCCAATA------TCTAC---TTGAA------------------TG-TAAATGTAGCATATTTAACAGCATTATCCTCTTCAAATC--GTTGTATTAGCTGAAC-TATA---G---TCA--TTTTATATATATATTTATTCAAAATATC-GAA------------TTTTTTTCTTTGACAACAAAACATACAGACTT--ATATCCTG-----T---GA----T-----CACTGA--GAAC-G-GG-------GAGAA----CCAGTCCCTGAAATT-GCCAAACACTTTTCACCATCACGGAAATTagctgggtgctaaaaggagtaatgca
gi|5 : aaacgtctgtaaatcgtcggaaaacctttatTTACCTGCTTCAAATT--GCTGTATTCGCCACACATA----------------TT-TACATGTTTTTATTAAAAATATGGAAA------------Ttccatatttttaataaaaacatgtaaatatgtgtggcgaatacagcaatttgaagcaggtaatc
gi|6 : aaacgtctgtaaatcgtcggaaaacctttataattcgccaatatctacttgaatgtaaatgtagcatatttaacagcattatcctcttcaaatcgttgtattagctgaactatagtcattttatatatatatttattcaaaatatcgaatttttttctttgacaacaaaacatacagacttatatcctgtgatcactgagaacggggagaaccagtccctgaaattgccaaacacttttcaccatcacggaaACTATAAA-TGGTTGTA--G--TTTCCGAAA----CTTTCGGAAAAC-AA--A----AATCAATTTCCT-TTGACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA-------TA-CA---ATATTTATCGCAGGTCGGAAAAAATGTGAAACACAGAAAATGCCAATATAACCAC---AATTTATCAATAATTCT-CCAAGAGTGCCGGTA------TCCATACGTTGTAAACAA--AACT-TAC--GCG-TAAATGGCACTTATTCAACATGTTTACCTGTCTCAAATT--ACTGTATTTGAAGAAC-TAT-G-T----TCG--TTTT-T-CACGTTTTTATTCAAAtc
gi|7 : CACAGGCGGCAATATC-GGTGTTTGGATTACCCCCTTTACCGATTAAGAAAATGAA---ACCT-----------TTAAAAAAAAAATGGCCAGAA-AGCAAATAAAAATTAAAAAAAATTAA----CCC--------------CC----CCCCAA----AAAAAAAAAAA--AAAGA---ATAACAAACAAAATG---TT-T---GTT----TTTGGATTTA--GATATATAAACAAGGTAACCAACACC-ACACTTGACCA-TGGTTACACTAACTGCATTCATTCAA-CTATTTCACTGATCAAAT-ATAAA-GAT-TTATCCACGAACCAGAGC---TGGTTAACA
gi|8 : -AA--A----AA-CAATTCCCA-TTAATC-AAATTTTATC---GACAAATCGAACTG--TCTGGAATAC------AGT-CA---ACGTTCAGAATAAGTAAGAAAGCCTGT---------AAAATGCAAACA---CTGT---GGTTTATCAAGTATTCT-CAAAAATTGCCAATA------TCTGGAAGTTG-AAATAATGAATT-AAA--GCACCAAATGGAATGTATTAAACAGTATAACCTGCTTCAAACC--ATAATTCTTGATGAAA-TAC---TG---CCG---ATT-TACACGTTATTATTGAAAACAT
gi|9 : aATTTCACTGATCAAAT-TTAGA-GAA-TTATCCACGAGTCTGGGCTGGTGGTTACCACTTCAGA-TTGTTGTA--G--TTT---------------------C-AA--A----AAACAATTCACT-TCGACC-A--TTTT-T--ATAACAGG-CGAAATG--CATAAAAAAATTCAACATT-CA---ACATTTATCGTAGGTTGG-AAGCCCTTGGGACACTCAAAATGCCAATTTAACCTT---GATTTATTAATGATTCT-CCAAATTTGCCAGTT------TCTCAAAGTTGATAACAA--AACT-
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTATAGATTCAACAGGTAAATTGGCATTAACAACGCATACAATAATTATAATAAAGACAAGAGAAATAT
Unaligned ( gi|22 ): TTCTTGGCATAGGTGAGAGTATCAGTGTTTAGAGGGCCCAATTTACCTGATGTTCGTCCCCCACACCC
Unaligned ( gi|25 ): TTTCCTAATAAATTGATAATTCAACAATTTATTAAATGACCAAGAAACCAGATCAAATATGA
Unaligned ( gi|29 ): AAAAAAACACTTAAGAAACCGTGGAATACAGATTAGGGTA
Unaligned ( gi|30 ): ATTAAGATGATAATAAACCAGAACTGTAGCGGGTG
Alignments
lowQualScore : 222 2222222 6666666666 1 1 333333 2222 333333333333333333 111 33333333333333333 111111 1 1 1 111 111111111111 11 11111111 111 44444444 111 1 333333333333 22222222222222222222 4444444444444444444444 222222222 1111
lowQualScore : 333 7777777 0000000000 7 7 3 3 000000 3333 333333333333333333 6 6 444 55555555555555555 444444 99 1 3 6 0 3 0 2 0 555 0 3 3 3 555 3 44 44 333333333333 3 44 6666 99 3 3 11 8888 55 0 99999999 44 666 1 0 2 777 3 0 0 999999 55 1 44 2 000 3 1 22 44 3 33333333 000 3 1 3 222222222222 1 77777777777777777777 99 1111111111111111111111 4 222222222 7777 88888 3 3 8 4
lowQualScore : ... ....... .......... . . . . ...... .... .................. . . ... ................. ...... .. . . . . . . . . ... . . . . ... . .. .. ............ . .. .... .. . . .. .... .. . ........ .. ... . . . ... . . . ...... .. . .. . ... . . .. .. . ........ ... . . . ............ . .................... .. ...................... . ......... .... ..... . . . .
