lowQualScore : 111 55555555555555555 222222222222222222222222 1111 1 1111 222222222222222222222222222 2222222 111111 1 1 333333333 11111 333333333333333333333333333333 11111 555555555555555555555555 111 1111 1 11 3333333 333333333333333333333333333 22 1 111 22222222 2222222 1 11111
lowQualScore : 4 44 000 44 666 1 00000000000000000 2 2 1 666666666666666666666666 44 666 444 1 5555 999 1 1 4 7777 1 3 3 3 2 8888 99999 555555555555555555555555555 55 5555555 1 4 3 666666 55 1 3 4 3 111111111 66666 999999 00 5 444444444444444444444444444444 1 2 66666 0 999999999999999999999999 2 4 33 9 555 99 1 000 6666 3 7 3 3 1 3 3 7777 99999 3 3 66 3 77 66 0 7 6 9 888 44 4444444 77777 7 3 555555555555555555555555555 88888 3 9 00 1 111 0 6 3 33333333 3333333 999999 555 2 9 2 5 33333 0 3 2 3 3 1 7
lowQualScore : . .. ... .. ... . ................. . . . ........................ .. ... ... . .... ... . . . .... . . . . . .... ..... ........................... .. ....... . . . ...... .. . . . . ......... ..... ...... .. . .............................. . . ..... . ........................ . . .. . ... .. . ... .... . . . . . . . .... ..... . . .. . .. .. . . . . ... .. ....... ..... . . ........................... ..... . . .. . ... . . . ........ ....... ...... ... . . . . ..... . . . . . . .
lowQualScore : 1 66 222 66 444 4 99999999999999999 2 4 4 555555555555555555555555 88 222 999 6 5555 333 2 5 0 2222 8 3 8 3 9 5555 11111 333333333333333333333333333 55 2222222 2 3 6 888888 33 7 6 5 6 333333333 77777 666666 88 8 000000000000000000000000000000 7 1 44444 8 222222222222222222222222 9 0 44 4 444 22 2 000 3333 6 3 6 6 4 6 5 7777 11111 6 6 55 6 88 77 5 3 7 2 333 33 0000000 55555 3 6 999999999999999999999999999 33333 3 3 99 0 222 8 2 3 88888888 2222222 666666 888 7 0 2 9 88888 6 7 9 1 1 4 0
consensus : CAGGAATCCAACATGGATTTATAAGAAT--A-ANTTGGATTTC--TGTA---GCA-----------------AGAATAATTCGGATTTCTGTAGCAATA-CGGATTTATAAGA---ACG-AAATG-AAAAAT-AAA-A-GCTTGCATAA--AAAAA--TGCAGAACACGGGGCAATTTATACCGCCGC-TCACCTGACCCATTTGTCAAA-CGTCTC-----ATTA-GCCA-C--G-G-GCAGG-CGNATC--C--GCATACATT-GCACCGTCATGGCAA-T-TAACTAAAACGAAGAANCTGTCACAGCTAA-TGGCT-GG-CAATA--CGGACG-----CGTGATGCATTTA------GCTAAAAATAG-----AC-------------GTNG-----GATGTAGGCACG---GCCGGCAA------------TT---------ANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTATTGCG---AAAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTAT----ATAAACGA-----C-C-AA-NT-TTACCGACACGGGGAGTCGGTT-TTCG-ANATAC--TTTTAGGCCNCGTCA-G-T---TTTGACGGAACTAAATTAAAACTGCG-C-G--------------------T-CG---TGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGAT--TACTTTAAGAAC-TGAAACAACTTTAG----GAATT-T-----ATAA------TGGTGAT---AACTTTAGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCCACCCTCATTA
Reference ( gi|3 ) : CAGAAATCCAACATGGATTTATAAGAAT--A-ATTTGGATTTC--TGTA---GCA-----------------AGAATAATTTGGATTTCTGTAGCAATA-CGGATTTATAAGA---ATA-AAATG-AAAAAT-AAA-A-GCTTGCATAA--AAAAA--TGCAGAATATATGGCAATTTGTACCGCCGC-TCACTTGATCTATTTATCAAA-CAACTC-----ATTA-GTCA-C--G-G-ACAGG-CGTATC--C--ACATACATC-GCTCCGCCATAGCAA-T-AAACTAAAACAAGGAACCTGTCACAGCTAA-TGG-T-GG-TAATA--CGGACG-----CGTGATACATTTA------GCTAAAAATAA-----AC-------------GTAG-----GATGTAGGCACG---ACCAGCAA------------TA---------ATCAAG-CAATAAGCAATTAATAAG--GGTTGTT--TTATTGCG---AAAG---CAA-C-T-T-GACAGCCGTGTAAGGCTAACGATTT----ATAAACGA-----C-C-AA-AT-TTACTAACACGAGGAGTCGGTT-TTCG-ACATAC--TTTTAGGCTACGTCA-GTT---TTTGACGGAACTAAATTAAAACTGCG-C-G--------------------C-CA---TGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGAT--AACTTTTAGAAC-TGAAACAACTCGAG----GAATT-A-----ATAA------TGGTGAT---AACTTTAGAAATTGAACTTACAGTACCTTTAGAAATTGTATTTGTGGTAACTCTGATTTAGACTTGTAATAACTTTAGATTGAACTTATAATAAACATTTGTAATCTCAACTAA-TTTGTGAA-C-TTGTATTTCCAACCTCATTA
gi|4 : CAGGAATCCAACATGAATTTATA-------------------------------------------------AGAATCATTCGGATTTCTGTAGCAAGAATAGATTTATAAGG---AAG-AAATG-AAAAAT-AAATA-GCTTGCATAA--AAAAAAATGCAAAGTACACAATAATTTGTACCGTCGC-CCACTTATCCTATTTAGCAAA-CAACTC-----ATTT-GTCA-C--G-G-ACATG-GGTATT--C--GCATATATC-GCTCCACCATAGCAA-T-TAACTAAAACAAG-AATCTGTCACAACTAA-TGG-T-GA-GCATG--CGGACG-----CGTGATACAGTTA------GCTAACAATAG-----AC-------------GTAG-----GATATGGGCACG---GCTGGCAA------------TT---------AACAAG-CAATAAGCAATACATAAA--GGTTGTT--TTATTGCG---AAAA---TAA-C-T-T-GACAGCCGTGCGAGGCTAACGGTAT----ATAAACGA-----C-C-AA-AT-TTACAAACCCCGGGAGTCGGTT-TTCG-AGATAC--TTTGA-ACTATGTCA-AAA---TTTGACGGAACTAAATTAAAACTACG-C-GCACTAAATTAAAACTGTGCTC-CG---TGAACTTT-----T-ATGTTAAGAAATAGGAACTTGTGAT--TATTTATAGAAC-TGAAGCAACTTTAG----GAATT-------GTAA------TGGTGAT---AACTTTAGAAACTAAACTTATAGTA-CTTTAGAAACTGTACTTGTAGTAACTTTGACTTAGA--TG----AACT------------TGTAATAAACATTTATAATCTCAA--A---TTGTGAA-C-TTATATTTATACCCTCATT
gi|2 : aacaaagtCAGAAATCCAACATGGATTTATAAGAAT--A-ATTTGGATTTC--TGTA---GCATTCAGTATTGATTTATAAGGATGATTTGGATTTCTGTAGTA--------TTCAAAAAACGCACACAAATG-AAAAAT-AAA-AAGCTTGCATAA--AAAA---TACAGAGCACGGGGCAATT-ATACCACCGC-TCATATGACCAATTTGTCAAA-TGTCTC-----ATTA----A-C--T-A-GCGAG-C---TCG-C--ACATAC--T-GCACCGTCATGGGAA-T-TAGC--GAGCGGAGAGGTTGTCACAGCTGA-TGG-T-GGACAAT----GGATG-----CGTGATGCATCTA------GTTAAAA-TAG-----AC-------------GTTG-----GTTGTAAGCACA---GCCAACAA------------TT---------AACAAG-CAATTAGCAATTAATATG--GGTTGTT--TTATTGCG---AAAT---CAA-C-TCT-GACAGCTGTGTAAAACTAACG-TAT----ATAAACGA-----C-C-AA-AT-TTACCGACACAGGGAGTCGGAAATTCG-ATATAC--CTTTAGAC-----CA-GTTCACTTTGACGGAACTCAATTAGA-CTGCG-C-G--------------------T-CG---TGAACATT-----T-AAGTTAAGAAATAAAA-CTTGTGAT--TACTTTAAGAAC-TAAAACAACTTTAG----AAATT-T-----ATAA------ACGTGAT---AACTTTAGAAATTGAACTTACAGTAGCTTAAGAAATTGGATTCGTCATAACTTTGAATTAGACTTTTAATGATTTTAGATTGAATGAATAATATATATTTGTAATCTCAGCTAA-TTTGTGAAGT-TTGTATTTCTACCCTCATT
gi|6 : acaaagtCAGGAATCCAATATGGATTTATTAGAAT--A-TATTAGGTTTC--TGTA---GTA-----------------GT--TAATT-GGATTTCTGTAGTAGTA--GTAGTTA----------A-AAACG-TACA-C-AAA-----TT---TAT--AAAAC--CTCAGCGAATACGACAATTTATATCGCCGC-TTACTTGATCCATTTGTCAAA-CGTCTC-----ATTA-GCTA-C--G-GCACAGG-TGGACC--C--GTGCACATTTGCACCGCCATGGCAA-T-TAAC-AAAACACAGAATCTGTCACAGCCAA-TAT-TTGA-CAAT----GGACG-----CGTGATGCATTTA------GCTAAAAATAG-----AC-------------GTGG-----GTCATAGGCACA---GCCTACAA------------TT---------AGCAAAACAATTAGCATTTAATAAG--GGTTGTT--TTATTGCG---AATA---CAA-C-T-TTGACAGCCGTGTAAGACTAACGGTAT----ATAAACGA-----C-C-AA-AT-TTACCGACACAGGGAGTCGGAAACTCG-ATATAC--CTTTAGGCCACGTCA--TT---TTTGACGGAACT-----------GCG-C-G--------------------T-CG---TAAACATT-----T-AAGTTAAGAAATAAAA-CTTGATAT--TACTTTAAGAAC-TGAAACAACTTT-T----GAATT-T-----GTAA------TGGTGAT---ATATTTAGGAATTGAACTTGCAGTAACTTTAGAAATTGGATTCGTCGTAACTTTGGATTAATCTTTTAATGGCTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTTATGAA-C-TTGTATTTCTACCCTCA
gi|5 : agtCAGGAATTCAATATGGATGTATAAGAAT--A-GATTGGATTTC--TGTG---GTA-----------------AAAAAAA----------CGT----ACA-CAAA-TTATAAAA---A----------------AAA-A-ACTCCCAT----AAAAA--TTCA-AACACGGGACAA-TTATACCACCGC-TCACCTGACCCATTTGTCAAA-TGTCTTATTAGATTA-GCTA-CA-A-G-GCAGG-CAAGTC--C--GTACATATT-GCACCGTCATTACAA-T-TA--TAAAACGGAGAAATTGTCACAGCTAA-TGG-T-GG---ATA--CGGGCG-----CGTGATGCACTTA------GC--AAAGTAG-----AT-------------GTCGTTCTTACTATAAAAACG----TTGGCG--------------C---------ATCTAA-CAATCAGCAATTAATTAA--AGTTG----TTA--ACGATCAAAA---CAA-CTT-T-GACAGCCGTGTAAAACCAACGGAAT----ATAAAGGA-----C-CTGT-TT-TTACCTGTACGGGGACTCGGAT-TTTG-ATATAC--TTTTAGGCCTCGTTACGTT---GT---CGAAACTAAATTAGAA---TA-A-G--------------------T-CATGGTGAACATT-----T-AAGTT-AGAAAT-TAAACTTGTGAT--TACTTAAGGAAT-TGTGGCAACTTTAG----GAATT-GAATTTATAA------TAGTAAT----ACTTTAGAAACTGAGCTTACAGAAACTTTAGAAATTGGACTCGTTATAAC------TTAGATTTGTAATGACTTTAGATTGAATTTCTAATAAACATTTATAATCTCAGCTAA-CCTGTGAA-T-TTGTATTTCCACCCTCATTA
gi|7 : taacaaagtCAGGAATCCAATATGGATTTATAAGAAT--A-ATCGGGATTTC--TGTA---GCATTCAATATGGATTTATAAGAATGATTTGGATTTCTGTAGTA-TA-AAAA---A-AAGT---ACACAAATG-CAAAAC-AAA-A-GCTTGCATAA--AAAA-----CAGAACACGGGGCAATT-ATACCACCGC-TCATATGACCCATTTGTCAAA-TGCCTC-----ATTA-GCTAGC--G-----AGATCGTA--------CATAC--T-GCACCGTTATGGCAA-T-TAACGAGAGGAGAGA--TTGTCATAGCCAAATGG-T-GAATAAT----GGGTG-----CGTGATGCACGAA------GCTAAAA-------------------------T-G-----GATGTCGTTCTT---GCTGGTAA------------TGCGGAGGTGCATCTAA-CAATTAGCAATTAATAAA--GGTTGTTAATAATC------AAAA---CAT-C-T-T-GACAGCCGTGTGAAACGAACGGTAT----ATAATAGA-----C-C-CA-TTCTCGCCTGTACTGGGAGTCGGTT-TTCG-AGACCG--ATTTAGGCCTCGTCACG------TTGACGAAACTAAATTAGAA---TA-A-G--------------------T-CG---TGAGCATT-----T-AATTT-AGAAAT-TAAACCTGTAAT--TACTTTAAG-AT-TGTGACAACTTAAGGATTGAATT-T-----ATAA------TAGTGAT---AACTTTAGAAACTGGA------------------------TTCGTCATAACTTTGAATAAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTAGTGAA-C-TTGTATCTCTA
gi|17 : aagtCAGGAATCCAACATGGATTTATAAGAAT--A-ATTTGGATTTC--TGTA---GCA-----------------AGACTTATTTGGATTTCTGTAGCAATA-CTGATTGATAAGA---ATG-AAATG-AAGAAT-AAA-A-GCTTGCAT-A--AAAAA--TGCAGAATATACAGCAATTTGTACCGCCGC-TCACT
gi|20 : acaaagtAGGAATCCAACATGGATTTATAAG-AC--A-A-------TTC--TGTA---GCA-----------------A
gi|21 : caaagtaGGAATCCAATACAGATTTATAAGAGT--A-GATTGGATTTC--Ttacggatttataagaatgaaatgaataattaaagctt
gi|9 : aaaagcataatgtaacatagttgGATTTATAAGAAC--A-GATTGGATTTC--TGTA---aataaaacaaa
gi|16 : aacaaagttggaaataaaATTTATAAGAGT--A-AATTGAATTTC--TATA---ATA-----------------Aattaacatacataaattaaaaaactcccataaaaatacagaacatgggacattatactgctcacctgacccatttaccaaacgtctcattacaacaaggcaggcggattcgtacatataatgaccatcatggcaaataataaaatggagaaattgtcacagctaatggctgataatgggcgcgtggtgcacttagcaaagtagatgtcgttcttactagtaaaacgtgggcgcatctaacaattggcaatttataaaaattgtttatgatcaaaacaatttgacagccatttgagactaacggtatataagagacccatttttacctatacagggacttagatttcgaatactttttaggcctcgttactttgtcgaaactaaattagattacgccgttgtgaatatataagttagaaattgaactttagattgaatttataataaacatctataatctcagctaacttatgaatttgcatttcaacccttattacgctacacatgcgaccaggcctataataaaatagtgtaatagtcacttattggtggaattg
