lowQualScore : 111111111111111111111
lowQualScore : 222222222222222222222 111 3333333 1111111 111111111111 11 111111111111 11111 11 111111111111 111 222 1 1 11111 11111 111 1111111 2222222222 333333333333333333333 3333333333333333333 1 11 1111 11111 9999999999999999999999999999999999999999999999999999999999999999999999999 1
lowQualScore : 000000000000000000000 7 0 5 5 44 33 88888888888 5555555 44444 1 77 4 777 1 55 1 4444 77777777 1111111 9999999 2 0 333 22 3 5555 8888888 2 000000000000 2 333 55 555555 999 2 222222222222 2 2 22 0 55555 55 666666666666 333 2 777 0 22 55555 8 2 22 5 2 9999999 2 2 2 11111 2 2 55555 9 555 2 2 222 666666 8 333 5555555 4444 3333 88888 6666666666 0 88 2 1 3 1 222222222222222222222 1 4444 8888888888888888888 4 0 2 2 4 2 88 2 33 55 88 6666 2 44444 99999 11 22 4 1 1 7 333 0000000000000000000000000000000000000000000000000000000000000000000000000 6 7
lowQualScore : ..................... . . . . .. .. ........... ....... ..... . .. . ... . .. . .... ........ ....... ....... . . ... .. . .... ....... . ............ . ... .. ...... ... . ............ . . .. . ..... .. ............ ... . ... . .. ..... . . .. . . ....... . . . ..... . . ..... . ... . . ... ...... . ... ....... .... .... ..... .......... . .. . . . . ..................... . .... ................... . . . . . . .. . .. .. .. .... . ..... ..... .. .. . . . . ... ......................................................................... . .
lowQualScore : 000000000000000000000 0 8 7 7 22 88 33333333333 4444444 22222 6 00 8 666 7 22 9 5555 66666666 1111111 4444444 1 7 777 99 4 6666 2222222 0 222222222222 0 555 55 888888 444 0 222222222222 0 0 88 1 99999 88 444444444444 333 2 888 9 99 33333 1 1 99 8 0 2222222 1 2 1 00000 2 2 66666 0 222 2 2 555 111111 2 777 3333333 0000 6666 77777 5555555555 2 22 2 9 8 9 444444444444444444444 9 0000 0000000000000000000 0 2 9 8 9 0 33 0 22 00 88 5555 0 88888 00000 99 00 2 5 6 8 777 2222222222222222222222222222222222222222222222222222222222222222222222222 0 0
consensus : NNNNNNNNNNNTCATTTAT----TTGAGTTCATCGACA--CCGTATTATAT-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTG--------AAC-GCT-CGCGT-------ATT-CACGC---AAAATC--TCGCAATATCT---CGTTTTC-----AAT-T------------ATC-TTAACT---TCCATTCATCTC------AGGA--A-CA------------CAA-ATCAAA-ATTC--TTACA---TTGCAGAA-TGAAATT--C-T-CA-TC-AAA-ACAATACCA-ATTCCCAGCAAT--TTGTGTT-----TAA-AAT--TGTTGAAGTACTTNTGATTA-CAAAAT----TTGTATACTG-CAGCT-AAAATAA-CAA-C-A-AA-TTA-CGA---GAAATTTTA--CTTCA-AA-CCTC-AAT------ATCTT---TAA-----TT----CAAG---ATC----ATTTTGC-GTG----ATCGAAACATGTTTA-A-A-CAT-------C-T---AA------GATTA-C----ATACAA-----C-T--TACA-N---TTT-ATGTACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATTTGCCAAA-T-NAT-TAAT-CCTT--CGTGTGCTATTTTA--T-C-----AACATTTAGTCAGGAGA--TGCAAGTTTCCTATCCT--TCTATATA-A-GTCCTTG---AT----TTT--A--CATAT-----NGTG-------ACTC-GATGACTTCGTCAAATT-AATNTAAAAT-ACTG--TTTTATTGAC
Reference ( gi|3 ) : AAATGCATTGATCATTTATCAATTTG-GCTCATTAAAATTCCATATTATAT-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTG--------AAC-CCC-CACGT-------ATT-CATGC---AAAATC--TCGCAATATCT---TGTTTTT-----CAT-T------------ATC-TTAACT---TCTGTTCATCTC------AGGG--A-CA------------CAA-ATCAAA-ATTC--TTACT---CTGCAGAA-GGAAATT--A-T-CA-TA-AAA-AAAATACCA-ATTCCCAGAAAT--TTGTGTT-----TTA-AAT--TGTTGAAGTACTTTTGATTA-CAAAAT----TTATATACTG-CAGCT-AAAATAA-CAA-C-A-AA-TTA-CAA---GAAACTTTT--CTTCA-AA-CCTC-AAT------ATCTT---TCA-----TT----CAAG---ATC----ATTTTGC-TTG----ATCGAAACATGTTTA-A-A-CAT-------C-A---AC------GATTA-C----ATACAA-----A-T--TA-A-G---TTT-ATGTACAAGAAATCAGTTGCATGTGAATTATGAATGATTAATTTGCCAAA-T-TAT-TAAT-TCTT--TGTGTTCTATTTTC--T-C-----AACATTTAGCCAGCAGA--TGCAAGTTTCCTATCCT--TCTATACA-A-GCCCTTG---AT----TTT--A--CATAT-----GGTG-------ACTC-AATGATTGCGTCAAATT-AACTCAAAATGAATGCATTTCAATGACTGAATTTAAGCATCAGATTTGTAGATAAAACACTGCACAGTAT
gi|5 : TCATTTAT----TTGAGTTCATCGACA--CTGTTTTATATATAA-A-----AA-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AAAG-TT----TGTG--------AAC-GCT-TGCGT-------ATC-CACGT---AAAATC--TTGTAATATCT---CATTTTT-----AAT-T------------ATC-TTCGCC---TCCATTTATCCC------AGGA--A-CA------------CAA-ATTACATATT---TTACA---CTGCAAAA-TGAAATT--G-C-AA-TC-AAA-ACAATACC--ATACCC-GAAAT--GTGTGTT-----TAT-AAT--TGCTGAAGTCCTTGTGATTA-C-ATAT----GTGTATACTG-CAGCT-AATATAA-CGA-C-A-AA-TTA-C-----GAAATTTT------------CCTC-A-----------TT---T-------------------------------TGC-GTG----ATCGAAACATGTTAA-A-A-CAT-------C-T---AG------GATTA-C----ATACAA-----C-T--TACA-G---TCT-ATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTTATTCA-CAAA-T-TAC-GAAT-CTTT--TGTGTGCTGTTTTA--T-C-----AACATATAGTCAGGAGA--TGCAAGTTTCCTATCCT--T
gi|13 : gatactgttgatcatccggctttggattaaattttagatttttaacCATAT-A-AT-TAA-TTTATTAT-CAAGAACAGAGAGTCGTATCATATACACTTATACTA-----AG-G--ACA-G-GCAACTG-ATTG--AGGT-----------------------------CAT-------ATT-CACGC---TAAAT-------AAT--------GTTTTC-----AAT-G------------ATC-TTAACTTTTTCTTTGCATTT----------------A------------TAA---CGAA-ATTC--TT----------------------------TA-CA-AAA-CAAA-ACCA--TTCATAGTAAA--TTGTGTT-----TAC-AAT--TGTTGAAGTACTCATGATTG-CATAAT----TTGTATACTGACACTT-AAAA-AA-CAAGA-A-AA-GTA-CTT---GAAATCTCA--CTTCA-AA-CCGC-AAT------GT--------AAGAAGTT----CAAT---ATT----ATTTTG----------------TATGTTTA-AGA-CAT-------C-T---AA------GGTAA-C----ATACAG-----C-T--GACA-T---TTT-AAGCATAAGAATTCAGTTTCATGTGGAATCTGAATGATTAAAATACTAAT-T-TAT-TAGT-TCTT--CCTGCACTATTTTA--T-C-----AACATTgataaaaataaacaaatattaaaataaagttatgttatataaatcaatttatattttattactacgaataac
gi|30 : gtatccaccttgtctacagatttattttttgtATATCTTAT-TA--TTT--TGCACAAAGA-----------CTTATATGGAG-------A-----AG-G--A-A-ATGCAACTC-GTTT--ACGT-TTGAAATATA--------A----CT-AGCGT-------ACT-CATGCGTAAAAATgacgtgtcatgtatat
gi|4 : ttTATTATGT-TCA-TTT------CAAGGA-----------ATTACATAGAG-------A-----AG-G--A-AAG-GCAATTG-ATTG--ATAT-TT----TGTG--------AAC-GTT-CGCGT-------ATT-CATGC---AAAATT--TCACAATATCT---CGTTTT------CAT-T------------ATC-TTAATT---TCCATTCATCTC------AGTA--A-CA------------CAA-ATCAAA-GTTC--TTACA---TTGCAGAA-TGAACTT--C-T-CA-TA-AAA-AAA----------------------TGTGTT-----TAA-TAG--TGTTGAAGTACCTCTGATTA-CAAAGT----TTGTATACTG-CAACT-AAAATAA-CAA-C-A-AT-TTA-CAA---G-AACTTTT---------A-CTT---------------------------------CAAG---ATA----ATTTTTC-GTG----ATCATAACA-ATTTATT-A-CAT-------C-T---AA------GATTA-C----ATACAA-----C-T--TACA-T---TTT-ATGTACAAGTAATCAGTTGCCTTTACACTATGAATGGTTAATTTTCCAAA-T-AAC-TAAT-CCTTC-TGTG--CTATTTCA--T-C-----AACATTAAGTCAGGAGG--TGCAAGTTTCCTATCCT--TCTATATA-A-GTCCTTG---GT----TCT--
gi|1 : taacacgtagttaagtcacacgtgtacacaaataatgtacatactcgctgaaataaaatgatatttcaccggaacctatATGT-TAAATCT--TAT-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATGCAACTG-ATTG--A-ATGTT----TGTG--------AAC-GCT-CGCGT-------ATT-CACGT---AAAATC--TTGCAATATCT---CGTTTTC-----AAT-T------------ATC-CTAAAT---TCCATTCACCTC------AGGA--A-CA------------AAA-ATCAAA-ATTC--TTTCA---TTGCAGAA-TGAAACT--C-T-CA-TC-AAA-ATAATACCA--TTCCCAACAAT--TTGCGTT-----TAA-AAT--TGTTGAAGTGAATCTGAATA-CAAAAT----TTGTATACCG-CAGCT-AAAATAA-CGA-C-A-AA-TGAACGA---GAACTTTTC--CTTCA-AA-TCTC-AAA------ATCTT---TAA-----TT----CAAG---ATC----GTTTTGC-ATG----ATCGAAACATGTTTA-T-A-CAT-------C-A---AA------GATTG-A----ATACAA-----C-T--TACA-G---TTT-ATGT-TAAGAAATCAACTGCCTGTGAGTTATGAATGAGTAATTTGCCAAA-T-AAT-GAAT-CCTT--CGTGTGCTGTTTCA--T-C-----AACATTTAGTCAGAAGA--GACAAGTTTCCTATCCT--TCTATGCA-A-GTCCTTG---AT------------CATAT-----tttgaagtgtattttggatatacatcataaaacgagtaataaaagattcattgttaaaaattccaggtcattcc
gi|15 : catttatggaacatgaatgacaaaatcgtagatattaagtttaatgacgaagttatgtcacaaAT-TAA-TTA--TAT-TATATA-----------ATTATATAGA---------------------------CA-C---ATTG--AGAT-GT----TATG--------AAC-ACA-GGGGT-------ATT-CATGC---ATTATG--TCGCCAAATCT---CGTTTTC-----AAT-T------------ATC-CTAACT---ACCATTCATTTT------GGAG--G-TA------------CAA-ATC-AA-ATTA--TGTCT---TCGCATAA-TGAAA-T--A-T-CGCTATAAA-ATGACACC--ATTCCCAGCGAA--TTGTGTT-----TAA-ACT--TGTTGAAGTACTTGTGA--A-TAAAG--------------G-------AAAAT-A-C----------TT--------GAAACTTTA--CTTCA-AA-CTGCAAAT------AT-TT---TAA-----TT----CAAGTGCAT-----ATTTTG---TA----TTCAAAACATAAAAA-A-A-CAT-------C-T---AA------GGTTA-T----ATAATG-----C-T--TACA-T---TTT-GTGTATAAGAAATATATTGC----CAGCTGTGA------AATTTGTCGCA---TGC-TA----CTT--TAT---------------C-----AATA-TTAG--AAGAGAGATGCAAGTTTCCTATCCT--TCTATATA-A-tgagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|6 : aatttgaatg-TGA-CTT--TATTCTAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATACAACTG-ATTG--AGAT-TT----TCTG--------AAT-GCT-TGCAC-------ATT-CATGC---AAAATC--TCGCAGTATCT---CATTTTC-----AAT-T------------AAC-TTAACC---TCCATTCATC-------------------------------------AAA-ATTC--TTGCT---TTGCAGAA-TGAAATT--C-T-CA-AC-GAA-CCAATACCA--TTCCCAGCAAT--TTGAGTT-----AAA-AAT--TGTTAAAGTACTCCTAATTA-CAAAAT----TTGTATACTG-CAGGC-AAGATAA-CAA-TGA-AA-TTG-TGA---GTAAATTTA--CTTCC-AA-CCTC-AAT------ATCTT---TAT-----TT----CAAG---ATC----ATTTTAT-TTG----ATCAAAGCATATTAA-A-A-CAT-------C-T---AA------GATTA-C----ATACAA-----T-T--TACA-G---GTT-ATGTACAAGAAA-CAGTTGCCTGTGAATTCTGAATCATTAATATGCCAAA-T-AAC-TAAT-CCTT--TGTGTGCTATTTAA--T-C-----AACATAAAGTCAGAAGA--TGCAAATTTCCTATCCC--TCTATATA-A-GTCCTTattat
gi|34 : aaaatttaatctcttaaattgtattttgaaaaaaaccTC--TAC-CAAGGA-----------CTTATAT--AG-------A-----AG-G--ATA-G-GAAACTcctataatataatgttttatttctattatataaaatagtttctacttttaataaagcacatacaagcttgaatttaaaat
gi|9 : gagaggtgca--TAG-CAAGGA-----------CTTATAGAGAG-------A-----AG-G--A-AAG-GCAACTT-ATTT--AGAT-GG----TATG--------AAT-GCT-CGCAT-------ATT-CATGC---AAAATC--ACG--------------TTTT-----CAAAT------------ATC-AGGACT---GCCATACATCTC------ATAA--A-TA------------CAA-ATTAAA-ATGT--TTTCT---TTGCACAATGGAGCTC--C-T-TA-CA-AAA-TGAG-ACCA--TTCCCATCAAA--TTGTGTG-----TAA-AAT--TGTTGAAGTACTTATGATTA-CAAAAT----TTGTATACTG-CAACT-AAAATAT-TAAGG-A-AA-GTA-CTT---AAAATTATA--CTTCA-AA-CTGC-AAT------ATTTT---AAA-----TT----CAAG---ATC----ATTTTGC-GTG----TTTAAAACATA-CAA-A-A-CAT-------C-T---AG------GGTTA-C------ACAG-----A-TCCTACA-T---TTT-ATGAAAAAGAAATCAGTTGCCTGTGAA------------AATTAG--AAACT-TAT-TAAT-TCTT--AGTATGCTATTTTA--T-A-----AACATTTAGTAGAGAGA--TGCAAGTTTCCAATCCT--TCGATATA-A-GTCCTTgagaggtgcaagtttcctatccttct
gi|28 : atttgcacgaaataaaatataatataataatattatatttaataaactggaaatcatttattgacactaagcga--TAC-CAAGGA-----------ATTATATACAG-------A-----AG-GA-A-A-G-GCAGCTG-ACTG--AGAT-TT----TGTG--------AA
gi|41 : ta--TAC-CAAGGA-----------ATTATATGGAG-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ttgcttgctttactaaaaatagtccaaaacttaaaaaatcttcttctcttgaacggccc
gi|42 : --TAC-CAAGGA-----------ATTATATAGAA-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ta
gi|40 : --TAT-CAAGGA-----------ATTATATAGGG-------A-----AG-G--A-A-ATGCAAATG-a
gi|4 : aaacaAC-CAAGGA-----------CTTATAT--AG-------A-----AG-G--ATA-G-GAAACTtgtacactcgcg
gi|8 : taacacgtagttaagtcacacgtgtacacaaataatgtacatactcgctgaaataaaatgatatttcaccggaacctattattatgttcatttcaaggaattacatagagaaggaaaggcaattgattgatattttgtgaacgttcgcgtattcatgcaaaatttcacaatatctcgttttcattatcttaatttccattcatctcagtaacacaaatcaaagttcttacattgcagaatgaacttctcataaaaaaatgtgtttaatagtgttgaagtacctctgattacaaagtttgtatactgcaactaaaataacaacaatttacaagaacttttacttcaagataatttttcgtgatcataacaatttattacatctaagattacatacaacttacattttatgtacaagtaatcagttgcctttacactatgaatggttaattttccaaataactaatccttctgtgctatttcatcaacattaagtcaggaggtgcaC-TAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AGGT-TT----CGTA--------AAC-GCT-CGCGT-------ATT-CACAC---AAAATC--TTATAATATCT---T----------------------------------AACT---TCAATTCATCTC------AGGA--A-CT------------CAA-ATCAAA-CTTC--TAACA---TTGCAGAA-TGAAATT--C-T--A-TC-AAA-ACAATACCA--TTCCCAGCAAT--TTGTGTT-----TAA-AAT--TGTTAAAGTACTTCTGATTA-CAAAAT----GGGTGGACT--TAGCT-AAAATAA-CAA-C-A-AA-TTA-CGA---GAAATTTTA--CTTCA-AA-CCTC-AAT------ATATT---TAA-----TT----CAAG---ACC----ATTTT-------------AAAACA--TTTA-A-A--------------------------ATTG-C----ATACAACTG--ACT--TACA-T---TTT-ATATACAAGAAATCAGTAGCTTGTGAACTATGAAAGATTAATTTGCCAAA-T-AAT-CAAT-TCTTCGTGTGTGTTATTTTA--T-C-----AACATTTAGTCATGAAA--TGCAAGCTTCCTATCCT--TCTATATA-A-GTCCtcttttgaagtgtattttggatatacatcataaaacgagtaataaaagattcattgttaaaaattccaggtcattcc
gi|14 : tgattagtttacatttgcataatcaagacacttgtatgaataattcatgtatttataacaaaacaaacatttgacattcgaatgaactgagcccgtgtggttccgg-CAAGGA-----------ATTATATAGAG-------A-----AG-A--A-AAG-GCAACTG-ATTG--AGAT-TA----TGTG--------AAC-GCT-CGCGT-------ATT-CAAGC---AAAATC--TCGCAATATCT---CATTAAT-----AAT-G------------TTC-TTAACT---TCCATTCATCTC------AGGA--A-CA------------CAA-ATCAAA-ATTC--TTACA---CTGCAGAA-TGAAATT--G-T-CA-TC-AAA-ACAATGCC--ATTCCCAGAAAT--GTGTGGTAACAAT---AAT--TGTTGAAGTACTTGTGATTA-CAAAAT----GTGTATTCTG-CAGCT-AA----------------------------AAATTTCC--CTTCA-AA-CCTT-AAT------ATCTT---TAA-----TT----CAA------------------------------AAACA--TTTA-A-A--------------------------ATTA-C----ACACAA-----C-T--TACA-G---TTT-ATGTATAAGAAATCAGTTGCCTGCGAGTTATAAATGATCGATTTG-CAAA-T-TAT-GAAT-TTTT--CGTGTGCTGTTTCA--T-C-----AACATTTAGTCACGAGA--TGCAA