lowQualScore : 666 0000000 0000000000 3 3 3 3 555555 5555 000000000000000000 7 7 000 77777777777777777 333333 22 0 7 7 0 2 0 2 5 444 1 6 6 3 444 3 66 66 444444444444 1 22 5555 55 1 1 55 2222 00 5 00000000 66 444 6 6 4 000 6 3 7 666666 22 2 22 9 333 3 5 00 22 1 66666666 777 6 0 4 555555555555 0 88888888888888888888 22 8888888888888888888888 2 888888888 0000 66666 8 2 0 6
consensus : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATCAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
Reference ( family-1587 ) : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATCAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
gi|1 : CACAGGTGGCAGTATACG-TGTTTGGATGACCCCCTTTACCGATAAAGAAAA-AAAATCACCG---------CTTTAAAAAAA---TTGCCA-AA-AGCAAAAAAAAA------AAAATTAAACACCCCACATATTTTTTTG-CCCTTATCCTAACCCTAACACATAAAGCTAAAAA---AAAATAAAGGAA--A---CT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTAACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCATTCAATCAACCTTTTTAACCGATCAAAT-TTAGA-GAT-TTATCCACGAACCAGGGC---TGGTTAACACTATAAA-TGGTTGTA--G--TTTCCGAAA----CC----GTAAAC-AA--A----AATTAATTTCCT-TTGACC-G--TTTT-TCCGTGACATGTCGAAATG--CATGAAAAAA------ATG-CA---ATATTTATTGCAGGTTGGAAAAAATGTGGAACACAGAAAATGCAAATATAA-----------------TAATTCT-CCAAGAGTGCCGGTA------TCCACACGTTGCAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACATGTTTACCGGTCTAAAATC--GCTGTATTCGAAGAAT-TACTG-TATGTTCG--TTTT-TACACGTCTTTATTCAAAACGTTGGAA------------TCATGT------A-AATAA-------AGGCTT--ATTTCCGG----TT---TA----TG----GACTCATTCAAT-GTGT-ATCACTGGGAA----CCAGTTCC-GAAATTCGCCGAAAAC-TTTTGCCGGTAAAGAAATT
gi|10 : AT-TTATTCACGAACATGGGC---TGGTAAGCACATCAAA-TGGTTATA--G--TTTCTGCAA----TT----AAAAA------A----AA-CAATTCCCT-TTAACT-G--T----------------CGAAATG--CATGAAAAA--------TC-TA---ACATTTATCAAAGGTCGGAAAATCTTTGGAAAAGTCAAAATGCCAATATTACGGC---GATTTATCAATAATTTT-CCAAATATGTCAGTA------TCTACAAGTTGAAAACAA--AAATGTAA---TG-TAAATGGAACTTAgaaggggtcaacgtt
gi|11 : tTAAGAATATAAAATGAGGGTA--GGTGTTATAAGGTTAATATATAGATTTA--GATATATAGACAAGGTCACC----TCGACACTGG
gi|12 : gactatatcggtgtttagaccacccaattaacatggttttcaaaagcaaaataacacaagccctgaccccacccactcaacccatttgtttttaaataaataaaatatatctatatattttatgattataC---TGGTTAACACTACGCA-TGGTTGTA--G--TTTCCGAAA----C-----GAAAAA-AACAA----AAT-AAT-CCAT-TAAACT-G--TTTA--CCGTGGAAAGTCTAAATG--CATGAACCA--------TGGCA---ATATTTATCGTAGGTCTGAAAACCTTTGGACCACACAAAATGCCAATATGATCGCTATAATTTATCAATAATTTT-TCGAa
gi|13 : atacttaaaaaaacacaaaatcaTGCCGGTA------TCCACATGTTGCAAGCAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGATTTACCTGTCTCAAATC--GCTGTATTCAAAGAAC-TAT-G-T----TCG--TTTT-CATACGTTTTAATTCAAAACTTTGGAA------------TCATGT------A-AATAA-------AGGCTT--GTTTCCGG----TTAAATAGGCTTGTTTCCATTTATTAAAT-A-GGTATCACTGGg
gi|14 : CGTTTAATCAATC-ATCGCACTTATCAT-T-TTAGA-GAA-TTGTCCACGACCTTGGAC---TGATTAAAA-TACAAA-AGATTGTT--G--TTTCTGAAA----CT----GGAAATTAA--A----ACTTAATTTCGC-GCAATCTG--ATTT-TAGG-GACAAGTCGAAATGTCCAC---AAAA------ATC-AA---AAACTCGGAGCAGATTGGAAAAGCTTTGTAACACACAA
gi|15 : cGGCTA-ACCAACT-CGTTTTATCAAC-TATTTCACTGATCAAAT-TTAGACCAT-TT-TTCACGAATACGAAC---TGGTTAGCATTACAAA-TGGTTGCACCG--TTTCTGAAATCGTCC----AAAAGC-CA--A----AATCAATTCCCCAGCAACC-GT-TTTT-TCTGCGAAAAGTCGAA
gi|16 : caaggtcatgtataataaAGGCGGCAGTATC-GACGTTTGAATTACCCCCTTAACCGATAAAGAAA---AA-TCACCTCCCCCCCCCCTTT---AAAAAAATTACTA-AATAGGAAAAAAAAA
gi|16 : ccaAAAAA---AAAAGGGGGGAA--A-------AAGGGT----TATGGATTTA--GATATATAGACAAGGTTACCAACTTC-ACACTGAGCCggggggaaaaagggttatggatttagatatatagacaaggttaccaacttcacactgagcccatag
gi|17 : ccaaggcggcagtatcgacgtttgaattacccccttaaccgataaagaaaaatcacctcccccccccctttaaaaaaattactaaataggAT-TTAAA-AAT-TTATCCATGAACCTGGGC---TGGTTAATCCTACAAA-TGGTTGTA--G--TTTCAGCAA----CC----GAAAGC-AT--A----AG-CAATTCCCA-TTAACC-A--TTTT-TCCGTGATAAGTTGAAAGT--CATG--AAAA------ATC-CA---ACATTTATTGTAGGTCAGAAAcatag