gi|15 : ATAAGGAC--ATATTTGGACAACAGTGTATTTATA-----------------AGAGTAGATTGGATTTCTATAATAA------AT---TAAAA---CTT-ACAC---AAATT-AAA-A-ACTCGCAT----AAAAA--TACCAAATACGGGACA----GTA-CGCCGCTTCACCTGACTCATTTATCAAA-CGTCTC-----ATTA-ACAA-CA-A-G-GTAGG-CGAATactaaaatcttacacaaattaatactccaaacggaacaacacgaaacacagaatacgcttcatctgacatatgtatcaaaaggtcacattaaccaccaagtgggcgaaagagtgaccactacgccaattaataaaacaagaaaaacagtcacatcaaa
gi|8 : AGGAATCAA-ATATGGATTTA--T--------A-----------------AGAATAATTCGGATTTATGTAGCAATA-CGGATTTATAAGA---ATG-AAATGAAAAAATAAAA-A-GCTTGCAT-A--AAAAA--TGCAGAACACGGGACAA-TTACACCACCAC-TCATATGACCCATTTGTCAAA-TGTCTC-----ATTA----A-C--T-A-GCGAG-C---TCG-C--ACATAC--T-GCACTGTAATGACAA-T-ttgaactttgatgaaactaaattacgaaatactgaat
gi|9 : acaaagtcA-----------------AGAACAGATTGGATTTCTGTA----------ATTAACATAC---ATA-AATTA-AAAAA---------CTCCCATAA--AAA----TACAGAACATGGGACA--TTATACTGC----TCACCTGACCCATTTACCAAA-CGTCTC-----ATTACAACA-A--G-G--CAGG-CGGATT--CGTACATATAAT-GA-CCATCATGGCAAAT-AA--TAAAATGGAGAAATTGTCACAGCTAA-TGGCT-GA-TAAT----GGGCG-----CGTGGTGCACTTA------GC--AAAGTAG-----ATGTCGTTCTTACTAGTAA-----AACGTGGGCGC-----------------------------------ATCTAA-CAATTGGCAATTTATAAA--AATTG-T--TTATGATC---AAAA---CAA-T-T-T-GACAGCCATTTGAGACTAACGGTAT----ATAAGAGA-----C-C-CATTT-TTACCTATACAGGGACTTAGAT-TTCG-A-ATACT-TTTTAGGCCTCGTTA---C---TTTGTCGAAACTAAATT-AGATTACGCC-G--------------------T-TG---TGAATATA-----T-AAGTT-AGAAAT-TGAACTTTAGATTGAA--TTTATAAT---AAACATCTtagcgcaaccgcgtgatgcatttagctaaaaatagacgctggttgtaggcacaaccaacaattcacaaacaattaataagggttgttttattgcgaaaaaaacaacttgacagccgtgtaaggctaacggtgtataaacgaccaaatttaccgacacaggaagtcggttttcgagatgcctttttaggccacgtcagttttgacggaactaaattaaactgcgcgtcgtgaacatttaagtgcagaaataacacttgtgattactttaagaactgaaacaactttaggaatttgtaatggtgataacttagaaattgaatttactgtaactttagaaatcggacttgttgtacttttaataactttagattgaacttataataaacatatgtaatatcaactaatttgtgaacttgtatttcccacctc
gi|20 : aacaaagttggaaataaagatttatTTCTGTAGCAATA-CGGATTTATAAGA---ATG-AAATG-AATAAT-TAA-A-GCTTataatctcagctaacttatgaatttgcatttcaacccttattacgctacacatgcgaccaggcctataataaaatagtgtaatagtcacttattggtggaattg
gi|1 : caaagtaaggaatccaacatggatttataagacaaAACT-AAA-A-TCTTACACACCCAAACA--TG--GAACATA--G-AAT----ACCGCT---TCATCTGACCCATTTATCAAAACGTCTC-----ATTA-ACCA-C--AAG-GTATG-CGAATTTGC--ACATGTAGA-GA-CCGTTGTGGCAA-T-TAA-TAAAACAAGCAAATTGTCACCGCAAA-TGACT-AG-TAATGGGCGGACGATTCGCGTAGTA-ATT--------GCTGGAA-TAA-----A--------------GTAGA----GATGT---CACCCTTACTAGTAAAACATGGGAGCGTC---------ATCTAG-CAATGAGCAATTAA--AGCTAGATGTT----AATGAGC--AAAA---CAAGT-T-T-GAAAGCCGTATGGGG--AA--ATTTGTATATAAGAAA-----CTC-AT-TT-TTACCAATGCGGGGAGTCGATT-TACGAATGTA---TTTTAAGC--CTTTG-ATT---TT-------ACTAAATT-AGACTATGAC-G--------------------CTTG---TGATCAGT-----T-AAGTT-AGAAAT-TAAGCTTGTGAT--AACATTTGAAAT-T--------------------TT-A-----AT-A------CG-----------TTAAGGAATTGGACTTGTTATACATTT-GAA-TTGGACTTGTGGTAACTTTAGTTTGAACTTATAA-------------------TAATAAACGTCAGTAATCTCAGTTTA-CTTGTG
gi|10 : aataaagttaggaatctaatatagattggatttctataatcA--AAAAA--TGCAGAATATACGGCAATTTGTACCGCCGC-TCACTTGATCTATTTATCAAA-CAACTC-----ATTA-GTCA-C--G-G-ACAGG-CGTATC--T--GCATACATC-GCTCCGCCATAGCCA-T-TAACTAAAACAAGGAATCTGTCACAGCTAA-TGG-T-GG-ACATA--AGGACG-----CGTGATACATTTA------GCTAAAAATAG-----AC-------------ATTT-----GATGTAGGCACG---ACCAGCAA------------TT---------AACAAA-CAATAAGCAATTAATAAG--GTTTGTT--TTATTGCG---AAAA---TAA-C-T-T-GACAGCCGTGTAAGGATAACGATAT----ATAAACGT-----T-C-AA-AT-TTACTAACACGAGGAGTCGGTT-TTCG-ACATAC--TTTTAGGCTACGTCC-G-T---TTTGACGGAACTAAATTAAAACTGCG-C-G--------------------C-CA---TGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGAT--TACTTTTAGAAC-TGAAACAACTCGAG----GAATT-T-----GTAA------CGGTGAT---AACTTTAGAAATTGAACTTACAGTAACTTTAGAAATTGTACTTGTGGTAACTTTGAATTAGACTTGTAATAACTTAAGATTGTACTTATAATAAATATTTGTAATCTCAACTAA-TTTGTTAG-C-ATGTATTTCCTACCTttttatactcattacgctactttggccatttaccttcctttgttatagagtacgataactttaaaaatgtgcttatgggtcctcttatgtattccacgtcttatttaaataattaatacagtaagataattggtgactaattagttactgtggagaaaataaaatttctagtatagaaaacgccccataaaataaccaaaattcaaagcaaattaacaacacaattcaaaaaaatttaaattttattaaaattagtttttaggacattaaataagtaataatagttcagcaaaattcaaagcacaaatatatacatagaagttatcaaatcaaaagtcaatttacagagtacatttcaaagcaaatgatttacaaaagagatgttt
gi|12 : TACCGCT---TCATCTGACCTATTTATCAAAACGTCTC-----ATTA-ACCA-CAAG-G-A-AGG-TGAATTTTC--ACATGTAGT-GA-CCGTTTTGGCAA-TTAGAC--AAACAAA----TTATCAACGCTAT-TGACT-GG-TAACAGGCGGACGACTGGCGTAGTA-ATGTA--------CAGATATCATCCTTACTA-----------GTAA-----AACATGGG----------AGCA-------------------------TCTAA-CAATTAGCAAATAATAAA--AGTTATTAATGAT--CT---AAA----CAA-CAT-T-GACAGCCGTATGGGG--AA--ATCT----GTATACAAGAAACC-C-AT-TT-TTACCAATGCG-TAAGTCTGTT-TTCGAACATG----TTTAGG
gi|11 : ATGGTAA-T-TAACTAAA-CAAAGAATCTGTCGCAGCTAA-TGG-T-GGACAA-A--CGGACG-----CGTGATACATTCA------GCTAAATATAG-----AC-------------ATGG-----GTTGTGGGCACG---ACCAGCAA------------TT---------AACAAG-CAATTAGTAATTAATAAG--GTTTGTT--TTATTGCG---AAAA---TAA-C-C-C-CACAGCCGTGTGAGACTAACGATAT----ATAAACGA-----C-C-AA-AT-TTACCAACACGAAGAGTCGGTT-TTCG-AGATAC--TTTTAGGCCAAGTCA-G-T---TTTGACGGAACTAAATTAAAACTGCG-C-G--------------------C-CG---TGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGAT--TACTTTAAGAAC-TGAAACAACTTTAC----GAATT-T-----GTAA------TAGTGAC---AACTTTAGAAATTGAACTTACAGTAACTTTAGAAATTGTACATGTGGTAACTTTGTATTAGACTTGTAATAACTTTAGATTGAATTTATAATAAACACTTGTAATCTCAACAAA-TTTGTGAA-C-TTGTATTTTCAACCTCAgctcgtatattccctcaaacaaaattggtttacgtcgcttgtgagcagt
gi|19 : TAAAACAAACAAACTTTCACCACTAA-TGGCT-GA-CA--A--CGGGCG-----GGTGATACATGTAATAATTGCT-AAAACAA-----A--------------GTA------GATGTA-TCCTT---ACTAGTAA------------AACGTGGGAGCACCTAG-CAATTAGCAATTAATAA---AGTTGTT--
gi|8 : aaCG-----CGTGATGCATTTA------GCTAAAAATAG-----AC-------------GCTG-----GTTGTAGGCACA---ACCAACAA------------T-----------TCA------CAAACAATTAATAAG--GGTTGTT--TTATTGCG---AAAAAAACAA-C-T-T-GACAGCCGTGTAAGGCTAACGGTGT----ATAAACGA-----C-C-AA-AT-TTACCGACACAGGAAGTCGGTT-TTCG-AGATGCCTTTTTAGGCCACGTCA-G-T---TTTGACGGAACTAAATT-AAACTGCG-C-G--------------------T-CG---TGAACATT-----T-AAGTGCAGAAAT-AACACTTGTGAT--TACTTTAAGAAC-TGAAACAACTTTAG----GAATT-T-----GTAA------TGGTGAT---AAC-TTAGAAATTGAATTTACTGTAACTTTAGAAATCGGACTTGTTGT-------------ACTTTTAATAACTTTAGATTGAACTTATAATAAACATATGTAATATCAACTAA-TTTGTGAA-C-TTGTATTTCCCACCTCgatgatgaaaact
gi|13 : acaaagtcaggaatcaaatatggatttataagaataattcggatttatgtagcaatacggatttataagaatgaaatgaaaaaataaaaagcttgcataaaaaatgcagaacacgggacaattacaccaccactcatatgacccatttgtcaaatgtctcattaactagcgagctcgcacatactgcactgtaatgacaattagcgcaacTCG-ATATAC--TTTTAGACCTCATCA---C---TTTGATGAAACTCAATTAGA-TTGCG-CCG--------------------T-CG---TGAACATTAGAAGTGAAGTTA-GAAATTAAA-CTTGTGAC--AAATTTAGGAAT-TGAA-----------------TT-T-----ATAA------TAGTGAT---TACTT-AGAAATTTAACTTAAGATAACTTTAGAAATTGGACTCGTTAGAACTTTAAGTTAGACTTGTAATAACTTTAGATTAAATTTATAATAAACATTTATAATCTCAGCTAA-TTTGTGAA-TATTGTATTTCAACCCTCA
gi|14 : CAGT-----T-AAGTTA-GAAATTAAA-CTTGTGAC--AACTCT
gi|14 : cgcgtagtagtAGAAATTGAA-CTCGTAAT--AA-TTTTAGAAAGTGTGATAACTTTGG----AAATTGA-----AT--------TTGTGAT---AACTTTAGAAATCGAACTTACAATACGTTTAGAAATCGGCCTTGTGATAACTTTAAATTGGACTTGTGATTACTTTAGATTGAACTTATAATAAACATCAGTAACCTCAGTTAA-CGTGTGAA-C-TTGTGTTTagaaattgaactcgtaataattttagaaagtgtgataactttggaaattgaatttgtgataactttagaaatcgaacttacaatacgtttagaaatcggccttgtgataactttaaattggacttgtgattactttagattgaacttataataaacatcagtaacctcagttaacgtgtgaacttgtgtttt
gi|18 : cgcgtagtagtcagttaagttagaaattaaacttgtgacaactctAG----CAATT-A-----ATAAAGTTGTTGATGATGAAAACTTTAGAAATTGGACTTt
gi|18 : tCTTTAGAAATTGGACTTGTTATAACTTTGAATTAGACTTGTGATGATTTTAGATTGAATTTATAATAAACATCAATAATCTCAGTTAA-CTTGTGAA-C-TTGTGTTTgttataactttgaattagacttgtgatgattttagattgaatttataataaacatcaataatctcagttaacttgtgaacttgtgttttattatcattacgc
gi|9 : tagcaattaataaagttgttgatgatgaaaaAACTTTAGATTGAATTTATAATAAACATCTATAATCTCAGCTAA-CTTATGAA-T-TTGCATTTCAACCCTTATTAtattatcattacgc
gi|22 : aacaaagttggaaataaagatttataagaacagattggatttctgtaattaacatacataaattaaaaaactcccataaaaatacagaacatgggacattatactgctcacctgacccatttaccaaacgtctcattacaacaaggcaggcggattcgtacatataatgaccatcatggcaaataataaaatggagaaattgtcacagctaatggctgataatgggcgcgtggtgcacttagcaaagtagatgtcgttcttactagtaaaacgtgggcgcatctaacaattggcaatttataaaaattgtttatgatcaaaacaatttgacagccatttgagactaacggtatataagagacccatttttacctatacagggacttagatttcgaatactttttaggcctcgttactttgtcgaaactaaattagattacgccgttgtgaatatataagttagaaattgACATCAGTAATCTCAATTAACTTTGTGAA-C-TTGTGTTTcgctacacatgcgaccaggcctataataaaatagtgtaatagtcacttattggtggaattg
Alignments
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 111111 22222222 1 111 1111111 3333333333333333333333333333333333333333 11111111111111111111 1111 22222222222222222222 111
lowQualScore : 4 3 4 3 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999 44 0000000 555 888 3 3 333333 88 2 3 5 0 3 1 6 999999 0 44444444 0 1 44 0 55 1 3 55 55 0 3 1 3 2 44 888 77777 888888 6666 5 0000000 4 9999999999999999999999999999999999999999 99999999999999999999 1 1 3 44 88 0 3 1 3 555 555 3 3 3 6 0 3 77 3 3 4 3 6 3 7 77 1 3 8888 1 88 9 3 88888888888888888888 77777 3 55 222 44 0 2 2 7777 88888 1 3 3 6666 1 2 2 2 0 0 666 0 2 2 2 555
lowQualScore : . . . . . ............................................................................... .. ....... ... ... . . ...... .. . . . . . . . ...... . ........ . . .. . .. . . .. .. . . . . . .. ... ..... ...... .... . ....... . ........................................ .................... . . . .. .. . . . . ... ... . . . . . . .. . . . . . . . .. . . .... . .. . . .................... ..... . .. ... .. . . . .... ..... . . . .... . . . . . . ... . . . . ...
