lowQualScore : 99999999999999 11 1111111111 1111111 22222222 1111 111 2222 1 22222222222 22 11 4
lowQualScore : 3 5 33333333333333 777 4 44 555 4444444444 1 2 3 0000000 77777 00000000 2 2 7777 2 333 5555 8 4 5 3 3 11111111111 7777 8 5 5 5 99 2 1 00 22 0
lowQualScore : . . .............. ... . .. ... .......... . . . ....... ..... ........ . . .... . ... .... . . . . . ........... .... . . . . .. . . .. .. .
lowQualScore : 5 0 99999999999999 888 4 11 222 6666666666 6 8 6 8888888 22222 00000000 5 5 6666 9 555 1111 4 4 4 1 1 00000000000 7777 0 0 0 0 22 5 0 00 00 0
consensus : ACGTAACGTCATA-TGACGTATTCAT----------ATTCAT---AAATAC-CTCGCGCTATGACG--TA----------TTCATTCATAAATA-------CTATGATA----T--CC----T-TGC-GCTACT---ATA-AAAA-A-TAGACCGG-AATAAAAAATCTTNAAAAATCAC-AC-A--T-T-AGG-GTT----GTATGC-AA-GA-AA-A-GTATCTTTCATGGGGTTTTTGGTG-CAGA
Reference ( gi|1 ) : ATGTAACGTCATA-TGACATATTCAT-----CGATGATTCAT---AAATAC-CTCATGCTATGACA--TA----------TTCGTTCATAAATA-------CTATGATG----T--CA----T-TGC-GCTACA---ATA-AAAA-G-TAGACTAT-AATAAAAAATCTTGAAAAATCAC-AC-A--T-T-AAG-ATT----GTATGC-AA-AA-AA-A-ATATCTTTCAAAGGGTTTTCAGTGTCAGAACAGTTATACATCGGTATGGAATTTTTCATCATTATGGTCAATAACCCTTTAAGTTTGATAAAA
gi|8 : ATGTAATACCATA-CGACATATTCATAAATTC-ATAATTCAT---AAAAAC-CTTGCTCTATGACA--TA----------TTCATTTATTGATA-------TTATAATGATTTT--CAATCCT-TGC-GCT
gi|5 : ttacactgacactcctagtactatgACGTAACGTTACA-TGACGTATTCAT------------TCAT---CGATGC-CGTGCGCTATGACG--TA----------TTGAT-----AGTT-------CTATGATA----T--CC----A-TGC-GCTACC---ATG-AAAACA-TAGTTTG--GATTAAAAATCTTAAAATATCAC-ATAA--A-T-AGG-GTT----GTATttt
gi|4 : tcgtcatataACGTCACGTCATA-TGACGTATTC------------ATTAAT---AAATAC-CTTGTGATATGACACCTA----------T--GTT----GATA-------CTATGATA----TA-TA----TGTGCTACTACAAGTATA-AAAATA-TAGACGGG-AAT-AAAAGTTT---AAAATTAT-AA-A--TAT-CGT-GTT----ATATGC-AATAA-AA-T-GTATATTTCGTGCGATTTTTGGTGttcatgggattttcgttgcgggtggaatattcaccccctcgcgataactgttttg
gi|13 : tcacatgcttaacataacctcctagctcaatgACGTAACGTCAT--TCATACAATCCT--------TGAGCTATGGAAAATAC-CTCCCGCTTTGAAG--TA----------TTCATTCACAAATA-------ATATG--G----T--CACC--T-TGT-GCTAC
gi|18 : ACGTAATGTCATAATGACATATTCAT------------TCAT---TAATAC-CGCTTGCTATGATG--TA----------ta
gi|6 : acgACGTAACGCTATA-TAACGTATTC------------ATTCAA---ACATAT----------TGAGG--TA----------TTCG-------ATA-------TTGTGATA----T--CC----T-TGC-GCCATT---ATATAAAA-C-TAGACCGG-AA-AAACAATCTTATCAAGTCAC-AC-G--T-C-AAGTGTTTTCGGTACGG-AT-AA-AA-A-
gi|2 : tcacgcgcttatcacacactcctcgtgttataGTAACGTCATA-TGCCATTTTCAT------------TCTT---AGATAT-CTCGCACTAAGACA--TACATGTTTGAATTCGTTCATAAATA-------CTATGCTA----T--CA----T-ATA-GCTACA---ATA-AAAG-GTTAGATTAT-------AAATCTT---AAATCAttccgtctgtcgctttcttgg
gi|3 : tatatacccgacactggtgtctgtgtaatttgactgttgtggacttttcatgctatacactcttcgcgtgttaatcctcgctttatagcAACGCTATA-TAACATTTTCAT-----TAA-----------AAAAACTCTC--GCTGTTACG--TT----------TTCATTCATAAATA-------CTATGAAA----T--TC----T-TGT-GCTAT----TTA-AATA-A-TAGAC----AGGAAAAAATCTTTAAAACTCAT-AC-A--T-TCAGG-ATT----GTTTGC-gtaacagtgttctatgca