gi|18 : t---GATTTATCAAGCATTCT-CCAAATTTGCTAGTA------TCTACGAGTTGAAAACAA--AACA-TAG--ATA-TAAATCGAACTTATTTAACAGCGTTACACGTTTCCAATC--GCTGTATTCGCTGTAT-TATC---A---TCGA-TTTT-TCCAAATTTT
gi|19 : aACTA-AAA-TGGTTGTA--G--TTTACAAAA----C----------C-AA--A----AAT-AGTTCGTT-TAAACC-GTATTTT-TCTGTGACAAGc
gi|2 : tccagcccagcaaaagtttccatgatgatatacaactggcCACAACCGACAGTATCCG-TGTTAAGACCACCCGATTTACCtggct
gi|2 : -TAGGGGT----TATAGGGTTATTGAT-TA-AGACAAGGTTATCAACACG-ACAATGGACCA-AGGTTATACTAACT---------------ATTTATCTAATCAAAT-TTAGA-GAT-TTATTCACAAACCTGGGC---TGGTTAGCACTACCAA-TGATAGTA--G--TTTTCGAAA----CC------------A--A----AATAAGTTTCCT-TTAAAC-G--TTTT--CCGTGATAAGTCGAAATG--CATGAAAAAA------ATC-TATTAATATTGATCGTCGGTCGGATAACCTTTAGAACAGTCGAATTGCCAATATAACTGC---GATTAATCAGTACGTAT-TCAA---TGGCACTA------ACTATGAGATGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTTCACAGCATTACCCGTTTCAAATC--TCTGTATTCGCTGAAT-TATCGAAG---TTG--TTTT-T--ACTTTTTCATTCAAAACCACGGAACCTATTCCTCACTCACAT------A-ACCAT-------AGGCTT--GTATCCGG----TG---TA----TG----CATTGACTCAA------------TGGGAA----CCAGATCT-GAAA-TCGCTGAGAA--TTCCGCCATTGAAGAAATTtgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaatttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|2 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattaTACCC-CCTCAAATC--GCTGTATTCGCTGGGC-TATC---A---TCG--TTTT-T-TATGCTTTTATTCAAAACATCGAAA------------Ttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|20 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaCAA--AACT-TAAAAGTT-TAA-TGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTAAATTCGCTGAAA-TATCG-Tttgttg
gi|23 : aaaacaaaatcgggcgTTCAATCAACTT-TTTCTCTGATCAAAT-TTAGA-TAT-TTATCCATCAACCTGGGC---TGG
gi|24 : cacccatttttCT-TAA---TG-CTAACAGAACTTATTTTACAACATTATTCACTTCAAATC--TATGCATTGGCTGAAC-T
gi|26 : CACAAGTGACAGTATCC-ATGTTTAGATTACCCTCCTTACC
gi|27 : cTCATTCAAC-TATTTCACT----AGAT---AGA-GAAACTATCCTCGAACATAGGC---TGGTTAACAtgagcccccaaagcaaaaaca
gi|28 : TTCTTCCAAATTTGCAAGTA------TCTAAGAGTTGAAAACAA--AGCT-T
gi|3 : AT-G-AA-ATCACTGGGAAGGAACCAGTCCC-GAAATTCGCCGAAAAC-TTCAGCCTTAAAAGAAAT
gi|3 : atATAT-TTTTTTTAACC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAA----------G---TT-TAAAAA------ATGGATTAA--GATATATAGACAAGGTTACCAACTTC-ACACTGGGGCACTGTTTA-ACCAATTGCATTCAATCAAC-TATTTCACCGATCAAAT-TAAGA-GAT-TCATCCACGAACCAGGAC---TGGATAACACTATAAA-TAGTTGCA--AGACTTCCAAAA----CC----GAAAAC-CA--A----AACCAATTCCCT-TTAACC-A--GTTT-TCCATGACGAGTCGAAATA--CATGATAAAA-------TA-CA---ATATTTATCGCAG-TCGGAAAAGATGAGGAACACAGAAAACACAAATATAACCGC---GATTTATCAATAATTCT-CATAATTTGCCGGTA------TCTACAGGTTGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTGTATTCGCTGAAA-TATC---G---TCG---TAT-TACTTGTTTTTATTCAAAACATCGACATT----------TCTTTT------------A-------AGGCTGAAGTTTTCGGCGAATT---TC----GG----GACTGGTTCgtcgatgttttgaataaaaacaagtaatacgacgatatttcagcgaatacagcgatttgaagcaggtaaacctgttcaataagttccatttacatttaagttttgttttcaacctgtagataccggcaaattatgagaattattgataaatcgcggttatatttgtgttttctgtgttcctcatcttttccgactgcgataaatattgtattttatcatgtatttcgactcgtcatggaaaactggttaaagggaattggttttggttttcggttttggaagtcttgcaactatttatagtgttatccagtcctggttcgtggatgaatctcttaatttgatcggtgaaatagttgattgaatgcaattggttaaacagtgccccagtgtgaagttggtaaccttgtctatatatcttaatccattttttaaactttttttttagttttatgtgttagggttagggtaaggttaaaaaaaatattattggg
gi|4 : atatgaaatcactgggaag------A-AACAA-------AGGCTT--TTTTCCGG----TG---TG----TA----TATTGACTCAATGG-GG-AACACTGGGAA----CCAG---------CTCGCC-AAAAC-TTCCGCCATTGAGAAAATtattggg
gi|4 : gacaacagaaccttcaaAAATGTTA-A-GAT-TTATCCACGAACTTG---------TTAGCACAACAAAATTGTTGCA--G--TTTCCGAAA----CC----GAAAAC-AA--ACAAAAAACAATTCCTA-TTAACC-G--TTTT--CTGTGACAAGTCTAAATG--CAT-AAAAAC------ATT-TA---ACATTTCTCGTGGGTTAGAAAGCAATTAAAACCTTCAGAATGCCATAATAATCAC---GATTTATCTATAATTCT-CCAAATTTGCCATTAACTACTTGTACAAATTGAAAACAA--AACA-CAA--ATG-GAAATGGAATTGATTAAACAGCATTACACGCTTCAATTTTAGCTGTATTCGCTGAGC-TATC---G---TCGGATTTT-T-CATGTTTTTATT-GAAACAT---AA------------ACATTT------gtttatgtttcaataaaaacatgaaaaatccgacgatagctcagcgaatacagctaaaattgaagcgtgtaatgctgtttaatcaattccatttccatttgtgttttgttttcaatttgtacaagtagttaatggcaaatttggagaattatagataaatcgtgattattatggcattctgaaggttttaattgctttctaacccacgagaaatgttaaatgtttttatgcatttagacttgtcacagaaaacggttaataggaattgttttttgtttgttttcggtttcggaaactgcaacaattttgttgtgctaacaagttcgtggataaatcttaacatttagctgggtgctaaaaggagtaatgca