gi|2 : ttttgaacaggcatagaatttcctgcttttttttcattagcagttaaaagaca-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GTAACTA-ATTG--AGAT-TT-----GTG--------AAC-ACT-TTTTC-------ATT-TACGC---AAAATC--TTGCAATAT-----TATCTTT-----CAT-T-------------------------------TATCTA------GGGG--AACC------------CAA-ATCAAA-ATTC--TTACA---TTGCAGAA-TAAAATT--T-T-AA-CC-AAA-ACAAGACTA--TTCCCAGCTGT--TTGT--T-----TTATGAT--TGTTGAAATACTTATAATTA-CAAAAT----GTGTTTACTG-CAAAT-AAAATAA-CAG-----AA-TTG-CGA---GAAATTTTA--CT--A-AA-C------------------------------------AA--------------TTAC-T------ATCTAAACATATCAA-A-A-CAT-------C-T---AA------GATTA-C----ATACAA-----C-T--TA-C-G---TTTTATGTACCA-AAAGCAGTTGCCTTTGAATTCTGAATGATTAATTTACCGAA-T-AAT-TAAT-CCTT--TGTGCCCTATTTTA--T-C-----AACATTTAGTCAGGAGA--TACAAGTTTCCTATCCT--TCTATATA-A-GTCCTTG---AT----T
gi|20 : tagtcagccactatagagagatcttcagatctctcctgtatttttttttgatggggt-CAAGGA-----------ATTATATAGAG-------A-----AA-G--A-AAG-GCATCTG-ATTG--ATAA-TT----TGTG--------ACC-GCT-CGCGT-------ATT-CATGC---AAAATC--TCAGAATATCT---CGTTTTC-----AAT-T------------ATC-TTAACT---TCCGTTCATCAC------AGGA--A-CA------------CAA-ATCAAA-ATTC--TTACA---TTGTAGAA-TGAAATT--C-T-CT-TC-AAA-ACAATACC--ATTTCCATCAAT--TTGTGTT-----TAG-AAT--TGTTGAAGTACTTCTGATTT-CATAATCGCCTCATACATTG-gagtttaacatcattttcaacacatttcaggttatatgtggcatactcagttttattgctggaggataacttcagaataaatctgagtagaaccaccgtccttccactagcaacttaaagattttggagcgaacaggacctaatgattgtttattttaatata
gi|10 : agggtgagatttttatattccacaggatgaacttatg-CATGGA-----------CTTATATAGAG-------A-----AG-G--A-A-ACGCAACTG-ATAG--CGGT-GG----TATG--------AACGCTCGCGCGT-------ATT-CACGA---AAAAAAAATCGAGACATTT---CGTCTCC-----AAA-T------------GTCCTTAACT---TCAATTCATCTC------AGGA--A-CA------------AAATATCAAA-ATTC--TTCCT---TTGCACAA-CAAAA-C--A-T-TC-TACAAA-CCGAGGCC--ATTCACAGCAAC--TTGTGTT-----TAA-AAT--TGTTTAAGTACTTATGAATA-TAAAAT----GTGTATACTG-CCACC-GTAATCATCAA-G-G-AA---A-GAACTTGAAA-TTTA--CTTCA-AA-CTGC-AATCAAGGAAT-TCGAATTA-----TTGCTGCAAT---ATTTTAAATTTCAT-ATA----ATTAAAGCGTGTATA-A-A-CATAATAAAAC-ACATAA------GGTTA-C----ATAAAC-----C-T--TA-ACG---TTC-ATGTTTATGAA--CACTTGCCTGTAAAATTTGAATGATTAATT----ATA-T-TATATAAT-Tttttaataatagccttaaaatatatttttt
gi|21 : aataatatgtcgtttacaacaattgccgtttgtcttccctatctgattctcttggttagga-CAAGGA-----------ATTTTATAGAG-------A-----AG-GGAA-A-A-GCACCTT-GTTG--AGAT-TA----TGTG--------AAA-GCA-TTTGC-------ATA-CATGC---AAATTC--TTGTTGAATTT---TGTTTCC-----AAT-T------------ATC-TGGGCT---TCCAGTCATCTCATAGTAAAGG--A-TAGGGAGTGGGGAGGGA-AT-AAA-ATT---TTATTGCATTGCAGAA-TGAAATT--C-TCCA-TG-AAATGAGAT---A-ATTCCCAGCAAC--TTGTATT-----CAA-AAT--TGTatatagaca
gi|17 : ttcttatatacttatcaagacataaactaaattaaacattgtcaggttcaaaacagttgttgtttcaaa-CAAGAA-----------CTTGTATAGAG-------A-----AA-G--G-A-GAGCAACTG-ATTG--CGAT-TT----TGTATCACTCAAAAT-CAT-CTTGTTTTTTAAATTACATGT---AT--TC--T-----TATTTACATGTTTTTT----CAT-TTTATTTACATGGATT-TCATCT---TCCATTCTTCTT------AGGT--A-TG------------CAT-ACCAAA-ACTG--TGACA---TTACAGAA-GGAAATTTCACT-CA-TA-ATG-GGATCACC-----CCCAGTAATGCTTGTATG-----T---GAT--TGTTGAAGTTCTATGCATTA-CAAAAA----TTGTACACTA-CCACTAAAAACAA-GAA-C-AGAA-CTT-CTT---GAA--TTTTGACTTTA-AA--TTA-AAT------GTTTT---TAA-----TT----CAAT---ACC----ATTTT-------------GAAA-------A-A-A-CATTA-----T-A---AC------AAATATC----ATATAC-----A-C--TA-A-G---caa
gi|24 : ag-CAAAGA-----------ATTATGTTGAA-------ACAAATAT-A--A-A-A-TCAA-TGTATTG--AGAA-TT----TGTG--------AAA-GAA-TATGT-------ATT-TAC-C---AAATTT--TC-----ATTT---TG----------AAT-C------------ATC-TTAGCT---TCCAGTCATCGC------AGGATTA-TA------------CAA-AT--AA-ATTTTATTACT---TTGCAAAA--------------C-------------------ATTCCCAACAAT--TTTTGTT-----CAA-AATTGTGTTTAAATTCTATTGATTA-ccatataaatacacaacattattag
gi|48 : aaatggttt-CAAGGA-----------CTTATATAGAG-------A-----AGAA--A-A-A-GCAACTG-TTT
gi|18 : gagG-------A-----AG-A--A-A-G-GCTACCG-ATTG--ATAT-TT----TGTG--------AAC------------------------GC-----------TCACAATATCT---TGTTTTCAATAATAT-T------------ATC-TTAACT---TCCATTCATCTC------AGGA--A-CA------------CCA-ATCAAA-ATTC--TTGCA---TTGCAGAA-TGAAATT--T-T-CA-TC-AAA-ACAATA
gi|11 : cagtgataaatacattggcaataccaatG-G--A-A-A-GCAACCG-AATG--TGA---------GTG----------C-TTG-CATATT------ATT-TACGG---AAAATC--TAGTAATAACT---GGTTTTC-----CAT-G------------ATG-TTAACT---TCC-TTCATCTC------AGGA--A-CA------------CAA-ATCAGA-ATTC--TTACA---TTGCAAAA-TGAAATT--C-T-AA-TC-AAA-TCAATACCA--TTCCCAGCAAT--TTGTGTT-----TAA-AAT--TGTTGAAGTACTTCTGATTTTCAAAAT----TTGTATACAG-TAGCT-AAAATAA-CAA---A-AA-TTG-AGA---AAAA-TTTA--CTTCA-AA-CCTC-AAT------ATTTT---TAT-----TT----TAAG---ATC----ATTTTAC-AAG----ATCGAAACAT-TTTA-A-ATCAT-------C-T---AA------GATTA-C----ATACA----------------------------CCAAGAAATCAG----A---AAATTATGAATGACT-ATTTACCAAA-T-AAT-TAAT-CCTT--TGTGAGCTATTTTA--T-C-----AACAATTAGTAAGAAGA--TACAAG--TCCTATCCT--TCTATATA-A-GTCCTGGTTTAT----TTTTAA--CATAT-----TTTT-------ATTT-GACGACTTCA-CAAGTT-CATGCAAAGT-ACTG--TTTTATTGACtacaactaacattttatgtacaagaaatcagttgcctgcaaattatgaatgattatttaccaaataattaatccttcatgtgttatttaatcaacttttagtcagtagatgcaagtttcttatccatctatataagtccttggtgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|12 : gtggagggacagccTT-TACAC---AAAATC--ACGCAATGTCT---CCTTTTC-----CAT-C-------------------------------CATCTC------AGG---A-CAA-----------TAA-ATACAA-ATTC--TTACA---TTGCAGAA-TGAAATT--C-C-AA-TC-AAA-GCAATACCATAT--CCAGCAAT--TTGTGTT-----TAG-CAT--TAATGAAATAATTCTGATTT-CAAAAT----TTGTATACTG-CAGCT-AAAATAA-CAA-C-A-AA-TTA-CGA---GAAATTTTA--CTTCACAATCCGC-AAT------ATCTT---TCA-----TT----AAAG---ATA----ATTTTTC-GTG----ATCGAAACATTTTCA-A-T-CAT-------C-T---AA------GAATA-C----ATACAA-----C-T--TGCA-T---TTT-ATGTACAAGAAATCTGCTGCTTGTAAATTATGAATGATT-ATTTACCAAA-T-AAT-TAAT-CCTT--CGCATGCTGTTTTA--T-C-----AACATTTAG-----AGA--TGCAAGTTTCCTATCCT--TCTATATA-A-GTCCTTG---AT----TTA--A--CA
gi|16 : ATC--TCGTAACATCT---CGTTTTC-----AAT-T------------ATC-TT--------CCATTCGTCTG------AGGA--A-CA------------CAA-ATCAAA-ATTC--TTACA---CTGCAAAA-TGAAATT--C-T-CA-TA-AAA-ACAATACCA--TTCACAGAAAT--GTGTGTT-----TAA-AAT--TGTTGAAGTACTTTTGATTA-CAAAAT----AT-TATACTG-CGGCT-AAAATAA-CGA-C-A-AA-TAA-CGA---TAAATTTTC--CTTCA-AA-TCTC-AAT------ATTTT---TAA-----CT----CAAG---ATC----ATTTTAC-TTG----ATCGAAACATGTTTA-A-A-CAT-------C-T---AA------GAGTA-C----ATACAA-----C-T--TACA-G---TTT-TTGTACAAAAAACCAGATGCATGTGAAGTATGAATGATTAATTTGCCAAA-C-TCT-TAAT-CCTT--CGTGTGCTGTCTTA--T-CATTTTAACATTTAGTCAGGAGA--TGCAAGTTTCCTGTCCT--TTTTTACA-A-GTTCTTatcggtaggattacttatattaaaactgttgacgtcccataaaacgggcaatgcatgtcatatttacgat
gi|7 : ---TGTTTTT-----AAT-T------------ATC-TTCACT---TCCATTCATCTC------AGGA--A-CA------------CAA-AACAAA-ATTC--TTACA---CTGCAGAA-TAAAATT--G-T-CA-TC-AAA-ACAATACCA---TTGCGGGAAT--TTGTGTT-----TAA-AAT--ATTTTAAGTACTTCTGATTA-CAAATT----GTGTATACTG-CAGCT-AAAATAA-CAA-C-A-GT-TTA-CAA---T-AATTTTT--TTTCA-AA-CCTC-AAT------ATCTT---TAA-----TT----CAAG---AGC----ATTTTGT-GTA----ATTGAAACATGTTTT-A-A-CAT-------C-T---AA------GATTA-C----ATACAA-----C-T--TACA-G---TTT-ATGTACAAGAAATCAGTTGCCTATGAATTATGAATGATTAATTTG-TAAT-T-TAT-GAAG-CTTT--CGTGGGCTGTTTCA--T-C-----AACATTTAGTTAGGGGA--TGCAAGTTTCCTATCCT----TATACA-A-GTCCTTG---GT----TAT--ACTCATGT-----GCAG-------ATTC-A
gi|35 : AAGTACTTTTGATTA-CAAAAT----GTGTATACTG-CAACT-AAAAAAT-CAA-tgtcctatataagatcatttatcttcgtccatcacgaaaactgattgccatatataaccttttgggtgcgttgataatggtgttaaaccaagtagaaaaaaaaaaattatgaaagaactgtgaagcaaagtgccaaaatgtggtcatgtggaaatgatatgattgtga
gi|23 : TTCGATTA-CAAAAA----TTCTATTTGG-TCGCT-GAAA--A-CAA-C-ACAA-TTA-TTT---GAAATTTTA--CTTCA-AA-CTGA-AAT------ATTTT---TAA-----TT----AGGG---AC------TTTC----------ATCATAAAATATTCA-A-A-------------------------GATAA-C----AT---A-----A-T-----A-T---TTT-ATGTATAATAAATCAATTGTCTGTGAATTTTGAATAATTAAT-----------------AT-TTCT--TATG----------------------CATTTGGT---CAGA--TGCAAGTTTCCAATTCT--TCTATATA-gtgaagtacttgtgatt
gi|19 : TAG-TAA-T-A-AAGCTA-CTT---GAAATTTTA--CGTTA-AA-ATGT-AAT------ATTTT---TAA-----TT----CAAG---ATC----A--TTGT-TCAAT--ATCAAAACAT-TCTA-ATA-CAT-------CTA---AC------G-TTA-CCATGATACAATTTACA-T--TT-A-ACTTTTT-ATGTACAAGAAAGCCATTGTCTGTGAATTCTGAATGATTACTTTGCCAAA-T-AAC-GAAT-CCTT--TGTGTGTGATTTTTCAT-C-----AACATTTAGT-----------CAAGTTTCCTAACCT--TCTATGTA-A-AGCATTA---AT----TGT----------------GTG-------ACT---ATGA
gi|22 : ttataagtccttgatac-AAT------ATCTT---TAA-----TT----TAAG---ATC----ATTGTGC-GTG----ATCGAATCATATTAA-A-A-CAT-------T-T---AA------GGTTA-C----ATCCAA-------T--TACA-T---TTT-ATGTACAAGAAAGCAGTTGTCTGTGAATTCTGAAAGGTTAATTTGTCAAA-T--AT-TAAT-CATT--CGTGTGCTATTTTT--TTC-----AACATTTAGTCAGGATA--TGCAAGTTTCCTATCCT--TCTATGTA-A-GTGCTCG---GT----Tatcagtcgacgctgtgaaacagttcaccaggatgatttcaacatcttttaagaagaatccaaatcatata
gi|18 : aaataaaattaatataaaatCA-----AT----CAAA---AT------TCTTGCATTGCAGAAT-GAAAT---TTT------CAT-------C-A---A-------AACAA-T----ATACAA-----C-T--AACA-T---TTT-ATGTACAAGAAATCAGTTGCCTGCAAATTATGAATGATTA-TTTACCAAA-T-AAT-TAAT-CCTT--CATGTGTTATTTAA--T-C-----AACTTTTAGTCAGTAGA--TGCAAGTTTCTTATCCA--TCTATATA-A-GTCCTTG---GT----gcaaactgtgccaagtcgagatatatttgaaaaaaat
gi|25 : cagtgataaatacattggcaataccaatgaagaaaggctaccgattgatattttgtgaacgctcacaatatcttgttttcaataatattatcttaacttccattcatctcaggaacac-----TT----TAAG---ATC----AGATTGA-TTG----ATTGAAACACTATAA-A-A-CGC-------C-A---GTATTTTAGGTTA-C----ATACAA-----T-T--TA-C-A---TTTCATGTACAAGAAAGCAGATGCCTGGGAATTCTTAATAGTTAACTTGTAAAA-TATAA-TAATATTCC--CATG--CTATTTGA--T-C-----AACATTAAGTCAGGAGA--gaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|36 : ttttaggTTTCC--T--------ACATTTAGTAGAGAGA--TGCAAGTT-----TCCT--TCTATATA-A-GTC
gi|1 : acagagagatgcaag-----AACATTCAATCAGT-----TGCA--TTTCCT-TC----TCTATATA-A-TTCCTTG---ATAAGATTTA-A--CAT-T-----TGTG-------AC----ATAACTTCGTC--ATTAAACTTAATAT
gi|43 : catttatggaacatgaatgacaaaatcgtagAGA--TGCAAGTTTCCTATCCT--TCTATATA-A-GTCCTTG---AT----TTA--A--CAtgtgaacgctcgcgtattcacgtaaaatcttgcaatatctcgttttcaattatcctaaattccattcacctcaggaacaaaaatcaaaattctttcattgcagaatgaaactctcatcaaaataataccattcccaacaatttgcgtttaaaattgttgaagtgaatctgaatacaaaatttgtataccgcagctaaaataacgacaaatgaacgagaacttttccttcaaatctcaaaatctttaattcaagatcgttttgcatgatcgaaacatgtttatacatcaaagattgaatacaacttacagtttatgttaagaaatcaactgcctgtgagttatgaatgagtaatttgccaaataatgaatccttcgtgtgctgtttcatcaacatttagtcagaagagacaagtttcctatccttctatgcaagtccttgatcatattgagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|34 : AGG--TGCAAGTTTCCTATCCT--TCTATATA-A-GTCCTTG---GT----
gi|37 : gagAGA--AGCAAATTTCCTATCCT--TCTATATA-A-GTCCTTG---agagagaggtgcaagtttcctatccttct
gi|27 : gagAGA--TGCAAGTTTCCTATCCT------TATA-A-GTCCTTG---gatatgcaagaacaataagt
gi|44 : agagagAGA--TGGAAGTTTCCTATCCT--TCTATATATATGTCCTTG---cgtagagagagatgcaagtttcctatccttattagtccttaggtagagagagatgcaagtttcctatccttattagtcctt
gi|32 : agAGA--TGCAAGTTTCCTATCCT------TATT-A-GTCCTTG---
gi|47 : tagagagAGT--TGCAAGTTTTCTATCCT--TCTATggtagagagagatgcaagtttcctatccttattagtcctt
gi|26 : agtccttggtagagGA--TGCAAATTTCCTATCCT--TCTATATA-A-A--TTTA---AC----TGC-----CGAAT-----GGTG-------TTTC-AAT
gi|46 : GA--AGCAAGTTTCCTATCAT--TCTATATA-C-ATCCTTG---ccaaatgtttatataactgcagtttgtttcctgatttaatgattaaagcgattatataacaattatatcgatttatataataaaaggtaaactatgtac
gi|5 : gagtAGTTGCCTTTCCTTCTCTATATA-A-TTCCTTG---TT----TTT--A--TATATAAAACAGTGTCGATGAACTCAAATAAATGAGTTAAA---AATCTAAAAT
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|29 ): TAAGCCCATTTGAAGAGTGTAACGTAATTACATGTTATATTTGACGCCCAGCTTTATTGCAGGAGAAATAACTGCGGATAAACCTTAGTATAACCACCTTGCACTTGCAA
Unaligned ( gi|31 ): ATTTATTTTCAAAATAGCATTTGATCTTCTATTATTTCTATTTGGCCTCAAGCACTCAGTCATGGGTTTTTTTATTGATCAAGG
Unaligned ( gi|33 ): GCAATATTCTAAATACAAGACAATTTTGCAAGTTTAAAATTTTATAAAACAACTAATATTACATACACCTT
Unaligned ( gi|38 ): GTTTGTTATCAAATTCCTTCAATGAACCTATATACATGTATTTACTTATTTTTT
Unaligned ( gi|39 ): GGCTCACTGGCTTTCTTTTTAATGATATGCATTTGTCAATTGCGAGTAGTTCA
Unaligned ( gi|45 ): ATCAAATCAAAATAGCATTCTTTTTTTTTATAGTCAATT
Unaligned ( gi|49 ): TACATTTATATTTGACATCCAGTTTTATTGCAGGA
Alignments
lowQualScore : 4444 1 2222222 222 222 111 111111111 1111111111111 111111 111 222222222 1 22222
lowQualScore : 2222 5 6 1111111 5 5 5 44 44 88888888888 5555555 44444 1 55 1 000 1 55 1 4444 22 0 444 333 333 999999 22 44444 1 1 6666666 1 44 8888888888 1 44 1 55 22 1 1 666 1 1 1 222 22 22 2 22 1 1 1 2 2 2 2 111 4 2 2 88 1 2 2 33 2 555555 6 1 66666666 333 66666 444444444 11 77 2 1 5 1 555555 5555555 333 3333 3333 1 6666666 1 1 5 1 66 22 1 22 1 44444 333 11 1 1 333 7777777777777 22 2 666666 1 6 000 444444444 8 44 1 0 0 11111
lowQualScore : .... . . ....... . . . .. .. ........... ....... ..... . .. . ... . .. . .... .. . ... ... ... ...... .. ..... . . ....... . .. .......... . .. . .. .. . . ... . . . ... .. .. . .. . . . . . . . ... . . . .. . . . .. . ...... . . ........ ... ..... ......... .. .. . . . . ...... ....... ... .... .... . ....... . . . . .. .. . .. . ..... ... .. . . ... ............. .. . ...... . . ... ......... . .. . . . .....