gi|7 : ATTCGT---AA-TAC-TTCGCGCAACGGCG--TG----------TTCATTCATAAATA-------TCAGTATA----T--CC----T-TGT-ACTACT---TTG-AAAA-A-TAGAATGA-AAT-AAAAATCTTTATAAA-CAC-AC--------AGA-ATT----GTATGC-AA-GA-AA-ATGTAT-TTTCATGGGGTTnnnnnnnnnnagatggacaattccgtcccgaggggttagcactagggacggaatttttctatccggatcgagaactctataaatactatgaa
gi|18 : tggtataacgccataagaagttgcTCATA--ATGACA--TA----------TTCATTCATTAATACCGCTTGCTATGATG----T--
gi|12 : acgacgtaatgTGACT--TA----------TTCATTGATGATTA-------CTATGGTA----T--CC----T-TGC-----------TT-AAAA-G-TAGAC-ATGAAT-AAAAATCTGAAAAAATCAT-GC-AGTT-T-ATG-A-T----GAATGC-AA-GA-AA-a
gi|15 : A--TA----------TTTATTCATAATTA-------CTGTGATA----TATCC----T-TGT-GCTACT---ATT-AAAA-G--AAACCGG-AATGAAAA-TCTTGATAAACCAC-AC-AG-T-T-A
gi|19 : -------CTATGATA----T--TC----T-TGC-GCTACA---ATA-GAAA-A-TAGACCGG-AATAg
gi|9 : TATGATA----T--TC----T-TTC-ACTACT---CTA-GAAA-A-TAGTCTGG-AATAAAAAAATTT-AAAAATCACAAC-A--T-T-ACA-GTT----GCATGC-AA-GATAA-A-GTACCTTTCATGAGGTTTT
gi|10 : tTACGATA----T--TC----T-TGC-ACTTCT---ACA-TAAA-A-TAGACCGG-AATAAAAATCTTTAAAAAATCAC-AA-AG-T-T-ACA-GTT----GTATGCGAA-AA-GA-A-GTATCCTTCAtg
gi|16 : TATGGTG----T--CC----T-TG--GCAACT---ATT-AAAA-G-TAATCCTG-AATAAAA--TCTTCAAAAATCAC-AC-AT-T-T-TGG-ATT----GTATAC-Atggtt
gi|11 : ATGGTA----T--AT----T-TCC-GCTACC---ATA-AAAA---TAAAGCGG-AATAA-AAATCTT-AAAAAGCAT-AC-ATTT-T-GAG-TTG----GTATAC-AA-GA-AATA-GTATCTTC--ATGGGTTTT
gi|17 : ATGATA----T--CC----A-TGC-GCTACT---ATA-AAA----T-TACCAG-AATAAAAA-TCTTCAAAAATCCC-AC-A--
gi|14 : -TAGACCAT-AAT-------CTTAAAAAATCAA-AC-AG-T-T-AGG-GTT----GTATACCAG-AA-AA-A-ATATCTTTTATGGGGTTTTTGGTG-CAGAaattgggttttatt
Alignments
lowQualScore : 5555555555555555 1111111111 11111 111 1
lowQualScore : 55 4 1 8888888888888888 777 1 1 4444444444 22 1 33 88888888 777777 44 777 1 0 7 6 2 88888 2 2 2 2 3 4 4 222 2 0
lowQualScore : .. . . ................ ... . . .......... .. . .. ........ ...... .. ... . . . . . ..... . . . . . . . ... . .
lowQualScore : 55 0 1 2222222222222222 000 6 2 6666666666 66 5 22 55555555 222222 11 888 4 1 9 2 7 66666 7 7 9 9 3 4 4 111 5 0
consensus : ACGTAACGTCAT--A-TGACGTATTCAT-----A----------TCAT---AAATACCTCGCGCTATGACGTA----------TTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTG-CGGA
Reference ( family-1581 ) : ACGTAACGTCAT--A-TGACGTATTCAT-----A---------TTCAT---AAATACCTCGCGCTATGACGTA----------TTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTTGGTG-CAGA
gi|1 : ATGTAACGTCAT--A-TGACATATTCATCGATGA---------TTCAT---AAATACCTCATGCTATGACATA----------TTCGTTCATAAATACTATG--AT--------GTCATTGCGCTAC------AATA-AAAA-G-TAGACTATAATAAAAAATCTTGAAAAATCAC-AC--A--T-T-AAG-ATT-GTATGC-AAAA-AA-A-A-TATCTTTCAAAGGGTTTTCAGTGTCAGA
gi|10 : TACG--AT--------ATTCTTGCACTTC------TACA-TAAA-A-TAGACCGGAATAAAAATCTTTAAAAAATCAC-AA--AG-T-T-ACA-GTT-GTATGCGAAAA-GA-A-G-TATCCTTCATGGacagttatacatcggtatggaatttttcatcattatggtcaataaccctttaagtttgataaaa
gi|11 : ATG--GT--------ATATTTCCGCTAC------CATA-AAAA---TAAAGCGGAATA-AAAATCTT-AAAAAGCAT-AC--AT-T-T-TGA-GTTGGTATAC-AAGA-AATA-G-TATC-TTCATGGGTTTTtt
gi|12 : TGACTTA----------TTCATTGATGATTACTATG--GT--------ATCCTTGC-------------TT-AAAA-G-TAGACATGAAT-AAAAATCTGAAAAAATCAT-GC--AGTT-T-ATG-A-T-GAATGC-AAGA-AA-