gi|5 : gacaacagaaccttcaaaaacaaaggcttttttccggtgtgtatattgactcaatggggaacactgggaaccagctcgccaaaacttccgccattgagaAATTCGCCAATA------TCTAC---TTGAA------------------TG-TAAATGTAGCATATTTAACAGCATTATCCTCTTCAAATC--GTTGTATTAGCTGAAC-TATA---G---TCA--TTTTATATATATATTTATTCAAAATATC-GAA------------TTTTTTTCTTTGACAACAAAACATACAGACTT--ATATCCTG-----T---GA----T-----CACTGA--GAAC-G-GG-------GAGAA----CCAGTCCCTGAAATT-GCCAAACACTTTTCACCATCACGGAAATTagctgggtgctaaaaggagtaatgca
gi|5 : aaacgtctgtaaatcgtcggaaaacctttatTTACCTGCTTCAAATT--GCTGTATTCGCCACACATA----------------TT-TACATGTTTTTATTAAAAATATGGAAA------------Ttccatatttttaataaaaacatgtaaatatgtgtggcgaatacagcaatttgaagcaggtaatc
gi|6 : aaacgtctgtaaatcgtcggaaaacctttataattcgccaatatctacttgaatgtaaatgtagcatatttaacagcattatcctcttcaaatcgttgtattagctgaactatagtcattttatatatatatttattcaaaatatcgaatttttttctttgacaacaaaacatacagacttatatcctgtgatcactgagaacggggagaaccagtccctgaaattgccaaacacttttcaccatcacggaaACTATAAA-TGGTTGTA--G--TTTCCGAAA----CTTTCGGAAAAC-AA--A----AATCAATTTCCT-TTGACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA-------TA-CA---ATATTTATCGCAGGTCGGAAAAAATGTGAAACACAGAAAATGCCAATATAACCAC---AATTTATCAATAATTCT-CCAAGAGTGCCGGTA------TCCATACGTTGTAAACAA--AACT-TAC--GCG-TAAATGGCACTTATTCAACATGTTTACCTGTCTCAAATT--ACTGTATTTGAAGAAC-TAT-G-T----TCG--TTTT-T-CACGTTTTTATTCAAAtc
gi|7 : CACAGGCGGCAATATC-GGTGTTTGGATTACCCCCTTTACCGATTAAGAAAATGAA---ACCT-----------TTAAAAAAAAAATGGCCAGAA-AGCAAATAAAAATTAAAAAAAATTAA----CCC--------------CC----CCCCAA----AAAAAAAAAAA--AAAGA---ATAACAAACAAAATG---TT-T---GTT----TTTGGATTTA--GATATATAAACAAGGTAACCAACACC-ACACTTGACCA-TGGTTACACTAACTGCATTCATTCAA-CTATTTCACTGATCAAAT-ATAAA-GAT-TTATCCACGAACCAGAGC---TGGTTAACA
gi|8 : -AA--A----AA-CAATTCCCA-TTAATC-AAATTTTATC---GACAAATCGAACTG--TCTGGAATAC------AGT-CA---ACGTTCAGAATAAGTAAGAAAGCCTGT---------AAAATGCAAACA---CTGT---GGTTTATCAAGTATTCT-CAAAAATTGCCAATA------TCTGGAAGTTG-AAATAATGAATT-AAA--GCACCAAATGGAATGTATTAAACAGTATAACCTGCTTCAAACC--ATAATTCTTGATGAAA-TAC---TG---CCG---ATT-TACACGTTATTATTGAAAACAT
gi|9 : aATTTCACTGATCAAAT-TTAGA-GAA-TTATCCACGAGTCTGGGCTGGTGGTTACCACTTCAGA-TTGTTGTA--G--TTT---------------------C-AA--A----AAACAATTCACT-TCGACC-A--TTTT-T--ATAACAGG-CGAAATG--CATAAAAAAATTCAACATT-CA---ACATTTATCGTAGGTTGG-AAGCCCTTGGGACACTCAAAATGCCAATTTAACCTT---GATTTATTAATGATTCT-CCAAATTTGCCAGTT------TCTCAAAGTTGATAACAA--AACT-
blockSeqs : GA ATGAA CCCCCCCCCC A A G T TTAAAA . ATATTTTTTTTAACCT C C TAT TGAGGGTAGGTGTTA TTAATA TT C T G C T G G CTT G C A TGG A CC GA TCGTCCAA T CA CAAA TT A T TA TAG TC ATTCAACA GG TTA T T TAT T ACTACT AA A TG G AAG C T AT TA A CGAAG GAT A A T CCTATTCCTCAC G TCTTTGACAACAAAACATAC AA TTAAATAGGCTTGTTTCC T TAGGTAT GGAA TCCCT T G T T
blockSeqs : CG AAT . . A . . CC . . . CAAACAAAATGTT GT . T A . . C G G TC . . . . . . . CTTTCGGA . . . TC . . AA TCT . AA C . C A . . . AT C . . G . T CG . . GT AT . C C TT A AAATAA . CGAATTTCGGG C TGGGGAA . ATCT C G . A
blockSeqs : CA . GGGGGGAAA GT . T T . . . . A CT . . . . . . . TTAA . . . TA . . T TCC . AA C . G A . . . GA A . . A . T CA . . CA T . A C . T AACCAT . TGTATGC T TGAAAT . TCCC T A . T
blockSeqs : GG . GTT TT . T A . . . A CT . . . . . . . CTGG . . . CC . . . TCT . AA C . C T . . . GA A . . A . G GT . . CA T . A C . T AAACAA . TGTGTAT C CGGG . . . . . C
blockSeqs : A . A . . . CT . . . . . . . CCGA . . . AC . . . TCC . CA C . G A . . . GA A . . A . T CA . . CG T . A C . T A . TGATC . .