lowQualScore : 0 6 5 6 7 4444444444444444444444444444444444444444444444444444444444444444444444444444444 22 8888888 888 333 3 3 111111 33 9 2 2 8 1 6 7 222222 8 22222222 4 0 66 2 00 6 6 00 77 4 5 0 3 0 55 222 77777 888888 5555 8 0000000 0 6666666666666666666666666666666666666666 22222222222222222222 0 0 1 22 55 4 1 4 1 444 444 3 3 3 7 4 3 77 3 3 2 7 7 1 0 33 0 3 2222 2 33 2 1 11111111111111111111 77777 1 77 666 88 1 9 4 1111 33333 3 7 3 1111 0 9 9 0 1 1 111 8 7 7 7 222
consensus : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGCA-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAAC------G-----A-------AATG-AA-------AA---AT--AAA-A-GCTTGCAT--AA--AAAAATGCAGAACACGGGGCAATTTATACCGCCGC-TCACCTGACCCATTTATCAAA-CGTCTCATTAG-----CCAC-G-G-GCAGGCGAA--TTCG--CACATATC-GC-ACCGTCATGGCAATTAACTAAAACGAAGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNG-------------GAT--------GT--------------AGGCACGGCCG-GCAAT---------TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACGGGGAGTCGGTT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-N-AAACTTGTGATT-ACTTTA-AGAACTGAAACAACTTTAG----GAATT-----TGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACT----CGTNGTAACT-T-TGAATTAGACTTGTAAT--GACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
Reference ( family-1560 ) : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGCA-----------------AGAATAATTCGGATTTCTGTAGCAATACGGATTTATAAGAAC------G-----A-------AATG-AA-------AA---AT--AAA-A-GCTTGCAT--AA--AAAAATGCAGAACACGGGGCAATTTATACCGCCGC-TCACCTGACCCATTTGTCAAA-CGTCTCATTAG-----CCAC-G-G-GCAGGCGNA--TCCG--CATACATT-GC-ACCGTCATGGCAATTAACTAAAACGAAGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNG-------------GAT--------GT--------------AGGCACGGCCG-GCAAT---------TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-NT-TT-ACCGACACGGGGAGTCGGTT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-A-AAACTTGTGATT-ACTTTA-AGAACTGAAACAACTTTAG----GAATT-----TATAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACT----CGTNGTAACT-T-TGAATTAGACTTGTAAT--GACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
gi|1 : -------AA---CT--AAA-A-TCTTACAC--ACCCAAACATG--GAACATAGA-------ATACCGCT---TCATCTGACCCATTTATCAAAACGTCTCATTAA-----CCAC-AAG-GTATGCGAA--TTTG--CACATGTA-GAGACCGTTGTGGCAATTAA-TAAAACAAGCAAATTGTCACCGCAAA-TGACTAGTAATGGGCGGACGATTCGCGTAGTA-ATT--------GCTG----GAA-TA-------AA-GTAGA------------GAT--------GTCACCCTTACTAGTAAAACATGG--GAGCG-T---------CATCTAG-CAATGAGCAATTAA--AGCTAGATGTT----AA-TGAGCA---AAA---CAAGT-T-T-GAAAGCCGTATGGGGAAATTTGTATATAAGAAACTCAT-TT-TT-ACCAATGCGGGGAGTCGATT-TACGAATGTA---TTTTAAGCCT--TT-G-A-TTTT------ACTAAATT-AGACTATGAC-GC-------------------TTGTGATCAGT-----T-AAGTT-AGAAAT-T-AAGCTTGTGAT-----------------AACA--TTT-G----AAATT-----T-TAAT-------ACGTTAAGGAATTGGACTTGTTATACATTT--GAATTGGACT----TGTGGTAACT-T-TAGTTTGAACTTATA---------------------ATAATAAACGTCAGTAATCTCAG-----TTT----A-C-TTGTGTTT-T-ATACTCATTA
gi|10 : aataaagttaggaatctaatatagattggatttctataatcA--AAAAATGCAGAATATACGGCAATTTGTACCGCCGC-TCACTTGATCTATTTATCAAA-CAACTCATTAG-----TCAC-G-G-ACAGGCGTA--TCTG--CATACATC-GC-TCCGCCATAGCCATTAACTAAAACAAGGAATCTGTCACAGCTAA-TGG-TGGACATA--AGGACG-----CGTGATACATTTA------GCTA----AAAATA-------GACATTT-------------GAT--------GT--------------AGGCACGACCA-GCAAT---------TAACAAA-CAATAAGCAATTAATAAG--GTTTGTT--TTAT-TGCG-A---AAA---TAA-C-T-T-GACAGCCGTGTAAGGATAACGATATATAAACGTT-CAA-AT-TT-ACTAACACGAGGAGTCGGTT-TTCG-ACATAC--TTTTAGGCTACGTC-C-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAA-AAACTTGTGATT-ACTTTT-AGAACTGAAACAACTCGAG----GAATT-----TGTAACGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACT----TGTGGTAACT-T-TGAATTAGACTTGTAAT--AACTTAAGATTGTACTTATAATAAATATTTGTAATCTCAACTAA-TTTGTTAG-C-ATGTATTTCCTACCcgctactttggccatttaccttcctttgttatagagtacgataactttaaaaatgtgcttatgggtcctcttatgtattccacgtcttatttaaataattaatacagtaagataattggtgactaattagttactgtggagaaaataaaatttctagtatagaaaacgccccataaaataaccaaaattcaaagcaaattaacaacacaattcaaaaaaatttaaattttattaaaattagtttttaggacattaaataagtaataatagttcagcaaaattcaaagcacaaatatatacatagaagttatcaaatcaaaagtcaatttacagagtacatttcaaagcaaatgatttacaaaagagatgttt
gi|11 : ATGGTAATTAACTAAA-CAAAGAATCTGTCGCAGCTAA-TGGTGGACAA-A--CGGACG-----CGTGATACATTCA------GCTA----AATATA-------GACATGG-------------GTT--------GT--------------GGGCACGACCA-GCAAT---------TAACAAG-CAATTAGTAATTAATAAG--GTTTGTT--TTAT-TGCG-A---AAA---TAA-C-C-C-CACAGCCGTGTGAGACTAACGATATATAAACGAC-CAA-AT-TT-ACCAACACGAAGAGTCGGTT-TTCG-AGATAC--TTTTAGGCCAAGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCGTGAACATT-----T-AAGTTAAGAAAT-A-AAACTTGTGATT-ACTTTA-AGAACTGAAACAACTTTAC----GAATT-----TGTAATAGTGACAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACA----TGTGGTAACT-T-TGTATTAGACTTGTAAT--AACTTTAGATTGAATTTATAATAAACACTTGTAATCTCAACAAA-TTTGTGAA-C-TTGTATTTTC-AACCTCAt
gi|12 : TACCGCT---TCATCTGACCTATTTATCAAAACGTCTCATTAA-----CCACAA-G-GAAGGTGAATTTTCA--CATGTAGT-G--ACCGTTTTGGCAATT-----AGACAAACAAATTATCAACGCTAT-TGACTGGTAACAGGCGGACG-----ACTGGCGTAGTAA------TGTA----CAGATATCATCCTTAC-TAG-------------TA-------------------------AAACATGG--GAGCA-------------TCTAA-CAATTAGCAAATAATAAA--AGTTATTAATGATCT--------AAA---CAA-CAT-T-GACAGCCGTATGGGGAAATCTGTATACAAGAAAC-CCATTT-TT-ACCAATGC-GTAAGTCTGTT-TTCG-A-ACAT--GTTTAGGGCTCGT
gi|13 : TCG-ATATAC--TTTTAGACCTCATC-A---CTTTGATGAAACTCAATTAGA-TTGCG-CCG--------------------TCGTGAACATTAGAAGTGAAGTTA-GAAAT-T-AAACTTGTGACA-AATTTA-GGAATTGAA-----------------TT-----TATAATAGTGATTACTT--AGAAATTTAACTTAAGATAACTTTAGAAATTGGACT----CGTTAGAACT-T-TAAGTTAGACTTGTAAT--AACTTTAGATTAAATTTATAATAAACATTTATAATCTCAGCTAA-TTTGTGAA-TATTGTATTTCA-ACCCTCAatattccctcaaacaaaattggtttacgtcgcttgtgagcagt
gi|14 : CG-C-G--------------------TAGTAGTCAGT-----T-AAGTTA-GAAAT-T-AAACTTGTGACA-ACTCTA-
gi|14 : AGAAAT-T-GAACTCGTAATA-ATTTTA-GAAAGTGTGATAACTTTGG----AAATT-----GA-ATTTGTGATAACTTT-AGAAATCGAACTTACAATACGTTTAGAAATCGGCCT----TGTGATAACT-T-TAAATTGGACTTGTGAT--TACTTTAGATTGAACTTATAATAAACATCAGTAACCTCAGTTAA-CGTGTGAA-C-TTGTGTTTgaaattgaactcgtaataattttagaaagtgtgataactttggaaattgaatttgtgataactttagaaatcgaacttacaatacgtttagaaatcggccttgtgataactttaaattggacttgtgattactttagattgaacttataataaacatcagtaacctcagttaacgtgtgaacttgtgtttt
gi|15 : cgcgtagtagtcagttaagttagaaattaaacttgtgacaactctCAACAGTGTATTTATAAGAGT-AGAT-TGGATTTCTAT-----------------------AATAA-----ATT--------AAAAC----TTAC----AC------------A-------AATT-AA-------AA---A----------CTCGCAT------AAAAATACCAAATACGGGACAG--TA---CGCCGCTTCACCTGACTCATTTATCAAA-CGTCTCATTAA-----CAACAA-G-GTAGGCGAA--Tt
gi|17 : ataaggacatatttggaCAGGAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGCA-----------------AGACTTATTTGGATTTCTGTAGCAATACTGATTGATAAGAAT------G-----A-------AATG-AA-------GA---AT--AAA-A-GCTTGCAT---A--AAAAATGCAGAATATACAGCAATTTGTACCGCCGC-TCACttgaactttgatgaaactaaattacgaaatactgaat
gi|18 : acaaagtAACTTTAGAAATTGGACT----TGTTATAACT-T-TGAATTAGACTTGTGAT--GATTTTAGATTGAATTTATAATAAACATCAATAATCTCAGTTAA-CTTGTGAA-C-TTGTGTTT-T-ATTATCATTAt
gi|19 : tagcaattaataaagttgttgatgatgaaTAAAACAAACAAACTTTCACCACTAA-TGGCTGACA--A--CGGGCG-----GGTGATACATGTAATAATTGCTAAAACAAAGTA-------GATGT----------------ATCCTTACTAGT--------------AAA-ACG--TG-G-GAG---------CACCTAG-CAATTAGCAATTAATAA---AGTTG-T--TGAT-GATG-A---AAA---Ccgc
gi|2 : aaCAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGCATTCAGTATTGATTTATAAGGATGATTTGGATTTCTGTAGTA-------TTCA-AAAAAC------GCACACA-------AATG-AA-------AA---AT--AAA-AAGCTTGCAT--AA--AAAA-TACAGAGCACGGGGCAATT-ATACCACCGC-TCATATGACCAATTTGTCAAA-TGTCTCATTAA-----CTA----------GCGAG--CTCG--CACATACT-GC-ACCGTCATGGGAATTAGC--GAGCGGAGAGGTTGTCACAGCTGA-TGGTGGACAAT----GGATG-----CGTGATGCATCTA------GTTA----AAA-TA-------GACGTTG-------------GTT--------GT--------------AAGCACAGCCA-ACAAT---------TAACAAG-CAATTAGCAATTAATATG--GGTTGTT--TTAT-TGCG-A---AAT---CAA-C-TCT-GACAGCTGTGTAAAACTAACG-TATATAAACGAC-CAA-AT-TT-ACCGACACAGGGAGTCGGAAATTCG-ATATAC--CTTTAGACCAGTTC-A---CTTTGACGGAACTCAATTAGA-CTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-A-AAACTTGTGATT-ACTTTA-AGAACTAAAACAACTTTAG----AAATT-----TATAAACGTGATAACTTT-AGAAATTGAACTTACAGTAGCTTAAGAAATTGGATT----CGTCATAACT-T-TGAATTAGACTTTTAAT--GATTTTAGATTGAATGAATAATATATATTTGTAATCTCAGCTAA-TTTGTGAAGT-TTGTATTTCT-ACCCTCATTt
gi|20 : acaaagtAGGAATCCAACA-TGGATTTATAAG-AC-AA--------TTCTGTA-----------------------------------------GCAATACGGATTTATAAGAAT------G-----A-------AATG-AA-------TA---AT--TAA-A-GCTT
gi|21 : caaagtaGGAATCCAATA-CAGATTTATAAGAGT-AGAT-TGGATTTCT
gi|22 : aaaagcataatgtaacatagttgACATCAGTAATCTCAATTAACTTTGTGAA-C-TTGTGTTTaataaaacaaa
gi|3 : CAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGCA-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAAT------A-----A-------AATG-AA-------AA---AT--AAA-A-GCTTGCAT--AA--AAAAATGCAGAATATATGGCAATTTGTACCGCCGC-TCACTTGATCTATTTATCAAA-CAACTCATTAG-----TCAC-G-G-ACAGGCGTA--TCCA--CATACATC-GC-TCCGCCATAGCAATAAACTAAAACAAGGAACCTGTCACAGCTAA-TGG-TGGTAATA--CGGACG-----CGTGATACATTTA------GCTA----AAAATA-------AACGTAG-------------GAT--------GT--------------AGGCACGACCA-GCAAT---------AATCAAG-CAATAAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAG---CAA-C-T-T-GACAGCCGTGTAAGGCTAACGATTTATAAACGAC-CAA-AT-TT-ACTAACACGAGGAGTCGGTT-TTCG-ACATAC--TTTTAGGCTACGTC-A-GTTTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAA-AAACTTGTGATA-ACTTTT-AGAACTGAAACAACTCGAG----GAATT-----AATAATGGTGATAACTTT-AGAAATTGAACTTACAGTACCTTTAGAAATTGTATT----TGTGGTAACT-C-TGATTTAGACTTGTAAT--AACTTTAGATTGAACTTATAATAAACATTTGTAATCTCAACTAA-TTTGTGAA-C-TTGTATTTCC-AACCTCATTAtatgcttat
gi|4 : CAGGAATCCAACA-TGAATTTATAAGAAT-CATT-CGGATTTCTGTAGCA-----------------AGAATA-----------------------GATTTATAAGGAA------G-----A-------AATG-AA-------AA---AT--AAATA-GCTTGCATAAAA--AAAAATGCAAAGTACACAATAATTTGTACCGTCGC-CCACTTATCCTATTTAGCAAA-CAACTCATTTG-----TCAC-G-G-ACATGGGTA--TTCG--CATATATC-GC-TCCACCATAGCAATTAACTAAAAC-AAGAATCTGTCACAACTAA-TGGTGAGC-ATG--CGGACG-----CGTGATACAGTTA------GCTA----ACAATA-------GACGTAG-------------GAT--------AT--------------GGGCACGGCTG-GCAAT---------TAACAAG-CAATAAGCAATACATAAA--GGTTGTT--TTAT-TGCG-A---AAA---TAA-C-T-T-GACAGCCGTGCGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACAAACCCCGGGAGTCGGTT-TTCG-AGATAC--TTTGA-ACTATGTCAA-A-ATTTGACGGAACTAAATTAAAACTACG-C-GCACTAAATTAAAACTGTGCTCCGTGAACTTT-----T-ATGTTAAGAAAT-AGGAACTTGTGATT-A-TTTATAGAACTGAAGCAACTTTAG----GAA-T-----TGTAATGGTGATAACTTT-AGAAACTAAACTTATAGT-ACTTTAGAAACTGTACT----TGTAGTAACT-T-TGACTTAGA--------------------TGAACTTGTAATAAACATTTATAATCTCA---AA--TTGTGAA-C-TTATATTTAT-ACCCTCATT
gi|5 : aacaaagtCAGGAATTCAATA-TGGATGTATAAGAAT-AGAT-TGGATTTCTGTGGTA-----------------AAAAAAAC----------GTA----CACAAATT------------------------------ATA-AA-------AA---A----AA-A-ACTCCCAT--AA--AAA--TTCA-AACACGGGACAATT-ATACCACCGC-TCACCTGACCCATTTGTCAAA-TGTCTTATTAGATTAGCTAC-AAG-GCAGGCAAG--TCCG--TACATATT-GC-ACCGTCATTACAATTA--TAAAACGGAGAAATTGTCACAGCTAA-TGG-TGG--ATA--CGGGCG-----CGTGATGCACTTA------GC------AAAGTA-------GATGTCGTTCTT--------ACT--------AT--------------AAAAACG-TTG-GCG-----------CATCTAA-CAATCAGCAATTAATTAA--AGTTGTT----A---ACG-ATCAAAA---CAA-C-T-TTGACAGCCGTGTAAAACCAACGGAATATAAAGGAC-CTG-TT-TTTACCTGTACGGGGACTCGGAT-TTTG-ATATAC--TTTTAGGCCTCGTT-ACG-TTGT--CGAAACTAAATTAGAA-TAAGTC-A--------------------TGGTGAACATT-----T-AAGTTA-GAAAT-T-AAACTTGTGATT-ACTTAA-GGAATTGTGGCAACTTTAG----GAATTGAATTTATAATAGTAATA-CTTT-AGAAACTGAGCTTACAGAAACTTTAGAAATTGGACT----CGTTATAACT-T-------AGATTTGTAAT--GACTTTAGATTGAATTTCTAATAAACATTTATAATCTCAGCTAA-CCTGTGAA-T-TTGTATTTCC-ACCCTCATTA