gi|13 : ACGTAACGTCATTCA-T-ACA-ATCCTTG----A---------GCTATGGAAAATACCTCCCGCTTTGAAGTA----------TTCATTCACAAATAATATG--GT--------CACCTTGTGCTAC------TA
gi|14 : -A-TAGACC---ATAA----TCTTAAAAAATCAA-AC--AG-T-T-AGG-GTT-GTATAC-CAGA-AA-A-AATATCTTTTATGGGGTTTTTGGTG-CAGA
gi|15 : gtatatTA----------TTTATTCATAATTACTGTGATAT--------ATCCTTGTGCTAC------TATT-AAAA-G--AAACCGGAAT-GAAAATCTTGATAAACCAC-AC--AG-T-T-AGtccta
gi|16 : aTATG--GT--------GTCCTTG-GCAAC------TATT-AAAA-G-TAATCCTGAATAAAA--TCTTCAAAAATCAC-AC--AT-T-T-TGG-ATT-GTATAC-A
gi|17 : ATG--AT--------ATCCATGCGCTAC------TAT---AAA-A-T-TACCAGAAT-AAAAATCTTCAAAAATCCC-ACAAA--T-T--GG-GTT-TTAT
gi|18 : ACGTAATGTCAT--AATGACATATTCAT----------------TCAT---TAATACCGCTTGCTATGATGTA----------t
gi|19 : acgCTATG--AT--------ATTCTTGCGCTAC------AATA-GAAA-A-TAGACCGGAATA
gi|2 : CGTAACGTCAT--A-TGCCATTTTCAT----------------TCTT---AGATATCTCGCACTAAGACATACATGTTTGAATTCGTTCATAAATACTATG--CT--------ATCATATAGCTAC------AATA-AAAG-GTTAGATT---AT---AAATCTT---AAATCA--GT--A--A-C-AGT-GTT-CTATGC-A
gi|3 : tatatacccgacactggtgtctgtgtaatttgactgttgtggacttttcatgctatacactcttcgcgtgttaatcctcgctttatagAACGCTAT--A-TAACATTTTCAT-----------------TAA---AAA-AACTCTCGCTGTTACGTT----------TTCATTCATAAATACTATG--AA--------ATTCTTGTGCTAT------T-TA-AATA-A-TAGACAGG---AAAAAATCTTTAAAACTCAT-AC--A--T-TCAGG-ATT-GTTTGC-
gi|4 : ACGTCACGTCAT--A-TGACGTATTC-------A---------TTAAT---AAATACCTTGTGATATGAC--A----------CCTAT--GTTGATACTATG--AT--------ATATATGTGCTACTACAAGTATA-AAAATA-TAGACGGGAATAAAAG---TTT-AAAATTAT-AA--A--TAT-CGT-GTT-ATATGC-AATA-AA-ATG-TATATTTCGTGCGATTTTTGGTG-nnnnnnnnnnagatggacaattccgtcccgaggggttagcactagggacggaatttttctatccggatcgagaactctataaatactatgaa
gi|5 : tcacatgcttaacataacctcctagctcaatgACGTAACGTTAC--A-TGACGTATTCAT----------------TCAT---CGATGCCGTGCGCTATGACGTA----------TTGAT-----AGTTCTATG--AT--------ATCCATGCGCTAC------CATG-AAAACA-TAGTTTGG-ATTAAAAATCTTAAAATATCAC-ATA-A--A-T-AGG-GTT-GTA--------------------TTTCATGGGATTTTCGTTG-CGG
gi|6 : tcgtcatataACGTAACGCTAT--A-TAACGTATTCAT----------------TCAA---ACATAT---------TGAGGTA----------TTCG-------ATATTGTG--AT--------ATCCTTGCGCCAT------TATATAAAA-C-TAGACCGGAA-AAACAATCTTATCAAGTCAC-AC--G--T-C-AAGTGTT-gtggaatattcaccccctcgcgataactgttttg
gi|7 : tcacgcgcttatcacacactcctcgtgttataTAACGCCAT--A-AGAAGT-TGCAT----------------TCGT---AA-TACTTCGCGCAACGGCGTG----------TTCATTCATAAATATCAGT--AT--------ATCCTTGTACTAC------TTTG-AAAA-A-TAGAATGAAAT-AAAAATCTTTATAAA-CAC-AC---------AGA-ATT-GTATGC-AAGA-AA-ATG-TAT-TTTCATGGGGTTttcggtacggataaaaattccgtctgtcgctttcttgg
gi|8 : tggtaATGTAATACCAT--A-CGACATATTCAT-----AAATTCATAATTCAT---AAAAACCTTGCTCTATGACATA----------TTCATTTATTGATATTATA--ATGATTTTCAATCCTTGCGCT
gi|9 : ttacactgacactcctagtactatgTATG--AT--------ATTCTTTCACTAC------TCTA-GAAA-A-TAGTCTGGAATAAAAAA-ATTTAAAAATCACAAC--A--T-T-ACA-GTT-GCATGC-AAGATAA-A-G-TACCTTTCATGAGGTTTTTGttt
Alignments
lowQualScore : 5555555555555555 1111111111 11111 111
lowQualScore : 55 4 1 777 55 2222222222222222 4 1 1 4444444444 22 1 33 88888888 777777 44 777 1 0 7 6 2 88888 2 2 2 2 3 4 4 222 2
lowQualScore : .. . . ... .. ................ . . . .......... .. . .. ........ ...... .. ... . . . . . ..... . . . . . . . ... .