blockSeqs : CT . . . . . . . CCGA . . . TC . . . TCC . CA A . C T . . . AG A . . A . G GT . . CG T . A G .
blockSeqs : . . . . . . . . CCGA . . . AC . . . ATC . A T . A A . . . AA A . . G . A CA . . AG T . . . .
blockSeqs : . . . . . . . CGA . . . C . . . CC . A A . C T . . . AC A . . G . T CA . . GT . . .
blockSeqs : . . . . . . . CC . . . T . . . CC . . T . C . . . . AA T . . . . C GT . . TG . . .
blockSeqs : . . . . . . . C . . . C . . . CT . . T . . . AA A . . . . A TA . . . . . .
blockSeqs : . . . . . . . . . T . . . T . . . . . . . . .
blockSeqs : . . . . C . . . . . . . .
blockSeqs : .
blockSeqCons : GGGGGAGGGTT****** CT* CG******
originalCons : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAACGAGGGAA--G---TT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACCTATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATCAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG-TG---TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
finalCons : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAA---AAAAGGGGGAGGGTT------TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAACT-ATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--G--TTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATCAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATCG------TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTATAGATTCAACAGGTAAATTGGCATTAACAACGCATACAATAATTATAATAAAGACAAGAGAAATAT
Unaligned ( gi|22 ): TTCTTGGCATAGGTGAGAGTATCAGTGTTTAGAGGGCCCAATTTACCTGATGTTCGTCCCCCACACCC
Unaligned ( gi|25 ): TTTCCTAATAAATTGATAATTCAACAATTTATTAAATGACCAAGAAACCAGATCAAATATGA
Unaligned ( gi|29 ): AAAAAAACACTTAAGAAACCGTGGAATACAGATTAGGGTA
Unaligned ( gi|30 ): ATTAAGATGATAATAAACCAGAACTGTAGCGGGTG
Alignments
lowQualScore : 222 2222222 6666666666 1 1 333333 2222 44444444444444444 7777777777777777777 111111 1 1 1 111111111111 11 1111111 111 1111111111 111 1 333333333333 22222222222222222222 4444444444444444444444 222222222 1111
lowQualScore : 333 7777777 0000000000 7 7 3 3 000000 3333 22222222222222222 7 6 0 8 1111111111111111111 444444 99 1 3 6 0 3 0 2 0 5 0 3 3 3 555 3 99 333333333333 3 44 6666 99 3 3 11 8888 55 44 4444444 44 666 1 0 2 777 3 0 0 999999 55 1 44 2 000 3 1 22 44 3 4444444444 000 3 1 3 222222222222 1 77777777777777777777 99 1111111111111111111111 4 222222222 7777 88888 3 3 8 4
lowQualScore : ... ....... .......... . . . . ...... .... ................. . . . . ................... ...... .. . . . . . . . . . . . . . ... . .. ............ . .. .... .. . . .. .... .. .. ....... .. ... . . . ... . . . ...... .. . .. . ... . . .. .. . .......... ... . . . ............ . .................... .. ...................... . ......... .... ..... . . . .
lowQualScore : 666 0000000 0000000000 3 3 3 3 555555 5555 33333333333333333 3 7 2 8 9999999999999999999 333333 22 0 7 7 0 2 0 2 5 0 1 6 6 3 444 3 22 444444444444 1 22 5555 55 1 1 55 2222 00 00 7777777 66 444 6 6 4 000 6 3 7 666666 22 2 22 9 333 3 5 00 22 1 1111111111 000 6 0 4 555555555555 0 88888888888888888888 22 8888888888888888888888 2 888888888 0000 66666 8 2 0 6
consensus : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAAAAAAGGG--------AGGANGTT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAAC-TATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--GTTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATCAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATC---G-----TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