gi|6 : taacaaagtCAGGAATCCAATA-TGGATTTATTAGAAT-ATAT-TAGGTTTCTGTAGTA-----------------GT--TAATT-GGATTTCTGTAGTAGTA-GTAGTTA--AAAAC------GT----A-------CAC---A-------AATTTAT--AAA-A-CCT--CA-------------GC-GAATACGA--CAATTTATATCGCCGC-TTACTTGATCCATTTGTCAAA-CGTCTCATTAG-----CTAC-G-GCACAGGTGGA--CCCG--TGCACATTTGC-ACCGCCATGGCAATTAAC-AAAACACAGAATCTGTCACAGCCAA-TATTTGACAAT----GGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTGG-------------GTC--------AT--------------AGGCACAGCCT-ACAAT---------TAGCAAAACAATTAGCATTTAATAAG--GGTTGTT--TTAT-TGCG-A---ATA---CAA-C-T-TTGACAGCCGTGTAAGACTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACAGGGAGTCGGAAACTCG-ATATAC--CTTTAGGCCACGTC-A-T-TTTTGACGGAACT-----------GCG-C-G--------------------TCGTAAACATT-----T-AAGTTAAGAAAT-A-AAACTTGATATT-ACTTTA-AGAACTGAAACAACTTT-T----GAATT-----TGTAATGGTGATATATTT-AGGAATTGAACTTGCAGTAACTTTAGAAATTGGATT----CGTCGTAACT-T-TGGATTAATCTTTTAAT--GGCTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTTATGAA-C-TTGTATTTCT-ACCCTCA
gi|7 : agtCAGGAATCCAATA-TGGATTTATAAGAAT-AATC-GGGATTTCTGTAGCATTCAATATGGATTTATAAGAATGATTTGGATTTCTGTAGTA-TAAAAA---A-AAGTAC------AC----A-------AATG-CA-------AA---AC--AAA-A-GCTTGCAT--AA--AAAA---CAGAACACGGGGCAATT-ATACCACCGC-TCATATGACCCATTTGTCAAA-TGCCTCATTAG-----CTA----------GCGAG--ATCG--TACATACT-GC-ACCGTTATGGCAATTAACGAGA--GGAGAGATTGTCATAGCCAAATGG-TG--AATAA-TGGGTG-----CGTGATGCACGAA------GCTA----AAA---------------TG-------------GAT--------GT--------------CGTTCTTGCTG-GTAATGCGGAGGTGCATCTAA-CAATTAGCAATTAATAAA--GGTTGTTAATAAT-C----A---AAA---CAT-C-T-T-GACAGCCGTGTGAAACGAACGGTATATAATAGAC-CCA-TTCTC-GCCTGTACTGGGAGTCGGTT-TTCG-AGACCG--ATTTAGGCCTCGTC-ACG---TTGACGAAACTAAATTAGAA---TA-A-G--------------------TCGTGAGCATT-----T-AATTT-AGAAAT-T-AAACCTGTAATT-ACTTTA-AG-ATTGTGACAACTTAAGGATTGAATT-----TATAATAGTGA-------------------------TAACTTTAGAAACTGGATT----CGTCATAACT-T-TGAATAAGACTTGTAAT--GACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTAGTGAA-C-TTGTATCTCT-
gi|8 : aagtAGGAATCAAATATGGATTTAT-----A-----------------AGAATAATTCGGATTTATGTAGCAATACGGATTTATAAGAAT------G-----A-------AATGAAA-------AA---ATA-AAA-A-GCTTGCAT---A--AAAAATGCAGAACACGGGACAA-TTACACCACCAC-TCATATGACCCATTTGTCAAA-TGTCTCATTAA-----CTA----------GCGAG--CTCG--CACATACT-GC-ACTGTAATGACAATTAGC
gi|8 : acaaagtcCG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGCTG-------------GTT--------GT--------------AGGCACAACCA-ACAAT---------TCACAAA-CAATTA-------ATAAG--GGTTGTT--TTAT-TGCG-A---AAAAAACAA-C-T-T-GACAGCCGTGTAAGGCTAACGGTGTATAAACGAC-CAA-AT-TT-ACCGACACAGGAAGTCGGTT-TTCG-AGATGCCTTTTTAGGCCACGTC-A-G-TTTTGACGGAACTAAATTAAA-CTGCG-C-G--------------------TCGTGAACATT-----T-AAGTGCAGAAAT-A-ACACTTGTGATT-ACTTTA-AGAACTGAAACAACTTTAG----GAATT-----TGTAATGGTGATAAC-TT-AGAAATTGAATTTACTGTAACTTTAGAAATCGGACT----TGTTGT-ACT-T-T------------TAAT--AACTTTAGATTGAACTTATAATAAACATATGTAATATCAACTAA-TTTGTGAA-C-TTGTATTTCC-CACCTCgcaaccgcgtgatgcatttagctaaaaatagacgctggttgtaggcacaaccaacaattcacaaacaattaataagggttgttttattgcgaaaaaaacaacttgacagccgtgtaaggctaacggtgtataaacgaccaaatttaccgacacaggaagtcggttttcgagatgcctttttaggccacgtcagttttgacggaactaaattaaactgcgcgtcgtgaacatttaagtgcagaaataacacttgtgattactttaagaactgaaacaactttaggaatttgtaatggtgataacttagaaattgaatttactgtaactttagaaatcggacttgttgtacttttaataactttagattgaacttataataaacatatgtaatatcaactaatttgtgaacttgtatttcccacctc
gi|9 : acaaagtcaggaatcaaatatggatttataagaataattcggatttatgtagcaatacggatttataagaatgaaatgaaaaaataaaaagcttgcataaaaaatgcagaacacgggacaattacaccaccactcatatgacccatttgtcaaatgtctcattaactagcgagctcgcacatactgcactgtaatgacaattagcgcaacAATAAAGATTTATAAGAACAGATTGG-----ATTTCTGTAATT-AACATACATAA---ATTAAAA-A-ACTCCCAT--AA--AAA--TACAGAACATGGGACA--TTATACTGC----TCACCTGACCCATTTACCAAA-CGTCTCATTA------CAACAA-G-GCAGGCGGA--TTCGTACATATAAT-G--ACCATCATGGCAAATAA-TAAAATGGAGAAATTGTCACAGCTAA-TGGCTGATAAT----GGGCG-----CGTGGTGCACTTA------GC------AAAGTA-------GATGTCGTTCTTACTAGTAAAAC--------GT--------------GGGCGC---------------------ATCTAA-CAATTGGCAATTTATAAA--AATTG-T--TTAT-GATC-A---AAA---CAA-T-T-T-GACAGCCATTTGAGACTAACGGTATATAAGAGAC-CCATTT-TT-ACCTATACAGGGACTTAGAT-TTCG-A-ATACT-TTTTAGGCCTCGTT-A---CTTTGTCGAAACTAAATT-AGATTACGCC-G--------------------TTGTGAATATA-----T-AAGTT-AGAAAT-T-GAACTTTAGATTGAATTTA-
gi|9 : aacaaagttggaAAATTAGATTACGCCGTTGTGAATATATAAGTTAGA-----AATTGAACTTTAGATTGAATTTATAATAAACATCTATAATCTCAGCTAA-CTTATGAA-T-TTGCATTTCA-ACCCTTATTAtaataaacatctataatctcagctaacttatgaatttgcatttcaacccttattacgctacacatgcgaccaggcctataataaaatagtgtaatagtcacttattggtggaattg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATTTATAAGAGTAAATTGAATTTCTATAATAAACTAAAATCTTACACAAATTAATACTCCAAACGGAACAACACGAAACACAGAATACGCTTCATCTGACATATGTATCAAAAGGTCACATTAACCACCAAGTGGGCGAAAGAGTGACCACTACGCCAATTAATAAAACAAGAAAAACAGTCACATCAAA
Alignments
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 1111 1111 1111111111 11111 222222222 1 111 1111111 3333333333333333333333333333333333333333 11111111111111111111 1111 22222222222222222222
lowQualScore : 4 3 555 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 55 3333333333 555 3333 3 0 0000 6666 3333333333 0 3 22222 2 3 2 0 3 3 3 888888 555555555 0 44 888 88 77 444 1 3 2 44 888 77777 888888 6666 2 0000000 4 9999999999999999999999999999999999999999 99999999999999999999 1 1 3 44 88 0 3 1 3 555 555 3 3 3 6 0 3 88 3 3 4 3 3 3 3 7 77 1 3 8888 5 44 9 3 88888888888888888888 77777 3 55 99 555 2 2 6666 0 555 555 4 77777 6 3 1 1 1 1 2 2 2 555
lowQualScore : . . ... . ...................................................................................... .. .......... ... .... . . .... .... .......... . . ..... . . . . . . . ...... ......... . .. ... .. .. ... . . . .. ... ..... ...... .... . ....... . ........................................ .................... . . . .. .. . . . . ... ... . . . . . . .. . . . . . . . . .. . . .... . .. . . .................... ..... . .. .. ... . . .... . ... ... . ..... . . . . . . . . . ...
lowQualScore : 0 3 999 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 5555555555 444 2222 1 2 1111 8888 5555555555 2 2 99999 2 6 9 7 1 1 1 999999 333333333 2 22 111 44 66 222 0 3 0 55 222 77777 888888 5555 0 0000000 0 6666666666666666666666666666666666666666 22222222222222222222 0 0 1 22 55 4 1 4 1 444 444 3 3 3 7 4 3 55 3 3 2 7 3 3 1 0 33 0 3 2222 2 22 2 1 11111111111111111111 77777 1 77 66 999 9 9 5555 8 444 444 2 77777 5 3 0 7 9 6 9 9 9 222
consensus : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCA---ATTTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTCATTAG-----CCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNG-------------GAT--------GT--------------AGGCACGGCCG-GCAAT---------TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
Reference ( family-1560 ) : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCA---ATTTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTCATTAG-----CCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNG-------------GAT--------GT--------------AGGCACGGCCG-GCAAT---------TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
gi|1 : ----------AA---C-T--AAA-ATCTTACACACCCAAACA--TG------------GAACATAGA----------ATACCGCT---TCATCTGACCCATTTATC-A-AAACGTCTCATTAA-----CCA-C-AAG-GTATGCGAATTTG--CACATGT--AGAGACCGTTGTGGCAATTAA-TAAAACAA-GCAAATTGTCACCGCAAA-TGACTAGTAATGGGCGGACGATTCGCGTAGTA-ATT--------GCTG----GAA-TA-------AA-GTAGA------------GAT--------GTCACCCTTACTAGTAAAACATGG--GAGCG-T---------CATCTAG-CAATGAGCAATTAA--AGCTAGATGTT----AA-TGAGCA---AAA---CAAGT-T-T-GAAAGCCGTATGGGGAAATTTGTATATAAGAAACTCAT-TT-TT-ACCAATGCGGGGAGTCGA-TT-TACGAATGTA---TTTTAAGCCT--TT-G-A-TTTT------ACTAAATT-AGACTATGAC-GC-------------------TTGTGATCAGT-----T-AAGTT-AGAAAT-TAAGCTTGTGAT-----------------------AA---CA--T---TT-GAAATT-----T-TAAT-------ACGTTAAGGAATTGGACTTGTTATACATTT--GAATTGGACTTGTGGTAACTTTAGTTTGAACTTATA-------------------ATAATAAACGTCAGTAATCTCAG-----TTT----A-C-TTGTGTTT-T-ATACTCATTA
gi|10 : aataaagttaggaatctaatatagattggatttctataatcA--AAAAA--TGC----------AGAATATACGGCA---ATTTGTACCGCCGC-TCACTTGATCTATTTATC-A-AA-CAACTCATTAG-----TCA-C-G-G-ACAGGCGTATCTG--CATACAT--CGC-TCCGCCATAGCCATTAACTAAAACAA-GGAATCTGTCACAGCTAA-TGG-TGGACATA--AGGACG-----CGTGATACATTTA------GCTA----AAAATA-------GACATTT-------------GAT--------GT--------------AGGCACGACCA-GCAAT---------TAACAAA-CAATAAGCAATTAATAAG--GTTTGTT--TTAT-TGCG-A---AAA---TAA-C-T-T-GACAGCCGTGTAAGGATAACGATATATAAACGTT-CAA-AT-TT-ACTAACACGAGGAGTCGG-TT-TTCG-ACATAC--TTTTAGGCTACGTC-C-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGATT--ACTT-TT-AGAA----CTGAAA---CAACT---CGAGGAATT-----TGTAACGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACTTGTGGTAACTTTGAATTAGACTTGTAATAACTTAAGATTGTACTTATAATAAATATTTGTAATCTCAACTAA-TTTGTTAG-C-ATGTATTTCCTACCcgctactttggccatttaccttcctttgttatagagtacgataactttaaaaatgtgcttatgggtcctcttatgtattccacgtcttatttaaataattaatacagtaagataattggtgactaattagttactgtggagaaaataaaatttctagtatagaaaacgccccataaaataaccaaaattcaaagcaaattaacaacacaattcaaaaaaatttaaattttattaaaattagtttttaggacattaaataagtaataatagttcagcaaaattcaaagcacaaatatatacatagaagttatcaaatcaaaagtcaatttacagagtacatttcaaagcaaatgatttacaaaagagatgttt
gi|11 : ATGGTAATTAACTAAA-CAA-AGAATCTGTCGCAGCTAA-TGGTGGACAA-A--CGGACG-----CGTGATACATTCA------GCTA----AATATA-------GACATGG-------------GTT--------GT--------------GGGCACGACCA-GCAAT---------TAACAAG-CAATTAGTAATTAATAAG--GTTTGTT--TTAT-TGCG-A---AAA---TAA-C-C-C-CACAGCCGTGTGAGACTAACGATATATAAACGAC-CAA-AT-TT-ACCAACACGAAGAGTCGG-TT-TTCG-AGATAC--TTTTAGGCCAAGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCGTGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTACGAATT-----TGTAATAGTGACAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACATGTGGTAACTTTGTATTAGACTTGTAATAACTTTAGATTGAATTTATAATAAACACTTGTAATCTCAACAAA-TTTGTGAA-C-TTGTATTTTC-AACCTCAt
gi|12 : TACCGCT---TCATCTGACCTATTTATCAA-AA-CGTCTCATTAA-----CCA-CAA-G-GAAGGTGAATTTT--CACATGT--AGTGACCGTTTTGGCAATT-----AGACAA-ACAAATTATCAACGCTAT-TGACTGGTAACAGGCGGACG-----ACTGGCGTAGTAA------TGTA----CAGATATCATCCTTAC-TAG-------------TA-------------------------AAACATGG--GAGCA-------------TCTAA-CAATTAGCAAATAATAAA--AGTTATTAATGATCT--------AAA---CAA-CAT-T-GACAGCCGTATGGGGAAATCTGTATACAAGAAAC-CCATTT-TT-ACCAATGC-GTAAGTCTG-TT-TTCG-A-ACAT--GTTTAGGGCTCGT
gi|13 : TCG-ATATAC--TTTTAGACCTCATC-A---CTTTGATGAAACTCAATTAGA-TTGCG-CCG--------------------TCGTGAACATTAGAAGTGAAGTTA-GAAAT-TAAACTTGTGACA--AATT-TA-GGAA----TTGAA-------------------TT-----TATAATAGTGATTACTT--AGAAATTTAACTTAAGATAACTTTAGAAATTGGACTCGTTAGAACTTTAAGTTAGACTTGTAATAACTTTAGATTAAATTTATAATAAACATTTATAATCTCAGCTAA-TTTGTGAA-TATTGTATTTCA-ACCCTCAatattccctcaaacaaaattggtttacgtcgcttgtgagcagt
gi|14 : CG-C-G--------------------TAGTAGTCAGT-----T-AAGTTA-GAAAT-TAAACTTGTGACA--ACTC-TA-
gi|14 : AGAAAT-TGAACTCGTAATA--ATTT-TA-GAAA----GTGTGA---TAACT---TT-GGAAAT-----TGAATTTGTGATAACTTT-AGAAATCGAACTTACAATACGTTTAGAAATCGGCCTTGTGATAACTTTAAATTGGACTTGTGATTACTTTAGATTGAACTTATAATAAACATCAGTAACCTCAGTTAA-CGTGTGAA-C-TTGTGTTTgaaattgaactcgtaataattttagaaagtgtgataactttggaaattgaatttgtgataactttagaaatcgaacttacaatacgtttagaaatcggccttgtgataactttaaattggacttgtgattactttagattgaacttataataaacatcagtaacctcagttaacgtgtgaacttgtgtttt