lowQualScore : 5555 5 7 1111111 7 0 0 22 77 66666666666 7777777 33333 7 66 7 444 7 00 8 2222 88 6 222 333 333 111111 66 88888 9 7 2222222 9 55 3333333333 9 55 9 22 66 9 9 000 9 0 9 333 66 88 0 88 0 9 9 5 1 0 0 777 2 1 1 77 3 1 1 22 0 888888 0 9 00000000 222 77777 000000000 22 00 8 8 5 8 222222 9999999 222 9999 9999 7 2222222 7 9 4 9 11 88 9 66 9 55555 444 88 3 4 777 4444444444444 11 8 000000 0 7 888 888888888 0 88 2 0 2 55555
consensus : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTATT-TT--AT-C-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----T----TT--ACATATCGTNACTCGACGAC-TTCGTCA--A---A--TTA-ATGTAAAAT-ACT--G--TTTTATTGAC
Reference ( family-1489 ) : NNNNNNNNNNNTCATTTAT----TTGAGTTCATCGACA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACAATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACANTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTNTGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTATT-TT--AT-C-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----T----TT--ACATATNGTGACTCGATGAC-TTCGTCA--A---A--TTA-ATNTAAAAT-ACT--G--TTTTATTGAC
gi|1 : -----AACATTCAATCAG---T---TGCA--TTTCCT-TC--TCTAT--ATA-A-TTCCTTG---ATAAGAT----TTA-ACAT-TTGTGAC---ATAAC-TTCGTCATTA---AACTTA-ATAT
gi|1 : catttatggaacatgaatgacaaaatcgtagATG-T-TAAATCT--TAT-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATGCAACTG-ATTG--A-ATGTT----TGTGAACGC--TCGCG--TATT---CACGT---AAAATC--TTGCAATATCTCGTTTTC--AAT-----TATC-CTAAATTCCATTCACCTC-------AGG-A--ACAAA----------A-ATCAAA--AT-TC--TTTCATTGCAGAATGAA--AC-TC-T-C-A-TCAAAATAATAC-C--ATTCCCAACAAT--TTGCGTT--TAA-AAT--TGTTGAAGTGAATCTG-AATA-CAAAATTTGTATACCG-CAGCTAAAA-TAA-CGA-C-A-AA-TGAACGAGAACTTTTCCTTCA-AA-TCTC-AAA------ATCTTTAA-TT-------CAAG---ATC----GTTTTGCAT----GATCGAAACATGTTTA-T-A-C------AT-------C---AAAGATTGA----ATACA----ACTTACAGTT-------TATGT-TAAGAAATCAACTGCCTGTGAGTTATGAATGAGTAATT-TGCCAAA-T-AATGAATCCTTC--GTGTGCTGTT-TC--AT-C-----AACATTTAGTCAG---AAGAGACAAGTTTCCTATCCTTCTAT--GCA-A-GTCCTTG---AT--------------CATATTGtgtgaacgctcgcgtattcacgtaaaatcttgcaatatctcgttttcaattatcctaaattccattcacctcaggaacaaaaatcaaaattctttcattgcagaatgaaactctcatcaaaataataccattcccaacaatttgcgtttaaaattgttgaagtgaatctgaatacaaaatttgtataccgcagctaaaataacgacaaatgaacgagaacttttccttcaaatctcaaaatctttaattcaagatcgttttgcatgatcgaaacatgtttatacatcaaagattgaatacaacttacagtttatgttaagaaatcaactgcctgtgagttatgaatgagtaatttgccaaataatgaatccttcgtgtgctgtttcatcaacatttagtcagaagagacaagtttcctatccttctatgcaagtccttgatcatattgagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|10 : catttatggaacatgaatgacaaaatcgtagatattaagtttaatgacgaagttatgtcacaa-CATGGA-----------CTTATATAGAG-------A-----AG-G--A-A-ACGCAACTG-ATAG--CGGT-GG----TATGAACGC--TCGCGCGTATT---CACGA---AAAAAAAATCGAGACATTTCGTCTCC--AAA-----TGTCCTTAACTTCAATTCATCTC-------AGG-A--ACAAA----------ATATCAAA--AT-TC--TTCCTTTGCACAACAAAACAT-TC-T---A--CAAACCGAGGC-C--ATTCACAGCAAC--TTGTGTT--TAA-AAT--TGTTTAAGTACTTATG-AATA-TAAAATGTGTATACTG-CCACCGTAA-TCATCAAGG-A-AA-GA-ACTTGAAA-TTTACTTCA-AA-CTGC-AATCAAGGAAT-TCGAA-TTATTGCTGCAAT---ATTTTAAATTTCATAT----AATTAAAGCGTGTATA-A-A-C------ATAATAAAACACATAAGGTTAC----ATAAA----CCTTAACGTT-------CATGTTTATGAA--CACTTGCCTGTAAAATTTGAATGATTAATTATATTATA-T-AATTAagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|11 : aataatatgtcgtttacaacaattgccgtttgtcttccctatctgattctcttggttaggaG-G--A-A-A-GCAACCG-A-------AT--------GTGAGTGC--TTGCA--TATTATTTACGG---AAAATC--TAGTAATAACTGGTTTTC--CAT-----GATG-TTAACTTCC-TTCATCTC-------AGG-A--ACACA----------A-ATCAGA--AT-TC--TTACATTGCAAAATGAA--AT-TC-T-A-A-TCAAATCAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTCTG-ATTTTCAAAATTTGTATACAG-TAGCTAAAA-TAA-CAA---A-AA-TT-GAGAAAAATTT-ACTTCA-AA-CCTC-AAT------ATTTTTAT-TT-------TAAG---ATC----ATTTTACAA----GATCGAAACAT-TTTA-A-ATC------AT-------C---TAAGATTAC----ATACA---------C-----------------CAAGAAATCAGA-------AAATTATGAATGACTA-TT-TACCAAA-T-AATTAATCCTTT--GTGAGCTATT-TT--AT-C-----AACAATTAGTAAG---AAGATACAAG--TCCTATCCTTCTAT--ATA-A-GTCCTGGTTTAT----T----TTTAACATATTTTTATTTGACGAC-TTCA-CA--A---G--TTC-ATGCAAAGT-ACT--G--TTTTATTGACtatagaca
gi|12 : gtggagggacagccTT---TACAC---AAAATC--ACGCAATGTCTC-------------------C-TT---TTCCATCCATCTC-------AGG-A--CAATA----------A-ATACAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-C-A-A-TCAAAGCAATAC-CATAT--CCAGCAAT--TTGTGTT--TAG-CAT--TAATGAAATAATTCTG-ATTT-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCACAATCCGC-AAT------ATCTTTCA-TT-------AAAG---ATA----ATTTTTCGT----GATCGAAACATTTTCA-A-T-C------AT-------C---TAAGAATAC----ATACA----ACTTGCATTT-------TATGTACAAGAAATCTGCTGCTTGTAAATTATGAATGATT-ATT-TACCAAA-T-AATTAATCCTTC--GCATGCTGTT-TT--AT-C-----AACATTTA--------GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----T----TA--ACA-ATCG
gi|13 : TATAAT-TAA-TTTATTAT-CAAGAACAGAGAGTCGTATCATATACACTTATACTA-----AG-G--ACA-G-GCAACTG-ATTG--AGGT---------------------CA--TATT---CACGC---TAAAT-------AAT-----GTTTTC--AAT-----GATC-TTAACTT---TT--TCT-----------------------------------------------TTGCATT-TATAACGAA--AT-TC-T-T-T-ACAAAACAAAAC-CA--TTCATAGTAAA--TTGTGTT--TAC-AAT--TGTTGAAGTACTCATG-ATTG-CATAATTTGTATACTGACACTTAAAA--AA-CAAGA-A-AA-GT-ACTTGAAATCTCACTTCA-AA-CCGC-AAT------GTAAGAAG-TT-------CAAT---ATT----ATTTTG---------------TATGTTTA-AGA-C------AT-------C---TAAGGTAAC----ATACA----GCTGACATTT-------TAAGCATAAGAATTCAGTTTCATGTGGAATCTGAATGATTAAAA-TACTAAT-T-TATTAGTTCTTC--CTGCACTATT-TT--AT-C-----AACATTgtaggattacttatattaaaactgttgacgtcccataaaacgggcaatgcatgtcatatttacgat
gi|14 : gtatccaccttgtctacagatttattttttgtca-CAAGGA-----------ATTATATAGAG-------A-----AG-A--A-AAG-GCAACTG-ATTG--AGAT-TA----TGTGAACGC--TCGCG--TATT---CAAGC---AAAATC--TCGCAATATCTCATTAAT--AAT-----GTTC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAGAATGAA--AT-TG-T-C-A-TCAAAACAATGC-C--ATTCCCAGAAAT--GTGTGGTAACAATAAT--TGTTGAAGTACTTGTG-ATTA-CAAAATGTGTATTCTG-CAGCTAA--------------------------AAATTTCCCTTCA-AA-CCTT-AAT------ATCTTTAA-TT-------CAA-----------------------------AAACA--TTTA-A-A-------------------------ATTAC----ACACA----ACTTACAGTT-------TATGTATAAGAAATCAGTTGCCTGCGAGTTATAAATGATCGATT-TG-CAAA-T-TATGAATTTTTC--GTGTGCTGTT-TC--AT-C-----AACATTTAGTCAC---GAGATGCAAgacgtgtcatgtatat
gi|15 : ttttgaacaggcatagaatttcctgcttttttttcattagcagttaaaagacaA-T-TAA-TTA--TAT-TATATA-----------ATTATATAGA---------------------------CA-C---ATTG--AGAT-GT----TATGAACAC--AGGGG--TATT---CATGC---ATTATG--TCGCCAAATCTCGTTTTC--AAT-----TATC-CTAACTACCATTCATTTT-------GGA-G--GTACA----------A-ATCAAATTATGTC--T----TCGCATAATGAA--ATATC-G-CTA-T-AAAATGACAC-C--ATTCCCAGCGAA--TTGTGTT--TAA-ACT--TGTTGAAGTACTTGTG-A--A-TAAAG---G-------------AAAA-T-A-C----------TT-----GAAACTTTACTTCA-AA-CTGCAAAT------AT-TTTAA-TT-------CAAGTGCAT-----ATTTTGTAT------TCAAAACATAAAAA-A-A-C------AT-------C---TAAGGTTAT----ATAAT----GCTTACATTT-------TGTGTATAAGAAATATATTGCC----AGCTGTGA------AATT-TG------------------TC--GCATGCTACT-TT--AT-C-----AATA-TTAGAAGA---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-AT
gi|16 : aatttgaatgATC--TCGTAACATCTCGTTTTC--AAT-----TATC-TT-----CCATTCGTCTG-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAAAATGAA--AT-TC-T-C-A-TAAAAACAATAC-CA--TTCACAGAAAT--GTGTGTT--TAA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATAT-TATACTG-CGGCTAAAA-TAA-CGA-C-A-AA-TA-ACGATAAATTTTCCTTCA-AA-TCTC-AAT------ATTTTTAA-CT-------CAAG---ATC----ATTTTACTT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGAGTAC----ATACA----ACTTACAGTT-------TTTGTACAAAAAACCAGATGCATGTGAAGTATGAATGATTAATT-TGCCAAA-C-TCTTAATCCTTC--GTGTGCTGTC-TT--AT-CATTTTAACATTTAGTCAG---GAGATGCAAGTTTCCTGTCCTTTTTT--ACA-A-GTTCTTtat
gi|17 : -CAAGAA-----------CTTGTATAGAG-------A-----AA-G--G-A-GAGCAACTG-ATTG--CGAT-TT----TGTA-----------------T---CACTC---AAAATC---------ATCTTGTTTTTTAAAT-----TA
gi|17 : agATT-TCATCTTCCATTCTTCTT-------AGG-T--ATGCA----------T-ACCAAA--AC-TG--TGACATTACAGAAGGAA--AT-T--T-C-ACTCATAATGGGAT-CA--CCCCCAGTAATGCTTGTATG--TGA---T--TGTTGAAGTTCT-ATGCATTA-CAAAAATTGTACACTA-CCACTAAAAACAA-GAA-C-AGAA-CT-TCTTGAATTTTGACTTTA-AA-T-TA-AAT------GTTTTTAA-TT-------CAAT---ACC----ATTTTG-------AA--AAAACA---TTATA-A-C------A-------------AATATCAT----ATACA----catgtattcttatttacatgttttttcattttatttacatggatttcatcttccattcttcttaggtatgcataccaaaactgtgacattacagaaggaaatttcactcataatgggatcacccccagtaatgcttgtatgtgattgttgaagttctatgcattacaaaaattgtacactaccactaaaaacaagaacagaacttcttgaattttgactttaaattaaatgtttttaattcaataccattttgaaaaaacattataacaaatatcatatacactaagccatataaatacacaacattattag
gi|18 : agcaagaacttgtatagagaaaggagagcaactgattgcgattttgtatcactcaaaatcatcttgttttttaaattacatgtattcttatttacatgttttttcattttatttacatggG-------A-----AG-A--A-A-G-GCTACCG-ATTG--ATAT-TT----TGTGAACGC--TCAC------------------------------AATATCTTGTTTTC--AATAATATTATC-TTAACTTCCATTCATCTC-------AGG-A--ACACC----------A-ATCAAA--AT-TC--TTGCATTGCAGAATGAA--AT-TT-T-C-A-TCAAAACAATATACA-A---CTAACATT--TTATGTctaagccatataaatacacaacattattag
gi|18 : cagtgataaatacattggcaataccaatT-------CAAA---AT------TCTTGCATTGCAGAATGAAAT---TTT------C------AT-------C----AAAACAAT----ATACA----ACTAACATTT-------TATGTACAAGAAATCAGTTGCCTGCAAATTATGAATGATTA-TT-TACCAAA-T-AATTAATCCTTC--ATGTGTTATT-TA--AT-C-----AACTTTTAGTCAG---TAGATGCAAGTTTCTTATCCATCTAT--ATA-A-GTCCTTG---GT----acaagaaatcagttgcctgcaaattatgaatgattatttaccaaataattaatccttcatgtgttatttaatcaacttttagtcagtagatgcaagtttcttatccatctatataagtccttggtgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|19 : cagtgataaatacattggcaataccaatgaagaaaggctaccgattgatattttgtgaacgctcacaatatcttgttttcaataatattatcttaacttccattcatctcaggaacaccaa-TAG-TAA-T-A-AAGCT-ACTTGAAATTTTACGTTA-AA-ATGT-AAT------ATTTTTAA-TT-------CAAG---ATC----ATTGTTCAA----TATCAAAACAT-TCTA-ATA-C------AT-------C---TAACGTTACCATGATACA----ATTTACATTTAACTTTTTATGTACAAGAAAGCCATTGTCTGTGAATTCTGAATGATTACTT-TGCCAAA-T-AACGAATCCTTT--GTGTGTGATT-TTTCAT-C-----AACATTTAGT------------CAAGTTTCCTAACCTTCTAT--GTA-A-AGCATTA---AT----T----GT---------GTGACT--ATGAA-TCAGTCG--A---gaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|2 : ttataagtccttgatac-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GTAACTA-ATTG--AGAT-TT-----GTGAACAC--TTTTT--CATT---TACGC---AAAATC--TTGCAATAT-------------------TATC-TT-----TCATTTATCTA-------GGGGA--ACCCA----------A-ATCAAA--AT-TC--TTACATTGCAGAATAAA--AT-TT-T-A-A-CCAAAACAAGAC-TA--TTCCCAGCTGT--TTGT-TT--TAT-GAT--TGTTGAAATACTTATA-ATTA-CAAAATGTGTTTACTG-CAAATAAAA-TAA-CAG-----AA-TT-GCGAGAAATTTTACT--A-AA-C-------------------AA-TT---------------------ACT-----------ATCTAAACATATCAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACGTTT-------TATGTACCA-AAAGCAGTTGCCTTTGAATTCTGAATGATTAATT-TACCGAA-T-AATTAATCCTTT--GTGCCCTATT-TT--AT-C-----AACATTTAGTCAG---GAGATACAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TGAGTTT--A-ACATCATT-TTCAAC-ACATT--TCA--G---G--TTATATGTGGCAT-ACTCAG--TTTTATTGcgctgtgaaacagttcaccaggatgatttcaacatcttttaagaagaatccaaatcatata
gi|20 : tagtcagccactatagagagatcttcagatctctcctgtatttttttttgatggggt-CAAGGA-----------ATTATATAGAG-------A-----AA-G--A-AAG-GCATCTG-ATTG--ATAA-TT----TGTGACCGC--TCGCG--TATT---CATGC---AAAATC--TCAGAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCGTTCATCAC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGTAGAATGAA--AT-TC-T-C-T-TCAAAACAATAC-C--ATTTCCATCAAT--TTGTGTT--TAG-AAT--TGTTGAAGTACTTCTG-ATTT-CATAATctggaggataacttcagaataaatctgagtagaaccaccgtccttccactagcaacttaaagattttggagcgaacaggacctaatgattgtttattttaatata
gi|21 : agggtgagatttttatattccacaggatgaacttatg-CAAGGA-----------ATTTTATAGAG-------A-----AG-GGAA-A-A-GCACCTT-GTTG--AGAT-TA----TGTGAAAGCATTTGCA--TA-----CATGC---AAATTC--TTGTTGAATTTTGTTTCC--AAT-----TATC-TGGGCTTCCAGTCATCTCATAGTAAAGG-AT-AGGGAGTGGGGAGGGA-AT-AAA--AT-TTTATTGCATTGCAGAATGAA--AT-TC-TCC-A-T-GAAATGAGA--TA-ATTCCCAGCAAC--TTGTATT--CAA-AAT--TGTcgcctcatacattgttttaataatagccttaaaatatatttttt