Reference ( family-1587 ) : CACAGGCGGCAGTATCCGATGTTTGGATTACCCCCTTTACCGATAAAGAAAA-GAA-TCACCT---------CTTTAAAAAAAAAATTGCCA-AA-AGCAAAAAAAAATTAAAAAAAATTAAACACCCCACAT-TTTTTTTG-CC-TTACCCTAACCCTAACACATAAAACTAAAAAAAAAGGG--------GGAGGGTT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTNACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCGTTCAATCAAC-TATTTCACTGATCAAAT-TTAGA-GAT-TTATCCACGAACCTGGGC---TGGTTAACACTACAAA-TGGTTGTA--GTTTCCGAAA----CC----GAAAAC-AA--A----AATCAATTCCCT-TTAACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA------ATN-CA---ACATTTATCGTAGGTCGGAAAACCTTTGGAACACNCAAAATGCCAATATAACCGC---GATTTATCAATAATTCT-CCAAATTTGCCGGTA------TCTACGAGTTGAAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGNNTTACCCGCTTCAAATC--GCTGTATTCGCTGAAC-TATC---G-----TCG--TTTT-TACACGTTTTTATTCAAAACATCGGAA------------TCATNT------A-AACAA-------AGGCTT--GTTTCCGG----TT---TA----TG----CACTGATTCAAT-G-GG-ATCACTGGGAA----CCAGTCCC-GAAATTCGCCGAAAAC-TTCCGCCATCGAAGAAATT
gi|1 : CACAGGTGGCAGTATACG-TGTTTGGATGACCCCCTTTACCGATAAAGAAAA-AAAATCACCG---------CTTTAAAAAAA---TTGCCA-AA-AGCAAAAAAAAA------AAAATTAAACACCCCACATATTTTTTTG-CCCTTATCCTAACCCTAACACATAAAGCTAAAAAAAAATAA--------AGGAAACT-TAAGGGT----TATGGATTTA--GATATATAGACAAGGTAACCAACTTC-ACACTGGGCCA-TGGTTACACCAACTGCATTCAATCAACCTTTTTAACCGATCAAAT-TTAGA-GAT-TTATCCACGAACCAGGGC---TGGTTAACACTATAAA-TGGTTGTA--GTTTCCGAAA----CC----GTAAAC-AA--A----AATTAATTTCCT-TTGACC-G--TTTT-TCCGTGACATGTCGAAATG--CATGAAAAAA------ATG-CA---ATATTTATTGCAGGTTGGAAAAAATGTGGAACACAGAAAATGCAAATATAA-----------------TAATTCT-CCAAGAGTGCCGGTA------TCCACACGTTGCAAACAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACATGTTTACCGGTCTAAAATC--GCTGTATTCGAAGAAT-TACT---GTATGTTCG--TTTT-TACACGTCTTTATTCAAAACGTTGGAA------------TCATGT------A-AATAA-------AGGCTT--ATTTCCGG----TT---TA----TG----GACTCATTCAAT-GTGT-ATCACTGGGAA----CCAGTTCC-GAAATTCGCCGAAAAC-TTTTGCCGGTAAAGAAATT
gi|10 : AT-TTATTCACGAACATGGGC---TGGTAAGCACATCAAA-TGGTTATA--GTTTCTGCAA----TT----AAAAA------A----AA-CAATTCCCT-TTAACT-G--T----------------CGAAATG--CATGAAAAA--------TC-TA---ACATTTATCAAAGGTCGGAAAATCTTTGGAAAAGTCAAAATGCCAATATTACGGC---GATTTATCAATAATTTT-CCAAATATGTCAGTA------TCTACAAGTTGAAAACAA--AAATGTAA---TG-TAAATGGAACTTAgaaggggtcaacgtt
gi|11 : tATATAAGAATATAAAATGAGGG--------TAGGTGTTATAAGGTTAATATATAGATTTA--GATATATAGACAAGGTCACC----TCGACACTGG
gi|12 : gactatatcggtgtttagaccacccaattaacatggttttcaaaagcaaaataacacaagccctgaccccacccactcaacccatttgtttttaaataaataaaatatatctatatattttatgattC---TGGTTAACACTACGCA-TGGTTGTA--GTTTCCGAAA----C-----GAAAAA-AACAA----AAT-AAT-CCAT-TAAACT-G--TTTA--CCGTGGAAAGTCTAAATG--CATGAACCA--------TGGCA---ATATTTATCGTAGGTCTGAAAACCTTTGGACCACACAAAATGCCAATATGATCGCTATAATTTATCAATAATTTT-TCGAa
gi|13 : atacttaaaaaaacacaaaatcaTGCCGGTA------TCCACATGTTGCAAGCAA--AACT-TAA--GTG-TAAATGGAACTTATTTAACAGATTTACCTGTCTCAAATC--GCTGTATTCAAAGAAC-TATG---T-----TCG--TTTT-CATACGTTTTAATTCAAAACTTTGGAA------------TCATGT------A-AATAA-------AGGCTT--GTTTCCGG----TTAAATAGGCTTGTTTCCATTTATTAAAT-A-GGTATCACTGGg
gi|14 : CGTTTAATCAAT-CATCGCACTTATCAT-T-TTAGA-GAA-TTGTCCACGACCTTGGAC---TGATTAAAA-TACAAA-AGATTGTT--GTTTCTGAAA----CT----GGAAATTAA--A----ACTTAATTTCGC-GCAATCTG--ATTT-TAGG-GACAAGTCGAAATGTCCAC---AAAA------ATC-AA---AAACTCGGAGCAGATTGGAAAAGCTTTGTAACACACAA
gi|15 : cGGCTA-ACCAACT-CGTTTTATCAAC-TATTTCACTGATCAAAT-TTAGACCAT-TT-TTCACGAATACGAAC---TGGTTAGCATTACAAA-TGGTTGCACCGTTTCTGAAATCGTCC----AAAAGC-CA--A----AATCAATTCCCCAGCAACC-GT-TTTT-TCTGCGAAAAGTCGAA
gi|16 : caaggtcatgtataataaAGGCGGCAGTATC-GACGTTTGAATTACCCCCTTAACCGATAAAGAAA---AA-TCACCTCCCCCCCCCCTTT---AAAAAAATTACTA-AATAGGAAAAAAAAA
gi|16 : ccaAAAAAAAAGGGG--------GGAAA-----AAGGGT----TATGGATTTA--GATATATAGACAAGGTTACCAACTTC-ACACTGAGCCggggggaaaaagggttatggatttagatatatagacaaggttaccaacttcacactgagcccatag
gi|17 : ccaaggcggcagtatcgacgtttgaattacccccttaaccgataaagaaaaatcacctcccccccccctttaaaaaaattactaaataggaAT-TTAAA-AAT-TTATCCATGAACCTGGGC---TGGTTAATCCTACAAA-TGGTTGTA--GTTTCAGCAA----CC----GAAAGC-AT--A----AG-CAATTCCCA-TTAACC-A--TTTT-TCCGTGATAAGTTGAAAGT--CATG--AAAA------ATC-CA---ACATTTATTGTAGGTCAGAAAcatag