gi|15 : cgcgtagtagtcagttaagttagaaattaaacttgtgacaactctCAACAGTGTATTTATAAGAGT-AGAT-TGGATTTCTAT----------------------------------------AATAA-----ATT--------AAAAC----TTAC----AC------AAATT-AA----------AA---A----------CTCGCAT----AAAAA--TAC----------CAAATACGGGACA---G--TA---CGCCGCTTCACCTGACTCATTTATC-A-AA-CGTCTCATTAA-----CAA-CAA-G-GTAGGCGAATTTG--AACt
gi|16 : ataaggacatatttggaATTTATAAGAGTA-----AATTG-AATTTCTATAATAA---ACT--AAA-ATCTTACACAA--ATTAA--TACTCCAAACGGAACAACACGAAACACAGA---ATAC-GCT---TCATCTGACATATGTATC-AAAA-GGTCACATTAA-----CCACC-A-A-GTGGGCGAA---------AGAG--TG--ACCACTACGCCAATTAA-TAAAACAAGAAAAACAGTCACAtttgatgaaactaaattacgaaatactgaat
gi|17 : CAGGAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGC-----------------A-----------------AGACTTATTTGGATTTCTGTAGCAATACTGATTGATAAGAATG-----AAATG-AA----------GA---A-T--AAA-AGCTTGCAT-A--AAAAA--TGC----------AGAATATACAGCA---ATTTGTACCGCCGC-TCACtcaaa
gi|18 : acaaagtAACTTTAGAAATTGGACTTGTTATAACTTTGAATTAGACTTGTGATGATTTTAGATTGAATTTATAATAAACATCAATAATCTCAGTTAA-CTTGTGAA-C-TTGTGTTT-T-ATTATCATTAt
gi|19 : tagcaattaataaagttgttgatgatgaaTAAAACAA-ACAAACTTTCACCACTAA-TGGCTGACA--A--CGGGCG-----GGTGATACATGTAATAATTGCTAAAACAAAGTA-------GATGT----------------ATCCTTACTAGT--------------AAA-ACG--TG-G-GAG---------CACCTAG-CAATTAGCAATTAATAA---AGTTG-T--TGAT-GATG-A---AAA---Ccgc
gi|2 : aaCAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGCATTCAGTATTGATTTATA-----------------AGGATGATTTGGATTTCTGTAGT-------ATTCA-AAAAACGCACACAAATG-AA----------AA---A-TA-AAA-AGCTTGCAT-A--AAAAA--TAC----------AGAGCACGGGGCA---A-TTATACCACCGC-TCATATGACCAATTTGTC-A-AA-TGTCTCATTAA-----CTA-----------GCGAGCTCG--CACATAC--TGC-ACCGTCATGGGAATTAGC--GAGCGG-AGAGGTTGTCACAGCTGA-TGGTGGACAAT----GGATG-----CGTGATGCATCTA------GTT-----AAAATA-------GACGTTG-------------GTT--------GT--------------AAGCACAGCCA-ACAAT---------TAACAAG-CAATTAGCAATTAATATG--GGTTGTT--TTAT-TGCG-A---AAT---CAA-C-TCT-GACAGCTGTGTAAAACTAAC-GTATATAAACGAC-CAA-AT-TT-ACCGACACAGGGAGTCGGAAA-TTCG-ATATAC--CTTTAGACCAGTTC-A---CTTTGACGGAACTCAATT-AGACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGATT--ACTT-TA-AGAA----CTAAAA---CAACT---TTAGAAATT-----TATAAACGTGATAACTTT-AGAAATTGAACTTACAGTAGCTTAAGAAATTGGATTCGTCATAACTTTGAATTAGACTTTTAATGATTTTAGATTGAATGAATAATATATATTTGTAATCTCAGCTAA-TTTGTGAAGT-TTGTATTTCT-ACCCTCATTt
gi|20 : acaaagtAGGAATCCAACA-TGGATTTATAAG-AC-AA--------TTCTGTA----------------------------------------------------------GCAATACGGATTTATAAGAATG-----AAATG-AA----------TA---A-T--TAA-AGCTT
gi|21 : caaagtaGGAATCCAATA-CAGATTTATAAGAGT-AGAT-TGGATTTCT
gi|22 : aaaagcataatgtaacatagttgACATCAGTAATCTCAATTAACTTTGTGAA-C-TTGTGTTTaataaaacaaa
gi|3 : CAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAATA-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAATATATGGCA---ATTTGTACCGCCGC-TCACTTGATCTATTTATC-A-AA-CAACTCATTAG-----TCA-C-G-G-ACAGGCGTATCCA--CATACAT--CGC-TCCGCCATAGCAATAAACTAAAACAA-GGAACCTGTCACAGCTAA-TGG-TGGTAATA--CGGACG-----CGTGATACATTTA------GCTA----AAAATA-------AACGTAG-------------GAT--------GT--------------AGGCACGACCA-GCAAT---------AATCAAG-CAATAAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAG---CAA-C-T-T-GACAGCCGTGTAAGGCTAACGATTTATAAACGAC-CAA-AT-TT-ACTAACACGAGGAGTCGG-TT-TTCG-ACATAC--TTTTAGGCTACGTC-A-GTTTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGATA--ACTT-TT-AGAA----CTGAAA---CAACT---CGAGGAATT-----AATAATGGTGATAACTTT-AGAAATTGAACTTACAGTACCTTTAGAAATTGTATTTGTGGTAACTCTGATTTAGACTTGTAATAACTTTAGATTGAACTTATAATAAACATTTGTAATCTCAACTAA-TTTGTGAA-C-TTGTATTTCC-AACCTCATTAtatgcttat
gi|4 : CAGGAATCCAACA-TGAATTTATAAGAAT-CATT-CGGATTTCTGTAGC-----------------A-----------------AGAATA-----------------------GATTTATAAGGAAG-----AAATG-AA----------AA---A-T--AAATAGCTTGCATAA--AAAAAAATGC----------AAAGTACACAATA---ATTTGTACCGTCGC-CCACTTATCCTATTTAGC-A-AA-CAACTCATTTG-----TCA-C-G-G-ACATGGGTATTCG--CATATAT--CGC-TCCACCATAGCAATTAACTAAAAC-A-AGAATCTGTCACAACTAA-TGGTGAGCA-TG--CGGACG-----CGTGATACAGTTA------GCTA----ACAATA-------GACGTAG-------------GAT--------AT--------------GGGCACGGCTG-GCAAT---------TAACAAG-CAATAAGCAATACATAAA--GGTTGTT--TTAT-TGCG-A---AAA---TAA-C-T-T-GACAGCCGTGCGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACAAACCCCGGGAGTCGG-TT-TTCG-AGATAC--TTTGA-ACTATGTCAA-A-ATTTGACGGAACTAAATTAAAACTACG-C-GCACTAAATTAAAACTGTGCTCCGTGAACTTT-----T-ATGTTAAGAAATAGGAACTTGTGATT--A-TT-TATAGAA----CTGAAG---CAACT---TTAGGAA-T-----TGTAATGGTGATAACTTT-AGAAACTAAACTTATAGT-ACTTTAGAAACTGTACTTGTAGTAACTTTGACTTAGA------------------TGAACTTGTAATAAACATTTATAATCTCA---AA--TTGTGAA-C-TTATATTTAT-ACCCTCATT
gi|5 : aacaaagtCAGGAATTCAATA-TGGATGTATAAGAAT-AGAT-TGGATTTCTGTGGT-----------------A-----------------AAAAAAAC----------GTA----CACAAATT-----------------ATA-AA----------AA---A-----AA-AACTCCCATAA--AAA----TTC----------A-AACACGGGACA---ATT-ATACCACCGC-TCACCTGACCCATTTGTC-A-AA-TGTCTTATTAGATTAGCTA-C-AAG-GCAGGCAAGTCCG--TACATAT--TGC-ACCGTCATTACAATTA--TAAAACGG-AGAAATTGTCACAGCTAA-TGG-TGG--ATA--CGGGCG-----CGTGATGCACTTA------GC------AAAGTA-------GATGTCGTTCTT--------ACT--------AT--------------AAAAACG-TTG-GCG-----------CATCTAA-CAATCAGCAATTAATTAA--AGTTGTT----A---ACG-ATCAAAA---CAA-C-T-TTGACAGCCGTGTAAAACCAACGGAATATAAAGGAC-CTG-TT-TTTACCTGTACGGGGACTCGG-AT-TTTG-ATATAC--TTTTAGGCCTCGTT-ACG-TTGT--CGAAACTAAATTAGAA-TAAGTC-A--------------------TGGTGAACATT-----T-AAGTTA-GAAAT-TAAACTTGTGATT--ACTT-AA-GGAA----TTGTGG---CAACT---TTAGGAATTGAATTTATAATAGTAATA-CTTT-AGAAACTGAGCTTACAGAAACTTTAGAAATTGGACTCGTTATAACTT------AGATTTGTAATGACTTTAGATTGAATTTCTAATAAACATTTATAATCTCAGCTAA-CCTGTGAA-T-TTGTATTTCC-ACCCTCATTA
gi|6 : taacaaagtCAGGAATCCAATA-TGGATTTATTAGAAT-ATAT-TAGGTTTCTGTAGT-----------------A-----------------GT--TAATT-GGATTTCTGTAGTAGTA-GTAGTTA--AAAACGT----ACAC---A----------AATTTA-T--AAA-ACCT--CA-------------GC-----------GAATACGA--CA---ATTTATATCGCCGC-TTACTTGATCCATTTGTC-A-AA-CGTCTCATTAG-----CTA-C-G-GCACAGGTGGACCCGTGCACAT-T--TGC-ACCGCCATGGCAATTAAC-AAAACAC-AGAATCTGTCACAGCCAA-TATTTGACAAT----GGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTGG-------------GTC--------AT--------------AGGCACAGCCT-ACAAT---------TAGCAAAACAATTAGCATTTAATAAG--GGTTGTT--TTAT-TGCG-A---ATA---CAA-C-T-TTGACAGCCGTGTAAGACTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACAGGGAGTCGG-AAACTCG-ATATAC--CTTTAGGCCACGTC-A-T-TTTTGACGGAACT-----------GCG-C-G--------------------TCGTAAACATT-----T-AAGTTAAGAAAT-AAAACTTGATATT--ACTT-TA-AGAA----CTGAAA---CAACT---TT-TGAATT-----TGTAATGGTGATATATTT-AGGAATTGAACTTGCAGTAACTTTAGAAATTGGATTCGTCGTAACTTTGGATTAATCTTTTAATGGCTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTTATGAA-C-TTGTATTTCT-ACCCTCA
gi|7 : agtCAGGAATCCAATA-TGGATTTATAAGAAT-AATC-GGGATTTCTGTAGC-----------------ATTCAATATGGATTTATAAGAATGATTTGGATTTCTGTAGTA-TAAAAA---A-AAGTACAC----AAATG-CA----------AA---A-C--AAA-AGCTTGCATAA--AAAA-----C----------AGAACACGGGGCA---ATT-ATACCACCGC-TCATATGACCCATTTGTC-A-AA-TGCCTCATTAG-----CTA-----------GCGAGATCG--TACATAC--TGC-ACCGTTATGGCAATTAACGAGA--GG-AGAGATTGTCATAGCCAAATGG-TG--AATAA-TGGGTG-----CGTGATGCACGAA------GCTA----AAA---------------TG-------------GAT--------GT--------------CGTTCTTGCTG-GTAATGCGGAGGTGCATCTAA-CAATTAGCAATTAATAAA--GGTTGTTAATAAT-C----A---AAA---CAT-C-T-T-GACAGCCGTGTGAAACGAACGGTATATAATAGAC-CCA-TTCTC-GCCTGTACTGGGAGTCGG-TT-TTCG-AGACCG--ATTTAGGCCTCGTC-ACG---TTGACGAAACTAAATTAGAA---TA-A-G--------------------TCGTGAGCATT-----T-AATTT-AGAAAT-TAAACCTGTAATT--ACTT-TA-AG-A----TTGTGA---CAACT---TAAGGA--T-----TG-AAT--TTATAA---T-AG----TGA--------TAACTTTAGAAACTGGATTCGTCATAACTTTGAATAAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTAGTGAA-C-TTGTATCTCT-
gi|8 : aagtAGGAATCAAATATGGATTTAT----------------------A-----------------AGAATAATTCGGATTTATGTAGCAATACGGATTTATAAGAATG-----AAATGAAA----------AA---A-TA-AAA-AGCTTGCAT-A--AAAAA--TGC----------AGAACACGGGACA---A-TTACACCACCAC-TCATATGACCCATTTGTC-A-AA-TGTCTCATTAA-----CTA-----------GCGAGCTCG--CACATAC--TGC-ACTGTAATGACAATTAGC
gi|8 : acaaagtcCG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGCTG-------------GTT--------GT--------------AGGCACAACCA-ACAAT---------TCACAAA-CAATTA-------ATAAG--GGTTGTT--TTAT-TGCG-A---AAAAAACAA-C-T-T-GACAGCCGTGTAAGGCTAACGGTGTATAAACGAC-CAA-AT-TT-ACCGACACAGGAAGTCGG-TT-TTCG-AGATGCCTTTTTAGGCCACGTC-A-G-TTTTGACGGAACTAAATTAAA-CTGCG-C-G--------------------TCGTGAACATT-----T-AAGTGCAGAAAT-AACACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAAC-TT-AGAAATTGAATTTACTGTAACTTTAGAAATCGGACTTGTTGT-ACTTT------------TAATAACTTTAGATTGAACTTATAATAAACATATGTAATATCAACTAA-TTTGTGAA-C-TTGTATTTCC-CACCTCgcaaccgcgtgatgcatttagctaaaaatagacgctggttgtaggcacaaccaacaattcacaaacaattaataagggttgttttattgcgaaaaaaacaacttgacagccgtgtaaggctaacggtgtataaacgaccaaatttaccgacacaggaagtcggttttcgagatgcctttttaggccacgtcagttttgacggaactaaattaaactgcgcgtcgtgaacatttaagtgcagaaataacacttgtgattactttaagaactgaaacaactttaggaatttgtaatggtgataacttagaaattgaatttactgtaactttagaaatcggacttgttgtacttttaataactttagattgaacttataataaacatatgtaatatcaactaatttgtgaacttgtatttcccacctc
gi|9 : acaaagtcaggaatcaaatatggatttataagaataattcggatttatgtagcaatacggatttataagaatgaaatgaaaaaataaaaagcttgcataaaaaatgcagaacacgggacaattacaccaccactcatatgacccatttgtcaaatgtctcattaactagcgagctcgcacatactgcactgtaatgacaattagcgcaacAAT-AAA----GATTTAT----------------------A-----------------AGAACAGATTGGATTTCTGTA---------ATT------AACAT----ACAT--------------AA---A-TTAAAA-AACTCCCATAA--AAA----TAC----------AGAACATGGGACA-----TTATACTGC----TCACCTGACCCATTTACC-A-AA-CGTCTCATTA------CAA-CAA-G-GCAGGCGGATTCG--TACATATAATG--ACCATCATGGCAAATAA-TAAAATGG-AGAAATTGTCACAGCTAA-TGGCTGATAAT----GGGCG-----CGTGGTGCACTTA------GC------AAAGTA-------GATGTCGTTCTTACTAGTAAAAC--------GT--------------GGGCGC---------------------ATCTAA-CAATTGGCAATTTATAAA--AATTG-T--TTAT-GATC-A---AAA---CAA-T-T-T-GACAGCCATTTGAGACTAACGGTATATAAGAGAC-CCATTT-TT-ACCTATACAGGGACTTAG-AT-TTCG-A-ATACT-TTTTAGGCCTCGTT-A---CTTTGTCGAAACTAAATT-AGATTACGCC-G--------------------TTGTGAATATA-----T-AAGTT-AGAAAT-TGAACTTTAGATTGAATTTATA-ATAAACATCTATAATCTCAGCTAACTTATGAATT-----TGCA
Alignments
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 1111 1111 1111111111 11111 222222222 1 111 1111111 3333333333333333333333333333333333333333 11111111111111111111 1111 22222222222222222222
lowQualScore : 4 3 555 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 55 3333333333 555 3333 3 0 0000 6666 3333333333 0 3 22222 2 3 2 0 3 3 3 888888 555555555 0 44 888 88 77 444 1 3 2 44 888 77777 888888 6666 2 0000000 4 9999999999999999999999999999999999999999 99999999999999999999 1 1 3 44 88 0 3 1 3 555 555 3 3 3 6 0 3 88 3 3 4 3 3 3 3 7 77 1 3 8888 5 44 9 3 88888888888888888888 77777 3 55 99 555 2 2 6666 0 555 555 4 77777 6 3 1 1 1 1 2 2 2 555
lowQualScore : . . ... . ...................................................................................... .. .......... ... .... . . .... .... .......... . . ..... . . . . . . . ...... ......... . .. ... .. .. ... . . . .. ... ..... ...... .... . ....... . ........................................ .................... . . . .. .. . . . . ... ... . . . . . . .. . . . . . . . . .. . . .... . .. . . .................... ..... . .. .. ... . . .... . ... ... . ..... . . . . . . . . . ...