gi|22 : ttcttatatacttatcaagacataaactaaattaaacattgtcaggttcaaaacagttgttgtttcaaa-AAT------ATCTTTAA-TT-------TAAG---ATC----ATTGTGCGT----GATCGAATCATATTAA-A-A-C------AT-------T---TAAGGTTAC----ATCCA----A-TTACATTT-------TATGTACAAGAAAGCAGTTGTCTGTGAATTCTGAAAGGTTAATT-TGTCAAA-T--ATTAATCATTC--GTGTGCTATT-TT--TTTC-----AACATTTAGTCAG---GATATGCAAGTTTCCTATCCTTCTAT--GTA-A-GTGCTCG---GT----T----caa
gi|23 : aaataaaattaatataaaatTTCG-ATTA-CAAAAATTCTATTTGG-TCGCTGAAA---A-CAA-C-ACAA-TT-ATTTGAAATTTTACTTCA-AA-CTGA-AAT------ATTTTTAA-TT--------AGG---G------ACTTT-CAT----CAT--AAA-ATATTCA--------------------------AAGATAAC----ATA----------ATATTT-------TATGTATAATAAATCAATTGTCTGTGAATTTTGAATAATTAAT-------------ATT------------------TC-TT--AT--------GCATTTGGTC------AGATGCAAGTTTCCAATTCTTCTAT--ATA-gcaaactgtgccaagtcgagatatatttgaaaaaaat
gi|24 : -CAAAGA-----------ATTATGTTGAA-------ACAAATAT-A--A-A-A-TCAA-TGTATTG--AGAA-TT----TGTGAAAGA--ATATG--TATT---TAC-C----AAAT-----------TTTCATTTTG--AAT-----CATC-TTAGCTTCCAGTCATCGC-------AGG-ATTATACA----------A-AT--AA--AT-TTTATTACTTTG------------------------CAAAAC---------ATTCCCAACAAT--TTTTGTT--CAA-AATTGTGTTTAAATTCTATTG-ATTA-
gi|25 : aaatggtttTTTAGGTT-------TAAG---ATC----AGATTGATT----GATTGAAACACTATAA-A-A-CGCCAGTAT-------T---TTAGGTTAC----ATACA----ATTTACATTT-------CATGTACAAGAAAGCAGATGCCTGGGAATTCTTAATAGTTAACT-TGTAAAA-TATAATAAT-ATTC--CCATGCTATT-TG--AT-C-----AACATTAAGTCAG---GAGA
gi|26 : tGATGCAAATTTCCTATCCTTCTAT--ATA-A-AT
gi|27 : ---GAGATGCAAGTTTCCTATCCT----T--ATA-A-GTCCTTG---ttaactgccgaatggtgtttcaatccaaatgtttatataactgcagtttgtttcctgatttaatgattaaagcgattatataacaattatatcgatttatataataaaaggtaaactatgtac
gi|27 : agaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTcgtagagagagatgcaagtttcctatccttattagtccttaggtagagagagatgcaagtttcctatccttattagtcctt
gi|27 : agagagagatgcaagtttcctatccttataagtccttgcgtagagaCTATCCTT--AT-T-----AGTCCTTAGGTAGAGAGAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTaggtagagagagatgcaagtttcctatccttattagtcctt
gi|28 : agagagagatgcaagtttcctatccttataagtccttgcgtagagagagatgcaagtttc--TAC-CAAGGA-----------ATTATATACAG-------A-----AG-G--A-AAG-GCAGCTG-ACTG--AGAT-TT----TGTGAATGC--TTGC-----TT---TACTA---AAAAT
gi|3 : taTCATTTATCAATTTG-GCTCATTAAAATTCCA--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACCC--CCACG--TATT---CATGC---AAAATC--TCGCAATATCTTGTTTTT--CAT-----TATC-TTAACTTCTGTTCATCTC-------AGG-G--ACACA----------A-ATCAAA--AT-TC--TTACTCTGCAGAAGGAA--AT-TA-T-C-A-TAAAAAAAATAC-CA-ATTCCCAGAAAT--TTGTGTT--TTA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATTTATATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACAAGAAACTTTTCTTCA-AA-CCTC-AAT------ATCTTTCA-TT-------CAAG---ATC----ATTTTGCTT----GATCGAAACATGTTTA-A-A-C------AT-------C---AACGATTAC----ATACA----AATTA-AGTT-------TATGTACAAGAAATCAGTTGCATGTGAATTATGAATGATTAATT-TGCCAAA-T-TATTAATTCTTT--GTGTTCTATT-TT--CT-C-----AACATTTAGCCAG---CAGATGCAAGTTTCCTATCCTTCTAT--ACA-A-GCCCTTG---AT----T----TT--ACATATGGTGACTCAATGAT-TGCGTCA--A---A--TTA-ACTCAAAATGAAT--GCATTTCAATGACagtccaaaacttaaaaaatcttcttctcttgaacggccc
gi|30 : aaatgcattga--TATCTTA-T-TA--TTT--TGCACAAAGA-----------CTTATATGGAG-------A-----AG-G--A-A-ATGCAACTC-GTTT--ACGT-TTGAAATATAA---C--TAGCG--TACT---CATGCGTAAAAATtgaatttaagcatcagatttgtagataaaacactgcacagtat
gi|32 : tta---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTG---
gi|32 : tagaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTggtagagagagatgcaagtttcctatccttattagtcctt
gi|34 : tagagagagatgcaagtttcctatccttattagtccttgggtagaga---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---GT----
gi|34 : ga---GAGGTGCAAGTTTCCTATCCTTCTagagagaggtgcaagtttcctatccttct
gi|35 : gagaggtgcaagtttcctatccttctatataagtccttggtagagaAAGTACTTTTG-ATTA-CAAAATGTGTATACTG-CAACTAAAA-AAT-CAA-
gi|36 : CAGA--GAGATGCAAGTTTCCTAgtgaagtacttgtgatt
gi|36 : aACATTTAGTAGA---GAGATGCAAGTT-----TCCTTCTAT--ATA-A-GTCcatttagtagagagatgcaagtttccttctatataagtc
gi|37 : acagagagatgcaagtttcct---GAGAAGCAAATTTCCTATCCTTCTAT--ATA-A-GTCCTTG---
gi|4 : gaTTCACCGGAA--CCTATTATTATG-T-TCA-TTT------CAAGGA-----------ATTACATAGAG-------A-----AG-G--A-AAG-GCAATTG-ATTG--ATAT-TT----TGTGAACGT--TCGCG--TATT---CATGC---AAAATT--TCACAATATCTCGTTTTC--A-T-----TATC-TTAATTTCCATTCATCTC-------AGT-A--ACACA----------A-ATCAAA--GT-TC--TTACATTGCAGAATGAA--CT-TC-T-C-A-TAAAAA-------------------AAT----GTGTT--TAA-TAG--TGTTGAAGTACCTCTG-ATTA-CAAAGTTTGTATACTG-CAACTAAAA-TAA-CAA-C-A-AT-TT-ACAAGAACTTTTACTTCA-A-------------------------------------G---ATA----ATTTTTCGT----GATCATAACA-ATTTA-TTA-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGTAATCAGTTGCCTTTACACTATGAATGGTTAATT-TTCCAAA-T-AACTAATCCTTC---TGTGCTATT-TC--AT-C-----AACATTAAGTCAG---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---GT----T----CT--gatatgcaagaacaataagt
gi|40 : taacacgtagttaagtcacacgtgtacacaaataatgtacatactcgctgaaataaaatgatat--TAT-CAAGGA-----------ATTATATAGGG-------A-----AG-G--A-A-ATGCAAATG-tttgaagtgtattttggatatacatcataaaacgagtaataaaagattcattgttaaaaattccaggtcattcc
gi|41 : aaaca--TAC-CAAGGA-----------ATTATATGGAG-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ttgtacactcgcg
gi|42 : --TAC-CAAGGA-----------ATTATATAGAA-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ta
gi|43 : AGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----T----TA--ACAa
gi|44 : ---GAGATGGAAGTTTCCTATCCTTCTAT--ATATATGTCCTTG---
gi|46 : aGAAGCAAGTTTCCTATCATTCTAT--ATA-C-ATCCTTG---
gi|47 : gagtTTGGTAGA---GAGTTGCAAGTTTTCTATCCTTCTAT--
gi|48 : agtcc-CAAGGA-----------CTTATATAGAG-------A-----AGAA--A-A-A-GCAACTG-TTT
gi|5 : gagTCATTTAT----TTGAGTTCATCGACA--CTG--TTTTATA-TATAA-A-----AA-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AAAG-TT----TGTGAACGC--TTGCG--TATC---CACGT---AAAATC--TTGTAATATCTCATTTTT--AAT-----TATC-TTCGCCTCCATTTATCCC-------AGG-A--ACACA----------A-ATTACAT-AT-T---TTACACTGCAAAATGAA--AT-TG-C-A-A-TCAAAACAATAC-C--ATACCC-GAAAT--GTGTGTT--TAT-AAT--TGCTGAAGTCCTTGTG-ATTA-C-ATATGTGTATACTG-CAGCTAATA-TAA-CGA-C-A-AA-TT-AC--GAAATTTT----------CCTC------------------------------------------ATTTTGCGT----GATCGAAACATGTTAA-A-A-C------AT-------C---TAGGATTAC----ATACA----ACTTACAGTC-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTTATT-CA-CAAA-T-TACGAATCTTTT--GTGTGCTGTT-TT--AT-C-----AACATATAGTCAG---GAGATGCAAGTTTCCTATCCTT
gi|6 : gatactgttgatcatccggctttggattaaattttagatttttaac-TGA-CTT--TATTCTAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATACAACTG-ATTG--AGAT-TT----TCTGAATGC--TTGCA--CATT---CATGC---AAAATC--TCGCAGTATCTCATTTTC--AAT-----TAAC-TTAACCTCCATTCATC------------------------------------AAA--AT-TC--TTGCTTTGCAGAATGAA--AT-TC-T-C-A-ACGAACCAATAC-CA--TTCCCAGCAAT--TTGAGTT--AAA-AAT--TGTTAAAGTACTCCTA-ATTA-CAAAATTTGTATACTG-CAGGCAAGA-TAA-CAA-TGA-AA-TT-GTGAGTAAATTTACTTCC-AA-CCTC-AAT------ATCTTTAT-TT-------CAAG---ATC----ATTTTATTT----GATCAAAGCATATTAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ATTTACAGGT-------TATGTACAAGAAA-CAGTTGCCTGTGAATTCTGAATCATTAATA-TGCCAAA-T-AACTAATCCTTT--GTGTGCTATT-TA--AT-C-----AACATAAAGTCAG---AAGATGCAAATTTCCTATCCCTCTAT--ATA-A-GTCCTTgataaaaataaacaaatattaaaataaagttatgttatataaatcaatttatattttattactacgaataac
gi|7 : aaaatttaatctcttaaattgtattttgaaaaaaaccGTTTTT--AAT-----TATC-TTCACTTCCATTCATCTC-------AGG-A--ACACA----------A-AACAAA--AT-TC--TTACACTGCAGAATAAA--AT-TG-T-C-A-TCAAAACAATAC-CA---TTGCGGGAAT--TTGTGTT--TAA-AAT--ATTTTAAGTACTTCTG-ATTA-CAAATTGTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-GT-TT-ACAATAATTTTT-TTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---AGC----ATTTTGTGT----AATTGAAACATGTTTT-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACAGTT-------TATGTACAAGAAATCAGTTGCCTATGAATTATGAATGATTAATT-TG-TAAT-T-TATGAAGCTTTC--GTGGGCTGTT-TC--AT-C-----AACATTTAGTTAG---GGGATGCAAGTTTCCTATCCT--TAT--ACA-A-GTCCTTG---GT----T----AT--ACcctataatataatgttttatttctattatataaaatagtttctacttttaataaagcacatacaagcttgaatttaaaat
gi|8 : tC-TAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AGGT-TT----CGTAAACGC--TCGCG--TATT---CACAC---AAAATC--T-----TAT-----------AAT------ATC-TTAACTTCAATTCATCTC-------AGG-A--ACTCA----------A-ATCAAA--CT-TC--TAACATTGCAGAATGAA--AT-TC-T---A-TCAAAACAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTAAAGTACTTCTG-ATTA-CAAAATGGGTGGACT--TAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATATTTAA-TT-------CAAG---ACC----ATTTTA----------------------A-A-A-C------AT-------T---TAAAATTGC----ATACAACTGACTTACATTT-------TATATACAAGAAATCAGTAGCTTGTGAACTATGAAAGATTAATT-TGCCAAA-T-AATCAATTCTTCGTGTGTGTTATT-TT--AT-C-----AACATTTAGTCAT---GAAATGCAAGCTTCCTATCCTTCTAT--ATA-A-GTCCtcatgtgcagattcatgtcctatataagatcatttatcttcgtccatcacgaaaactgattgccatatataaccttttgggtgcgttgataatggtgttaaaccaagtagaaaaaaaaaaattatgaaagaactgtgaagcaaagtgccaaaatgtggtcatgtggaaatgatatgattgtga
gi|9 : tgattagtttacatttgcataatcaagacacttgtatgaataattcatgtatttataacaaaacaaacatttgacattcgaatgaactgagcccgtgtggttccggAAGTTGCCTTTCCTTCTCTCTATA-A-GTCCTTG---CT----A----TC--GCTTAGTGTCAATAAATGAT-TTC--CA--GTTTA--TTA-A-ATATAAT-ATT--A--TTATATT
gi|9 : atttgcacgaaataaaatat--TAG-CAAGGA-----------CTTATAGAGAG-------A-----AG-G--A-AAG-GCAACTT-ATTT--AGAT-GG----TATGAATGC--TCGCA--TATT---CATGC---AAAATC---------A---CGTTTTC--AAA-----TATC-AGGACTGCCATACATCTC-------ATA-A--ATACA----------A-ATTAAA--AT-GT--TTTCTTTGCACAATGGA--GC-TCCT-T-A--CAAAATGAGAC-CA--TTCCCATCAAA--TTGTGTG--TAA-AAT--TGTTGAAGTACTTATG-ATTA-CAAAATTTGTATACTG-CAACTAAAA-TAT-TAA-GGA-AA-GT-ACTTAAAATTATACTTCA-AA-CTGC-AAT------ATTTTAAA-TT-------CAAG---ATC----ATTTTGCGT----GTTTAAAACATACA-A-A-A-C------AT-------C---TAGGGTTAC----ACAGA----TCCTACATTT-------TATGAAAAAGAAATCAGTTGCCTGTGAA------------AATT-AG--AAACT-TATTAATTCTTA--GTATGCTATT-TT--AT-A-----AACATTTAGTAGA---GAGATGCAAGTTTCCAATCCTTCGAT--ATA-A-GTCCTTatttagatggtatgaatgctcgcatattcatgcaaaatcacgttttcaaatatcaggactgccatacatctcataaatacaaattaaaatgttttctttgcacaatggagctccttacaaaatgagaccattcccatcaaattgtgtgtaaaattgttgaagtacttatgattacaaaatttgtatactgcaactaaaatattaaggaaagtacttaaaattatacttcaaactgcaatattttaaattcaagatcattttgcgtgtttaaaacatacaaaacatctagggttacacagatcctacattttatgaaaaagaaatcagttgcctgtgaaaattagaaacttattaattcttagtatgctattttataaacatttagtagagagatgcaagtttccaatccttcgatataagtcctt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TAAGCCCATTTGAAGAGTGTAACGTAATTACATGTTATATTTGACGCCCAGCTTTATTGCAGGAGAAATAACTGCGGATAAACCTTAGTATAACCACCTTGCACTTGCAA
Unaligned ( gi|31 ): ATTTATTTTCAAAATAGCATTTGATCTTCTATTATTTCTATTTGGCCTCAAGCACTCAGTCATGGGTTTTTTTATTGATCAAGG
Unaligned ( gi|33 ): GCAATATTCTAAATACAAGACAATTTTGCAAGTTTAAAATTTTATAAAACAACTAATATTACATACACCTT
Unaligned ( gi|38 ): GTTTGTTATCAAATTCCTTCAATGAACCTATATACATGTATTTACTTATTTTTT
Unaligned ( gi|39 ): GGCTCACTGGCTTTCTTTTTAATGATATGCATTTGTCAATTGCGAGTAGTTCA
Unaligned ( gi|45 ): ATCAAATCAAAATAGCATTCTTTTTTTTTATAGTCAATT
Unaligned ( gi|49 ): TACATTTATATTTGACATCCAGTTTTATTGCAGGA
Alignments
lowQualScore : 2222 1 1111111 222 222 111 111111111 111111111 111111 22222222 1 22222
lowQualScore : 4444 5 5555555 6 5 4 4 33 55 88888888888 5555555 44444 1 55 1 000 1 55 1 4444 22 0 444 333 333 999999 22 44444 1 1 6666666 1 44 8888888888 1 44 1 55 22 1 1 666 1 4 1 1 222 22 22 2 22 1 1 1 2 2 2 2 111 4 2 2 88 1 2 2 33 2 555555 6 1 66666666 333 66666 444444444 11 77 2 1 5 1 555555 5555555 333 3333 3333 1 6666666 2 1 5 1 66 22 1 1 22 44444 333 11 1 1 333 666666666 0 2 111111 3 8 00000000 8 77 1 0 0 11111
lowQualScore : .... . ....... . . . . .. .. ........... ....... ..... . .. . ... . .. . .... .. . ... ... ... ...... .. ..... . . ....... . .. .......... . .. . .. .. . . ... . . . . ... .. .. . .. . . . . . . . ... . . . .. . . . .. . ...... . . ........ ... ..... ......... .. .. . . . . ...... ....... ... .... .... . ....... . . . . .. .. . . .. ..... ... .. . . ... ......... . . ...... . . ........ . .. . . . .....