lowQualScore : 55 0 1 000 55 8888888888888888 0 6 2 6666666666 66 5 22 55555555 222222 11 888 4 1 9 2 7 66666 7 7 9 9 3 4 4 111 5
consensus : ACGTAACGTCAT--A-TGACGTATTC---A--T----------------T-CATAAATACCTCGCGCTATGACGTA----------TTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTGCGGA
Reference ( family-1581 ) : ACGTAACGTCAT--A-TGACGTATTC---A--T-----A----------T-CATAAATACCTCGCGCTATGACGTA----------TTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTGCGGA
gi|1 : ATGTAACGTCAT--A-TGACATATTC---A--TCGATGA----------TTCATAAATACCTCATGCTATGACATA----------TTCGTTCATAAATACTATG--AT--------GTCATTGCGCTAC------AATA-AAAA-G-TAGACTATAATAAAAAATCTTGAAAAATCAC-AC--A--T-T-AAG-ATT-GTATGC-AAAA-AA-A-A-TATCTTTCAAAGGGTTTTCAGTG
gi|10 : TACG--AT--------ATTCTTGCACTTC------TACA-TAAA-A-TAGACCGGAATAAAAATCTTTAAAAAATCAC-AA--AG-T-T-ACA-GTT-GTATGCGAAAA-GA-A-G-TATCCTTCATGGtcagaacagttatacatcggtatggaatttttcatcattatggtcaataaccctttaagtttgataaaa
gi|11 : ATG--GT--------ATATTTCCGCTAC------CATA-AAAA---TAAAGCGGAATA-AAAATCTT-AAAAAGCAT-AC--AT-T-T-TGA-GTTGGTATAC-AAGA-AATA-G-TATC-TTCATGGGTTTTtt
gi|12 : TGACTTA----------TTCATTGATGATTACTATG--GT--------ATCCTTGC-------------TT-AAAA-G-TAGACATGAAT-AAAAATCTGAAAAAATCAT-GC--AGTT-T-ATG-A-T-GAATGC-AAGA-AA-
gi|13 : ACGTAACGTCATTCA-T-ACA-ATCCTTGAGCT-----A----------T-GGAAAATACCTCCCGCTTTGAAGTA----------TTCATTCACAAATAATATG--GT--------CACCTTGTGCTAC------TA
gi|14 : -A-TAGACC---ATAA----TCTTAAAAAATCAA-AC--AG-T-T-AGG-GTT-GTATAC-CAGA-AA-A-AATATCTTTTATGGGGTTTTTGGTGCAGA
gi|15 : gtatatTA----------TTTATTCATAATTACTGTGATAT--------ATCCTTGTGCTAC------TATT-AAAA-G--AAACCGGAAT-GAAAATCTTGATAAACCAC-AC--AG-T-T-AGtccta
gi|16 : aTATG--GT--------GTCCTTG-GCAAC------TATT-AAAA-G-TAATCCTGAATAAAA--TCTTCAAAAATCAC-AC--AT-T-T-TGG-ATT-GTATAC-A
gi|17 : ATG--AT--------ATCCATGCGCTAC------TAT---AAA-A-T-TACCAGAAT-AAAAATCTTCAAAAATCCC-ACAAA--T-T--GG-GTT-TTAT
gi|18 : ACGTAATGTCAT--AATGACATATTC---A--T----------------T-CATTAATACCGCTTGCTATGATGTA----------t
gi|19 : acgCTATG--AT--------ATTCTTGCGCTAC------AATA-GAAA-A-TAGACCGGAATA
gi|2 : CGTAACGTCAT--A-TGCCATTTTC---A--T----------------T-CTTAGATATCTCGCACTAAGACATACATGTTTGAATTCGTTCATAAATACTATG--CT--------ATCATATAGCTAC------AATA-AAAG-GTTAGATT---AT---AAATCTT---AAATCA--GT--A--A-C-AGT-GTT-CTATGC-A
gi|3 : tatatacccgacactggtgtctgtgtaatttgactgttgtggacttttcatgctatacactcttcgcgtgttaatcctcgctttatagAACGCTAT--A-TAACATTTTC---A--T------------------TAAAAA-AACTCTCGCTGTTACGTT----------TTCATTCATAAATACTATG--AA--------ATTCTTGTGCTAT------T-TA-AATA-A-TAGACAGG---AAAAAATCTTTAAAACTCAT-AC--A--T-TCAGG-ATT-GTTTGC-
gi|4 : ACGTCACGTCAT--A-TGACGTATTC---A--T----------------T-AATAAATACCTTGTGATATGAC--A----------CCTAT--GTTGATACTATG--AT--------ATATATGTGCTACTACAAGTATA-AAAATA-TAGACGGGAATAAAAG---TTT-AAAATTAT-AA--A--TAT-CGT-GTT-ATATGC-AATA-AA-ATG-TATATTTCGTGCGATTTTTGGTGnnnnnnnnnnagatggacaattccgtcccgaggggttagcactagggacggaatttttctatccggatcgagaactctataaatactatgaa
gi|5 : tcacatgcttaacataacctcctagctcaatgACGTAACGTTAC--A-TGACGTATTC---A--T----------------T-CATCGATGCCGTGCGCTATGACGTA----------TTGAT-----AGTTCTATG--AT--------ATCCATGCGCTAC------CATG-AAAACA-TAGTTTGG-ATTAAAAATCTTAAAATATCAC-ATA-A--A-T-AGG-GTT-GTA--------------------TTTCATGGGATTTTCGTTGCGG
gi|6 : tcgtcatataACGTAACGCTAT--A-TAACGTATTC---A--T----------------T-CAAACATAT---------TGAGGTA----------TTCG-------ATATTGTG--AT--------ATCCTTGCGCCAT------TATATAAAA-C-TAGACCGGAA-AAACAATCTTATCAAGTCAC-AC--G--T-C-AAGTGTT-gtggaatattcaccccctcgcgataactgttttg
gi|7 : tcacgcgcttatcacacactcctcgtgttataTAACGCCAT--A-AGAAGT-TGC---A--T----------------T-CGTAA-TACTTCGCGCAACGGCGTG----------TTCATTCATAAATATCAGT--AT--------ATCCTTGTACTAC------TTTG-AAAA-A-TAGAATGAAAT-AAAAATCTTTATAAA-CAC-AC---------AGA-ATT-GTATGC-AAGA-AA-ATG-TAT-TTTCATGGGGTTttcggtacggataaaaattccgtctgtcgctttcttgg
gi|8 : tggtaATGTAATACCAT--A-CGACATATTC---A--T-----AAATTCATAATT-CATAAAAACCTTGCTCTATGACATA----------TTCATTTATTGATATTATA--ATGATTTTCAATCCTTGCGCT
gi|9 : ttacactgacactcctagtactatgTATG--AT--------ATTCTTTCACTAC------TCTA-GAAA-A-TAGTCTGGAATAAAAAA-ATTTAAAAATCACAAC--A--T-T-ACA-GTT-GCATGC-AAGATAA-A-G-TACCTTTCATGAGGTTTTTGttt
Alignments
lowQualScore : 33333333333 1111111111 11111 111
lowQualScore : 4 1 22222222222 8888 777 1 1 4444444444 22 1 33 88888888 777777 44 777 1 0 7 6 2 88888 2 2 2 2 3 4 4 222 2
lowQualScore : . . ........... .... ... . . .......... .. . .. ........ ...... .. ... . . . . . ..... . . . . . . . ... .