gi|18 : t---GATTTATCAAGCATTCT-CCAAATTTGCTAGTA------TCTACGAGTTGAAAACAA--AACA-TAG--ATA-TAAATCGAACTTATTTAACAGCGTTACACGTTTCCAATC--GCTGTATTCGCTGTAT-TATC---A-----TCGA-TTTT-TCCAAATTTT
gi|19 : aACTA-AAA-TGGTTGTA--GTTTACAAAA----C----------C-AA--A----AAT-AGTTCGTT-TAAACC-GTATTTT-TCTGTGACAAGc
gi|2 : tccagcccagcaaaagtttccatgatgatatacaactggcCACAACCGACAGTATCCG-TGTTAAGACCACCCGATTTACCtggct
gi|2 : -TAGGGGT----TATAGGGTTATTGAT-TA-AGACAAGGTTATCAACACG-ACAATGGACCA-AGGTTATACTAACT---------------ATTTATCTAATCAAAT-TTAGA-GAT-TTATTCACAAACCTGGGC---TGGTTAGCACTACCAA-TGATAGTA--GTTTTCGAAA----CC------------A--A----AATAAGTTTCCT-TTAAAC-G--TTTT--CCGTGATAAGTCGAAATG--CATGAAAAAA------ATC-TATTAATATTGATCGTCGGTCGGATAACCTTTAGAACAGTCGAATTGCCAATATAACTGC---GATTAATCAGTACGTAT-TCAA---TGGCACTA------ACTATGAGATGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTTCACAGCATTACCCGTTTCAAATC--TCTGTATTCGCTGAAT-TATCGAAG-----TTG--TTTT-T--ACTTTTTCATTCAAAACCACGGAACCTATTCCTCACTCACAT------A-ACCAT-------AGGCTT--GTATCCGG----TG---TA----TG----CATTGACTCAA------------TGGGAA----CCAGATCT-GAAA-TCGCTGAGAA--TTCCGCCATTGAAGAAATTtgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaatttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|2 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattaTACCC-CCTCAAATC--GCTGTATTCGCTGGGC-TATC---A-----TCG--TTTT-T-TATGCTTTTATTCAAAACATCGAAA------------Ttcgatgttttgaataaaagcataaaaaacgatgatagcccagcgaatacagcgatttgagggggtattgttg
gi|20 : cacaaccgacagtatccgtgttaagaccacccgatttacctgacttccaaaagcaccccacactccacccattttttatatgattataggggttatagggttattgattaagacaaggttatcaacacgacaatggaccaaggttatactaactatttatctaatcaaatttagagatttattcacaaacctgggctggttagcactaccaatgatagtagttttcgaaaccaaaataagtttcctttaaacgttttccgtgataagtcgaaatgcatgaaaaaaatctattaatattgatcgtcggtcggataacctttagaacagtcgaattgccaatataactgcgattaatcagtacgtattcaatggcactaactatgagatgaaaacaaaacttaaatgtaaatggaacttatttcacagcattacccgtttcaaatctctgtattcgctgaattatcgaagttgtttttactttttcattcaaaaccacggaacctattcctcactcacataaccataggcttgtatccggtgtatgcattgactcaatgggaaccagatctgaaatcgctgagaattccgccattgaagaaCAA--AACT-TAAAAGTT-TAA-TGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTAAATTCGCTGAAA-TATC---G-----TCG--ttgttg
gi|23 : aaaacaaaatcgggTTCAATCAAC-TTTTTCTCTGATCAAAT-TTAGA-TAT-TTATCCATCAACCTGGGC---TGG
gi|24 : cacccatttttCT-TAA---TG-CTAACAGAACTTATTTTACAACATTATTCACTTCAAATC--TATGCATTGGCTGAAC-T
gi|26 : CACAAGTGACAGTATCC-ATGTTTAGATTACCCTCCTTACC
gi|27 : cTCATTCAAC-TATTTCACT----AGAT---AGA-GAAACTATCCTCGAACATAGGC---TGGTTAACAtgagcccccaaagcaaaaaca
gi|28 : TTCTTCCAAATTTGCAAGTA------TCTAAGAGTTGAAAACAA--AGCT-T
gi|3 : AT-G-AA-ATCACTGGGAAGGAACCAGTCCC-GAAATTCGCCGAAAAC-TTCAGCCTTAAAAGAAAT
gi|3 : atATAT-TTTTTTTAACC-TTACCCTAACCCTAACACATAAAACTAAAAAAAAAG----------------TT-TAAAAA------ATGGATTAA--GATATATAGACAAGGTTACCAACTTC-ACACTGGGGCACTGTTTA-ACCAATTGCATTCAATCAAC-TATTTCACCGATCAAAT-TAAGA-GAT-TCATCCACGAACCAGGAC---TGGATAACACTATAAA-TAGTTGCAAGACTTCCAAAA----CC----GAAAAC-CA--A----AACCAATTCCCT-TTAACC-A--GTTT-TCCATGACGAGTCGAAATA--CATG-ATAAA------ATA-CA---ATATTTATCGCA-GTCGGAAAAGATGAGGAACACAGAAAACACAAATATAACCGC---GATTTATCAATAATTCT-CATAATTTGCCGGTA------TCTACAGGTTGAAAACAA--AACT-TAA--ATG-TAAATGGAACTTATTGAACAGGTTTACCTGCTTCAAATC--GCTGTATTCGCTGAAA-TATC---G-----TCG---TAT-TACTTGTTTTTATTCAAAACATCGACATT----------TCTTTT------------A-------AGGCTGAAGTTTTCGGCGAATT---TC----GG----GACTGGTTCgtcgatgttttgaataaaaacaagtaatacgacgatatttcagcgaatacagcgatttgaagcaggtaaacctgttcaataagttccatttacatttaagttttgttttcaacctgtagataccggcaaattatgagaattattgataaatcgcggttatatttgtgttttctgtgttcctcatcttttccgactgcgataaatattgtattttatcatgtatttcgactcgtcatggaaaactggttaaagggaattggttttggttttcggttttggaagtcttgcaactatttatagtgttatccagtcctggttcgtggatgaatctcttaatttgatcggtgaaatagttgattgaatgcaattggttaaacagtgccccagtgtgaagttggtaaccttgtctatatatcttaatccattttttaaactttttttttagttttatgtgttagggttagggtaaggttaaaaaaaatattattggg