lowQualScore : 0 3 999 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 5555555555 444 2222 1 2 1111 8888 5555555555 2 2 99999 2 6 9 7 1 1 1 999999 333333333 2 22 111 44 66 222 0 3 0 55 222 77777 888888 5555 0 0000000 0 6666666666666666666666666666666666666666 22222222222222222222 0 0 1 22 55 4 1 4 1 444 444 3 3 3 7 4 3 55 3 3 2 7 3 3 1 0 33 0 3 2222 2 22 2 1 11111111111111111111 77777 1 77 66 999 9 9 5555 8 444 444 2 77777 5 3 0 7 9 6 9 9 9 222
consensus : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCA---ATTTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTCATTAG-----CCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNG-------------GAT--------GT--------------AGGCACGGCCG-GCAAT---------TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
Reference ( family-1560 ) : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCA---ATTTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTCATTAG-----CCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNG-------------GAT--------GT--------------AGGCACGGCCG-GCAAT---------TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
gi|1 : ----------AA---C-T--AAA-ATCTTACACACCCAAACA--TG------------GAACATAGA----------ATACCGCT---TCATCTGACCCATTTATC-A-AAACGTCTCATTAA-----CCA-C-AAG-GTATGCGAATTTG--CACATGT--AGAGACCGTTGTGGCAATTAA-TAAAACAA-GCAAATTGTCACCGCAAA-TGACTAGTAATGGGCGGACGATTCGCGTAGTA-ATT--------GCTG----GAA-TA-------AA-GTAGA------------GAT--------GTCACCCTTACTAGTAAAACATGG--GAGCG-T---------CATCTAG-CAATGAGCAATTAA--AGCTAGATGTT----AA-TGAGCA---AAA---CAAGT-T-T-GAAAGCCGTATGGGGAAATTTGTATATAAGAAACTCAT-TT-TT-ACCAATGCGGGGAGTCGA-TT-TACGAATGTA---TTTTAAGCCT--TT-G-A-TTTT------ACTAAATT-AGACTATGAC-GC-------------------TTGTGATCAGT-----T-AAGTT-AGAAAT-TAAGCTTGTGAT-----------------------AA---CA--T---TT-GAAATT-----T-TAAT-------ACGTTAAGGAATTGGACTTGTTATACATTT--GAATTGGACTTGTGGTAACTTTAGTTTGAACTTATA-------------------ATAATAAACGTCAGTAATCTCAG-----TTT----A-C-TTGTGTTT-T-ATACTCATTA
gi|10 : aataaagttaggaatctaatatagattggatttctataatcA--AAAAA--TGC----------AGAATATACGGCA---ATTTGTACCGCCGC-TCACTTGATCTATTTATC-A-AA-CAACTCATTAG-----TCA-C-G-G-ACAGGCGTATCTG--CATACAT--CGC-TCCGCCATAGCCATTAACTAAAACAA-GGAATCTGTCACAGCTAA-TGG-TGGACATA--AGGACG-----CGTGATACATTTA------GCTA----AAAATA-------GACATTT-------------GAT--------GT--------------AGGCACGACCA-GCAAT---------TAACAAA-CAATAAGCAATTAATAAG--GTTTGTT--TTAT-TGCG-A---AAA---TAA-C-T-T-GACAGCCGTGTAAGGATAACGATATATAAACGTT-CAA-AT-TT-ACTAACACGAGGAGTCGG-TT-TTCG-ACATAC--TTTTAGGCTACGTC-C-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGATT--ACTT-TT-AGAA----CTGAAA---CAACT---CGAGGAATT-----TGTAACGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACTTGTGGTAACTTTGAATTAGACTTGTAATAACTTAAGATTGTACTTATAATAAATATTTGTAATCTCAACTAA-TTTGTTAG-C-ATGTATTTCCTACCcgctactttggccatttaccttcctttgttatagagtacgataactttaaaaatgtgcttatgggtcctcttatgtattccacgtcttatttaaataattaatacagtaagataattggtgactaattagttactgtggagaaaataaaatttctagtatagaaaacgccccataaaataaccaaaattcaaagcaaattaacaacacaattcaaaaaaatttaaattttattaaaattagtttttaggacattaaataagtaataatagttcagcaaaattcaaagcacaaatatatacatagaagttatcaaatcaaaagtcaatttacagagtacatttcaaagcaaatgatttacaaaagagatgttt
gi|11 : ATGGTAATTAACTAAA-CAA-AGAATCTGTCGCAGCTAA-TGGTGGACAA-A--CGGACG-----CGTGATACATTCA------GCTA----AATATA-------GACATGG-------------GTT--------GT--------------GGGCACGACCA-GCAAT---------TAACAAG-CAATTAGTAATTAATAAG--GTTTGTT--TTAT-TGCG-A---AAA---TAA-C-C-C-CACAGCCGTGTGAGACTAACGATATATAAACGAC-CAA-AT-TT-ACCAACACGAAGAGTCGG-TT-TTCG-AGATAC--TTTTAGGCCAAGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCGTGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTACGAATT-----TGTAATAGTGACAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACATGTGGTAACTTTGTATTAGACTTGTAATAACTTTAGATTGAATTTATAATAAACACTTGTAATCTCAACAAA-TTTGTGAA-C-TTGTATTTTC-AACCTCAt
gi|12 : TACCGCT---TCATCTGACCTATTTATCAA-AA-CGTCTCATTAA-----CCA-CAA-G-GAAGGTGAATTTT--CACATGT--AGTGACCGTTTTGGCAATT-----AGACAA-ACAAATTATCAACGCTAT-TGACTGGTAACAGGCGGACG-----ACTGGCGTAGTAA------TGTA----CAGATATCATCCTTAC-TAG-------------TA-------------------------AAACATGG--GAGCA-------------TCTAA-CAATTAGCAAATAATAAA--AGTTATTAATGATCT--------AAA---CAA-CAT-T-GACAGCCGTATGGGGAAATCTGTATACAAGAAAC-CCATTT-TT-ACCAATGC-GTAAGTCTG-TT-TTCG-A-ACAT--GTTTAGGGCTCGT
gi|13 : TCG-ATATAC--TTTTAGACCTCATC-A---CTTTGATGAAACTCAATTAGA-TTGCG-CCG--------------------TCGTGAACATTAGAAGTGAAGTTA-GAAAT-TAAACTTGTGACA--AATT-TA-GGAA----TTGAA-------------------TT-----TATAATAGTGATTACTT--AGAAATTTAACTTAAGATAACTTTAGAAATTGGACTCGTTAGAACTTTAAGTTAGACTTGTAATAACTTTAGATTAAATTTATAATAAACATTTATAATCTCAGCTAA-TTTGTGAA-TATTGTATTTCA-ACCCTCAatattccctcaaacaaaattggtttacgtcgcttgtgagcagt
gi|14 : CG-C-G--------------------TAGTAGTCAGT-----T-AAGTTA-GAAAT-TAAACTTGTGACA--ACTC-TA-
gi|14 : AGAAAT-TGAACTCGTAATA--ATTT-TA-GAAA----GTGTGA---TAACT---TT-GGAAAT-----TGAATTTGTGATAACTTT-AGAAATCGAACTTACAATACGTTTAGAAATCGGCCTTGTGATAACTTTAAATTGGACTTGTGATTACTTTAGATTGAACTTATAATAAACATCAGTAACCTCAGTTAA-CGTGTGAA-C-TTGTGTTTgaaattgaactcgtaataattttagaaagtgtgataactttggaaattgaatttgtgataactttagaaatcgaacttacaatacgtttagaaatcggccttgtgataactttaaattggacttgtgattactttagattgaacttataataaacatcagtaacctcagttaacgtgtgaacttgtgtttt
gi|15 : cgcgtagtagtcagttaagttagaaattaaacttgtgacaactctCAACAGTGTATTTATAAGAGT-AGAT-TGGATTTCTAT----------------------------------------AATAA-----ATT--------AAAAC----TTAC----AC------AAATT-AA----------AA---A----------CTCGCAT----AAAAA--TAC----------CAAATACGGGACA---G--TA---CGCCGCTTCACCTGACTCATTTATC-A-AA-CGTCTCATTAA-----CAA-CAA-G-GTAGGCGAATTTG--AACt
gi|16 : ataaggacatatttggaATTTATAAGAGTA-----AATTG-AATTTCTATAATAA---ACT--AAA-ATCTTACACAA--ATTAA--TACTCCAAACGGAACAACACGAAACACAGA---ATAC-GCT---TCATCTGACATATGTATC-AAAA-GGTCACATTAA-----CCACC-A-A-GTGGGCGAA---------AGAG--TG--ACCACTACGCCAATTAA-TAAAACAAGAAAAACAGTCACAtttgatgaaactaaattacgaaatactgaat
gi|17 : CAGGAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGC-----------------A-----------------AGACTTATTTGGATTTCTGTAGCAATACTGATTGATAAGAATG-----AAATG-AA----------GA---A-T--AAA-AGCTTGCAT-A--AAAAA--TGC----------AGAATATACAGCA---ATTTGTACCGCCGC-TCACtcaaa
gi|18 : acaaagtAACTTTAGAAATTGGACTTGTTATAACTTTGAATTAGACTTGTGATGATTTTAGATTGAATTTATAATAAACATCAATAATCTCAGTTAA-CTTGTGAA-C-TTGTGTTT-T-ATTATCATTAt
gi|19 : tagcaattaataaagttgttgatgatgaaTAAAACAA-ACAAACTTTCACCACTAA-TGGCTGACA--A--CGGGCG-----GGTGATACATGTAATAATTGCTAAAACAAAGTA-------GATGT----------------ATCCTTACTAGT--------------AAA-ACG--TG-G-GAG---------CACCTAG-CAATTAGCAATTAATAA---AGTTG-T--TGAT-GATG-A---AAA---Ccgc
gi|2 : aaCAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGCATTCAGTATTGATTTATA-----------------AGGATGATTTGGATTTCTGTAGT-------ATTCA-AAAAACGCACACAAATG-AA----------AA---A-TA-AAA-AGCTTGCAT-A--AAAAA--TAC----------AGAGCACGGGGCA---A-TTATACCACCGC-TCATATGACCAATTTGTC-A-AA-TGTCTCATTAA-----CTA-----------GCGAGCTCG--CACATAC--TGC-ACCGTCATGGGAATTAGC--GAGCGG-AGAGGTTGTCACAGCTGA-TGGTGGACAAT----GGATG-----CGTGATGCATCTA------GTT-----AAAATA-------GACGTTG-------------GTT--------GT--------------AAGCACAGCCA-ACAAT---------TAACAAG-CAATTAGCAATTAATATG--GGTTGTT--TTAT-TGCG-A---AAT---CAA-C-TCT-GACAGCTGTGTAAAACTAAC-GTATATAAACGAC-CAA-AT-TT-ACCGACACAGGGAGTCGGAAA-TTCG-ATATAC--CTTTAGACCAGTTC-A---CTTTGACGGAACTCAATT-AGACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGATT--ACTT-TA-AGAA----CTAAAA---CAACT---TTAGAAATT-----TATAAACGTGATAACTTT-AGAAATTGAACTTACAGTAGCTTAAGAAATTGGATTCGTCATAACTTTGAATTAGACTTTTAATGATTTTAGATTGAATGAATAATATATATTTGTAATCTCAGCTAA-TTTGTGAAGT-TTGTATTTCT-ACCCTCATTt
gi|20 : acaaagtAGGAATCCAACA-TGGATTTATAAG-AC-AA--------TTCTGTA----------------------------------------------------------GCAATACGGATTTATAAGAATG-----AAATG-AA----------TA---A-T--TAA-AGCTT
gi|21 : caaagtaGGAATCCAATA-CAGATTTATAAGAGT-AGAT-TGGATTTCT
gi|22 : aaaagcataatgtaacatagttgACATCAGTAATCTCAATTAACTTTGTGAA-C-TTGTGTTTaataaaacaaa
gi|3 : CAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAATA-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAATATATGGCA---ATTTGTACCGCCGC-TCACTTGATCTATTTATC-A-AA-CAACTCATTAG-----TCA-C-G-G-ACAGGCGTATCCA--CATACAT--CGC-TCCGCCATAGCAATAAACTAAAACAA-GGAACCTGTCACAGCTAA-TGG-TGGTAATA--CGGACG-----CGTGATACATTTA------GCTA----AAAATA-------AACGTAG-------------GAT--------GT--------------AGGCACGACCA-GCAAT---------AATCAAG-CAATAAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAG---CAA-C-T-T-GACAGCCGTGTAAGGCTAACGATTTATAAACGAC-CAA-AT-TT-ACTAACACGAGGAGTCGG-TT-TTCG-ACATAC--TTTTAGGCTACGTC-A-GTTTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGATA--ACTT-TT-AGAA----CTGAAA---CAACT---CGAGGAATT-----AATAATGGTGATAACTTT-AGAAATTGAACTTACAGTACCTTTAGAAATTGTATTTGTGGTAACTCTGATTTAGACTTGTAATAACTTTAGATTGAACTTATAATAAACATTTGTAATCTCAACTAA-TTTGTGAA-C-TTGTATTTCC-AACCTCATTAtatgcttat
gi|4 : CAGGAATCCAACA-TGAATTTATAAGAAT-CATT-CGGATTTCTGTAGC-----------------A-----------------AGAATA-----------------------GATTTATAAGGAAG-----AAATG-AA----------AA---A-T--AAATAGCTTGCATAA--AAAAAAATGC----------AAAGTACACAATA---ATTTGTACCGTCGC-CCACTTATCCTATTTAGC-A-AA-CAACTCATTTG-----TCA-C-G-G-ACATGGGTATTCG--CATATAT--CGC-TCCACCATAGCAATTAACTAAAAC-A-AGAATCTGTCACAACTAA-TGGTGAGCA-TG--CGGACG-----CGTGATACAGTTA------GCTA----ACAATA-------GACGTAG-------------GAT--------AT--------------GGGCACGGCTG-GCAAT---------TAACAAG-CAATAAGCAATACATAAA--GGTTGTT--TTAT-TGCG-A---AAA---TAA-C-T-T-GACAGCCGTGCGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACAAACCCCGGGAGTCGG-TT-TTCG-AGATAC--TTTGA-ACTATGTCAA-A-ATTTGACGGAACTAAATTAAAACTACG-C-GCACTAAATTAAAACTGTGCTCCGTGAACTTT-----T-ATGTTAAGAAATAGGAACTTGTGATT--A-TT-TATAGAA----CTGAAG---CAACT---TTAGGAA-T-----TGTAATGGTGATAACTTT-AGAAACTAAACTTATAGT-ACTTTAGAAACTGTACTTGTAGTAACTTTGACTTAGA------------------TGAACTTGTAATAAACATTTATAATCTCA---AA--TTGTGAA-C-TTATATTTAT-ACCCTCATT
gi|5 : aacaaagtCAGGAATTCAATA-TGGATGTATAAGAAT-AGAT-TGGATTTCTGTGGT-----------------A-----------------AAAAAAAC----------GTA----CACAAATT-----------------ATA-AA----------AA---A-----AA-AACTCCCATAA--AAA----TTC----------A-AACACGGGACA---ATT-ATACCACCGC-TCACCTGACCCATTTGTC-A-AA-TGTCTTATTAGATTAGCTA-C-AAG-GCAGGCAAGTCCG--TACATAT--TGC-ACCGTCATTACAATTA--TAAAACGG-AGAAATTGTCACAGCTAA-TGG-TGG--ATA--CGGGCG-----CGTGATGCACTTA------GC------AAAGTA-------GATGTCGTTCTT--------ACT--------AT--------------AAAAACG-TTG-GCG-----------CATCTAA-CAATCAGCAATTAATTAA--AGTTGTT----A---ACG-ATCAAAA---CAA-C-T-TTGACAGCCGTGTAAAACCAACGGAATATAAAGGAC-CTG-TT-TTTACCTGTACGGGGACTCGG-AT-TTTG-ATATAC--TTTTAGGCCTCGTT-ACG-TTGT--CGAAACTAAATTAGAA-TAAGTC-A--------------------TGGTGAACATT-----T-AAGTTA-GAAAT-TAAACTTGTGATT--ACTT-AA-GGAA----TTGTGG---CAACT---TTAGGAATTGAATTTATAATAGTAATA-CTTT-AGAAACTGAGCTTACAGAAACTTTAGAAATTGGACTCGTTATAACTT------AGATTTGTAATGACTTTAGATTGAATTTCTAATAAACATTTATAATCTCAGCTAA-CCTGTGAA-T-TTGTATTTCC-ACCCTCATTA
gi|6 : taacaaagtCAGGAATCCAATA-TGGATTTATTAGAAT-ATAT-TAGGTTTCTGTAGT-----------------A-----------------GT--TAATT-GGATTTCTGTAGTAGTA-GTAGTTA--AAAACGT----ACAC---A----------AATTTA-T--AAA-ACCT--CA-------------GC-----------GAATACGA--CA---ATTTATATCGCCGC-TTACTTGATCCATTTGTC-A-AA-CGTCTCATTAG-----CTA-C-G-GCACAGGTGGACCCGTGCACAT-T--TGC-ACCGCCATGGCAATTAAC-AAAACAC-AGAATCTGTCACAGCCAA-TATTTGACAAT----GGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTGG-------------GTC--------AT--------------AGGCACAGCCT-ACAAT---------TAGCAAAACAATTAGCATTTAATAAG--GGTTGTT--TTAT-TGCG-A---ATA---CAA-C-T-TTGACAGCCGTGTAAGACTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACAGGGAGTCGG-AAACTCG-ATATAC--CTTTAGGCCACGTC-A-T-TTTTGACGGAACT-----------GCG-C-G--------------------TCGTAAACATT-----T-AAGTTAAGAAAT-AAAACTTGATATT--ACTT-TA-AGAA----CTGAAA---CAACT---TT-TGAATT-----TGTAATGGTGATATATTT-AGGAATTGAACTTGCAGTAACTTTAGAAATTGGATTCGTCGTAACTTTGGATTAATCTTTTAATGGCTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTTATGAA-C-TTGTATTTCT-ACCCTCA