lowQualScore : 0000 5 2222222 0 0 4 4 99 66 66666666666 7777777 33333 7 66 7 444 7 00 8 2222 88 6 222 333 333 111111 66 88888 9 7 2222222 9 55 3333333333 9 55 9 22 66 9 9 000 9 2 0 9 333 66 88 0 88 0 9 9 5 1 0 0 777 2 1 1 77 3 1 1 22 0 888888 0 9 00000000 222 77777 000000000 22 00 8 8 5 8 222222 9999999 222 9999 9999 3 2222222 2 9 4 9 11 88 9 9 66 55555 444 88 3 4 777 555555555 1 7 888888 2 0 44444444 0 22 2 0 2 55555
consensus : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTT--ACATATCGTNACTCGACGAC-TTCGTCAG---ATTA-ACGCAAAAT-ACT--G--TTTTATTGAC
Reference ( family-1489 ) : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTT--ACATATCGTNACTCGACGAC-TTCGTCAA---ATTA-ATGTAAAAT-ACT--G--TTTTATTGAC
gi|1 : -----AACATTCAATCAG---T---TGCA--TTTCCT-TC--TCTAT--ATA-A-TTCCTTG---ATAAGATTTA-ACAT-TTGTGAC---ATAAC-TTCGTC-----ATTA-A
gi|1 : catttatggaacatgaatgacaaaatcgtagatattaagtATG-T-TAAATCT--TAT-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATGCAACTG-ATTG--A-ATGTT----TGTGAACGC--TCGCG--TATT---CACGT---AAAATC--TTGCAATATCTCGTTTTC--AAT-----TATC-CTAAATTCCATTCACCTC-------AGG-A--ACAAA----------A-ATCAAA--AT-TC--TTTCATTGCAGAATGAA--AC-TC-T-C-A-TCAAAATAATAC-C--ATTCCCAACAAT--TTGCGTT--TAA-AAT--TGTTGAAGTGAATCTG-AATA-CAAAATTTGTATACCG-CAGCTAAAA-TAA-CGA-C-A-AA-TGAACGAGAACTTTTCCTTCA-AA-TCTC-AAA------ATCTTTAA-TT-------CAAG---ATC----GTTTTGCAT----GATCGAAACATGTTTA-T-A-C------AT-------C---AAAGATTGA----ATACA----ACTTACAGTT-------TATGT-TAAGAAATCAACTGCCTGTGAGTTATGAATGAGTAATT-TGCCAAA-T-AATGAATCCTTC--GTGTGCTG-TT-TC--ATC-----AACATTTAGTCAG---AAGAGACAAGTTTCCTATCCTTCTAT--GCA-A-GTCCTTG---AT----------CATATTGtgtgaacgctcgcgtattcacgtaaaatcttgcaatatctcgttttcaattatcctaaattccattcacctcaggaacaaaaatcaaaattctttcattgcagaatgaaactctcatcaaaataataccattcccaacaatttgcgtttaaaattgttgaagtgaatctgaatacaaaatttgtataccgcagctaaaataacgacaaatgaacgagaacttttccttcaaatctcaaaatctttaattcaagatcgttttgcatgatcgaaacatgtttatacatcaaagattgaatacaacttacagtttatgttaagaaatcaactgcctgtgagttatgaatgagtaatttgccaaataatgaatccttcgtgtgctgtttcatcaacatttagtcagaagagacaagtttcctatccttctatgcaagtccttgatcatattgagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|10 : catttatggaacatgaatgacaaaatcgtagatattaagtttaatgacgaagttatgtcacaa-CATGGA-----------CTTATATAGAG-------A-----AG-G--A-A-ACGCAACTG-ATAG--CGGT-GG----TATGAACGC--TCGCGCGTATT---CACGA---AAAAAAAATCGAGACATTTCGTCTCC--AAA-----TGTCCTTAACTTCAATTCATCTC-------AGG-A--ACAAA----------ATATCAAA--AT-TC--TTCCTTTGCACAACAAAACAT-TC-T---A--CAAACCGAGGC-C--ATTCACAGCAAC--TTGTGTT--TAA-AAT--TGTTTAAGTACTTATG-AATA-TAAAATGTGTATACTG-CCACCGTAA-TCATCAAGG-A-AA-GA-ACTTGAAA-TTTACTTCA-AA-CTGC-AATCAAGGAAT-TCGAA-TTATTGCTGCAAT---ATTTTAAATTTCATAT----AATTAAAGCGTGTATA-A-A-C------ATAATAAAACACATAAGGTTAC----ATAAA----CCTTAACGTT-------CATGTTTATGAA--CACTTGCCTGTAAAATTTGAATGATTAATTATATTATA-T-AATTAagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|11 : aataatatgtcgtttacaacaattgccgtttgtcttccctatctgattctcttggttaggaG-G--A-A-A-GCAACCG-A-------AT--------GTGAGTGC--TTGCA--TATTATTTACGG---AAAATC--TAGTAATAACTGGTTTTC--CAT-----GATG-TTAACTTCC-TTCATCTC-------AGG-A--ACACA----------A-ATCAGA--AT-TC--TTACATTGCAAAATGAA--AT-TC-T-A-A-TCAAATCAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTCTG-ATTTTCAAAATTTGTATACAG-TAGCTAAAA-TAA-CAA---A-AA-TT-GAGAAAAATTT-ACTTCA-AA-CCTC-AAT------ATTTTTAT-TT-------TAAG---ATC----ATTTTACAA----GATCGAAACAT-TTTA-A-ATC------AT-------C---TAAGATTAC----ATACA---------C-----------------CAAGAAATCAGA-------AAATTATGAATGACTA-TT-TACCAAA-T-AATTAATCCTTT--GTGAGCTA-TT-TT--ATC-----AACAATTAGTAAG---AAGATACAAG--TCCTATCCTTCTAT--ATA-A-GTCCTGGTTTAT----TTTTAACATATTTTTATTTGACGAC-TTCA-CAA---GTTC-ATGCAAAGT-ACT--G--TTTTATTGACtatagaca
gi|12 : gtggagggacagccTT---TACAC---AAAATC--ACGCAATGTCTC-------------------C-TT---TTCCATCCATCTC-------AGG-A--CAATA----------A-ATACAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-C-A-A-TCAAAGCAATAC-CATAT--CCAGCAAT--TTGTGTT--TAG-CAT--TAATGAAATAATTCTG-ATTT-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCACAATCCGC-AAT------ATCTTTCA-TT-------AAAG---ATA----ATTTTTCGT----GATCGAAACATTTTCA-A-T-C------AT-------C---TAAGAATAC----ATACA----ACTTGCATTT-------TATGTACAAGAAATCTGCTGCTTGTAAATTATGAATGATT-ATT-TACCAAA-T-AATTAATCCTTC--GCATGCTG-TT-TT--ATC-----AACATTTA--------GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTA--ACA-ATCG
gi|13 : TATAAT-TAA-TTTATTAT-CAAGAACAGAGAGTCGTATCATATACACTTATACTA-----AG-G--ACA-G-GCAACTG-ATTG--AGGT---------------------CA--TATT---CACGC---TAAAT-------AAT-----GTTTTC--AAT-----GATC-TTAACTT---TT--TCT-----------------------------------------------TTGCATT-TATAACGAA--AT-TC-T-T-T-ACAAAACAAAAC-CA--TTCATAGTAAA--TTGTGTT--TAC-AAT--TGTTGAAGTACTCATG-ATTG-CATAATTTGTATACTGACACTTAAAA--AA-CAAGA-A-AA-GT-ACTTGAAATCTCACTTCA-AA-CCGC-AAT------GTAAGAAG-TT-------CAAT---ATT----ATTTTG---------------TATGTTTA-AGA-C------AT-------C---TAAGGTAAC----ATACA----GCTGACATTT-------TAAGCATAAGAATTCAGTTTCATGTGGAATCTGAATGATTAAAA-TACTAAT-T-TATTAGTTCTTC--CTGCACTA-TT-TT--ATC-----AACATTgtaggattacttatattaaaactgttgacgtcccataaaacgggcaatgcatgtcatatttacgat
gi|14 : gtatccaccttgtctacagatttattttttgtca-CAAGGA-----------ATTATATAGAG-------A-----AG-A--A-AAG-GCAACTG-ATTG--AGAT-TA----TGTGAACGC--TCGCG--TATT---CAAGC---AAAATC--TCGCAATATCTCATTAAT--AAT-----GTTC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAGAATGAA--AT-TG-T-C-A-TCAAAACAATGC-C--ATTCCCAGAAAT--GTGTGGTAACAATAAT--TGTTGAAGTACTTGTG-ATTA-CAAAATGTGTATTCTG-CAGCTAA--------------------------AAATTTCCCTTCA-AA-CCTT-AAT------ATCTTTAA-TT-------CAA-----------------------------AAACA--TTTA-A-A-------------------------ATTAC----ACACA----ACTTACAGTT-------TATGTATAAGAAATCAGTTGCCTGCGAGTTATAAATGATCGATT-TG-CAAA-T-TATGAATTTTTC--GTGTGCTG-TT-TC--ATC-----AACATTTAGTCAC---GAGATGCAAgacgtgtcatgtatat
gi|15 : ttttgaacaggcatagaatttcctgcttttttttcattagcagttaaaagacaA-T-TAA-TTA--TAT-TATATA-----------ATTATATAGA---------------------------CA-C---ATTG--AGAT-GT----TATGAACAC--AGGGG--TATT---CATGC---ATTATG--TCGCCAAATCTCGTTTTC--AAT-----TATC-CTAACTACCATTCATTTT-------GGA-G--GTACA----------A-ATCAAATTATGTC--T----TCGCATAATGAA--ATATC-G-CTA-T-AAAATGACAC-C--ATTCCCAGCGAA--TTGTGTT--TAA-ACT--TGTTGAAGTACTTGTG-A--A-TAAAG---G-------------AAAA-T-A-C----------TT-----GAAACTTTACTTCA-AA-CTGCAAAT------AT-TTTAA-TT-------CAAGTGCAT-----ATTTTGTAT------TCAAAACATAAAAA-A-A-C------AT-------C---TAAGGTTAT----ATAAT----GCTTACATTT-------TGTGTATAAGAAATATATTGCC----AGCTGTGA------AATT-TG------------------TC--GCATGCTA-CT-TT--ATC-----AATA-TTAGAAGA---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-AT
gi|16 : aatttgaatgATC--TCGTAACATCTCGTTTTC--AAT-----TATC-TT-----CCATTCGTCTG-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAAAATGAA--AT-TC-T-C-A-TAAAAACAATAC-CA--TTCACAGAAAT--GTGTGTT--TAA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATAT-TATACTG-CGGCTAAAA-TAA-CGA-C-A-AA-TA-ACGATAAATTTTCCTTCA-AA-TCTC-AAT------ATTTTTAA-CT-------CAAG---ATC----ATTTTACTT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGAGTAC----ATACA----ACTTACAGTT-------TTTGTACAAAAAACCAGATGCATGTGAAGTATGAATGATTAATT-TGCCAAA-C-TCTTAATCCTTC--GTGTGCTG-TC-TT--ATCATTTTAACATTTAGTCAG---GAGATGCAAGTTTCCTGTCCTTTTTT--ACA-A-GTTCTTtat
gi|17 : -CAAGAA-----------CTTGTATAGAG-------A-----AA-G--G-A-GAGCAACTG-ATTG--CGAT-TT----TGTA-----------------T---CACTC---AAAATC---------ATCTTGTTTTTTAAAT-----TA
gi|17 : agATT-TCATCTTCCATTCTTCTT-------AGG-T--ATGCA----------T-ACCAAA--AC-TG--TGACATTACAGAAGGAA--AT-T--T-C-ACTCATAATGGGAT-CA--CCCCCAGTAATGCTTGTATG--TGA---T--TGTTGAAGTTCT-ATGCATTA-CAAAAATTGTACACTA-CCACTAAAAACAA-GAA-C-AGAA-CT-TCTTGAATTTTGACTTTA-AA-T-TA-AAT------GTTTTTAA-TT-------CAAT---ACC----ATTTTG-------AA--AAAACA---TTATA-A-C------A-------------AATATCAT----ATACA----catgtattcttatttacatgttttttcattttatttacatggatttcatcttccattcttcttaggtatgcataccaaaactgtgacattacagaaggaaatttcactcataatgggatcacccccagtaatgcttgtatgtgattgttgaagttctatgcattacaaaaattgtacactaccactaaaaacaagaacagaacttcttgaattttgactttaaattaaatgtttttaattcaataccattttgaaaaaacattataacaaatatcatatacactaagccatataaatacacaacattattag
gi|18 : agcaagaacttgtatagagaaaggagagcaactgattgcgattttgtatcactcaaaatcatcttgttttttaaattacatgtattcttatttacatgttttttcattttatttacatggG-------A-----AG-A--A-A-G-GCTACCG-ATTG--ATAT-TT----TGTGAACGC--TCAC------------------------------AATATCTTGTTTTC--AATAATATTATC-TTAACTTCCATTCATCTC-------AGG-A--ACACC----------A-ATCAAA--AT-TC--TTGCATTGCAGAATGAA--AT-TT-T-C-A-TCAAAACAATATACA-A---CTAACATT--TTATGTctaagccatataaatacacaacattattag
gi|18 : cagtgataaatacattggcaataccaatT-------CAAA---AT------TCTTGCATTGCAGAATGAAAT---TTT------C------AT-------C----AAAACAAT----ATACA----ACTAACATTT-------TATGTACAAGAAATCAGTTGCCTGCAAATTATGAATGATTA-TT-TACCAAA-T-AATTAATCCTTC--ATGTGTTA-TT-TA--ATC-----AACTTTTAGTCAG---TAGATGCAAGTTTCTTATCCATCTAT--ATA-A-GTCCTTG---GT----acaagaaatcagttgcctgcaaattatgaatgattatttaccaaataattaatccttcatgtgttatttaatcaacttttagtcagtagatgcaagtttcttatccatctatataagtccttggtgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|19 : cagtgataaatacattggcaataccaatgaagaaaggctaccgattgatattttgtgaacgctcacaatatcttgttttcaataatattatcttaacttccattcatctcaggaacaccaa-TAG-TAA-T-A-AAGCT-ACTTGAAATTTTACGTTA-AA-ATGT-AAT------ATTTTTAA-TT-------CAAG---ATC----ATTGTTCAA----TATCAAAACAT-TCTA-ATA-C------AT-------C---TAACGTTACCATGATACA----ATTTACATTTAACTTTTTATGTACAAGAAAGCCATTGTCTGTGAATTCTGAATGATTACTT-TGCCAAA-T-AACGAATCCTTT--GTGTGTGA-TT-TTTCATC-----AACATTTAGT------------CAAGTTTCCTAACCTTCTAT--GTA-A-AGCATTA---AT----Tgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|2 : ttataagtccttgatac-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GTAACTA-ATTG--AGAT-TT-----GTGAACAC--TTTTT--CATT---TACGC---AAAATC--TTGCAATAT-------------------TATC-TT-----TCATTTATCTA-------GGGGA--ACCCA----------A-ATCAAA--AT-TC--TTACATTGCAGAATAAA--AT-TT-T-A-A-CCAAAACAAGAC-TA--TTCCCAGCTGT--TTGT-TT--TAT-GAT--TGTTGAAATACTTATA-ATTA-CAAAATGTGTTTACTG-CAAATAAAA-TAA-CAG-----AA-TT-GCGAGAAATTTTACT--A-AA-C-------------------AA-TT---------------------ACT-----------ATCTAAACATATCAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACGTTT-------TATGTACCA-AAAGCAGTTGCCTTTGAATTCTGAATGATTAATT-TACCGAA-T-AATTAATCCTTT--GTGCCCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATACAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---ATTGAGTTT--A-ACATCATT-TTCAAC-ACATT--TCAG---GTTATATGTGGCAT-ACTCAG--TTTTATTGgtgtgactatgaatcagtcgacgctgtgaaacagttcaccaggatgatttcaacatcttttaagaagaatccaaatcatata
gi|20 : tagtcagccactatagagagatcttcagatctctcctgtatttttttttgatggggt-CAAGGA-----------ATTATATAGAG-------A-----AA-G--A-AAG-GCATCTG-ATTG--ATAA-TT----TGTGACCGC--TCGCG--TATT---CATGC---AAAATC--TCAGAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCGTTCATCAC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGTAGAATGAA--AT-TC-T-C-T-TCAAAACAATAC-C--ATTTCCATCAAT--TTGTGTT--TAG-AAT--TGTTGAAGTACTTCTG-ATTT-CATAATctggaggataacttcagaataaatctgagtagaaccaccgtccttccactagcaacttaaagattttggagcgaacaggacctaatgattgtttattttaatata
gi|21 : agggtgagatttttatattccacaggatgaacttatgTCAAAA--CAG--T----TG-T-TGT-TTC--AAA-CAAGGA-----------ATTTTATAGAG-------A-----AG-GGAA-A-A-GCACCTT-GTTG--AGAT-TA----TGTGAAAGCATTTGCA--TA-----CATGC---AAATTC--TTGTTGAATTTTGTTTCC--AAT-----TATC-TGGGCTTCCAGTCATCTCATAGTAAAGG-AT-AGGGAGTGGGGAGGGA-AT-AAA--AT-TTTATTGCATTGCAGAATGAA--AT-TC-TCC-A-T-GAAATGAGA--TA-ATTCCCAGCAAC--TTGTATT--CAA-AAT--TGTcgcctcatacattgttttaataatagccttaaaatatatttttt
gi|22 : ttcttatatacttatcaagacataaactaaattaaacattgtcaggt-AAT------ATCTTTAA-TT-------TAAG---ATC----ATTGTGCGT----GATCGAATCATATTAA-A-A-C------AT-------T---TAAGGTTAC----ATCCA----A-TTACATTT-------TATGTACAAGAAAGCAGTTGTCTGTGAATTCTGAAAGGTTAATT-TGTCAAA-T--ATTAATCATTC--GTGTGCTATTT-TT--TTC-----AACATTTAGTCAG---GATATGCAAGTTTCCTATCCTTCTAT--GTA-A-GTGCTCG---GT----Tcaa
gi|23 : aaataaaattaatataaaatTTCG-ATTA-CAAAAATTCTATTTGG-TCGCTGAAA---A-CAA-C-ACAA-TT-ATTTGAAATTTTACTTCA-AA-CTGA-AAT------ATTTTTAA-TT--------AGG---G------ACTTT-CAT----CAT--AAA-ATATTCA--------------------------AAGATAAC----ATA----------ATATTT-------TATGTATAATAAATCAATTGTCTGTGAATTTTGAATAATTAAT-------------ATT-------------------TC-TT--AT-------GCATTTGGTC------AGATGCAAGTTTCCAATTCTTCTAT--ATA-gcaaactgtgccaagtcgagatatatttgaaaaaaat
gi|24 : -CAAAGA-----------ATTATGTTGAA-------ACAAATAT-A--A-A-A-TCAA-TGTATTG--AGAA-TT----TGTGAAAGA--ATATG--TATT---TAC-C----AAAT-----------TTTCATTTTG--AAT-----CATC-TTAGCTTCCAGTCATCGC-------AGG-ATTATACA----------A-AT--AA--AT-TTTATTACTTTG------------------------CAAAAC---------ATTCCCAACAAT--TTTTGTT--CAA-AATTGTGTTTAAATTCTATTG-ATTA-
gi|25 : aaatggtttTTTAGGTT-------TAAG---ATC----AGATTGATT----GATTGAAACACTATAA-A-A-CGCCAGTAT-------T---TTAGGTTAC----ATACA----ATTTACATTT-------CATGTACAAGAAAGCAGATGCCTGGGAATTCTTAATAGTTAACT-TGTAAAA-TATAATAAT-ATTC--CCATGCTA-TT-TG--ATC-----AACATTAAGTCAG---GAGA
gi|26 : tGATGCAAATTTCCTATCCTTCTAT--ATA-A-AT
gi|27 : ---GAGATGCAAGTTTCCTATCCT----T--ATA-A-GTCCTTG---ttaactgccgaatggtgtttcaatccaaatgtttatataactgcagtttgtttcctgatttaatgattaaagcgattatataacaattatatcgatttatataataaaaggtaaactatgtac
gi|27 : agaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTcgtagagagagatgcaagtttcctatccttattagtccttaggtagagagagatgcaagtttcctatccttattagtcctt
gi|27 : agagagagatgcaagtttcctatccttataagtccttgcgtagagaCTA-TCCTT--ATT-----AGTCCTTAGGTAGAGAGAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTaggtagagagagatgcaagtttcctatccttattagtcctt
gi|28 : agagagagatgcaagtttcctatccttataagtccttgcgtagagagagatgcaagtttc--TAC-CAAGGA-----------ATTATATACAG-------A-----AG-G--A-AAG-GCAGCTG-ACTG--AGAT-TT----TGTGAATGC--TTGC-----TT---TACTA---AAAAT
gi|3 : taTCATTTATCAATTTG-GCTCATTAAAATTCCA--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACCC--CCACG--TATT---CATGC---AAAATC--TCGCAATATCTTGTTTTT--CAT-----TATC-TTAACTTCTGTTCATCTC-------AGG-G--ACACA----------A-ATCAAA--AT-TC--TTACTCTGCAGAAGGAA--AT-TA-T-C-A-TAAAAAAAATAC-CA-ATTCCCAGAAAT--TTGTGTT--TTA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATTTATATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACAAGAAACTTTTCTTCA-AA-CCTC-AAT------ATCTTTCA-TT-------CAAG---ATC----ATTTTGCTT----GATCGAAACATGTTTA-A-A-C------AT-------C---AACGATTAC----ATACA----AATTA-AGTT-------TATGTACAAGAAATCAGTTGCATGTGAATTATGAATGATTAATT-TGCCAAA-T-TATTAATTCTTT--GTGTTCTA-TT-TT--CTC-----AACATTTAGCCAG---CAGATGCAAGTTTCCTATCCTTCTAT--ACA-A-GCCCTTG---AT----TTT--ACATATGGTGACTCAATGAT-TGCGTCAA---ATTA-ACTCAAAATGAAT--GCATTTCAATGACagtccaaaacttaaaaaatcttcttctcttgaacggccc
gi|30 : aaatgcattga--TATCTTA-T-TA--TTT--TGCACAAAGA-----------CTTATATGGAG-------A-----AG-G--A-A-ATGCAACTC-GTTT--ACGT-TTGAAATATAA---C--TAGCG--TACT---CATGCGTAAAAATtgaatttaagcatcagatttgtagataaaacactgcacagtat
gi|32 : tta---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTG---
gi|32 : tagaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTggtagagagagatgcaagtttcctatccttattagtcctt
gi|34 : tagagagagatgcaagtttcctatccttattagtccttgggtagaga---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---GT----
gi|34 : ga---GAGGTGCAAGTTTCCTATCCTTCTagagagaggtgcaagtttcctatccttct
gi|35 : gagaggtgcaagtttcctatccttctatataagtccttggtagagaAAGTACTTTTG-ATTA-CAAAATGTGTATACTG-CAACTAAAA-AAT-CAA-
gi|36 : CAGA--GAGATGCAAGTTTCCTAgtgaagtacttgtgatt
gi|36 : aACATTTAGTAGA---GAGATGCAAGTT-----TCCTTCTAT--ATA-A-GTCcatttagtagagagatgcaagtttccttctatataagtc
gi|37 : acagagagatgcaagtttcct---GAGAAGCAAATTTCCTATCCTTCTAT--ATA-A-GTCCTTG---
gi|4 : gaTTCACCGGAA--CCTATTATTATG-T-TCA-TTT------CAAGGA-----------ATTACATAGAG-------A-----AG-G--A-AAG-GCAATTG-ATTG--ATAT-TT----TGTGAACGT--TCGCG--TATT---CATGC---AAAATT--TCACAATATCTCGTTTTC--A-T-----TATC-TTAATTTCCATTCATCTC-------AGT-A--ACACA----------A-ATCAAA--GT-TC--TTACATTGCAGAATGAA--CT-TC-T-C-A-TAAAAA-------------------AAT----GTGTT--TAA-TAG--TGTTGAAGTACCTCTG-ATTA-CAAAGTTTGTATACTG-CAACTAAAA-TAA-CAA-C-A-AT-TT-ACAAGAACTTTTACTTCA-A-------------------------------------G---ATA----ATTTTTCGT----GATCATAACA-ATTTA-TTA-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGTAATCAGTTGCCTTTACACTATGAATGGTTAATT-TTCCAAA-T-AACTAATCCTTC---TGTGCTA-TT-TC--ATC-----AACATTAAGTCAG---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---GT----TCT--gatatgcaagaacaataagt
gi|40 : taacacgtagttaagtcacacgtgtacacaaataatgtacatactcgctgaaataaaatgatat--TAT-CAAGGA-----------ATTATATAGGG-------A-----AG-G--A-A-ATGCAAATG-tttgaagtgtattttggatatacatcataaaacgagtaataaaagattcattgttaaaaattccaggtcattcc
gi|41 : aaaca--TAC-CAAGGA-----------ATTATATGGAG-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ttgtacactcgcg
gi|42 : --TAC-CAAGGA-----------ATTATATAGAA-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ta
gi|43 : AGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTA--ACAa
gi|44 : ---GAGATGGAAGTTTCCTATCCTTCTAT--ATATATGTCCTTG---
gi|46 : aGAAGCAAGTTTCCTATCATTCTAT--ATA-C-ATCCTTG---
gi|47 : gagtTTGGTAGA---GAGTTGCAAGTTTTCTATCCTTCTAT--
gi|48 : agtcc-CAAGGA-----------CTTATATAGAG-------A-----AGAA--A-A-A-GCAACTG-TTT
gi|5 : gagTCATTTAT----TTGAGTTCATCGACA--CTG--TTTTATA-TATAA-A-----AA-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AAAG-TT----TGTGAACGC--TTGCG--TATC---CACGT---AAAATC--TTGTAATATCTCATTTTT--AAT-----TATC-TTCGCCTCCATTTATCCC-------AGG-A--ACACA----------A-ATTACAT-AT-T---TTACACTGCAAAATGAA--AT-TG-C-A-A-TCAAAACAATAC-C--ATACCC-GAAAT--GTGTGTT--TAT-AAT--TGCTGAAGTCCTTGTG-ATTA-C-ATATGTGTATACTG-CAGCTAATA-TAA-CGA-C-A-AA-TT-AC--GAAATTTT----------CCTC------------------------------------------ATTTTGCGT----GATCGAAACATGTTAA-A-A-C------AT-------C---TAGGATTAC----ATACA----ACTTACAGTC-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTTATT-CA-CAAA-T-TACGAATCTTTT--GTGTGCTG-TT-TT--ATC-----AACATATAGTCAG---GAGATGCAAGTTTCCTATCCTT
gi|6 : gatactgttgatcatccggctttggattaaattttagatttttaac-TGA-CTT--TATTCTAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATACAACTG-ATTG--AGAT-TT----TCTGAATGC--TTGCA--CATT---CATGC---AAAATC--TCGCAGTATCTCATTTTC--AAT-----TAAC-TTAACCTCCATTCATC------------------------------------AAA--AT-TC--TTGCTTTGCAGAATGAA--AT-TC-T-C-A-ACGAACCAATAC-CA--TTCCCAGCAAT--TTGAGTT--AAA-AAT--TGTTAAAGTACTCCTA-ATTA-CAAAATTTGTATACTG-CAGGCAAGA-TAA-CAA-TGA-AA-TT-GTGAGTAAATTTACTTCC-AA-CCTC-AAT------ATCTTTAT-TT-------CAAG---ATC----ATTTTATTT----GATCAAAGCATATTAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ATTTACAGGT-------TATGTACAAGAAA-CAGTTGCCTGTGAATTCTGAATCATTAATA-TGCCAAA-T-AACTAATCCTTT--GTGTGCTA-TT-TA--ATC-----AACATAAAGTCAG---AAGATGCAAATTTCCTATCCCTCTAT--ATA-A-GTCCTTgataaaaataaacaaatattaaaataaagttatgttatataaatcaatttatattttattactacgaataac
gi|7 : aaaatttaatctcttaaattgtattttgaaaaaaaccGTTTTT--AAT-----TATC-TTCACTTCCATTCATCTC-------AGG-A--ACACA----------A-AACAAA--AT-TC--TTACACTGCAGAATAAA--AT-TG-T-C-A-TCAAAACAATAC-CA---TTGCGGGAAT--TTGTGTT--TAA-AAT--ATTTTAAGTACTTCTG-ATTA-CAAATTGTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-GT-TT-ACAATAATTTTT-TTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---AGC----ATTTTGTGT----AATTGAAACATGTTTT-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACAGTT-------TATGTACAAGAAATCAGTTGCCTATGAATTATGAATGATTAATT-TG-TAAT-T-TATGAAGCTTTC--GTGGGCTG-TT-TC--ATC-----AACATTTAGTTAG---GGGATGCAAGTTTCCTATCCT--TAT--ACA-A-GTCCTTG---GT----TAT--ACcctataatataatgttttatttctattatataaaatagtttctacttttaataaagcacatacaagcttgaatttaaaat
gi|8 : tC-TAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AGGT-TT----CGTAAACGC--TCGCG--TATT---CACAC---AAAATC--T-----TAT-----------AAT------ATC-TTAACTTCAATTCATCTC-------AGG-A--ACTCA----------A-ATCAAA--CT-TC--TAACATTGCAGAATGAA--AT-TC-T---A-TCAAAACAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTAAAGTACTTCTG-ATTA-CAAAATGGGTGGACT--TAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATATTTAA-TT-------CAAG---ACC----ATTTTA----------------------A-A-A-C------AT-------T---TAAAATTGC----ATACAACTGACTTACATTT-------TATATACAAGAAATCAGTAGCTTGTGAACTATGAAAGATTAATT-TGCCAAA-T-AATCAATTCTTCGTGTGTGTTA-TT-TT--ATC-----AACATTTAGTCAT---GAAATGCAAGCTTCCTATCCTTCTAT--ATA-A-GTCCtcatgtgcagattcatgtcctatataagatcatttatcttcgtccatcacgaaaactgattgccatatataaccttttgggtgcgttgataatggtgttaaaccaagtagaaaaaaaaaaattatgaaagaactgtgaagcaaagtgccaaaatgtggtcatgtggaaatgatatgattgtga
gi|9 : tgattagtttacatttgcataatcaagacacttgtatgaataattcatgtatttataacaaaacaaacatttgacattcgaatgaactgagcccgtgtggttccggAAGTTGCCTTTCCTTCTCTCTATA-A-GTCCTTG---CT----ATC--GCTTAGTGTCAATAAATGAT-TTC--CAGTTTATTA-A-ATATAAT-ATT--A--TTATATT
gi|9 : atttgcacgaaataaaatat--TAG-CAAGGA-----------CTTATAGAGAG-------A-----AG-G--A-AAG-GCAACTT-ATTT--AGAT-GG----TATGAATGC--TCGCA--TATT---CATGC---AAAATC---------A---CGTTTTC--AAA-----TATC-AGGACTGCCATACATCTC-------ATA-A--ATACA----------A-ATTAAA--AT-GT--TTTCTTTGCACAATGGA--GC-TCCT-T-A--CAAAATGAGAC-CA--TTCCCATCAAA--TTGTGTG--TAA-AAT--TGTTGAAGTACTTATG-ATTA-CAAAATTTGTATACTG-CAACTAAAA-TAT-TAA-GGA-AA-GT-ACTTAAAATTATACTTCA-AA-CTGC-AAT------ATTTTAAA-TT-------CAAG---ATC----ATTTTGCGT----GTTTAAAACATACA-A-A-A-C------AT-------C---TAGGGTTAC----ACAGA----TCCTACATTT-------TATGAAAAAGAAATCAGTTGCCTGTGAA------------AATT-AG--AAACT-TATTAATTCTTA--GTATGCTA-TT-TT--ATA-----AACATTTAGTAGA---GAGATGCAAGTTTCCAATCCTTCGAT--ATA-A-GTCCTTatttagatggtatgaatgctcgcatattcatgcaaaatcacgttttcaaatatcaggactgccatacatctcataaatacaaattaaaatgttttctttgcacaatggagctccttacaaaatgagaccattcccatcaaattgtgtgtaaaattgttgaagtacttatgattacaaaatttgtatactgcaactaaaatattaaggaaagtacttaaaattatacttcaaactgcaatattttaaattcaagatcattttgcgtgtttaaaacatacaaaacatctagggttacacagatcctacattttatgaaaaagaaatcagttgcctgtgaaaattagaaacttattaattcttagtatgctattttataaacatttagtagagagatgcaagtttccaatccttcgatataagtcctt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TAAGCCCATTTGAAGAGTGTAACGTAATTACATGTTATATTTGACGCCCAGCTTTATTGCAGGAGAAATAACTGCGGATAAACCTTAGTATAACCACCTTGCACTTGCAA
Unaligned ( gi|31 ): ATTTATTTTCAAAATAGCATTTGATCTTCTATTATTTCTATTTGGCCTCAAGCACTCAGTCATGGGTTTTTTTATTGATCAAGG
Unaligned ( gi|33 ): GCAATATTCTAAATACAAGACAATTTTGCAAGTTTAAAATTTTATAAAACAACTAATATTACATACACCTT
Unaligned ( gi|38 ): GTTTGTTATCAAATTCCTTCAATGAACCTATATACATGTATTTACTTATTTTTT
Unaligned ( gi|39 ): GGCTCACTGGCTTTCTTTTTAATGATATGCATTTGTCAATTGCGAGTAGTTCA
Unaligned ( gi|45 ): ATCAAATCAAAATAGCATTCTTTTTTTTTATAGTCAATT
Unaligned ( gi|49 ): TACATTTATATTTGACATCCAGTTTTATTGCAGGA
Alignments
lowQualScore : 2222 1 1111111 222 222 111 111111111 111111111 111111 22222222 11 1 22222
lowQualScore : 4444 5 5555555 6 5 4 4 33 55 88888888888 5555555 44444 1 55 1 000 1 55 1 4444 22 0 444 333 333 999999 22 44444 1 1 6666666 1 44 8888888888 1 44 1 55 22 1 1 666 1 4 1 1 222 22 22 2 22 1 1 1 2 2 2 2 111 4 2 2 88 1 2 2 33 2 555555 6 1 66666666 333 66666 444444444 11 77 2 1 5 1 555555 5555555 333 3333 3333 1 6666666 2 1 5 1 66 22 1 1 22 44444 333 11 1 1 333 666666666 0 2 111111 3 8 00000000 8 00 1 0 0 11111
lowQualScore : .... . ....... . . . . .. .. ........... ....... ..... . .. . ... . .. . .... .. . ... ... ... ...... .. ..... . . ....... . .. .......... . .. . .. .. . . ... . . . . ... .. .. . .. . . . . . . . ... . . . .. . . . .. . ...... . . ........ ... ..... ......... .. .. . . . . ...... ....... ... .... .... . ....... . . . . .. .. . . .. ..... ... .. . . ... ......... . . ...... . . ........ . .. . . . .....