gi|4 : atatgaaatcactgggaag------A-AACAA-------AGGCTT--TTTTCCGG----TG---TG----TA----TATTGACTCAATGG-GG-AACACTGGGAA----CCAG---------CTCGCC-AAAAC-TTCCGCCATTGAGAAAATtattggg
gi|4 : gacaacagaaccttcaaAAATGTTA-A-GAT-TTATCCACGAACTTG---------TTAGCACAACAAAATTGTTGCA--GTTTCCGAAA----CC----GAAAAC-AA--ACAAAAAACAATTCCTA-TTAACC-G--TTTT--CTGTGACAAGTCTAAATG--CAT-AAAAAC------ATT-TA---ACATTTCTCGTGGGTTAGAAAGCAATTAAAACCTTCAGAATGCCATAATAATCAC---GATTTATCTATAATTCT-CCAAATTTGCCATTAACTACTTGTACAAATTGAAAACAA--AACA-CAA--ATG-GAAATGGAATTGATTAAACAGCATTACACGCTTCAATTTTAGCTGTATTCGCTGAGC-TATC---G-----TCGGATTTT-T-CATGTTTTTATT-GAAACAT---AA------------ACATTT------gtttatgtttcaataaaaacatgaaaaatccgacgatagctcagcgaatacagctaaaattgaagcgtgtaatgctgtttaatcaattccatttccatttgtgttttgttttcaatttgtacaagtagttaatggcaaatttggagaattatagataaatcgtgattattatggcattctgaaggttttaattgctttctaacccacgagaaatgttaaatgtttttatgcatttagacttgtcacagaaaacggttaataggaattgttttttgtttgttttcggtttcggaaactgcaacaattttgttgtgctaacaagttcgtggataaatcttaacatttagctgggtgctaaaaggagtaatgca
gi|5 : gacaacagaaccttcaaaaacaaaggcttttttccggtgtgtatattgactcaatggggaacactgggaaccagctcgccaaaacttccgccattgagaAATTCGCCAATA------TCTAC---TTGAA------------------TG-TAAATGTAGCATATTTAACAGCATTATCCTCTTCAAATC--GTTGTATTAGCTGAAC-TATA---G-----TCA--TTTTATATATATATTTATTCAAAATATC-GAA------------TTTTTTTCTTTGACAACAAAACATACAGACTT--ATATCCTG-----T---GA----T-----CACTGA--GAAC-G-GG-------GAGAA----CCAGTCCCTGAAATT-GCCAAACACTTTTCACCATCACGGAAATTagctgggtgctaaaaggagtaatgca
gi|5 : aaacgtctgtaaatcgtcggaaaacctttatTTACCTGCTTCAAATT--GCTGTATTCGCCACACATA------------------TT-TACATGTTTTTATTAAAAATATGGAAA------------Ttccatatttttaataaaaacatgtaaatatgtgtggcgaatacagcaatttgaagcaggtaatc
gi|6 : aaacgtctgtaaatcgtcggaaaacctttataattcgccaatatctacttgaatgtaaatgtagcatatttaacagcattatcctcttcaaatcgttgtattagctgaactatagtcattttatatatatatttattcaaaatatcgaatttttttctttgacaacaaaacatacagacttatatcctgtgatcactgagaacggggagaaccagtccctgaaattgccaaacacttttcaccatcacggaaACTATAAA-TGGTTGTA--GTTTCCGAAA----CTTTCGGAAAAC-AA--A----AATCAATTTCCT-TTGACC-G--TTTT-TCCGTGACAAGTCGAAATG--CATGAAAAAA-------TA-CA---ATATTTATCGCAGGTCGGAAAAAATGTGAAACACAGAAAATGCCAATATAACCAC---AATTTATCAATAATTCT-CCAAGAGTGCCGGTA------TCCATACGTTGTAAACAA--AACT-TAC--GCG-TAAATGGCACTTATTCAACATGTTTACCTGTCTCAAATT--ACTGTATTTGAAGAAC-TATG---T-----TCG--TTTT-T-CACGTTTTTATTCAAAtc
gi|7 : CACAGGCGGCAATATC-GGTGTTTGGATTACCCCCTTTACCGATTAAGAAAATGAA---ACCT-----------TTAAAAAAAAAATGGCCAGAA-AGCAAATAAAAATTAAAAAAAATTAA----CCC--------------------CCC---CCCAAA-----AAAA--AAAAAAAAAGAATAACAAACAAAATGTT-T---GTT----TTTGGATTTA--GATATATAAACAAGGTAACCAACACC-ACACTTGACCA-TGGTTACACTAACTGCATTCATTCAAC-TATTTCACTGATCAAAT-ATAAA-GAT-TTATCCACGAACCAGAGC---TGGTTAACA
gi|8 : -AA--A----AA-CAATTCCCA-TTAATC-AAATTTTATC---GACAAATCGAACTG--TCTGGAATAC------AGT-CA---ACGTTCAGAATAAGTAAGAAAGCCTGT---------AAAATGCAAACA---CTGT---GGTTTATCAAGTATTCT-CAAAAATTGCCAATA------TCTGGAAGTTG-AAATAATGAATT-AAA--GCACCAAATGGAATGTATTAAACAGTATAACCTGCTTCAAACC--ATAATTCTTGATGAAA-TACT---G-----CCG---ATT-TACACGTTATTATTGAAAACAT
gi|9 : aATTTCACTGATCAAAT-TTAGA-GAA-TTATCCACGAGTCTGGGCTGGTGGTTACCACTTCAGA-TTGTTGTA--GTTT---------------------C-AA--A----AAACAATTCACT-TCGACC-A--TTTT-T--ATAACAGG-CGAAATG--CATAAAAAAATTCAACATT-CA---ACATTTATCGTAGGTTGG-AAGCCCTTGGGACACTCAAAATGCCAATTTAACCTT---GATTTATTAATGATTCT-CCAAATTTGCCAGTT------TCTCAAAGTTGATAACAA--AACT-
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTATAGATTCAACAGGTAAATTGGCATTAACAACGCATACAATAATTATAATAAAGACAAGAGAAATAT
Unaligned ( gi|22 ): TTCTTGGCATAGGTGAGAGTATCAGTGTTTAGAGGGCCCAATTTACCTGATGTTCGTCCCCCACACCC
Unaligned ( gi|25 ): TTTCCTAATAAATTGATAATTCAACAATTTATTAAATGACCAAGAAACCAGATCAAATATGA
Unaligned ( gi|29 ): AAAAAAACACTTAAGAAACCGTGGAATACAGATTAGGGTA
Unaligned ( gi|30 ): ATTAAGATGATAATAAACCAGAACTGTAGCGGGTG