gi|7 : agtCAGGAATCCAATA-TGGATTTATAAGAAT-AATC-GGGATTTCTGTAGC-----------------ATTCAATATGGATTTATAAGAATGATTTGGATTTCTGTAGTA-TAAAAA---A-AAGTACAC----AAATG-CA----------AA---A-C--AAA-AGCTTGCATAA--AAAA-----C----------AGAACACGGGGCA---ATT-ATACCACCGC-TCATATGACCCATTTGTC-A-AA-TGCCTCATTAG-----CTA-----------GCGAGATCG--TACATAC--TGC-ACCGTTATGGCAATTAACGAGA--GG-AGAGATTGTCATAGCCAAATGG-TG--AATAA-TGGGTG-----CGTGATGCACGAA------GCTA----AAA---------------TG-------------GAT--------GT--------------CGTTCTTGCTG-GTAATGCGGAGGTGCATCTAA-CAATTAGCAATTAATAAA--GGTTGTTAATAAT-C----A---AAA---CAT-C-T-T-GACAGCCGTGTGAAACGAACGGTATATAATAGAC-CCA-TTCTC-GCCTGTACTGGGAGTCGG-TT-TTCG-AGACCG--ATTTAGGCCTCGTC-ACG---TTGACGAAACTAAATTAGAA---TA-A-G--------------------TCGTGAGCATT-----T-AATTT-AGAAAT-TAAACCTGTAATT--ACTT-TA-AG-A----TTGTGA---CAACT---TAAGGA--T-----TG-AAT--TTATAA---T-AG----TGA--------TAACTTTAGAAACTGGATTCGTCATAACTTTGAATAAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTAGTGAA-C-TTGTATCTCT-
gi|8 : aagtAGGAATCAAATATGGATTTAT----------------------A-----------------AGAATAATTCGGATTTATGTAGCAATACGGATTTATAAGAATG-----AAATGAAA----------AA---A-TA-AAA-AGCTTGCAT-A--AAAAA--TGC----------AGAACACGGGACA---A-TTACACCACCAC-TCATATGACCCATTTGTC-A-AA-TGTCTCATTAA-----CTA-----------GCGAGCTCG--CACATAC--TGC-ACTGTAATGACAATTAGC
gi|8 : acaaagtcCG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGCTG-------------GTT--------GT--------------AGGCACAACCA-ACAAT---------TCACAAA-CAATTA-------ATAAG--GGTTGTT--TTAT-TGCG-A---AAAAAACAA-C-T-T-GACAGCCGTGTAAGGCTAACGGTGTATAAACGAC-CAA-AT-TT-ACCGACACAGGAAGTCGG-TT-TTCG-AGATGCCTTTTTAGGCCACGTC-A-G-TTTTGACGGAACTAAATTAAA-CTGCG-C-G--------------------TCGTGAACATT-----T-AAGTGCAGAAAT-AACACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAAC-TT-AGAAATTGAATTTACTGTAACTTTAGAAATCGGACTTGTTGT-ACTTT------------TAATAACTTTAGATTGAACTTATAATAAACATATGTAATATCAACTAA-TTTGTGAA-C-TTGTATTTCC-CACCTCgcaaccgcgtgatgcatttagctaaaaatagacgctggttgtaggcacaaccaacaattcacaaacaattaataagggttgttttattgcgaaaaaaacaacttgacagccgtgtaaggctaacggtgtataaacgaccaaatttaccgacacaggaagtcggttttcgagatgcctttttaggccacgtcagttttgacggaactaaattaaactgcgcgtcgtgaacatttaagtgcagaaataacacttgtgattactttaagaactgaaacaactttaggaatttgtaatggtgataacttagaaattgaatttactgtaactttagaaatcggacttgttgtacttttaataactttagattgaacttataataaacatatgtaatatcaactaatttgtgaacttgtatttcccacctc
gi|9 : acaaagtcaggaatcaaatatggatttataagaataattcggatttatgtagcaatacggatttataagaatgaaatgaaaaaataaaaagcttgcataaaaaatgcagaacacgggacaattacaccaccactcatatgacccatttgtcaaatgtctcattaactagcgagctcgcacatactgcactgtaatgacaattagcgcaacAAT-AAA----GATTTAT----------------------A-----------------AGAACAGATTGGATTTCTGTA---------ATT------AACAT----ACAT--------------AA---A-TTAAAA-AACTCCCATAA--AAA----TAC----------AGAACATGGGACA-----TTATACTGC----TCACCTGACCCATTTACC-A-AA-CGTCTCATTA------CAA-CAA-G-GCAGGCGGATTCG--TACATATAATG--ACCATCATGGCAAATAA-TAAAATGG-AGAAATTGTCACAGCTAA-TGGCTGATAAT----GGGCG-----CGTGGTGCACTTA------GC------AAAGTA-------GATGTCGTTCTTACTAGTAAAAC--------GT--------------GGGCGC---------------------ATCTAA-CAATTGGCAATTTATAAA--AATTG-T--TTAT-GATC-A---AAA---CAA-T-T-T-GACAGCCATTTGAGACTAACGGTATATAAGAGAC-CCATTT-TT-ACCTATACAGGGACTTAG-AT-TTCG-A-ATACT-TTTTAGGCCTCGTT-A---CTTTGTCGAAACTAAATT-AGATTACGCC-G--------------------TTGTGAATATA-----T-AAGTT-AGAAAT-TGAACTTTAGATTGAATTTATA-ATAAACATCTATAATCTCAGCTAACTTATGAATT-----TGCA
blockSeqs : . C ATA AGCATTCAGTATTGATTTATAAGGATGATTTGGATTTCTGTAGTATTCAAAAAACGCACAC GA TTTCTATAAT TTT TTA T AA AAAA TCCAAACGGA G CAGA T G T A A . GATTAG CAAGGA TG AAT TG CT AAG T A T GA AGG . ATAATT AAAC A TCATCCT T TTCTTACTAGTAAAACGT GCTGGTAATGCGGAGGTGC A A A . AA C G . TCA AAA . A C T . TT C T A G A A . C CT A A GTT A AC T C CACTAAATTAAAACTGTGCT AGAAG G AA AA TGA A T ACAT TCT AAC A GAATT G . G A A A C G A CCT
blockSeqs : . . TT AGCATTCAATATGGATTTATAAGAATGATTTGGATTTCTGTAGTATAAAAAAAAGTACAC G . . CT . AA AA . A AT T G . . . . G CAAGGT . C C CT AA T . C AC AA . . . A . G ATCCTTACTAGT ACCAGCAATT A A . . AA . G . . . . . . T . TT . . A G . . . G T A . CGT A AC C . . . . AA AA T . . . . . A . A . G A A A . . . TC
blockSeqs : . . TT AGCAAGACTTATTTGGATTTCTGTAGCAATACTGATTGATAAGAATG G . . TA . AA AA . A AT T G . . . . A CCAAGT . A C CT AA A . C GT A . . . A . A TTCTTACTAT ACCAGCAATT T T . . . . A . . . . . . . . A . . A A . . . T . T . GT A AC . . . . . AA AG T . . . . . A . A . T G A G . . . CA
blockSeqs : . . AT AGCAAGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAATA G . . TA . AA AA . G AT T G . . . . A CAAGGC . T C CT AA A . T AC A . . . G . T GATGT GCCAACAATT C T . . . . G . . . . . . . . A . . G G . . . T . T . GT A AC . . . . . AA A A . . . . . A . T . G A T G . . . CT
blockSeqs : . . TT AAGAATAATTCGGATTTATGTAGCAATACGGATTTATAAGAATG G . . T . AA AA . G AT T G . . . . A CGGCAC . T C CG AA A . T AC A . . . A . A GTTGT ACCAGCAATA A A . . . . G . . . . . . . . A . . A C . . . C . A . AA A AC . . . . . AA T A . . . . . A . C . T A G G . . . CC
blockSeqs : . . TT AGTAGTTAATTGGATTTCTGTAGTAGTAGTAGTTAAAAACGT G . . T . AA AA . G AT T G . . . . A CAAGGC . C C T GG G . T GT A . . . A . A GTTGT GCTGGCAATT T A . . . . G . . . . . . . . A . . A G . . . G . A . TT A AT . . . . . AA T A . . . . . A . G . C A G G . . . AT
blockSeqs : . . AT AAGAACAGATTGGATTTCTGTAATTAACAT G . . T . A AA . A AT T G . . . . G CGGAC . C C C AA C . C GC G . . . A . C GATGT GCCTACAATT A A . . . . A . . . . . . . . A . . T A . . . T . A . CG A T . . . . . CA T T . . . . . A . G . G T A A . . . CC
blockSeqs : . . AT AGCAAGAATAGATTTATAAGGAAG A . . T . A AA . A AT T G . . . . G CGGAC . T C T GG T . . AC A . . . G . G GATAT ACCAACAATT T T . . . . G . . . . . . . . T . . G T . . . T . T . GT A A . . . . . A A A . . . . . A . A . A C G A . . . CT
blockSeqs : . . TC AGCAATACGGATTTATAAGAATG G . . T . A A . G G T G . . . . G CGGAC . T C C AC A . . AT . . . . A . T GTCAT TGGGAGC G A . . . . G . . . . . . . . A . . T A . . . G . A . C . A . . . . . A T T . . . . . A . G . T A G G . . . CT
blockSeqs : . A GGTAAAAAAAACGTACACAAATT . . . C . . . . A A . A . . . . G . . T . T GG T . . G . . . . A . T GATGT TTGGCGC T T . . . . A . . . . . . . . T . . G A . . . G . T . C . C . . . . . A A T . . . . . . . G . C A G A . . . CC
blockSeqs : . . . . . . . . . . A A . . . . . . A . . T . . GG A . . . . . . . G . C GTTGT GGAGCA A A . . . . . . . . . . . . . A . . T . . . . . . A . C . . . . . . . A T T . . . . . . . . . C . A A . . . T
blockSeqs : . . . . . . . . . . . . . . . . . A A . . . . . . TA . T T . . . . . . . . . . . T . . . . . A A T . . . . . . . T . . A . . .
blockSeqs : . . T T . . . . . .
blockSeqCons : AA** AT*** C* A** ***** GNTGT*********************************** GCCAGCAATT********** ** ******************** AA T** CC*
originalCons : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCA---ATTTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTCATTAG-----CCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNG-------------GAT--------GT--------------AGGCACGGCCG-GCAAT---------TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
finalCons : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCAAT---TTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTCATTAG-----CCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA-------GACGTNGGNTGT-----------------------------------AGGCACGGCCAGCAATT----------ANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG-A---AAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-CAA-AT-TT-ACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAGGAATT-----TGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
Alignments
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 1111 1111 1111111111 11111 222222222 1 111 3333333333333333333333333333333 11111 1111 22222222222222222222
lowQualScore : 4 3 555 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 55 3333333333 555 3333 3 0 0000 6666 3333333333 0 3 22222 2 3 2 0 3 3 3 77777 1 555555555 0 44 888 88 77 444 1 3 2 44 888 77777 888888 6666 2 44 1 6666666666666666666666666666666 555 3 66 55555 1 1 3 44 2 88 3 1 888 555 3 6 3 3 0 3 3 88 3 4 3 3 3 3 7 77 1 3 8888 5 44 9 3 88888888888888888888 77777 3 7 99 555 2 2 6666 0 555 555 9999999 6 3 1 1 1 1 2 2 2 555
lowQualScore : . . ... . ...................................................................................... .. .......... ... .... . . .... .... .......... . . ..... . . . . . . . ..... . ......... . .. ... .. .. ... . . . .. ... ..... ...... .... . .. . ............................... ... . .. ..... . . . .. . .. . . ... ... . . . . . . . .. . . . . . . . .. . . .... . .. . . .................... ..... . . .. ... . . .... . ... ... ....... . . . . . . . . . ...
lowQualScore : 0 3 999 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 5555555555 444 2222 1 2 1111 8888 5555555555 2 2 99999 2 6 9 7 1 1 1 77777 2 333333333 2 22 111 44 66 222 0 3 0 55 222 77777 888888 5555 0 22 0 9999999999999999999999999999999 444 1 88 22222 0 0 1 22 3 55 1 4 555 444 3 7 3 3 4 3 3 55 3 2 7 3 3 1 0 33 0 3 2222 2 22 2 1 11111111111111111111 77777 1 9 66 999 9 9 5555 8 444 444 5555555 5 3 0 7 9 6 9 9 9 222
consensus : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCA---ATTTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTC-----ATTAGCCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA--GACGTNG-----GN--T-----GT--------------AGGCA---CG-GCCAGCAAT-TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG---AAAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-C-AA-AT-TTACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAG-----GAATTTGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
Reference ( family-1560 ) : CAGGAATCCAACA-TGGATTTATAAGAAT-AANT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAACG-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAACACGGGGCA---ATTTATACCGCCGC-TCACCTGACCCATTTATC-A-AA-CGTCTC-----ATTAGCCA-C-G-G-GCAGGCGAATTCG--CACATAT--CGC-ACCGTCATGGCAATTAACTAAAACGA-AGAANCTGTCACAGCTAA-TGGCTGGCAATA--CGGACG-----CGTGATGCATTTA------GCTA----AAAATA--GACGTNG-----GN--T-----GT--------------AGGCA---CG-GCCAGCAAT-TANCNAG-CAATTAGCAATTAATAAG--GGTTGTT--TTAT-TGCG---AAAA---CAA-C-T-T-GACAGCCGTGTGAGGCTAACGGTATATAAACGAC-C-AA-AT-TTACCGACACGGGGAGTCGG-TT-TTCG-ANATAC--TTTTAGGCCNCGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-NAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAG-----GAATTTGTAATGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGGACTCGTNGTAACTTTGAATTAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAGCTAA-TTTGTGAA-C-TTGTATTTCC-ACCCTCATTA
gi|1 : ----------AA---C-T--AAA-ATCTTACACACCCAAACA--TG------------GAACATAGA----------ATACCGCT---TCATCTGACCCATTTATC-A-AAACGTCTC-----ATTAACCA-C-AAG-GTATGCGAATTTG--CACATGT--AGAGACCGTTGTGGCAATTAA-TAAAACAA-GCAAATTGTCACCGCAAA-TGACTAGTAATGGGCGGACGATTCGCGTAGTA-ATT--------GCTG----GAA-TA--AA-GTAGA----GA--T-----GTCACCCTTACTAGTAAAACA---TG-GG-AGCG-T-CATCTAG-CAATGAGCAATTAA--AGCTAGATGTT----AA-TGAGC--AAAA---CAAGT-T-T-GAAAGCCGTATGGGGAAATTTGTATATAAGAAACTC-AT-TT-TTACCAATGCGGGGAGTCGA-TT-TACGAATGTA---TTTTAAGCCT--TT-G-A-TTTT------ACTAAATT-AGACTATGAC-GC-------------------TTGTGATCAGT-----T-AAGTT-AGAAAT-TAAGCTTGTGAT-----------------------AA---CA--T---TT-G-----AAATTT-TAAT-------ACGTTAAGGAATTGGACTTGTTATACATTT--GAATTGGACTTGTGGTAACTTTAGTTTGAACTTATA-------------------ATAATAAACGTCAGTAATCTCAG-----TTT----A-C-TTGTGTTT-T-ATACTCATTA
gi|10 : aataaagttaggaatctaatatagattggatttctataatcA--AAAAA--TGC----------AGAATATACGGCA---ATTTGTACCGCCGC-TCACTTGATCTATTTATC-A-AA-CAACTC-----ATTAGTCA-C-G-G-ACAGGCGTATCTG--CATACAT--CGC-TCCGCCATAGCCATTAACTAAAACAA-GGAATCTGTCACAGCTAA-TGG-TGGACATA--AGGACG-----CGTGATACATTTA------GCTA----AAAATA--GACATTT-----GA--T-----GT--------------AGGCA---CG-ACCAGCAAT-TAACAAA-CAATAAGCAATTAATAAG--GTTTGTT--TTAT-TGCG---AAAA---TAA-C-T-T-GACAGCCGTGTAAGGATAACGATATATAAACGTT-C-AA-AT-TTACTAACACGAGGAGTCGG-TT-TTCG-ACATAC--TTTTAGGCTACGTC-C-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGATT--ACTT-TT-AGAA----CTGAAA---CAACT---CGAG-----GAATTTGTAACGGTGATAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACTTGTGGTAACTTTGAATTAGACTTGTAATAACTTAAGATTGTACTTATAATAAATATTTGTAATCTCAACTAA-TTTGTTAG-C-ATGTATTTCCTACCcgctactttggccatttaccttcctttgttatagagtacgataactttaaaaatgtgcttatgggtcctcttatgtattccacgtcttatttaaataattaatacagtaagataattggtgactaattagttactgtggagaaaataaaatttctagtatagaaaacgccccataaaataaccaaaattcaaagcaaattaacaacacaattcaaaaaaatttaaattttattaaaattagtttttaggacattaaataagtaataatagttcagcaaaattcaaagcacaaatatatacatagaagttatcaaatcaaaagtcaatttacagagtacatttcaaagcaaatgatttacaaaagagatgttt