lowQualScore : 0000 5 2222222 0 0 4 4 99 66 66666666666 7777777 33333 7 66 7 444 7 00 8 2222 88 6 222 333 333 111111 66 88888 9 7 2222222 9 55 3333333333 9 55 9 22 66 9 9 000 9 2 0 9 333 66 88 0 88 0 9 9 5 1 0 0 777 2 1 1 77 3 1 1 22 0 888888 0 9 00000000 222 77777 000000000 22 00 8 8 5 8 222222 9999999 222 9999 9999 3 2222222 2 9 4 9 11 88 9 9 66 55555 444 88 3 4 777 555555555 1 7 888888 2 0 00000000 0 88 2 0 2 55555
consensus : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTT--ACATATCGTNACTCGACGAC-TTCGTCAG---ATTA-ACGCAAAAT-ACT--G--TTTTATTGAC
Reference ( family-1489 ) : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTT--ACATATCGTNACTCGACGAC-TTCGTCAG---ATTA-ACGCAAAAT-ACT--G--TTTTATTGAC
gi|1 : -----AACATTCAATCAG---T---TGCA--TTTCCT-TC--TCTAT--ATA-A-TTCCTTG---ATAAGATTTA-ACAT-TTGTGAC---ATAAC-TTCGTC-----ATTA-A
gi|1 : catttatggaacatgaatgacaaaatcgtagatattaagtATG-T-TAAATCT--TAT-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATGCAACTG-ATTG--A-ATGTT----TGTGAACGC--TCGCG--TATT---CACGT---AAAATC--TTGCAATATCTCGTTTTC--AAT-----TATC-CTAAATTCCATTCACCTC-------AGG-A--ACAAA----------A-ATCAAA--AT-TC--TTTCATTGCAGAATGAA--AC-TC-T-C-A-TCAAAATAATAC-C--ATTCCCAACAAT--TTGCGTT--TAA-AAT--TGTTGAAGTGAATCTG-AATA-CAAAATTTGTATACCG-CAGCTAAAA-TAA-CGA-C-A-AA-TGAACGAGAACTTTTCCTTCA-AA-TCTC-AAA------ATCTTTAA-TT-------CAAG---ATC----GTTTTGCAT----GATCGAAACATGTTTA-T-A-C------AT-------C---AAAGATTGA----ATACA----ACTTACAGTT-------TATGT-TAAGAAATCAACTGCCTGTGAGTTATGAATGAGTAATT-TGCCAAA-T-AATGAATCCTTC--GTGTGCTG-TT-TC--ATC-----AACATTTAGTCAG---AAGAGACAAGTTTCCTATCCTTCTAT--GCA-A-GTCCTTG---AT----------CATATTGtgtgaacgctcgcgtattcacgtaaaatcttgcaatatctcgttttcaattatcctaaattccattcacctcaggaacaaaaatcaaaattctttcattgcagaatgaaactctcatcaaaataataccattcccaacaatttgcgtttaaaattgttgaagtgaatctgaatacaaaatttgtataccgcagctaaaataacgacaaatgaacgagaacttttccttcaaatctcaaaatctttaattcaagatcgttttgcatgatcgaaacatgtttatacatcaaagattgaatacaacttacagtttatgttaagaaatcaactgcctgtgagttatgaatgagtaatttgccaaataatgaatccttcgtgtgctgtttcatcaacatttagtcagaagagacaagtttcctatccttctatgcaagtccttgatcatattgagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|10 : catttatggaacatgaatgacaaaatcgtagatattaagtttaatgacgaagttatgtcacaa-CATGGA-----------CTTATATAGAG-------A-----AG-G--A-A-ACGCAACTG-ATAG--CGGT-GG----TATGAACGC--TCGCGCGTATT---CACGA---AAAAAAAATCGAGACATTTCGTCTCC--AAA-----TGTCCTTAACTTCAATTCATCTC-------AGG-A--ACAAA----------ATATCAAA--AT-TC--TTCCTTTGCACAACAAAACAT-TC-T---A--CAAACCGAGGC-C--ATTCACAGCAAC--TTGTGTT--TAA-AAT--TGTTTAAGTACTTATG-AATA-TAAAATGTGTATACTG-CCACCGTAA-TCATCAAGG-A-AA-GA-ACTTGAAA-TTTACTTCA-AA-CTGC-AATCAAGGAAT-TCGAA-TTATTGCTGCAAT---ATTTTAAATTTCATAT----AATTAAAGCGTGTATA-A-A-C------ATAATAAAACACATAAGGTTAC----ATAAA----CCTTAACGTT-------CATGTTTATGAA--CACTTGCCTGTAAAATTTGAATGATTAATTATATTATA-T-AATTAagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|11 : aataatatgtcgtttacaacaattgccgtttgtcttccctatctgattctcttggttaggaG-G--A-A-A-GCAACCG-A-------AT--------GTGAGTGC--TTGCA--TATTATTTACGG---AAAATC--TAGTAATAACTGGTTTTC--CAT-----GATG-TTAACTTCC-TTCATCTC-------AGG-A--ACACA----------A-ATCAGA--AT-TC--TTACATTGCAAAATGAA--AT-TC-T-A-A-TCAAATCAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTCTG-ATTTTCAAAATTTGTATACAG-TAGCTAAAA-TAA-CAA---A-AA-TT-GAGAAAAATTT-ACTTCA-AA-CCTC-AAT------ATTTTTAT-TT-------TAAG---ATC----ATTTTACAA----GATCGAAACAT-TTTA-A-ATC------AT-------C---TAAGATTAC----ATACA---------C-----------------CAAGAAATCAGA-------AAATTATGAATGACTA-TT-TACCAAA-T-AATTAATCCTTT--GTGAGCTA-TT-TT--ATC-----AACAATTAGTAAG---AAGATACAAG--TCCTATCCTTCTAT--ATA-A-GTCCTGGTTTAT----TTTTAACATATTTTTATTTGACGAC-TTCA-CAA---GTTC-ATGCAAAGT-ACT--G--TTTTATTGACtatagaca
gi|12 : gtggagggacagccTT---TACAC---AAAATC--ACGCAATGTCTC-------------------C-TT---TTCCATCCATCTC-------AGG-A--CAATA----------A-ATACAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-C-A-A-TCAAAGCAATAC-CATAT--CCAGCAAT--TTGTGTT--TAG-CAT--TAATGAAATAATTCTG-ATTT-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCACAATCCGC-AAT------ATCTTTCA-TT-------AAAG---ATA----ATTTTTCGT----GATCGAAACATTTTCA-A-T-C------AT-------C---TAAGAATAC----ATACA----ACTTGCATTT-------TATGTACAAGAAATCTGCTGCTTGTAAATTATGAATGATT-ATT-TACCAAA-T-AATTAATCCTTC--GCATGCTG-TT-TT--ATC-----AACATTTA--------GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTA--ACA-ATCG
gi|13 : TATAAT-TAA-TTTATTAT-CAAGAACAGAGAGTCGTATCATATACACTTATACTA-----AG-G--ACA-G-GCAACTG-ATTG--AGGT---------------------CA--TATT---CACGC---TAAAT-------AAT-----GTTTTC--AAT-----GATC-TTAACTT---TT--TCT-----------------------------------------------TTGCATT-TATAACGAA--AT-TC-T-T-T-ACAAAACAAAAC-CA--TTCATAGTAAA--TTGTGTT--TAC-AAT--TGTTGAAGTACTCATG-ATTG-CATAATTTGTATACTGACACTTAAAA--AA-CAAGA-A-AA-GT-ACTTGAAATCTCACTTCA-AA-CCGC-AAT------GTAAGAAG-TT-------CAAT---ATT----ATTTTG---------------TATGTTTA-AGA-C------AT-------C---TAAGGTAAC----ATACA----GCTGACATTT-------TAAGCATAAGAATTCAGTTTCATGTGGAATCTGAATGATTAAAA-TACTAAT-T-TATTAGTTCTTC--CTGCACTA-TT-TT--ATC-----AACATTgtaggattacttatattaaaactgttgacgtcccataaaacgggcaatgcatgtcatatttacgat
gi|14 : gtatccaccttgtctacagatttattttttgtca-CAAGGA-----------ATTATATAGAG-------A-----AG-A--A-AAG-GCAACTG-ATTG--AGAT-TA----TGTGAACGC--TCGCG--TATT---CAAGC---AAAATC--TCGCAATATCTCATTAAT--AAT-----GTTC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAGAATGAA--AT-TG-T-C-A-TCAAAACAATGC-C--ATTCCCAGAAAT--GTGTGGTAACAATAAT--TGTTGAAGTACTTGTG-ATTA-CAAAATGTGTATTCTG-CAGCTAA--------------------------AAATTTCCCTTCA-AA-CCTT-AAT------ATCTTTAA-TT-------CAA-----------------------------AAACA--TTTA-A-A-------------------------ATTAC----ACACA----ACTTACAGTT-------TATGTATAAGAAATCAGTTGCCTGCGAGTTATAAATGATCGATT-TG-CAAA-T-TATGAATTTTTC--GTGTGCTG-TT-TC--ATC-----AACATTTAGTCAC---GAGATGCAAgacgtgtcatgtatat
gi|15 : ttttgaacaggcatagaatttcctgcttttttttcattagcagttaaaagacaA-T-TAA-TTA--TAT-TATATA-----------ATTATATAGA---------------------------CA-C---ATTG--AGAT-GT----TATGAACAC--AGGGG--TATT---CATGC---ATTATG--TCGCCAAATCTCGTTTTC--AAT-----TATC-CTAACTACCATTCATTTT-------GGA-G--GTACA----------A-ATCAAATTATGTC--T----TCGCATAATGAA--ATATC-G-CTA-T-AAAATGACAC-C--ATTCCCAGCGAA--TTGTGTT--TAA-ACT--TGTTGAAGTACTTGTG-A--A-TAAAG---G-------------AAAA-T-A-C----------TT-----GAAACTTTACTTCA-AA-CTGCAAAT------AT-TTTAA-TT-------CAAGTGCAT-----ATTTTGTAT------TCAAAACATAAAAA-A-A-C------AT-------C---TAAGGTTAT----ATAAT----GCTTACATTT-------TGTGTATAAGAAATATATTGCC----AGCTGTGA------AATT-TG------------------TC--GCATGCTA-CT-TT--ATC-----AATA-TTAGAAGA---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-AT
gi|16 : aatttgaatgATC--TCGTAACATCTCGTTTTC--AAT-----TATC-TT-----CCATTCGTCTG-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAAAATGAA--AT-TC-T-C-A-TAAAAACAATAC-CA--TTCACAGAAAT--GTGTGTT--TAA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATAT-TATACTG-CGGCTAAAA-TAA-CGA-C-A-AA-TA-ACGATAAATTTTCCTTCA-AA-TCTC-AAT------ATTTTTAA-CT-------CAAG---ATC----ATTTTACTT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGAGTAC----ATACA----ACTTACAGTT-------TTTGTACAAAAAACCAGATGCATGTGAAGTATGAATGATTAATT-TGCCAAA-C-TCTTAATCCTTC--GTGTGCTG-TC-TT--ATCATTTTAACATTTAGTCAG---GAGATGCAAGTTTCCTGTCCTTTTTT--ACA-A-GTTCTTtat
gi|17 : -CAAGAA-----------CTTGTATAGAG-------A-----AA-G--G-A-GAGCAACTG-ATTG--CGAT-TT----TGTA-----------------T---CACTC---AAAATC---------ATCTTGTTTTTTAAAT-----TA
gi|17 : agATT-TCATCTTCCATTCTTCTT-------AGG-T--ATGCA----------T-ACCAAA--AC-TG--TGACATTACAGAAGGAA--AT-T--T-C-ACTCATAATGGGAT-CA--CCCCCAGTAATGCTTGTATG--TGA---T--TGTTGAAGTTCT-ATGCATTA-CAAAAATTGTACACTA-CCACTAAAAACAA-GAA-C-AGAA-CT-TCTTGAATTTTGACTTTA-AA-T-TA-AAT------GTTTTTAA-TT-------CAAT---ACC----ATTTTG-------AA--AAAACA---TTATA-A-C------A-------------AATATCAT----ATACA----catgtattcttatttacatgttttttcattttatttacatggatttcatcttccattcttcttaggtatgcataccaaaactgtgacattacagaaggaaatttcactcataatgggatcacccccagtaatgcttgtatgtgattgttgaagttctatgcattacaaaaattgtacactaccactaaaaacaagaacagaacttcttgaattttgactttaaattaaatgtttttaattcaataccattttgaaaaaacattataacaaatatcatatacactaagccatataaatacacaacattattag
gi|18 : agcaagaacttgtatagagaaaggagagcaactgattgcgattttgtatcactcaaaatcatcttgttttttaaattacatgtattcttatttacatgttttttcattttatttacatggG-------A-----AG-A--A-A-G-GCTACCG-ATTG--ATAT-TT----TGTGAACGC--TCAC------------------------------AATATCTTGTTTTC--AATAATATTATC-TTAACTTCCATTCATCTC-------AGG-A--ACACC----------A-ATCAAA--AT-TC--TTGCATTGCAGAATGAA--AT-TT-T-C-A-TCAAAACAATATACA-A---CTAACATT--TTATGTctaagccatataaatacacaacattattag
gi|18 : cagtgataaatacattggcaataccaatT-------CAAA---AT------TCTTGCATTGCAGAATGAAAT---TTT------C------AT-------C----AAAACAAT----ATACA----ACTAACATTT-------TATGTACAAGAAATCAGTTGCCTGCAAATTATGAATGATTA-TT-TACCAAA-T-AATTAATCCTTC--ATGTGTTA-TT-TA--ATC-----AACTTTTAGTCAG---TAGATGCAAGTTTCTTATCCATCTAT--ATA-A-GTCCTTG---GT----acaagaaatcagttgcctgcaaattatgaatgattatttaccaaataattaatccttcatgtgttatttaatcaacttttagtcagtagatgcaagtttcttatccatctatataagtccttggtgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|19 : cagtgataaatacattggcaataccaatgaagaaaggctaccgattgatattttgtgaacgctcacaatatcttgttttcaataatattatcttaacttccattcatctcaggaacaccaa-TAG-TAA-T-A-AAGCT-ACTTGAAATTTTACGTTA-AA-ATGT-AAT------ATTTTTAA-TT-------CAAG---ATC----ATTGTTCAA----TATCAAAACAT-TCTA-ATA-C------AT-------C---TAACGTTACCATGATACA----ATTTACATTTAACTTTTTATGTACAAGAAAGCCATTGTCTGTGAATTCTGAATGATTACTT-TGCCAAA-T-AACGAATCCTTT--GTGTGTGA-TT-TTTCATC-----AACATTTAGT------------CAAGTTTCCTAACCTTCTAT--GTA-A-AGCATTA---AT----Tgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|2 : ttataagtccttgatac-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GTAACTA-ATTG--AGAT-TT-----GTGAACAC--TTTTT--CATT---TACGC---AAAATC--TTGCAATAT-------------------TATC-TT-----TCATTTATCTA-------GGGGA--ACCCA----------A-ATCAAA--AT-TC--TTACATTGCAGAATAAA--AT-TT-T-A-A-CCAAAACAAGAC-TA--TTCCCAGCTGT--TTGT-TT--TAT-GAT--TGTTGAAATACTTATA-ATTA-CAAAATGTGTTTACTG-CAAATAAAA-TAA-CAG-----AA-TT-GCGAGAAATTTTACT--A-AA-C-------------------AA-TT---------------------ACT-----------ATCTAAACATATCAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACGTTT-------TATGTACCA-AAAGCAGTTGCCTTTGAATTCTGAATGATTAATT-TACCGAA-T-AATTAATCCTTT--GTGCCCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATACAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---ATTGAGTTT--A-ACATCATT-TTCAAC-ACATT--TCAG---GTTATATGTGGCAT-ACTCAG--TTTTATTGgtgtgactatgaatcagtcgacgctgtgaaacagttcaccaggatgatttcaacatcttttaagaagaatccaaatcatata
gi|20 : tagtcagccactatagagagatcttcagatctctcctgtatttttttttgatggggt-CAAGGA-----------ATTATATAGAG-------A-----AA-G--A-AAG-GCATCTG-ATTG--ATAA-TT----TGTGACCGC--TCGCG--TATT---CATGC---AAAATC--TCAGAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCGTTCATCAC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGTAGAATGAA--AT-TC-T-C-T-TCAAAACAATAC-C--ATTTCCATCAAT--TTGTGTT--TAG-AAT--TGTTGAAGTACTTCTG-ATTT-CATAATctggaggataacttcagaataaatctgagtagaaccaccgtccttccactagcaacttaaagattttggagcgaacaggacctaatgattgtttattttaatata
gi|21 : agggtgagatttttatattccacaggatgaacttatgTCAAAA--CAG--T----TG-T-TGT-TTC--AAA-CAAGGA-----------ATTTTATAGAG-------A-----AG-GGAA-A-A-GCACCTT-GTTG--AGAT-TA----TGTGAAAGCATTTGCA--TA-----CATGC---AAATTC--TTGTTGAATTTTGTTTCC--AAT-----TATC-TGGGCTTCCAGTCATCTCATAGTAAAGG-AT-AGGGAGTGGGGAGGGA-AT-AAA--AT-TTTATTGCATTGCAGAATGAA--AT-TC-TCC-A-T-GAAATGAGA--TA-ATTCCCAGCAAC--TTGTATT--CAA-AAT--TGTcgcctcatacattgttttaataatagccttaaaatatatttttt
gi|22 : ttcttatatacttatcaagacataaactaaattaaacattgtcaggt-AAT------ATCTTTAA-TT-------TAAG---ATC----ATTGTGCGT----GATCGAATCATATTAA-A-A-C------AT-------T---TAAGGTTAC----ATCCA----A-TTACATTT-------TATGTACAAGAAAGCAGTTGTCTGTGAATTCTGAAAGGTTAATT-TGTCAAA-T--ATTAATCATTC--GTGTGCTATTT-TT--TTC-----AACATTTAGTCAG---GATATGCAAGTTTCCTATCCTTCTAT--GTA-A-GTGCTCG---GT----Tcaa
gi|23 : aaataaaattaatataaaatTTCG-ATTA-CAAAAATTCTATTTGG-TCGCTGAAA---A-CAA-C-ACAA-TT-ATTTGAAATTTTACTTCA-AA-CTGA-AAT------ATTTTTAA-TT--------AGG---G------ACTTT-CAT----CAT--AAA-ATATTCA--------------------------AAGATAAC----ATA----------ATATTT-------TATGTATAATAAATCAATTGTCTGTGAATTTTGAATAATTAAT-------------ATT-------------------TC-TT--AT-------GCATTTGGTC------AGATGCAAGTTTCCAATTCTTCTAT--ATA-gcaaactgtgccaagtcgagatatatttgaaaaaaat
gi|24 : -CAAAGA-----------ATTATGTTGAA-------ACAAATAT-A--A-A-A-TCAA-TGTATTG--AGAA-TT----TGTGAAAGA--ATATG--TATT---TAC-C----AAAT-----------TTTCATTTTG--AAT-----CATC-TTAGCTTCCAGTCATCGC-------AGG-ATTATACA----------A-AT--AA--AT-TTTATTACTTTG------------------------CAAAAC---------ATTCCCAACAAT--TTTTGTT--CAA-AATTGTGTTTAAATTCTATTG-ATTA-
gi|25 : aaatggtttTTTAGGTT-------TAAG---ATC----AGATTGATT----GATTGAAACACTATAA-A-A-CGCCAGTAT-------T---TTAGGTTAC----ATACA----ATTTACATTT-------CATGTACAAGAAAGCAGATGCCTGGGAATTCTTAATAGTTAACT-TGTAAAA-TATAATAAT-ATTC--CCATGCTA-TT-TG--ATC-----AACATTAAGTCAG---GAGA
gi|26 : tGATGCAAATTTCCTATCCTTCTAT--ATA-A-AT
gi|27 : ---GAGATGCAAGTTTCCTATCCT----T--ATA-A-GTCCTTG---ttaactgccgaatggtgtttcaatccaaatgtttatataactgcagtttgtttcctgatttaatgattaaagcgattatataacaattatatcgatttatataataaaaggtaaactatgtac
gi|27 : agaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTcgtagagagagatgcaagtttcctatccttattagtccttaggtagagagagatgcaagtttcctatccttattagtcctt
gi|27 : agagagagatgcaagtttcctatccttataagtccttgcgtagagaCTA-TCCTT--ATT-----AGTCCTTAGGTAGAGAGAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTaggtagagagagatgcaagtttcctatccttattagtcctt
gi|28 : agagagagatgcaagtttcctatccttataagtccttgcgtagagagagatgcaagtttc--TAC-CAAGGA-----------ATTATATACAG-------A-----AG-G--A-AAG-GCAGCTG-ACTG--AGAT-TT----TGTGAATGC--TTGC-----TT---TACTA---AAAAT
gi|3 : taTCATTTATCAATTTG-GCTCATTAAAATTCCA--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACCC--CCACG--TATT---CATGC---AAAATC--TCGCAATATCTTGTTTTT--CAT-----TATC-TTAACTTCTGTTCATCTC-------AGG-G--ACACA----------A-ATCAAA--AT-TC--TTACTCTGCAGAAGGAA--AT-TA-T-C-A-TAAAAAAAATAC-CA-ATTCCCAGAAAT--TTGTGTT--TTA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATTTATATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACAAGAAACTTTTCTTCA-AA-CCTC-AAT------ATCTTTCA-TT-------CAAG---ATC----ATTTTGCTT----GATCGAAACATGTTTA-A-A-C------AT-------C---AACGATTAC----ATACA----AATTA-AGTT-------TATGTACAAGAAATCAGTTGCATGTGAATTATGAATGATTAATT-TGCCAAA-T-TATTAATTCTTT--GTGTTCTA-TT-TT--CTC-----AACATTTAGCCAG---CAGATGCAAGTTTCCTATCCTTCTAT--ACA-A-GCCCTTG---AT----TTT--ACATATGGTGACTCAATGAT-TGCGTCAA---ATTA-ACTCAAAATGAAT--GCATTTCAATGACagtccaaaacttaaaaaatcttcttctcttgaacggccc
gi|30 : aaatgcattga--TATCTTA-T-TA--TTT--TGCACAAAGA-----------CTTATATGGAG-------A-----AG-G--A-A-ATGCAACTC-GTTT--ACGT-TTGAAATATAA---C--TAGCG--TACT---CATGCGTAAAAATtgaatttaagcatcagatttgtagataaaacactgcacagtat
gi|32 : tta---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTG---
gi|32 : tagaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTggtagagagagatgcaagtttcctatccttattagtcctt
gi|34 : tagagagagatgcaagtttcctatccttattagtccttgggtagaga---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---GT----
gi|34 : ga---GAGGTGCAAGTTTCCTATCCTTCTagagagaggtgcaagtttcctatccttct
gi|35 : gagaggtgcaagtttcctatccttctatataagtccttggtagagaAAGTACTTTTG-ATTA-CAAAATGTGTATACTG-CAACTAAAA-AAT-CAA-
gi|36 : CAGA--GAGATGCAAGTTTCCTAgtgaagtacttgtgatt
gi|36 : aACATTTAGTAGA---GAGATGCAAGTT-----TCCTTCTAT--ATA-A-GTCcatttagtagagagatgcaagtttccttctatataagtc
gi|37 : acagagagatgcaagtttcct---GAGAAGCAAATTTCCTATCCTTCTAT--ATA-A-GTCCTTG---
gi|4 : gaTTCACCGGAA--CCTATTATTATG-T-TCA-TTT------CAAGGA-----------ATTACATAGAG-------A-----AG-G--A-AAG-GCAATTG-ATTG--ATAT-TT----TGTGAACGT--TCGCG--TATT---CATGC---AAAATT--TCACAATATCTCGTTTTC--A-T-----TATC-TTAATTTCCATTCATCTC-------AGT-A--ACACA----------A-ATCAAA--GT-TC--TTACATTGCAGAATGAA--CT-TC-T-C-A-TAAAAA-------------------AAT----GTGTT--TAA-TAG--TGTTGAAGTACCTCTG-ATTA-CAAAGTTTGTATACTG-CAACTAAAA-TAA-CAA-C-A-AT-TT-ACAAGAACTTTTACTTCA-A-------------------------------------G---ATA----ATTTTTCGT----GATCATAACA-ATTTA-TTA-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGTAATCAGTTGCCTTTACACTATGAATGGTTAATT-TTCCAAA-T-AACTAATCCTTC---TGTGCTA-TT-TC--ATC-----AACATTAAGTCAG---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---GT----TCT--gatatgcaagaacaataagt
gi|40 : taacacgtagttaagtcacacgtgtacacaaataatgtacatactcgctgaaataaaatgatat--TAT-CAAGGA-----------ATTATATAGGG-------A-----AG-G--A-A-ATGCAAATG-tttgaagtgtattttggatatacatcataaaacgagtaataaaagattcattgttaaaaattccaggtcattcc
gi|41 : aaaca--TAC-CAAGGA-----------ATTATATGGAG-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ttgtacactcgcg
gi|42 : --TAC-CAAGGA-----------ATTATATAGAA-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ta
gi|43 : AGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTA--ACAa
gi|44 : ---GAGATGGAAGTTTCCTATCCTTCTAT--ATATATGTCCTTG---
gi|46 : aGAAGCAAGTTTCCTATCATTCTAT--ATA-C-ATCCTTG---
gi|47 : gagtTTGGTAGA---GAGTTGCAAGTTTTCTATCCTTCTAT--
gi|48 : agtcc-CAAGGA-----------CTTATATAGAG-------A-----AGAA--A-A-A-GCAACTG-TTT
gi|5 : gagTCATTTAT----TTGAGTTCATCGACA--CTG--TTTTATA-TATAA-A-----AA-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AAAG-TT----TGTGAACGC--TTGCG--TATC---CACGT---AAAATC--TTGTAATATCTCATTTTT--AAT-----TATC-TTCGCCTCCATTTATCCC-------AGG-A--ACACA----------A-ATTACAT-AT-T---TTACACTGCAAAATGAA--AT-TG-C-A-A-TCAAAACAATAC-C--ATACCC-GAAAT--GTGTGTT--TAT-AAT--TGCTGAAGTCCTTGTG-ATTA-C-ATATGTGTATACTG-CAGCTAATA-TAA-CGA-C-A-AA-TT-AC--GAAATTTT----------CCTC------------------------------------------ATTTTGCGT----GATCGAAACATGTTAA-A-A-C------AT-------C---TAGGATTAC----ATACA----ACTTACAGTC-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTTATT-CA-CAAA-T-TACGAATCTTTT--GTGTGCTG-TT-TT--ATC-----AACATATAGTCAG---GAGATGCAAGTTTCCTATCCTT
gi|6 : gatactgttgatcatccggctttggattaaattttagatttttaac-TGA-CTT--TATTCTAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATACAACTG-ATTG--AGAT-TT----TCTGAATGC--TTGCA--CATT---CATGC---AAAATC--TCGCAGTATCTCATTTTC--AAT-----TAAC-TTAACCTCCATTCATC------------------------------------AAA--AT-TC--TTGCTTTGCAGAATGAA--AT-TC-T-C-A-ACGAACCAATAC-CA--TTCCCAGCAAT--TTGAGTT--AAA-AAT--TGTTAAAGTACTCCTA-ATTA-CAAAATTTGTATACTG-CAGGCAAGA-TAA-CAA-TGA-AA-TT-GTGAGTAAATTTACTTCC-AA-CCTC-AAT------ATCTTTAT-TT-------CAAG---ATC----ATTTTATTT----GATCAAAGCATATTAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ATTTACAGGT-------TATGTACAAGAAA-CAGTTGCCTGTGAATTCTGAATCATTAATA-TGCCAAA-T-AACTAATCCTTT--GTGTGCTA-TT-TA--ATC-----AACATAAAGTCAG---AAGATGCAAATTTCCTATCCCTCTAT--ATA-A-GTCCTTgataaaaataaacaaatattaaaataaagttatgttatataaatcaatttatattttattactacgaataac
gi|7 : aaaatttaatctcttaaattgtattttgaaaaaaaccGTTTTT--AAT-----TATC-TTCACTTCCATTCATCTC-------AGG-A--ACACA----------A-AACAAA--AT-TC--TTACACTGCAGAATAAA--AT-TG-T-C-A-TCAAAACAATAC-CA---TTGCGGGAAT--TTGTGTT--TAA-AAT--ATTTTAAGTACTTCTG-ATTA-CAAATTGTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-GT-TT-ACAATAATTTTT-TTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---AGC----ATTTTGTGT----AATTGAAACATGTTTT-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACAGTT-------TATGTACAAGAAATCAGTTGCCTATGAATTATGAATGATTAATT-TG-TAAT-T-TATGAAGCTTTC--GTGGGCTG-TT-TC--ATC-----AACATTTAGTTAG---GGGATGCAAGTTTCCTATCCT--TAT--ACA-A-GTCCTTG---GT----TAT--ACcctataatataatgttttatttctattatataaaatagtttctacttttaataaagcacatacaagcttgaatttaaaat
gi|8 : tC-TAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AGGT-TT----CGTAAACGC--TCGCG--TATT---CACAC---AAAATC--T-----TAT-----------AAT------ATC-TTAACTTCAATTCATCTC-------AGG-A--ACTCA----------A-ATCAAA--CT-TC--TAACATTGCAGAATGAA--AT-TC-T---A-TCAAAACAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTAAAGTACTTCTG-ATTA-CAAAATGGGTGGACT--TAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATATTTAA-TT-------CAAG---ACC----ATTTTA----------------------A-A-A-C------AT-------T---TAAAATTGC----ATACAACTGACTTACATTT-------TATATACAAGAAATCAGTAGCTTGTGAACTATGAAAGATTAATT-TGCCAAA-T-AATCAATTCTTCGTGTGTGTTA-TT-TT--ATC-----AACATTTAGTCAT---GAAATGCAAGCTTCCTATCCTTCTAT--ATA-A-GTCCtcatgtgcagattcatgtcctatataagatcatttatcttcgtccatcacgaaaactgattgccatatataaccttttgggtgcgttgataatggtgttaaaccaagtagaaaaaaaaaaattatgaaagaactgtgaagcaaagtgccaaaatgtggtcatgtggaaatgatatgattgtga
gi|9 : tgattagtttacatttgcataatcaagacacttgtatgaataattcatgtatttataacaaaacaaacatttgacattcgaatgaactgagcccgtgtggttccggAAGTTGCCTTTCCTTCTCTCTATA-A-GTCCTTG---CT----ATC--GCTTAGTGTCAATAAATGAT-TTC--CAGTTTATTA-A-ATATAAT-ATT--A--TTATATT
gi|9 : atttgcacgaaataaaatat--TAG-CAAGGA-----------CTTATAGAGAG-------A-----AG-G--A-AAG-GCAACTT-ATTT--AGAT-GG----TATGAATGC--TCGCA--TATT---CATGC---AAAATC---------A---CGTTTTC--AAA-----TATC-AGGACTGCCATACATCTC-------ATA-A--ATACA----------A-ATTAAA--AT-GT--TTTCTTTGCACAATGGA--GC-TCCT-T-A--CAAAATGAGAC-CA--TTCCCATCAAA--TTGTGTG--TAA-AAT--TGTTGAAGTACTTATG-ATTA-CAAAATTTGTATACTG-CAACTAAAA-TAT-TAA-GGA-AA-GT-ACTTAAAATTATACTTCA-AA-CTGC-AAT------ATTTTAAA-TT-------CAAG---ATC----ATTTTGCGT----GTTTAAAACATACA-A-A-A-C------AT-------C---TAGGGTTAC----ACAGA----TCCTACATTT-------TATGAAAAAGAAATCAGTTGCCTGTGAA------------AATT-AG--AAACT-TATTAATTCTTA--GTATGCTA-TT-TT--ATA-----AACATTTAGTAGA---GAGATGCAAGTTTCCAATCCTTCGAT--ATA-A-GTCCTTatttagatggtatgaatgctcgcatattcatgcaaaatcacgttttcaaatatcaggactgccatacatctcataaatacaaattaaaatgttttctttgcacaatggagctccttacaaaatgagaccattcccatcaaattgtgtgtaaaattgttgaagtacttatgattacaaaatttgtatactgcaactaaaatattaaggaaagtacttaaaattatacttcaaactgcaatattttaaattcaagatcattttgcgtgtttaaaacatacaaaacatctagggttacacagatcctacattttatgaaaaagaaatcagttgcctgtgaaaattagaaacttattaattcttagtatgctattttataaacatttagtagagagatgcaagtttccaatccttcgatataagtcctt
blockSeqs : . A TTCCA A A A . AT CA CAGAGAGTCGT TTATACT CAAAT A GA C AC T GT . GAAA AT GCG ATT GTA AATCGA TA AATAT C A ATAGTAA G TT GTGGGGAGGG T TT G TA AC A C CT C G A ATA GC AA T TG A C T G A A T GG G G . TT A C T TG A CAAGGA T G ATTGCTGC TGC TTTAA GCATTGCAG TA TG T T G T GCCAGT AATAAAA ACA CATG ACTG G AACTTTT T A T C AT GT T C TC ATTTT AGA CT T T TTT TGAGTTT T TATTTG G A CAGTTT T TG G G CAG
blockSeqs : CCTAT A . . . . TT . . . . A . AG . GT . . . A . . TAGT . . . A . . T . . T . TA . . . CC . A . AA . . . . C . . T . . . GA C . . GA A . . CT . . C . T . C ATATA CG TT T . T . . . . . . T . A . C . A . . . . . A . . . . TTTTA T GACTCA G . GTCAA . CT A . GCA
blockSeqs : CTG A . . . . T . . . . A . GA . . . . . A . . ACGC . . . A . . . . . . . . . . . A . A . AA . . . . C . . T . . . TG . . . GA A . . CG . . A . A . A ACAAG CG TG C . T . . . . . . T . A . C . A . . . . . . . . . . TTA C CAATAA G . ACAA . A T . A
blockSeqs : T . . . . T . . . . . . AG . . . . . G . . TCGC . . . A . . . . . . . . . . . A . A . AA . . . . A . . T . . . GG . . . TT A . . CG . . C . C . T TCGTG CA TA T . . . . . . . . G . C . C . A . . . . . . . . . . TTT C TTTCA . . TCAG .