lowQualScore : 0 1 00000000000 5555 000 6 2 6666666666 66 5 22 55555555 222222 11 888 4 1 9 2 7 66666 7 7 9 9 3 4 4 111 5
consensus : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTGCGGA
Reference ( family-1581 ) : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTGCGGA
gi|1 : ATGTAACGTCATA-TGACATATTCATCGATGAT----T----CAT---AAATACCTCATGCTATGACAT----------ATTCGTTCATAAATACTATG--AT--------GTCATTGCGCTAC------AATA-AAAA-G-TAGACTATAATAAAAAATCTTGAAAAATCAC-AC--A--T-T-AAG-ATT-GTATGC-AAAA-AA-A-A-TATCTTTCAAAGGGTTTTCAGTG
gi|10 : TACG--AT--------ATTCTTGCACTTC------TACA-TAAA-A-TAGACCGGAATAAAAATCTTTAAAAAATCAC-AA--AG-T-T-ACA-GTT-GTATGCGAAAA-GA-A-G-TATCCTTCATGGtcagaacagttatacatcggtatggaatttttcatcattatggtcaataaccctttaagtttgataaaa
gi|11 : ATG--GT--------ATATTTCCGCTAC------CATA-AAAA---TAAAGCGGAATA-AAAATCTT-AAAAAGCAT-AC--AT-T-T-TGA-GTTGGTATAC-AAGA-AATA-G-TATC-TTCATGGGTTTTtt
gi|12 : TGACTT----------ATTCATTGATGATTACTATG--GT--------ATCCTTGC-------------TT-AAAA-G-TAGACATGAAT-AAAAATCTGAAAAAATCAT-GC--AGTT-T-ATG-A-T-GAATGC-AAGA-AA-
gi|13 : ACGTAACGTCAT--TCATACAATCCT-----------TGAGCTATGGAAAATACCTCCCGCTTTGAAGT----------ATTCATTCACAAATAATATG--GT--------CACCTTGTGCTAC------TA
gi|14 : -A-TAGACC---ATAA----TCTTAAAAAATCAA-AC--AG-T-T-AGG-GTT-GTATAC-CAGA-AA-A-AATATCTTTTATGGGGTTTTTGGTGCAGA
gi|15 : gtatatT----------ATTTATTCATAATTACTGTGATAT--------ATCCTTGTGCTAC------TATT-AAAA-G--AAACCGGAAT-GAAAATCTTGATAAACCAC-AC--AG-T-T-AGtccta
gi|16 : aTATG--GT--------GTCCTTG-GCAAC------TATT-AAAA-G-TAATCCTGAATAAAA--TCTTCAAAAATCAC-AC--AT-T-T-TGG-ATT-GTATAC-A
gi|17 : ATG--AT--------ATCCATGCGCTAC------TAT---AAA-A-T-TACCAGAAT-AAAAATCTTCAAAAATCCC-ACAAA--T-T--GG-GTT-TTAT
gi|18 : ACGTAATGTCATAATGACATATTCAT-----------T----CAT---TAATACCGCTTGCTATGATGT----------At
gi|19 : acgCTATG--AT--------ATTCTTGCGCTAC------AATA-GAAA-A-TAGACCGGAATA
gi|2 : CGTAACGTCATA-TGCCATTTTCAT-----------T----CTT---AGATATCTCGCACTAAGACATACATGTTTGAATTCGTTCATAAATACTATG--CT--------ATCATATAGCTAC------AATA-AAAG-GTTAGATT---AT---AAATCTT---AAATCA--GT--A--A-C-AGT-GTT-CTATGC-A
gi|3 : tatatacccgacactggtgtctgtgtaatttgactgttgtggacttttcatgctatacactcttcgcgtgttaatcctcgctttatagAACGCTATA-TAACATTTTCAT-----------T----AA----AAA-AACTCTCGCTGTTACGT----------TTTCATTCATAAATACTATG--AA--------ATTCTTGTGCTAT------T-TA-AATA-A-TAGACAGG---AAAAAATCTTTAAAACTCAT-AC--A--T-TCAGG-ATT-GTTTGC-
gi|4 : ACGTCACGTCATA-TGACGTATTCAT-----------T----AAT---AAATACCTTGTGATATGAC------------ACCTAT--GTTGATACTATG--AT--------ATATATGTGCTACTACAAGTATA-AAAATA-TAGACGGGAATAAAAG---TTT-AAAATTAT-AA--A--TAT-CGT-GTT-ATATGC-AATA-AA-ATG-TATATTTCGTGCGATTTTTGGTGnnnnnnnnnnagatggacaattccgtcccgaggggttagcactagggacggaatttttctatccggatcgagaactctataaatactatgaa
gi|5 : tcacatgcttaacataacctcctagctcaatgACGTAACGTTACA-TGACGTATTCAT-----------T----CAT---CGATGCCGTGCGCTATGACGT----------ATTGAT-----AGTTCTATG--AT--------ATCCATGCGCTAC------CATG-AAAACA-TAGTTTGG-ATTAAAAATCTTAAAATATCAC-ATA-A--A-T-AGG-GTT-GTA--------------------TTTCATGGGATTTTCGTTGCGG
gi|6 : tcgtcatataACGTAACGCTATA-TAACGTATTCAT-----------T----CAA---ACATAT---------TGAGGT----------ATTCG-------ATATTGTG--AT--------ATCCTTGCGCCAT------TATATAAAA-C-TAGACCGGAA-AAACAATCTTATCAAGTCAC-AC--G--T-C-AAGTGTT-gtggaatattcaccccctcgcgataactgttttg
gi|7 : tcacgcgcttatcacacactcctcgtgttataTAACGCCATA-AGAAGT-TGCAT-----------T----CGT---AA-TACTTCGCGCAACGGCGT----------GTTCATTCATAAATATCAGT--AT--------ATCCTTGTACTAC------TTTG-AAAA-A-TAGAATGAAAT-AAAAATCTTTATAAA-CAC-AC---------AGA-ATT-GTATGC-AAGA-AA-ATG-TAT-TTTCATGGGGTTttcggtacggataaaaattccgtctgtcgctttcttgg
gi|8 : tggtaATGTAATACCATA-CGACATATTCATAAATTCATAATT----CAT---AAAAACCTTGCTCTATGACAT----------ATTCATTTATTGATATTATA--ATGATTTTCAATCCTTGCGCT
gi|9 : ttacactgacactcctagtactatgTATG--AT--------ATTCTTTCACTAC------TCTA-GAAA-A-TAGTCTGGAATAAAAAA-ATTTAAAAATCACAAC--A--T-T-ACA-GTT-GCATGC-AAGATAA-A-G-TACCTTTCATGAGGTTTTTGttt
Alignments
lowQualScore : 33333333333 1111111111 11111 111
lowQualScore : 4 1 22222222222 8888 777 1 1 4444444444 22 1 33 88888888 777777 44 777 1 0 7 6 2 88888 2 2 2 2 3 4 4 222 2
lowQualScore : . . ........... .... ... . . .......... .. . .. ........ ...... .. ... . . . . . ..... . . . . . . . ... .