gi|11 : ATGGTAATTAACTAAA-CAA-AGAATCTGTCGCAGCTAA-TGGTGGACAA-A--CGGACG-----CGTGATACATTCA------GCTA----AATATA--GACATGG-----GT--T-----GT--------------GGGCA---CG-ACCAGCAAT-TAACAAG-CAATTAGTAATTAATAAG--GTTTGTT--TTAT-TGCG---AAAA---TAA-C-C-C-CACAGCCGTGTGAGACTAACGATATATAAACGAC-C-AA-AT-TTACCAACACGAAGAGTCGG-TT-TTCG-AGATAC--TTTTAGGCCAAGTC-A-G-TTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCGTGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAC-----GAATTTGTAATAGTGACAACTTT-AGAAATTGAACTTACAGTAACTTTAGAAATTGTACATGTGGTAACTTTGTATTAGACTTGTAATAACTTTAGATTGAATTTATAATAAACACTTGTAATCTCAACAAA-TTTGTGAA-C-TTGTATTTTC-AACCTCAt
gi|12 : TACCGCT---TCATCTGACCTATTTATCAA-AA-CGTCTC-----ATTAACCA-CAA-G-GAAGGTGAATTTT--CACATGT--AGTGACCGTTTTGGCAATT-----AGACAA-ACAAATTATCAACGCTAT-TGACTGGTAACAGGCGGACG-----ACTGGCGTAGTAA------TGTA----CAGATATCATCCTTA-----CT--A-----GTA-------------AAACA---TG-G-GAGC-----ATCTAA-CAATTAGCAAATAATAAA--AGTTATTAATGATCT-------AAA---CAA-CAT-T-GACAGCCGTATGGGGAAATCTGTATACAAGAAAC-C-CATTT-TTACCAATGC-GTAAGTCTG-TT-TTCG-A-ACAT--GTTTAGGGCTCGT
gi|13 : TCG-ATATAC--TTTTAGACCTCATC-A---CTTTGATGAAACTCAATTAGA-TTGCG-CCG--------------------TCGTGAACATTAGAAGTGAAGTTA-GAAAT-TAAACTTGTGACA--AATT-TA-GGAA----TTGAA------------------------TTTATAATAGTGATTACTT--AGAAATTTAACTTAAGATAACTTTAGAAATTGGACTCGTTAGAACTTTAAGTTAGACTTGTAATAACTTTAGATTAAATTTATAATAAACATTTATAATCTCAGCTAA-TTTGTGAA-TATTGTATTTCA-ACCCTCAatattccctcaaacaaaattggtttacgtcgcttgtgagcagt
gi|14 : CG-C-G--------------------TAGTAGTCAGT-----T-AAGTTA-GAAAT-TAAACTTGTGACA--ACTC-TA-
gi|14 : AGAAAT-TGAACTCGTAATA--ATTT-TA-GAAA----GTGTGA---TAACT---TT-G-----GAAATTGAATTTGTGATAACTTT-AGAAATCGAACTTACAATACGTTTAGAAATCGGCCTTGTGATAACTTTAAATTGGACTTGTGATTACTTTAGATTGAACTTATAATAAACATCAGTAACCTCAGTTAA-CGTGTGAA-C-TTGTGTTTgaaattgaactcgtaataattttagaaagtgtgataactttggaaattgaatttgtgataactttagaaatcgaacttacaatacgtttagaaatcggccttgtgataactttaaattggacttgtgattactttagattgaacttataataaacatcagtaacctcagttaacgtgtgaacttgtgtttt
gi|15 : cgcgtagtagtcagttaagttagaaattaaacttgtgacaactctCAACAGTGTATTTATAAGAGT-AGAT-TGGATTTCTAT----------------------------------------AATAA-----ATT--------AAAAC----TTAC----AC------AAATT-AA----------AA---A----------CTCGCAT----AAAAA--TAC----------CAAATACGGGACA---G--TA---CGCCGCTTCACCTGACTCATTTATC-A-AA-CGTCTC-----ATTAACAA-CAA-G-GTAGGCGAATTTG--AACt
gi|16 : ataaggacatatttggaATTTATAAGAGTA-----AATTG-AATTTCTATAATAA---ACT--AAA-ATCTTACACAA--ATTAA--TACTCCAAACGGAACAACACGAAACACAGA---ATAC-GCT---TCATCTGACATATGTATC-AAAA-GGTCAC-----ATTAACCACC-A-A-GTGGGCGAA---------AGAG--TG--ACCACTACGCCAATTAA-TAAAACAAGAAAAACAGTCACAtttgatgaaactaaattacgaaatactgaat
gi|17 : CAGGAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGC-----------------A-----------------AGACTTATTTGGATTTCTGTAGCAATACTGATTGATAAGAATG-----AAATG-AA----------GA---A-T--AAA-AGCTTGCAT-A--AAAAA--TGC----------AGAATATACAGCA---ATTTGTACCGCCGC-TCACtcaaa
gi|18 : acaaagtAACTTTAGAAATTGGACTTGTTATAACTTTGAATTAGACTTGTGATGATTTTAGATTGAATTTATAATAAACATCAATAATCTCAGTTAA-CTTGTGAA-C-TTGTGTTT-T-ATTATCATTAt
gi|19 : tagcaattaataaagttgttgatgatgaaTAAAACAA-ACAAACTTTCACCACTAA-TGGCTGACA--A--CGGGCG-----GGTGATACATGTAATAATTGCTAAAACAAAGTA--GATGTAT-----CC--TTACTAGT--------------AAA-A---CGTGGGAGC-----ACCTAG-CAATTAGCAATTAATAA---AGTTG-T--TGAT-GATG---AAAA---Ccgc
gi|2 : aaCAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGCATTCAGTATTGATTTATA-----------------AGGATGATTTGGATTTCTGTAGT-------ATTCA-AAAAACGCACACAAATG-AA----------AA---A-TA-AAA-AGCTTGCAT-A--AAAAA--TAC----------AGAGCACGGGGCA---A-TTATACCACCGC-TCATATGACCAATTTGTC-A-AA-TGTCTC-----ATTAACTA-----------GCGAGCTCG--CACATAC--TGC-ACCGTCATGGGAATTAGC--GAGCGG-AGAGGTTGTCACAGCTGA-TGGTGGACAAT----GGATG-----CGTGATGCATCTA------GTT-----AAAATA--GACGTTG-----GT--T-----GT--------------AAGCA---CA-GCCAACAAT-TAACAAG-CAATTAGCAATTAATATG--GGTTGTT--TTAT-TGCG---AAAT---CAA-C-TCT-GACAGCTGTGTAAAACTAAC-GTATATAAACGAC-C-AA-AT-TTACCGACACAGGGAGTCGGAAA-TTCG-ATATAC--CTTTAGACCAGTTC-A---CTTTGACGGAACTCAATT-AGACTGCG-C-G--------------------TCGTGAACATT-----T-AAGTTAAGAAAT-AAAACTTGTGATT--ACTT-TA-AGAA----CTAAAA---CAACT---TTAG-----AAATTTATAAACGTGATAACTTT-AGAAATTGAACTTACAGTAGCTTAAGAAATTGGATTCGTCATAACTTTGAATTAGACTTTTAATGATTTTAGATTGAATGAATAATATATATTTGTAATCTCAGCTAA-TTTGTGAAGT-TTGTATTTCT-ACCCTCATTt
gi|20 : acaaagtAGGAATCCAACA-TGGATTTATAAG-AC-AA--------TTCTGTA----------------------------------------------------------GCAATACGGATTTATAAGAATG-----AAATG-AA----------TA---A-T--TAA-AGCTT
gi|21 : caaagtaGGAATCCAATA-CAGATTTATAAGAGT-AGAT-TGGATTTCT
gi|22 : aaaagcataatgtaacatagttgACATCAGTAATCTCAATTAACTTTGTGAA-C-TTGTGTTTaataaaacaaa
gi|3 : CAGAAATCCAACA-TGGATTTATAAGAAT-AATT-TGGATTTCTGTAGC-----------------A-----------------AGAATAATTTGGATTTCTGTAGCAATACGGATTTATAAGAATA-----AAATG-AA----------AA---A-T--AAA-AGCTTGCATAA--AAAAA--TGC----------AGAATATATGGCA---ATTTGTACCGCCGC-TCACTTGATCTATTTATC-A-AA-CAACTC-----ATTAGTCA-C-G-G-ACAGGCGTATCCA--CATACAT--CGC-TCCGCCATAGCAATAAACTAAAACAA-GGAACCTGTCACAGCTAA-TGG-TGGTAATA--CGGACG-----CGTGATACATTTA------GCTA----AAAATA--AACGTAG-----GA--T-----GT--------------AGGCA---CG-ACCAGCAAT-AATCAAG-CAATAAGCAATTAATAAG--GGTTGTT--TTAT-TGCG---AAAG---CAA-C-T-T-GACAGCCGTGTAAGGCTAACGATTTATAAACGAC-C-AA-AT-TTACTAACACGAGGAGTCGG-TT-TTCG-ACATAC--TTTTAGGCTACGTC-A-GTTTTTGACGGAACTAAATTAAAACTGCG-C-G--------------------CCATGAACATT-----T-AAGTTAAGAAATAAAAACTTGTGATA--ACTT-TT-AGAA----CTGAAA---CAACT---CGAG-----GAATTAATAATGGTGATAACTTT-AGAAATTGAACTTACAGTACCTTTAGAAATTGTATTTGTGGTAACTCTGATTTAGACTTGTAATAACTTTAGATTGAACTTATAATAAACATTTGTAATCTCAACTAA-TTTGTGAA-C-TTGTATTTCC-AACCTCATTAtatgcttat
gi|4 : CAGGAATCCAACA-TGAATTTATAAGAAT-CATT-CGGATTTCTGTAGC-----------------A-----------------AGAATA-----------------------GATTTATAAGGAAG-----AAATG-AA----------AA---A-T--AAATAGCTTGCATAA--AAAAAAATGC----------AAAGTACACAATA---ATTTGTACCGTCGC-CCACTTATCCTATTTAGC-A-AA-CAACTC-----ATTTGTCA-C-G-G-ACATGGGTATTCG--CATATAT--CGC-TCCACCATAGCAATTAACTAAAAC-A-AGAATCTGTCACAACTAA-TGGTGAGCA-TG--CGGACG-----CGTGATACAGTTA------GCTA----ACAATA--GACGTAG-----GA--T-----AT--------------GGGCA---CG-GCTGGCAAT-TAACAAG-CAATAAGCAATACATAAA--GGTTGTT--TTAT-TGCG---AAAA---TAA-C-T-T-GACAGCCGTGCGAGGCTAACGGTATATAAACGAC-C-AA-AT-TTACAAACCCCGGGAGTCGG-TT-TTCG-AGATAC--TTTGA-ACTATGTCAA-A-ATTTGACGGAACTAAATTAAAACTACG-C-GCACTAAATTAAAACTGTGCTCCGTGAACTTT-----T-ATGTTAAGAAATAGGAACTTGTGATT--A-TT-TATAGAA----CTGAAG---CAACT---TTAG-----GAA-TTGTAATGGTGATAACTTT-AGAAACTAAACTTATAGT-ACTTTAGAAACTGTACTTGTAGTAACTTTGACTTAGA------------------TGAACTTGTAATAAACATTTATAATCTCA---AA--TTGTGAA-C-TTATATTTAT-ACCCTCATT
gi|5 : aacaaagtCAGGAATTCAATA-TGGATGTATAAGAAT-AGAT-TGGATTTCTGTGGT-----------------A-----------------AAAAAAAC----------GTA----CACAAATT-----------------ATA-AA----------AA---A-----AA-AACTCCCATAA--AAA----TTC----------A-AACACGGGACA---ATT-ATACCACCGC-TCACCTGACCCATTTGTC-A-AA-TGTCTTATTAGATTAGCTA-CAA-G-GCAGGCAAGTCCG--TACATAT--TGC-ACCGTCATTACAATTA--TAAAACGG-AGAAATTGTCACAGCTAA-TGG-TGG--ATA--CGGGCG-----CGTGATGCACTTA------GC------AAAGTA--GATGTCGTTCTTAC--T-----AT--------------AAAAA---C--GTTGGCG---CATCTAA-CAATCAGCAATTAATTAA--AGTTG----TTA---ACGATCAAAA---CAA-CTT-T-GACAGCCGTGTAAAACCAACGGAATATAAAGGAC-CTGT-TT-TTACCTGTACGGGGACTCGG-AT-TTTG-ATATAC--TTTTAGGCCTCGTT-ACG-TTGT--CGAAACTAAATTAGAA-TAAGTC-A--------------------TGGTGAACATT-----T-AAGTT-AGAAAT-TAAACTTGTGATT--ACTT-AA-GGAA----TTGTGG---CAACT---TTAGGAATTGAATTTATAATAGTAAT-ACTTT-AGAAACTGAGCTTACAGAAACTTTAGAAATTGGACTCGTTATAAC------TTAGATTTGTAATGACTTTAGATTGAATTTCTAATAAACATTTATAATCTCAGCTAA-CCTGTGAA-T-TTGTATTTCC-ACCCTCATTA
gi|6 : taacaaagtCAGGAATCCAATA-TGGATTTATTAGAAT-ATAT-TAGGTTTCTGTAGT-----------------A-----------------GT--TAATT-GGATTTCTGTAGTAGTA-GTAGTTA--AAAACGT----ACAC---A----------AATTTA-T--AAA-ACCT--CA-------------GC-----------GAATACGA--CA---ATTTATATCGCCGC-TTACTTGATCCATTTGTC-A-AA-CGTCTC-----ATTAGCTA-C-G-GCACAGGTGGACCCGTGCACAT-T--TGC-ACCGCCATGGCAATTAAC-AAAACAC-AGAATCTGTCACAGCCAA-TATTTGACAAT----GGACG-----CGTGATGCATTTA------GCTA----AAAATA--GACGTGG-----GT--C-----AT--------------AGGCA---CA-GCCTACAAT-TAGCAAAACAATTAGCATTTAATAAG--GGTTGTT--TTAT-TGCG---AATA---CAA-C-T-TTGACAGCCGTGTAAGACTAACGGTATATAAACGAC-C-AA-AT-TTACCGACACAGGGAGTCGG-AAACTCG-ATATAC--CTTTAGGCCACGTC-A-T-TTTTGACGGAACT-----------GCG-C-G--------------------TCGTAAACATT-----T-AAGTTAAGAAAT-AAAACTTGATATT--ACTT-TA-AGAA----CTGAAA---CAACT---TT-T-----GAATTTGTAATGGTGATATATTT-AGGAATTGAACTTGCAGTAACTTTAGAAATTGGATTCGTCGTAACTTTGGATTAATCTTTTAATGGCTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTTATGAA-C-TTGTATTTCT-ACCCTCA
gi|7 : agtCAGGAATCCAATA-TGGATTTATAAGAAT-AATC-GGGATTTCTGTAGC-----------------ATTCAATATGGATTTATAAGAATGATTTGGATTTCTGTAGTA-TAAAAA---A-AAGTACAC----AAATG-CA----------AA---A-C--AAA-AGCTTGCATAA--AAAA-----C----------AGAACACGGGGCA---ATT-ATACCACCGC-TCATATGACCCATTTGTC-A-AA-TGCCTC-----ATTAGCTA-----------GCGAGATCG--TACATAC--TGC-ACCGTTATGGCAATTAACGAGA--GG-AGAGATTGTCATAGCCAAATGG-TG--AATAA-TGGGTG-----CGTGATGCACGAA------GCTA----AAA-TG--GATGTCG-----TTCTT-----GC--------------TGGTAATGCG-G--AG--GTGCATCTAA-CAATTAGCAATTAATAAA--GGTTGTTAATAAT-C------AAAA---CAT-C-T-T-GACAGCCGTGTGAAACGAACGGTATATAATAGAC-C-CA-TTCTCGCCTGTACTGGGAGTCGG-TT-TTCG-AGACCG--ATTTAGGCCTCGTC-ACG---TTGACGAAACTAAATTAGAA---TA-A-G--------------------TCGTGAGCATT-----T-AATTT-AGAAAT-TAAACCTGTAATT--ACTT-TA-AG-A----TTGTGA---CAACT---TAAG-----GA--TTG-AAT--TTATAA---T-AG----TGA--------TAACTTTAGAAACTGGATTCGTCATAACTTTGAATAAGACTTGTAATGACTTTAGATTGAATTTATAATAAACATTTGTAATCTCAACTAA-TTAGTGAA-C-TTGTATCTCT-
gi|8 : aagtAGGAATCAAATATGGATTTAT----------------------A-----------------AGAATAATTCGGATTTATGTAGCAATACGGATTTATAAGAATG-----AAATGAAA----------AA---A-TA-AAA-AGCTTGCAT-A--AAAAA--TGC----------AGAACACGGGACA---A-TTACACCACCAC-TCATATGACCCATTTGTC-A-AA-TGTCTC-----ATTAACTA-----------GCGAGCTCG--CACATAC--TGC-ACTGTAATGACAATTAGC
gi|8 : acaaagtcCG-----CGTGATGCATTTA------GCTA----AAAATA--GACGCTG-----GT--T-----GT--------------AGGCA---CA-ACCAACAAT-TCACAAA-CAATTA-------ATAAG--GGTTGTT--TTAT-TGCG---AAAAAAACAA-C-T-T-GACAGCCGTGTAAGGCTAACGGTGTATAAACGAC-C-AA-AT-TTACCGACACAGGAAGTCGG-TT-TTCG-AGATGCCTTTTTAGGCCACGTC-A-G-TTTTGACGGAACTAAATTAAA-CTGCG-C-G--------------------TCGTGAACATT-----T-AAGTGCAGAAAT-AACACTTGTGATT--ACTT-TA-AGAA----CTGAAA---CAACT---TTAG-----GAATTTGTAATGGTGATAAC-TT-AGAAATTGAATTTACTGTAACTTTAGAAATCGGACTTGTTGT-ACTTT------------TAATAACTTTAGATTGAACTTATAATAAACATATGTAATATCAACTAA-TTTGTGAA-C-TTGTATTTCC-CACCTCgcaaccgcgtgatgcatttagctaaaaatagacgctggttgtaggcacaaccaacaattcacaaacaattaataagggttgttttattgcgaaaaaaacaacttgacagccgtgtaaggctaacggtgtataaacgaccaaatttaccgacacaggaagtcggttttcgagatgcctttttaggccacgtcagttttgacggaactaaattaaactgcgcgtcgtgaacatttaagtgcagaaataacacttgtgattactttaagaactgaaacaactttaggaatttgtaatggtgataacttagaaattgaatttactgtaactttagaaatcggacttgttgtacttttaataactttagattgaacttataataaacatatgtaatatcaactaatttgtgaacttgtatttcccacctc
gi|9 : acaaagtcaggaatcaaatatggatttataagaataattcggatttatgtagcaatacggatttataagaatgaaatgaaaaaataaaaagcttgcataaaaaatgcagaacacgggacaattacaccaccactcatatgacccatttgtcaaatgtctcattaactagcgagctcgcacatactgcactgtaatgacaattagcgcaacAAT-AAA----GATTTAT----------------------A-----------------AGAACAGATTGGATTTCTGTA---------ATT------AACAT----ACAT--------------AA---A-TTAAAA-AACTCCCATAA--AAA----TAC----------AGAACATGGGACA-----TTATACTGC----TCACCTGACCCATTTACC-A-AA-CGTCTC-----ATTA-CAA-CAA-G-GCAGGCGGATTCG--TACATATAATG--ACCATCATGGCAAATAA-TAAAATGG-AGAAATTGTCACAGCTAA-TGGCTGATAAT----GGGCG-----CGTGGTGCACTTA------GC------AAAGTA--GATGTCGTTCTTAC--TA----GTA-------------AAACG---TG-GGC-GC-----ATCTAA-CAATTGGCAATTTATAAA--AATTG-T--TTAT-GATC---AAAA---CAA-T-T-T-GACAGCCATTTGAGACTAACGGTATATAAGAGAC-C-CATTT-TTACCTATACAGGGACTTAG-AT-TTCG-A-ATACT-TTTTAGGCCTCGTT-A---CTTTGTCGAAACTAAATT-AGATTACGCC-G--------------------TTGTGAATATA-----T-AAGTT-AGAAAT-TGAACTTTAGATTGAATTTATA-ATAAACATCTATAATCTCAGCTAACTTAT-----GAATTTGCA