blockSeqs : . . . . A . . . . . . AG . . . . . G . . TCGC . . . A . . . . . . . . . . . T . A . A . . . . G . . G . . . C . . . GA C . . CT . . T . C . C ACTTG CG TG T . . . . . . . . T . A . C . T . . . . . . . . . . TCT G
blockSeqs : . . . . C . . . . . . AG . . . . . T . . TCGT . . . A . . . . . . . . . . . C . G . A . . . . G . . A . . . C . . . TT A . . TG . . T . C . C TCAAT TG TA A . . . . . . . . G . G . C . T . . . . . . . . . . TTA T
blockSeqs : . . . . C . . . . . . AT . . . . . G . . TTGC . . . A . . . . . . . . . . . C . A . A . . . . T . . T . . . C . . . TT C . . CT . . T . C . C GCGTG CA TA T . . . . . . . . T . A . C . T . . . . . . . . . . TAT
blockSeqs : . . . T . . . . . . AG . . . . . A . . TCAG . . . A . . . . . . . . . . . C . G . A . . . . A . . G . . . T . . . GA A . . TG . . C . C . C GATTG CT TA T . . . . . . . . T . A . C . A . . . . . . . . . . ATC
blockSeqs : . C . . . . . . AT . . . . . G . . TTGT . . . G . . . . . . . . . . . C . A . A . . . . A . . T . . . C . . . TT A . . TG . . T . C . C GCTTG CG CT T . . . . . . . . T . C . T . A . . . . . . . . . . .
blockSeqs : . C . . . . . . AG . . . . . G . . TCGC . . . A . . . . . . . . . . . A . A . A . . . . C . . T . . . C . . . AA A . . CT . . C . C . C TCGTG TG TG T . . . . . . . . T . C . T . A . . . . . . . . . .
blockSeqs : . A . . . . . . AT . . . . . G . . TCAC . . . A . . . . . . . . . . . C . A . A . . . . T . . G . . . C . . . AA A . . CT . . C . T . A GCGTG CG TG A . . . . . . . . T . C . C . T . . . . . . . . . .
blockSeqs : . C . . . . . . AG . . . . . G . . TTGT . . . A . . . . . . . . . . . C . G . A . . . . T . . T . . . C . . . GA T . . CT . . C . T . C ATTTG CA TA A . . . . . . . . T . T . C . A . . . . . . . . . .
blockSeqs : . G . . . . . . AG . . . . . G . . TCGC . . . C . . . . . . . . . . . C . A . A . . . . T . . G . . . C . . . AA A . . CT . . A . C . C GTGTA CG TG C . . . . . . . . G . C . C . T . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . A . . T . . . A . . . . . . . . . . . A . A . A . . . . T . . T . . . C . . . GA A . . CT . . T . C . C GCGTG CA TA A . . . . . . . . T . A . C . A . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . G . . . . . . C . . . . . . . . . . . C . A . A . . . . C . . G . . . . . . . TT A . . TG . . . . C . C GTAT TG T T . . . . . . . . G . A . . . T . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . A . . . . . . A . . . . . . . . . . . C . A . A . . . . G . . G . . . . . . . . A . . T . . . . C . . CATC TA T T . . . . . . . . G . A . . . A . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . G . . . . . . . . . . . T . A . A . . . . C . . T . . . . . . . . . . . . . . . . C . . GA A A A . . . . . . . . G . C . . . T . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . G . A . . . . C . . . . . . . . . . . . . . . . . . . . . . G . . A . . . . . . . . T . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . C . . . . . . . . . . . A . . T . . . . . . . . T . A . . . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : TTN****** NANTCG CAA*****
originalCons : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---AT----TTT--ACATATCGTNACTCGACGAC-TTCGTCAG---ATTA-ACGCAAAAT-ACT--G--TTTTATTGAC
finalCons : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---ATTTN------ACATATCGTNANTCGACGAC-TTCCAA-----ATTA-ACGCAAAAT-ACT--G--TTTTATTGAC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TAAGCCCATTTGAAGAGTGTAACGTAATTACATGTTATATTTGACGCCCAGCTTTATTGCAGGAGAAATAACTGCGGATAAACCTTAGTATAACCACCTTGCACTTGCAA
Unaligned ( gi|31 ): ATTTATTTTCAAAATAGCATTTGATCTTCTATTATTTCTATTTGGCCTCAAGCACTCAGTCATGGGTTTTTTTATTGATCAAGG
Unaligned ( gi|33 ): GCAATATTCTAAATACAAGACAATTTTGCAAGTTTAAAATTTTATAAAACAACTAATATTACATACACCTT
Unaligned ( gi|38 ): GTTTGTTATCAAATTCCTTCAATGAACCTATATACATGTATTTACTTATTTTTT
Unaligned ( gi|39 ): GGCTCACTGGCTTTCTTTTTAATGATATGCATTTGTCAATTGCGAGTAGTTCA
Unaligned ( gi|45 ): ATCAAATCAAAATAGCATTCTTTTTTTTTATAGTCAATT
Unaligned ( gi|49 ): TACATTTATATTTGACATCCAGTTTTATTGCAGGA
Alignments
lowQualScore : 2222 1 1111111 222 222 111 111111111 11111111 1111 222222222 11 1 22222
lowQualScore : 4444 5 5555555 6 5 4 4 33 55 88888888888 5555555 44444 1 55 1 000 1 55 1 4444 22 0 444 333 333 999999 22 44444 1 1 6666666 1 44 8888888888 1 44 1 55 22 1 1 666 1 4 1 1 222 22 22 2 22 1 1 1 2 2 2 2 111 4 2 2 88 1 2 2 33 2 555555 6 1 66666666 333 66666 444444444 11 77 2 1 5 1 555555 5555555 333 3333 3333 1 6666666 2 1 5 1 66 22 1 1 22 44444 0 333 0 11 1 1 666666 00000000 2 00 1111 11111 2 8 444444444 8 00 1 0 0 11111
lowQualScore : .... . ....... . . . . .. .. ........... ....... ..... . .. . ... . .. . .... .. . ... ... ... ...... .. ..... . . ....... . .. .......... . .. . .. .. . . ... . . . . ... .. .. . .. . . . . . . . ... . . . .. . . . .. . ...... . . ........ ... ..... ......... .. .. . . . . ...... ....... ... .... .... . ....... . . . . .. .. . . .. ..... . ... . .. . . ...... ........ . .. .... ..... . . ......... . .. . . . .....
lowQualScore : 0000 5 2222222 0 0 4 4 99 66 66666666666 7777777 33333 7 66 7 444 7 00 8 2222 88 6 222 333 333 111111 66 88888 9 7 2222222 9 55 3333333333 9 55 9 22 66 9 9 000 9 2 0 9 333 66 88 0 88 0 9 9 5 1 0 0 777 2 1 1 77 3 1 1 22 0 888888 0 9 00000000 222 77777 000000000 22 00 8 8 5 8 222222 9999999 222 9999 9999 3 2222222 2 9 4 9 11 88 9 9 66 88888 1 555 2 88 4 4 777777 77777777 6 55 3333 33333 5 0 444444444 0 88 2 0 2 55555
consensus : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---A--T----T---TNACATATCG--TTANTCGACGAC-TTC--CAG---ATTA-ACGCAAAAT-ACT--G--TTTTATTGAC
Reference ( family-1489 ) : NNNNNNNNNNNTCATTTATCAATTTGAGTTCATCGAAA--CCG--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACGC--TCGCG--TATT---CACGC---AAAATC--TCGCAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-T-C-A-TCAAAACGATAC-CA-ATTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTNTG-ATTA-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---ATC----ATTTTGCGT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTAATT-TGCCAAA-T-NATTAATCCTTC--GTGTGCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---A--T----T---TNACATATCG--TNANTCGACGAC-TTC--CAA---ATTA-ACGCAAAAT-ACT--G--TTTTATTGAC
gi|1 : ATG-T-TAAATCT--TAT-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATGCAACTG-ATTG--A-ATGTT----TGTGAACGC--TCGCG--TATT---CACGT---AAAATC--TTGCAATATCTCGTTTTC--AAT-----TATC-CTAAATTCCATTCACCTC-------AGG-A--ACAAA----------A-ATCAAA--AT-TC--TTTCATTGCAGAATGAA--AC-TC-T-C-A-TCAAAATAATAC-C--ATTCCCAACAAT--TTGCGTT--TAA-AAT--TGTTGAAGTGAATCTG-AATA-CAAAATTTGTATACCG-CAGCTAAAA-TAA-CGA-C-A-AA-TGAACGAGAACTTTTCCTTCA-AA-TCTC-AAA------ATCTTTAA-TT-------CAAG---ATC----GTTTTGCAT----GATCGAAACATGTTTA-T-A-C------AT-------C---AAAGATTGA----ATACA----ACTTACAGTT-------TATGT-TAAGAAATCAACTGCCTGTGAGTTATGAATGAGTAATT-TGCCAAA-T-AATGAATCCTTC--GTGTGCTG-TT-TC--ATC-----AACATTTAGTCAG---AAGAGACAAGTTTCCTATCCTTCTAT--GCA-A-GTCCTTG---A--T-----------CATATTG--
gi|10 : catttatggaacatgaatgacaaaatcgtagatattaagtttaatgacgaagttatgtcacaa-CATGGA-----------CTTATATAGAG-------A-----AG-G--A-A-ACGCAACTG-ATAG--CGGT-GG----TATGAACGC--TCGCGCGTATT---CACGA---AAAAAAAATCGAGACATTTCGTCTCC--AAA-----TGTCCTTAACTTCAATTCATCTC-------AGG-A--ACAAA----------ATATCAAA--AT-TC--TTCCTTTGCACAACAAAACAT-TC-T---A--CAAACCGAGGC-C--ATTCACAGCAAC--TTGTGTT--TAA-AAT--TGTTTAAGTACTTATG-AATA-TAAAATGTGTATACTG-CCACCGTAA-TCATCAAGG-A-AA-GA-ACTTGAAA-TTTACTTCA-AA-CTGC-AATCAAGGAAT-TCGAA-TTATTGCTGCAAT---ATTTTAAATTTCATAT----AATTAAAGCGTGTATA-A-A-C------ATAATAAAACACATAAGGTTAC----ATAAA----CCTTAACGTT-------CATGTTTATGAA--CACTTGCCTGTAAAATTTGAATGATTAATTATATTATA-T-AATTAagcatgcatgaatacttactatataacgaagaaatcaacaatatcctaatattattaaaatgttgagtttaaaattatttatatcataatgtgaatctgtgtgcagcaatagacaaaagtaaatgc
gi|11 : aataatatgtcgtttacaacaattgccgtttgtcttccctatctgattctcttggttaggaG-G--A-A-A-GCAACCG-A-------AT--------GTGAGTGC--TTGCA--TATTATTTACGG---AAAATC--TAGTAATAACTGGTTTTC--CAT-----GATG-TTAACTTCC-TTCATCTC-------AGG-A--ACACA----------A-ATCAGA--AT-TC--TTACATTGCAAAATGAA--AT-TC-T-A-A-TCAAATCAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTGAAGTACTTCTG-ATTTTCAAAATTTGTATACAG-TAGCTAAAA-TAA-CAA---A-AA-TT-GAGAAAAATTT-ACTTCA-AA-CCTC-AAT------ATTTTTAT-TT-------TAAG---ATC----ATTTTACAA----GATCGAAACAT-TTTA-A-ATC------AT-------C---TAAGATTAC----ATACA---------C-----------------CAAGAAATCAGA-------AAATTATGAATGACTA-TT-TACCAAA-T-AATTAATCCTTT--GTGAGCTA-TT-TT--ATC-----AACAATTAGTAAG---AAGATACAAG--TCCTATCCTTCTAT--ATA-A-GTCCTGGTTTATTT----T---TAACATATTT--TTATTTGACGAC-TTCA-CAA---GTTC-ATGCAAAGT-ACT--G--TTTTATTGACtatagaca
gi|12 : gtggagggacagccTT---TACAC---AAAATC--ACGCAATGTCTC-------------------C-TT---TTCCATCCATCTC-------AGG-A--CAATA----------A-ATACAA--AT-TC--TTACATTGCAGAATGAA--AT-TC-C-A-A-TCAAAGCAATAC-CATAT--CCAGCAAT--TTGTGTT--TAG-CAT--TAATGAAATAATTCTG-ATTT-CAAAATTTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCACAATCCGC-AAT------ATCTTTCA-TT-------AAAG---ATA----ATTTTTCGT----GATCGAAACATTTTCA-A-T-C------AT-------C---TAAGAATAC----ATACA----ACTTGCATTT-------TATGTACAAGAAATCTGCTGCTTGTAAATTATGAATGATT-ATT-TACCAAA-T-AATTAATCCTTC--GCATGCTG-TT-TT--ATC-----AACATTTA--------GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---A--T----T---TAACA-ATCG--GTAG--GATTAC-TT----AT---ATTA-A
gi|13 : TATAAT-TAA-TTTATTAT-CAAGAACAGAGAGTCGTATCATATACACTTATACTA-----AG-G--ACA-G-GCAACTG-ATTG--AGGT---------------------CA--TATT---CACGC---TAAAT-------AAT-----GTTTTC--AAT-----GATC-TTAACTT---TT--TCT-----------------------------------------------TTGCATT-TATAACGAA--AT-TC-T-T-T-ACAAAACAAAAC-CA--TTCATAGTAAA--TTGTGTT--TAC-AAT--TGTTGAAGTACTCATG-ATTG-CATAATTTGTATACTGACACTTAAAA--AA-CAAGA-A-AA-GT-ACTTGAAATCTCACTTCA-AA-CCGC-AAT------GTAAGAAG-TT-------CAAT---ATT----ATTTTG---------------TATGTTTA-AGA-C------AT-------C---TAAGGTAAC----ATACA----GCTGACATTT-------TAAGCATAAGAATTCAGTTTCATGTGGAATCTGAATGATTAAAA-TACTAAT-T-TATTAGTTCTTC--CTGCACTA-TT-TT--ATC-----AACATTaactgttgacgtcccataaaacgggcaatgcatgtcatatttacgat
gi|14 : gtatccaccttgtctacagatttattttttgtca-CAAGGA-----------ATTATATAGAG-------A-----AG-A--A-AAG-GCAACTG-ATTG--AGAT-TA----TGTGAACGC--TCGCG--TATT---CAAGC---AAAATC--TCGCAATATCTCATTAAT--AAT-----GTTC-TTAACTTCCATTCATCTC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAGAATGAA--AT-TG-T-C-A-TCAAAACAATGC-C--ATTCCCAGAAAT--GTGTGGTAACAATAAT--TGTTGAAGTACTTGTG-ATTA-CAAAATGTGTATTCTG-CAGCTAA--------------------------AAATTTCCCTTCA-AA-CCTT-AAT------ATCTTTAA-TT-------CAA-----------------------------AAACA--TTTA-A-A-------------------------ATTAC----ACACA----ACTTACAGTT-------TATGTATAAGAAATCAGTTGCCTGCGAGTTATAAATGATCGATT-TG-CAAA-T-TATGAATTTTTC--GTGTGCTG-TT-TC--ATC-----AACATTTAGTCAC---GAGATGCAAgacgtgtcatgtatat
gi|15 : ttttgaacaggcatagaatttcctgcttttttttcattagcagttaaaagacaA-T-TAA-TTA--TAT-TATATA-----------ATTATATAGA---------------------------CA-C---ATTG--AGAT-GT----TATGAACAC--AGGGG--TATT---CATGC---ATTATG--TCGCCAAATCTCGTTTTC--AAT-----TATC-CTAACTACCATTCATTTT-------GGA-G--GTACA----------A-ATCAAATTATGTC--T----TCGCATAATGAA--ATATC-G-CTA-T-AAAATGACAC-C--ATTCCCAGCGAA--TTGTGTT--TAA-ACT--TGTTGAAGTACTTGTG-A--A-TAAAG---G-------------AAAA-T-A-C----------TT-----GAAACTTTACTTCA-AA-CTGCAAAT------AT-TTTAA-TT-------CAAGTGCAT-----ATTTTGTAT------TCAAAACATAAAAA-A-A-C------AT-------C---TAAGGTTAT----ATAAT----GCTTACATTT-------TGTGTATAAGAAATATATTGCC----AGCTGTGA------AATT-TG------------------TC--GCATGCTA-CT-TT--ATC-----AATA-TTAGAAGA---GAGATGCAAGTTTCCTATCCTTCTAT--ATA-A-AT
gi|16 : aatttgaatgATC--TCGTAACATCTCGTTTTC--AAT-----TATC-TT-----CCATTCGTCTG-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACACTGCAAAATGAA--AT-TC-T-C-A-TAAAAACAATAC-CA--TTCACAGAAAT--GTGTGTT--TAA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATAT-TATACTG-CGGCTAAAA-TAA-CGA-C-A-AA-TA-ACGATAAATTTTCCTTCA-AA-TCTC-AAT------ATTTTTAA-CT-------CAAG---ATC----ATTTTACTT----GATCGAAACATGTTTA-A-A-C------AT-------C---TAAGAGTAC----ATACA----ACTTACAGTT-------TTTGTACAAAAAACCAGATGCATGTGAAGTATGAATGATTAATT-TGCCAAA-C-TCTTAATCCTTC--GTGTGCTG-TC-TT--ATCATTTTAACATTTAGTCAG---GAGATGCAAGTTTCCTGTCCTTTTTT--ACA-A-GTTCTTtat
gi|17 : -CAAGAA-----------CTTGTATAGAG-------A-----AA-G--G-A-GAGCAACTG-ATTG--CGAT-TT----TGTA-----------------T---CACTC---AAAATC---------ATCTTGTTTTTTAAAT-----TA
gi|17 : agATT-TCATCTTCCATTCTTCTT-------AGG-T--ATGCA----------T-ACCAAA--AC-TG--TGACATTACAGAAGGAA--AT-T--T-C-ACTCATAATGGGAT-CA--CCCCCAGTAATGCTTGTATG--TGA---T--TGTTGAAGTTCT-ATGCATTA-CAAAAATTGTACACTA-CCACTAAAAACAA-GAA-C-AGAA-CT-TCTTGAATTTTGACTTTA-AA-T-TA-AAT------GTTTTTAA-TT-------CAAT---ACC----ATTTTG-------AA--AAAACA---TTATA-A-C------A-------------AATATCAT----ATACA----catgtattcttatttacatgttttttcattttatttacatggatttcatcttccattcttcttaggtatgcataccaaaactgtgacattacagaaggaaatttcactcataatgggatcacccccagtaatgcttgtatgtgattgttgaagttctatgcattacaaaaattgtacactaccactaaaaacaagaacagaacttcttgaattttgactttaaattaaatgtttttaattcaataccattttgaaaaaacattataacaaatatcatatacactaagccatataaatacacaacattattag
gi|18 : agcaagaacttgtatagagaaaggagagcaactgattgcgattttgtatcactcaaaatcatcttgttttttaaattacatgtattcttatttacatgttttttcattttatttacatggG-------A-----AG-A--A-A-G-GCTACCG-ATTG--ATAT-TT----TGTGAACGC--TCAC------------------------------AATATCTTGTTTTC--AATAATATTATC-TTAACTTCCATTCATCTC-------AGG-A--ACACC----------A-ATCAAA--AT-TC--TTGCATTGCAGAATGAA--AT-TT-T-C-A-TCAAAACAATATACA-A---CTAACATT--TTATGTctaagccatataaatacacaacattattag