lowQualScore : 0 1 00000000000 5555 000 6 2 6666666666 66 5 22 55555555 222222 11 888 4 1 9 2 7 66666 7 7 9 9 3 4 4 111 5
consensus : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTGCGGA
Reference ( family-1581 ) : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTGCGGA
gi|1 : ATGTAACGTCATA-TGACATATTCATCGATGAT----T----CAT---AAATACCTCATGCTATGACAT----------ATTCGTTCATAAATACTATG--AT--------GTCATTGCGCTAC------AATA-AAAA-G-TAGACTATAATAAAAAATCTTGAAAAATCAC-AC--A--T-T-AAG-ATT-GTATGC-AAAA-AA-A-A-TATCTTTCAAAGGGTTTTCAGTG
gi|10 : TACG--AT--------ATTCTTGCACTTC------TACA-TAAA-A-TAGACCGGAATAAAAATCTTTAAAAAATCAC-AA--AG-T-T-ACA-GTT-GTATGCGAAAA-GA-A-G-TATCCTTCATGGtcagaacagttatacatcggtatggaatttttcatcattatggtcaataaccctttaagtttgataaaa
gi|11 : ATG--GT--------ATATTTCCGCTAC------CATA-AAAA---TAAAGCGGAATA-AAAATCTT-AAAAAGCAT-AC--AT-T-T-TGA-GTTGGTATAC-AAGA-AATA-G-TATC-TTCATGGGTTTTtt
gi|12 : TGACTT----------ATTCATTGATGATTACTATG--GT--------ATCCTTGC-------------TT-AAAA-G-TAGACATGAAT-AAAAATCTGAAAAAATCAT-GC--AGTT-T-ATG-A-T-GAATGC-AAGA-AA-
gi|13 : ACGTAACGTCAT--TCATACAATCCT-----------TGAGCTATGGAAAATACCTCCCGCTTTGAAGT----------ATTCATTCACAAATAATATG--GT--------CACCTTGTGCTAC------TA
gi|14 : -A-TAGACC---ATAA----TCTTAAAAAATCAA-AC--AG-T-T-AGG-GTT-GTATAC-CAGA-AA-A-AATATCTTTTATGGGGTTTTTGGTGCAGA
gi|15 : gtatatT----------ATTTATTCATAATTACTGTGATAT--------ATCCTTGTGCTAC------TATT-AAAA-G--AAACCGGAAT-GAAAATCTTGATAAACCAC-AC--AG-T-T-AGtccta
gi|16 : aTATG--GT--------GTCCTTG-GCAAC------TATT-AAAA-G-TAATCCTGAATAAAA--TCTTCAAAAATCAC-AC--AT-T-T-TGG-ATT-GTATAC-A
gi|17 : ATG--AT--------ATCCATGCGCTAC------TAT---AAA-A-T-TACCAGAAT-AAAAATCTTCAAAAATCCC-ACAAA--T-T--GG-GTT-TTAT
gi|18 : ACGTAATGTCATAATGACATATTCAT-----------T----CAT---TAATACCGCTTGCTATGATGT----------At
gi|19 : acgCTATG--AT--------ATTCTTGCGCTAC------AATA-GAAA-A-TAGACCGGAATA
gi|2 : CGTAACGTCATA-TGCCATTTTCAT-----------T----CTT---AGATATCTCGCACTAAGACATACATGTTTGAATTCGTTCATAAATACTATG--CT--------ATCATATAGCTAC------AATA-AAAG-GTTAGATT---AT---AAATCTT---AAATCA--GT--A--A-C-AGT-GTT-CTATGC-A
gi|3 : tatatacccgacactggtgtctgtgtaatttgactgttgtggacttttcatgctatacactcttcgcgtgttaatcctcgctttatagAACGCTATA-TAACATTTTCAT-----------T----AA----AAA-AACTCTCGCTGTTACGT----------TTTCATTCATAAATACTATG--AA--------ATTCTTGTGCTAT------T-TA-AATA-A-TAGACAGG---AAAAAATCTTTAAAACTCAT-AC--A--T-TCAGG-ATT-GTTTGC-
gi|4 : ACGTCACGTCATA-TGACGTATTCAT-----------T----AAT---AAATACCTTGTGATATGAC------------ACCTAT--GTTGATACTATG--AT--------ATATATGTGCTACTACAAGTATA-AAAATA-TAGACGGGAATAAAAG---TTT-AAAATTAT-AA--A--TAT-CGT-GTT-ATATGC-AATA-AA-ATG-TATATTTCGTGCGATTTTTGGTGnnnnnnnnnnagatggacaattccgtcccgaggggttagcactagggacggaatttttctatccggatcgagaactctataaatactatgaa
gi|5 : tcacatgcttaacataacctcctagctcaatgACGTAACGTTACA-TGACGTATTCAT-----------T----CAT---CGATGCCGTGCGCTATGACGT----------ATTGAT-----AGTTCTATG--AT--------ATCCATGCGCTAC------CATG-AAAACA-TAGTTTGG-ATTAAAAATCTTAAAATATCAC-ATA-A--A-T-AGG-GTT-GTA--------------------TTTCATGGGATTTTCGTTGCGG
gi|6 : tcgtcatataACGTAACGCTATA-TAACGTATTCAT-----------T----CAA---ACATAT---------TGAGGT----------ATTCG-------ATATTGTG--AT--------ATCCTTGCGCCAT------TATATAAAA-C-TAGACCGGAA-AAACAATCTTATCAAGTCAC-AC--G--T-C-AAGTGTT-gtggaatattcaccccctcgcgataactgttttg
gi|7 : tcacgcgcttatcacacactcctcgtgttataTAACGCCATA-AGAAGT-TGCAT-----------T----CGT---AA-TACTTCGCGCAACGGCGT----------GTTCATTCATAAATATCAGT--AT--------ATCCTTGTACTAC------TTTG-AAAA-A-TAGAATGAAAT-AAAAATCTTTATAAA-CAC-AC---------AGA-ATT-GTATGC-AAGA-AA-ATG-TAT-TTTCATGGGGTTttcggtacggataaaaattccgtctgtcgctttcttgg
gi|8 : tggtaATGTAATACCATA-CGACATATTCATAAATTCATAATT----CAT---AAAAACCTTGCTCTATGACAT----------ATTCATTTATTGATATTATA--ATGATTTTCAATCCTTGCGCT
gi|9 : ttacactgacactcctagtactatgTATG--AT--------ATTCTTTCACTAC------TCTA-GAAA-A-TAGTCTGGAATAAAAAA-ATTTAAAAATCACAAC--A--T-T-ACA-GTT-GCATGC-AAGATAA-A-G-TACCTTTCATGAGGTTTTTGttt
blockSeqs : A A AAATTCATAAT GAGC GGA C T ACATGTTTGA TG G AT GATTTTCA TACAAG AT GT G A A A AGT A C T G G T T AA C
blockSeqs : . A . . . T G . TC A . . . A TA G A A . AAA . . . . . . . TG C
blockSeqs : . T . . . G G . TC A . . . A CA T A A . AG . . . . . . . TG C
blockSeqs : . T . . . T A . TC A . . . T A G A G . AT . . . . . . . G A
blockSeqs : . A . . . G G . TC A . . . T G T A C . AG . . . . . . . G C
blockSeqs : . A . . . G G . TC T . . . T A A A C . AG . . . . . . . G .
blockSeqs : . A . . . G G . TT A . . . A G G A T . AT . . . . . . . . .
blockSeqs : . A . . . G G . . T . . . A G G T T . AA . . . . . . .
blockSeqs : . . . . . . A . . . . . . A A G A A . A . . . . .
blockSeqs : . . . . . . . A A G A A . A . . . . .
blockSeqs : . . . . G A G . T . A . . . . .
blockSeqs : . . . G C G . T . G . . . .
blockSeqs : . . . A A G . . . A . . . .
blockSeqs : . . . . A . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons : *********** AG*** G**
originalCons : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-AC--A--T-T-AGG-GTT-GTATGC-AAGA-AA-A-G-TATCTTTCATGGGGTTTTCGGTGCGGA
finalCons : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATG--AT--------ATCCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCAC-ACAG---T-T-AGG-GTT-GTATGC-AAGA-AA-AG--TATCTTTCATGGGGTTTTCGGTGCGGA
Alignments
lowQualScore : 33333333333 1111111111 1
lowQualScore : 4 1 22222222222 8888 777 1 1 4444444444 22 1 88888888 33 777777 44 777 1 0 5 2 6 3333 7 1 2 2 3 4 4 4 0 2
lowQualScore : . . ........... .... ... . . .......... .. . ........ .. ...... .. ... . . . . . .... . . . . . . . . . .