gi|18 : cagtgataaatacattggcaataccaatT-------CAAA---AT------TCTTGCATTGCAGAATGAAAT---TTT------C------AT-------C----AAAACAAT----ATACA----ACTAACATTT-------TATGTACAAGAAATCAGTTGCCTGCAAATTATGAATGATTA-TT-TACCAAA-T-AATTAATCCTTC--ATGTGTTA-TT-TA--ATC-----AACTTTTAGTCAG---TAGATGCAAGTTTCTTATCCATCTAT--ATA-A-GTCCTTG---G--T----acaagaaatcagttgcctgcaaattatgaatgattatttaccaaataattaatccttcatgtgttatttaatcaacttttagtcagtagatgcaagtttcttatccatctatataagtccttggtgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|19 : cagtgataaatacattggcaataccaatgaagaaaggctaccgattgatattttgtgaacgctcacaatatcttgttttcaataatattatcttaacttccattcatctcaggaacaccaa-TAG-TAA-T-A-AAGCT-ACTTGAAATTTTACGTTA-AA-ATGT-AAT------ATTTTTAA-TT-------CAAG---ATC----ATTGTTCAA----TATCAAAACAT-TCTA-ATA-C------AT-------C---TAACGTTACCATGATACA----ATTTACATTTAACTTTTTATGTACAAGAAAGCCATTGTCTGTGAATTCTGAATGATTACTT-TGCCAAA-T-AACGAATCCTTT--GTGTGTGA-TT-TTTCATC-----AACATTTAGT------------CAAGTTTCCTAACCTTCTAT--GTA-A-AGCATTA---A--T----TGTGTGAC-TAT-GAATCAGTCGACGgaaaactattatgctgttactaaataaaactacataaatgaagtat
gi|2 : ttataagtccttgatac-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GTAACTA-ATTG--AGAT-TT-----GTGAACAC--TTTTT--CATT---TACGC---AAAATC--TTGCAATAT-------------------TATC-TT-----TCATTTATCTA-------GGGGA--ACCCA----------A-ATCAAA--AT-TC--TTACATTGCAGAATAAA--AT-TT-T-A-A-CCAAAACAAGAC-TA--TTCCCAGCTGT--TTGT-TT--TAT-GAT--TGTTGAAATACTTATA-ATTA-CAAAATGTGTTTACTG-CAAATAAAA-TAA-CAG-----AA-TT-GCGAGAAATTTTACT--A-AA-C-------------------AA-TT---------------------ACT-----------ATCTAAACATATCAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACGTTT-------TATGTACCA-AAAGCAGTTGCCTTTGAATTCTGAATGATTAATT-TACCGAA-T-AATTAATCCTTT--GTGCCCTA-TT-TT--ATC-----AACATTTAGTCAG---GAGATACAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---A--TTGAGT---TTA-ACATCA--TT-TTCAAC-ACATTT--CAG---GTTATATGTGGCAT-ACTCAG--TTTTATTGctgtgaaacagttcaccaggatgatttcaacatcttttaagaagaatccaaatcatata
gi|20 : tagtcagccactatagagagatcttcagatctctcctgtatttttttttgatggggt-CAAGGA-----------ATTATATAGAG-------A-----AA-G--A-AAG-GCATCTG-ATTG--ATAA-TT----TGTGACCGC--TCGCG--TATT---CATGC---AAAATC--TCAGAATATCTCGTTTTC--AAT-----TATC-TTAACTTCCGTTCATCAC-------AGG-A--ACACA----------A-ATCAAA--AT-TC--TTACATTGTAGAATGAA--AT-TC-T-C-T-TCAAAACAATAC-C--ATTTCCATCAAT--TTGTGTT--TAG-AAT--TGTTGAAGTACTTCTG-ATTT-CATAATctggaggataacttcagaataaatctgagtagaaccaccgtccttccactagcaacttaaagattttggagcgaacaggacctaatgattgtttattttaatata
gi|21 : agggtgagatttttatattccacaggatgaacttatgTCAAAA--CAG--T----TG-T-TGT-TTC--AAA-CAAGGA-----------ATTTTATAGAG-------A-----AG-GGAA-A-A-GCACCTT-GTTG--AGAT-TA----TGTGAAAGCATTTGCA--TA-----CATGC---AAATTC--TTGTTGAATTTTGTTTCC--AAT-----TATC-TGGGCTTCCAGTCATCTCATAGTAAAGG-AT-AGGGAGTGGGGAGGGA-AT-AAA--AT-TTTATTGCATTGCAGAATGAA--AT-TC-TCC-A-T-GAAATGAGA--TA-ATTCCCAGCAAC--TTGTATT--CAA-AAT--TGTcgcctcatacattgttttaataatagccttaaaatatatttttt
gi|22 : ttcttatatacttatcaagacataaactaaattaaacattgtcaggt-AAT------ATCTTTAA-TT-------TAAG---ATC----ATTGTGCGT----GATCGAATCATATTAA-A-A-C------AT-------T---TAAGGTTAC----ATCCA----A-TTACATTT-------TATGTACAAGAAAGCAGTTGTCTGTGAATTCTGAAAGGTTAATT-TGTCAAA-T--ATTAATCATTC--GTGTGCTATTT-TT--TTC-----AACATTTAGTCAG---GATATGCAAGTTTCCTATCCTTCTAT--GTA-A-GTGCTCG---G--T----T---caa
gi|23 : aaataaaattaatataaaatTTCG-ATTA-CAAAAATTCTATTTGG-TCGCTGAAA---A-CAA-C-ACAA-TT-ATTTGAAATTTTACTTCA-AA-CTGA-AAT------ATTTTTAA-TT--------AGG---G------ACTTT-CAT----CAT--AAA-ATATTCA--------------------------AAGATAAC----ATA----------ATATTT-------TATGTATAATAAATCAATTGTCTGTGAATTTTGAATAATTAAT-------------ATT-------------------TC-TT--AT-------GCATTTGGTC------AGATGCAAGTTTCCAATTCTTCTAT--ATA-gcaaactgtgccaagtcgagatatatttgaaaaaaat
gi|24 : -CAAAGA-----------ATTATGTTGAA-------ACAAATAT-A--A-A-A-TCAA-TGTATTG--AGAA-TT----TGTGAAAGA--ATATG--TATT---TAC-C----AAAT-----------TTTCATTTTG--AAT-----CATC-TTAGCTTCCAGTCATCGC-------AGG-ATTATACA----------A-AT--AA--AT-TTTATTACTTTG------------------------CAAAAC---------ATTCCCAACAAT--TTTTGTT--CAA-AATTGTGTTTAAATTCTATTG-ATTA-
gi|25 : aaatggtttTTTAGGTT-------TAAG---ATC----AGATTGATT----GATTGAAACACTATAA-A-A-CGCCAGTAT-------T---TTAGGTTAC----ATACA----ATTTACATTT-------CATGTACAAGAAAGCAGATGCCTGGGAATTCTTAATAGTTAACT-TGTAAAA-TATAATAAT-ATTC--CCATGCTA-TT-TG--ATC-----AACATTAAGTCAG---GAGA
gi|26 : tGATGCAAATTTCCTATCCTTCTAT--ATA-A-AT
gi|27 : ---GAGATGCAAGTTTCCTATCCT----T--ATA-A-GTCCTTG---ttaactgccgaatggtgtttcaatccaaatgtttatataactgcagtttgtttcctgatttaatgattaaagcgattatataacaattatatcgatttatataataaaaggtaaactatgtac
gi|27 : agaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTcgtagagagagatgcaagtttcctatccttattagtccttaggtagagagagatgcaagtttcctatccttattagtcctt
gi|27 : agagagagatgcaagtttcctatccttataagtccttgcgtagagaCTA-TCCTT--ATT-----AGTCCTTAGGTAGAGAGAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTaggtagagagagatgcaagtttcctatccttattagtcctt
gi|28 : agagagagatgcaagtttcctatccttataagtccttgcgtagagagagatgcaagtttc--TAC-CAAGGA-----------ATTATATACAG-------A-----AG-G--A-AAG-GCAGCTG-ACTG--AGAT-TT----TGTGAATGC--TTGC-----TT---TACTA---AAAAT
gi|3 : taTCATTTATCAATTTG-GCTCATTAAAATTCCA--TATTATA-T-TAA-TTT--TAC-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-G-GCAACTG-ATTG--AGAT-TT----TGTGAACCC--CCACG--TATT---CATGC---AAAATC--TCGCAATATCTTGTTTTT--CAT-----TATC-TTAACTTCTGTTCATCTC-------AGG-G--ACACA----------A-ATCAAA--AT-TC--TTACTCTGCAGAAGGAA--AT-TA-T-C-A-TAAAAAAAATAC-CA-ATTCCCAGAAAT--TTGTGTT--TTA-AAT--TGTTGAAGTACTTTTG-ATTA-CAAAATTTATATACTG-CAGCTAAAA-TAA-CAA-C-A-AA-TT-ACAAGAAACTTTTCTTCA-AA-CCTC-AAT------ATCTTTCA-TT-------CAAG---ATC----ATTTTGCTT----GATCGAAACATGTTTA-A-A-C------AT-------C---AACGATTAC----ATACA----AATTA-AGTT-------TATGTACAAGAAATCAGTTGCATGTGAATTATGAATGATTAATT-TGCCAAA-T-TATTAATTCTTT--GTGTTCTA-TT-TT--CTC-----AACATTTAGCCAG---CAGATGCAAGTTTCCTATCCTTCTAT--ACA-A-GCCCTTG---A--T----T---TTACATATGG--TGACTCAATGAT-TGCGTCAA---ATTA-ACTCAAAATGAAT--GCATTTCAATGACagtccaaaacttaaaaaatcttcttctcttgaacggccc
gi|30 : aaatgcattga--TATCTTA-T-TA--TTT--TGCACAAAGA-----------CTTATATGGAG-------A-----AG-G--A-A-ATGCAACTC-GTTT--ACGT-TTGAAATATAA---C--TAGCG--TACT---CATGCGTAAAAATtgaatttaagcatcagatttgtagataaaacactgcacagtat
gi|32 : tta---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTG---
gi|32 : tagaga---GAGATGCAAGTTTCCTATCCT----T--ATT-A-GTCCTTggtagagagagatgcaagtttcctatccttattagtcctt
gi|34 : tagagagagatgcaagtttcctatccttattagtccttgggtagaga---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---G--T----
gi|34 : ga---GAGGTGCAAGTTTCCTATCCTTCTagagagaggtgcaagtttcctatccttct
gi|35 : gagaggtgcaagtttcctatccttctatataagtccttggtagagaAAGTACTTTTG-ATTA-CAAAATGTGTATACTG-CAACTAAAA-AAT-CAA-
gi|36 : CAGA--GAGATGCAAGTTTCCTAgtgaagtacttgtgatt
gi|36 : aACATTTAGTAGA---GAGATGCAAGTT-----TCCTTCTAT--ATA-A-GTCcatttagtagagagatgcaagtttccttctatataagtc
gi|37 : acagagagatgcaagtttcct---GAGAAGCAAATTTCCTATCCTTCTAT--ATA-A-GTCCTTG---
gi|4 : gaTTCACCGGAA--CCTATTATTATG-T-TCA-TTT------CAAGGA-----------ATTACATAGAG-------A-----AG-G--A-AAG-GCAATTG-ATTG--ATAT-TT----TGTGAACGT--TCGCG--TATT---CATGC---AAAATT--TCACAATATCTCGTTTTC--A-T-----TATC-TTAATTTCCATTCATCTC-------AGT-A--ACACA----------A-ATCAAA--GT-TC--TTACATTGCAGAATGAA--CT-TC-T-C-A-TAAAAA-------------------AAT----GTGTT--TAA-TAG--TGTTGAAGTACCTCTG-ATTA-CAAAGTTTGTATACTG-CAACTAAAA-TAA-CAA-C-A-AT-TT-ACAAGAACTTTTACTTCA-A-------------------------------------G---ATA----ATTTTTCGT----GATCATAACA-ATTTA-TTA-C------AT-------C---TAAGATTAC----ATACA----ACTTACATTT-------TATGTACAAGTAATCAGTTGCCTTTACACTATGAATGGTTAATT-TTCCAAA-T-AACTAATCCTTC---TGTGCTA-TT-TC--ATC-----AACATTAAGTCAG---GAGGTGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---G--T----T---gatatgcaagaacaataagt
gi|40 : taacacgtagttaagtcacacgtgtacacaaataatgtacatactcgctgaaataaaatgatat--TAT-CAAGGA-----------ATTATATAGGG-------A-----AG-G--A-A-ATGCAAATG-cttttgaagtgtattttggatatacatcataaaacgagtaataaaagattcattgttaaaaattccaggtcattcc
gi|41 : aaaca--TAC-CAAGGA-----------ATTATATGGAG-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ttgtacactcgcg
gi|42 : --TAC-CAAGGA-----------ATTATATAGAA-------A-----AG-GA-A-A-G-GCAGCTG-ACTGGTAGGT-Ta
gi|43 : AGATGCAAGTTTCCTATCCTTCTAT--ATA-A-GTCCTTG---A--T----T---TAACAa
gi|44 : ---GAGATGGAAGTTTCCTATCCTTCTAT--ATATATGTCCTTG---
gi|46 : aGAAGCAAGTTTCCTATCATTCTAT--ATA-C-ATCCTTG---
gi|47 : gagtTTGGTAGA---GAGTTGCAAGTTTTCTATCCTTCTAT--
gi|48 : agtcc-CAAGGA-----------CTTATATAGAG-------A-----AGAA--A-A-A-GCAACTG-TTT
gi|5 : gagTCATTTAT----TTGAGTTCATCGACA--CTG--TTTTATA-TATAA-A-----AA-CAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AAAG-TT----TGTGAACGC--TTGCG--TATC---CACGT---AAAATC--TTGTAATATCTCATTTTT--AAT-----TATC-TTCGCCTCCATTTATCCC-------AGG-A--ACACA----------A-ATTACAT-AT-T---TTACACTGCAAAATGAA--AT-TG-C-A-A-TCAAAACAATAC-C--ATACCC-GAAAT--GTGTGTT--TAT-AAT--TGCTGAAGTCCTTGTG-ATTA-C-ATATGTGTATACTG-CAGCTAATA-TAA-CGA-C-A-AA-TT-AC--GAAATTTT----------CCTC------------------------------------------ATTTTGCGT----GATCGAAACATGTTAA-A-A-C------AT-------C---TAGGATTAC----ATACA----ACTTACAGTC-------TATGTACAAGAAATCAGTTGCCTGTGAATTATGAATGATTTATT-CA-CAAA-T-TACGAATCTTTT--GTGTGCTG-TT-TT--ATC-----AACATATAGTCAG---GAGATGCAAGTTTCCTATCCTT
gi|6 : gatactgttgatcatccggctttggattaaattttagatttttaac-TGA-CTT--TATTCTAGGA-----------ATTATATAGAG-------A-----AG-G--A-A-ATACAACTG-ATTG--AGAT-TT----TCTGAATGC--TTGCA--CATT---CATGC---AAAATC--TCGCAGTATCTCATTTTC--AAT-----TAAC-TTAACCTCCATTCATC------------------------------------AAA--AT-TC--TTGCTTTGCAGAATGAA--AT-TC-T-C-A-ACGAACCAATAC-CA--TTCCCAGCAAT--TTGAGTT--AAA-AAT--TGTTAAAGTACTCCTA-ATTA-CAAAATTTGTATACTG-CAGGCAAGA-TAA-CAA-TGA-AA-TT-GTGAGTAAATTTACTTCC-AA-CCTC-AAT------ATCTTTAT-TT-------CAAG---ATC----ATTTTATTT----GATCAAAGCATATTAA-A-A-C------AT-------C---TAAGATTAC----ATACA----ATTTACAGGT-------TATGTACAAGAAA-CAGTTGCCTGTGAATTCTGAATCATTAATA-TGCCAAA-T-AACTAATCCTTT--GTGTGCTA-TT-TA--ATC-----AACATAAAGTCAG---AAGATGCAAATTTCCTATCCCTCTAT--ATA-A-GTCCTTgataaaaataaacaaatattaaaataaagttatgttatataaatcaatttatattttattactacgaataac
gi|7 : aaaatttaatctcttaaattgtattttgaaaaaaaccGTTTTT--AAT-----TATC-TTCACTTCCATTCATCTC-------AGG-A--ACACA----------A-AACAAA--AT-TC--TTACACTGCAGAATAAA--AT-TG-T-C-A-TCAAAACAATAC-CA---TTGCGGGAAT--TTGTGTT--TAA-AAT--ATTTTAAGTACTTCTG-ATTA-CAAATTGTGTATACTG-CAGCTAAAA-TAA-CAA-C-A-GT-TT-ACAATAATTTTT-TTTCA-AA-CCTC-AAT------ATCTTTAA-TT-------CAAG---AGC----ATTTTGTGT----AATTGAAACATGTTTT-A-A-C------AT-------C---TAAGATTAC----ATACA----ACTTACAGTT-------TATGTACAAGAAATCAGTTGCCTATGAATTATGAATGATTAATT-TG-TAAT-T-TATGAAGCTTTC--GTGGGCTG-TT-TC--ATC-----AACATTTAGTTAG---GGGATGCAAGTTTCCTATCCT--TAT--ACA-A-GTCCTTG---G--T----T---ATACcctataatataatgttttatttctattatataaaatagtttctacttttaataaagcacatacaagcttgaatttaaaat
gi|8 : tC-TAAGGA-----------ATTATATAGAG-------A-----AG-G--A-AAG-GCAACTG-ATTG--AGGT-TT----CGTAAACGC--TCGCG--TATT---CACAC---AAAATC--T-----TAT-----------AAT------ATC-TTAACTTCAATTCATCTC-------AGG-A--ACTCA----------A-ATCAAA--CT-TC--TAACATTGCAGAATGAA--AT-TC-T---A-TCAAAACAATAC-CA--TTCCCAGCAAT--TTGTGTT--TAA-AAT--TGTTAAAGTACTTCTG-ATTA-CAAAATGGGTGGACT--TAGCTAAAA-TAA-CAA-C-A-AA-TT-ACGAGAAATTTTACTTCA-AA-CCTC-AAT------ATATTTAA-TT-------CAAG---ACC----ATTTTA----------------------A-A-A-C------AT-------T---TAAAATTGC----ATACAACTGACTTACATTT-------TATATACAAGAAATCAGTAGCTTGTGAACTATGAAAGATTAATT-TGCCAAA-T-AATCAATTCTTCGTGTGTGTTA-TT-TT--ATC-----AACATTTAGTCAT---GAAATGCAAGCTTCCTATCCTTCTAT--ATA-A-GTCCtcatgtgcagattcatgtcctatataagatcatttatcttcgtccatcacgaaaactgattgccatatataaccttttgggtgcgttgataatggtgttaaaccaagtagaaaaaaaaaaattatgaaagaactgtgaagcaaagtgccaaaatgtggtcatgtggaaatgatatgattgtga
gi|9 : tgattagtttacatttgcataatcaagacacttgtatgaataattcatgtatttataacaaaacaaacatttgacattcgaatgaactgagcccgtgtggttccggAAGTTGCCTTTCCTTCTCTCTATA-A-GTCCTTG---C--T----A---TCGCTTAGTG--TCAATAAATGAT-TTC--CAGTTTATTA-A-ATATAAT-ATT--A--TTATATT
gi|9 : atttgcacgaaataaaatat--TAG-CAAGGA-----------CTTATAGAGAG-------A-----AG-G--A-AAG-GCAACTT-ATTT--AGAT-GG----TATGAATGC--TCGCA--TATT---CATGC---AAAATC---------A---CGTTTTC--AAA-----TATC-AGGACTGCCATACATCTC-------ATA-A--ATACA----------A-ATTAAA--AT-GT--TTTCTTTGCACAATGGA--GC-TCCT-T-A--CAAAATGAGAC-CA--TTCCCATCAAA--TTGTGTG--TAA-AAT--TGTTGAAGTACTTATG-ATTA-CAAAATTTGTATACTG-CAACTAAAA-TAT-TAA-GGA-AA-GT-ACTTAAAATTATACTTCA-AA-CTGC-AAT------ATTTTAAA-TT-------CAAG---ATC----ATTTTGCGT----GTTTAAAACATACA-A-A-A-C------AT-------C---TAGGGTTAC----ACAGA----TCCTACATTT-------TATGAAAAAGAAATCAGTTGCCTGTGAA------------AATT-AG--AAACT-TATTAATTCTTA--GTATGCTA-TT-TT--ATA-----AACATTTAGTAGA---GAGATGCAAGTTTCCAATCCTTCGAT--ATA-A-GTCCTTatttagatggtatgaatgctcgcatattcatgcaaaatcacgttttcaaatatcaggactgccatacatctcataaatacaaattaaaatgttttctttgcacaatggagctccttacaaaatgagaccattcccatcaaattgtgtgtaaaattgttgaagtacttatgattacaaaatttgtatactgcaactaaaatattaaggaaagtacttaaaattatacttcaaactgcaatattttaaattcaagatcattttgcgtgtttaaaacatacaaaacatctagggttacacagatcctacattttatgaaaaagaaatcagttgcctgtgaaaattagaaacttattaattcttagtatgctattttataaacatttagtagagagatgcaagtttccaatccttcgatataagtcctt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): TAAGCCCATTTGAAGAGTGTAACGTAATTACATGTTATATTTGACGCCCAGCTTTATTGCAGGAGAAATAACTGCGGATAAACCTTAGTATAACCACCTTGCACTTGCAA
Unaligned ( gi|31 ): ATTTATTTTCAAAATAGCATTTGATCTTCTATTATTTCTATTTGGCCTCAAGCACTCAGTCATGGGTTTTTTTATTGATCAAGG
Unaligned ( gi|33 ): GCAATATTCTAAATACAAGACAATTTTGCAAGTTTAAAATTTTATAAAACAACTAATATTACATACACCTT
Unaligned ( gi|38 ): GTTTGTTATCAAATTCCTTCAATGAACCTATATACATGTATTTACTTATTTTTT
Unaligned ( gi|39 ): GGCTCACTGGCTTTCTTTTTAATGATATGCATTTGTCAATTGCGAGTAGTTCA
Unaligned ( gi|45 ): ATCAAATCAAAATAGCATTCTTTTTTTTTATAGTCAATT
Unaligned ( gi|49 ): TACATTTATATTTGACATCCAGTTTTATTGCAGGA