lowQualScore : 0 1 00000000000 5555 000 6 2 6666666666 66 5 55555555 22 222222 11 888 4 1 8 5 2 9999 1 1 9 9 3 4 4 4 0 5
consensus : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATGAT--------AT--CCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCA--C-ACAGTTAGG-GTT-GTATGC-AAG-A-AA-A-GTATCTTTCATGGGGTTTTCGGTGCGGA
Reference ( family-1581 ) : ACGTAACGTCATA-TGACGTATTCAT-----------T----CAT---AAATACCTCGCGCTATGACGT----------ATTCATTCATAAATACTATGAT--------AT--CCTTGCGCTAC------TATA-AAAA-A-TAGACCGGAATAAAAAATCTTNAAAAATCA--C-ACAGTTAGG-GTT-GTATGC-AAG-A-AA-A-GTATCTTTCATGGGGTTTTCGGTGCGGA
gi|1 : ATGTAACGTCATA-TGACATATTCATCGATGAT----T----CAT---AAATACCTCATGCTATGACAT----------ATTCGTTCATAAATACTATGAT--------GT--CATTGCGCTAC------AATA-AAAA-G-TAGACTATAATAAAAAATCTTGAAAAATCA--C-ACA-TTAAG-ATT-GTATGC-AAA-A-AA-A-ATATCTTTCAAAGGGTTTTCAGTG
gi|10 : TACGAT--------AT--TCTTGCACTTC------TACA-TAAA-A-TAGACCGGAATAAAAATCTTTAAAAAATCA--C-AAAGTTACA-GTT-GTATGCGAAA-A-GA-A-GTATCCTTCATGGtcagaacagttatacatcggtatggaatttttcatcattatggtcaataaccctttaagtttgataaaa
gi|11 : ATGGT--------AT--ATTTCCGCTAC------CATA-AAAA---TAAAGCGGAATA-AAAATCTT-AAAAAGCA--T-ACATTTTGA-GTTGGTATAC-AAG-A-AATA-GTATC-TTCATGGGTTTTtt
gi|12 : TGACTT----------ATTCATTGATGATTACTATGGT--------AT--CCTTGC-------------TT-AAAA-G-TAGACATGAAT-AAAAATCTGAAAAAATCA--T-GCAGTTTAT-GAT-GAATGC-AAG-A-AA-
gi|13 : ACGTAACGTCAT--TCATACAATCCT-----------TGAGCTATGGAAAATACCTCCCGCTTTGAAGT----------ATTCATTCACAAATAATATGGT--------CA--CCTTGTGCTAC------TA
gi|14 : -A-TAGACC---ATAA----TCTTAAAAAATCA--A-ACAGTTAGG-GTT-GTATAC-CAGAA-AA-A-ATATCTTTTATGGGGTTTTTGGTGCAGA
gi|15 : gtatatT----------ATTTATTCATAATTACTGTGAT--------ATATCCTTGTGCTAC------TATT-AAAA-G--AAACCGGAATGAAAA-TCTTGATAAACCA--C-ACAGTTAGtccta
gi|16 : aTATGGT--------GT--CCTTG-GCAAC------TATT-AAAA-G-TAATCCTGAATAAAA--TCTTCAAAAATCA--C-ACATTTTGG-ATT-GTATAC-A
gi|17 : ATGAT--------AT--CCATGCGCTAC------TAT---AAA-A-T-TACCAGAAT-AAAAATCTTCAAAAATCC--C-ACAAATTGG-GTT-TTAT
gi|18 : ACGTAATGTCATAATGACATATTCAT-----------T----CAT---TAATACCGCTTGCTATGATGT----------At
gi|19 : acgCTATGAT--------AT--TCTTGCGCTAC------AATA-GAAA-A-TAGACCGGAATA
gi|2 : CGTAACGTCATA-TGCCATTTTCAT-----------T----CTT---AGATATCTCGCACTAAGACATACATGTTTGAATTCGTTCATAAATACTATGCT--------AT--CATATAGCTAC------AATA-AAAG-GTTAGATT---AT---AAATCTT---AAATCAGTA-ACAGT-----GTT-CTATGC-A
gi|3 : tatatacccgacactggtgtctgtgtaatttgactgttgtggacttttcatgctatacactcttcgcgtgttaatcctcgctttatagAACGCTATA-TAACATTTTCAT-----------T----AA----AAA-AACTCTCGCTGTTACGT----------TTTCATTCATAAATACTATGAA--------AT--TCTTGTGCTAT------T-TA-AATA-A-TAGACAGG---AAAAAATCTTTAAAACTCA--T-ACATTCAGG-ATT-GTTTGC-
gi|4 : ACGTCACGTCATA-TGACGTATTCAT-----------T----AAT---AAATACCTTGTGATATGAC------------ACCTAT--GTTGATACTATGAT--------AT--ATATGTGCTACTACAAGTATA-AAAATA-TAGACGGGAATAAAAG---TTT-AAAATTA--T-AAATATCGT-GTT-ATATGC-AAT-A-AA-ATGTATATTTCGTGCGATTTTTGGTGnnnnnnnnnnagatggacaattccgtcccgaggggttagcactagggacggaatttttctatccggatcgagaactctataaatactatgaa
gi|5 : tcacatgcttaacataacctcctagctcaatgACGTAACGTTACA-TGACGTATTCAT-----------T----CAT---CGATGCCGTGCGCTATGACGT----------ATTGAT-----AGTTCTATGAT--------AT--CCATGCGCTAC------CATG-AAAACA-TAGTTTGG-ATTAAAAATCTTAAAATATCA--C-ATAAATAGG-GTT-GTA--------------------TTTCATGGGATTTTCGTTGCGG
gi|6 : tcgtcatataACGTAACGCTATA-TAACGTATTCAT-----------T----CAA---ACATAT---------TGAGGT----------ATTCG-------ATATTGTGAT--------AT--CCTTGCGCCAT------TATATAAAA-C-TAGACCGGAA-AAACAATCTTATCAAGTCA--C-AC-GTCAAGTGTT-gtggaatattcaccccctcgcgataactgttttg
gi|7 : tcacgcgcttatcacacactcctcgtgttataTAACGCCATA-AGAAGT-TGCAT-----------T----CGT---AA-TACTTCGCGCAACGGCGT----------GTTCATTCATAAATATCAGTAT--------AT--CCTTGTACTAC------TTTG-AAAA-A-TAGAATGAAAT-AAAAATCTTTATAAA-CA--C-AC----AGA-ATT-GTATGC-AAG-A-AA-ATGTAT-TTTCATGGGGTTttcggtacggataaaaattccgtctgtcgctttcttgg
gi|8 : tggtaATGTAATACCATA-CGACATATTCATAAATTCATAATT----CAT---AAAAACCTTGCTCTATGACAT----------ATTCATTTATTGATATTATAATGATTTTCAAT--CCTTGCGCT
gi|9 : ttacactgacactcctagtactatgTATGAT--------AT--TCTTTCACTAC------TCTA-GAAA-A-TAGTCTGGAATAAAAAA-ATTTAAAAATCA--CAACA-TTACA-GTT-GCATGC-AAG-ATAA-A-GTACCTTTCATGAGGTTTTTGttt