lowQualScore                  :                                                  1                             
lowQualScore                  :                     1   3 3                      1      3                      
lowQualScore                  :                     .   . .                      .      .                      
lowQualScore                  :                     9   8 6                      2      4                      
consensus                     :   AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
Reference ( gi|4 )            :   AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
gi|8                          :   AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCA
gi|1                          :   AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGTGACCGGGGACCAGT
gi|7                          :  tAGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTGTTATATTATATGAGACCGGGGACCA
gi|3                          :   AGCATGGTTCTAGGACCC-AAA-AATGCTCTCGACGTTGCCTTCGCA-TCTTATATTATATGAGACAGGGGACCAGT
gi|12                         :   AGCCTGGTTCTCGGACCC-AAA---CGCTCTCGGCGTTGCCTTCGCATTC-----TTATATGAGACCGGGGACCAG
gi|5                          :   AGTCTGGTTTTCTGACCG-AAA-AATGCTCACGGCTTTGCCTTCGCA-ACTTAT-TTATATGAGACCGAGGACCAGT
gi|18                         :   AGCCTGGTTCTCGGACTC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTc
gi|21                         :   AGCATGGTTCTCGGACCC-GAA-A-TGCTCTCGGCGTTGCCTTCGCATaggggaccag
gi|11                         :   AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCc
gi|2                          :  tAGTCCGGTTCTCTGACCC-AAATA-AGCCCTCGGCGTTGCCGTCGCA-TCTAAT-TCATAGTATACCGAGTACCAATccggtatacgctgatgtgatagcaaactag
gi|19                         : atAGCCTGGTTCTCGGACCCAAAA-A-TGCTCGAAGTGATGC---CGCATTTTTA----AAATGA-ACCG
gi|23                         :   AGTCTGGTTCTCTGACCA-AAT-A-TGCTCTCGGCGTTGC
gi|22                         :   AGTCTGGTTCTCTGACCC-AAATA-TG--CTCGGCCTTGCC
gi|14                         :  ctGCCTGGTTCTTGGACCT-AAA-A-TGCTCTCAGTGTTGCCTTCGCA-TCTTATATTATATGAGACCGG
gi|15                         :    GCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGTGTTGCATTCGC-----TATATTATATGAGACCGGGGA
gi|20                         :    GCCTGGTTCTCGGACCT-AAA-A-TGCTCTCGACGTTGCCTTCGCCTTCT
gi|9                          :     CCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATT-TTAAATAATATAAGACCGGGGACCAaggggacca
gi|6                          :      CTGGTTCTCGGACCC-AAA-A-TGCGCTTGGCGTTGCCTTCGCA-TCTTATATTATATAAGACCGGGGACCAGT
gi|16                         :     agTGGTTATCGGACCC-AAA-A-TGCTTTCGGCGTTGCCTTC----------ATTATATGAGACCGGGGACCA
gi|17                         :       gGGTTCTCGGAC-------G-TTCTCTCGAAGTTGCCTT---AATCTTATATTATATGAGACCGGAGAGCAGa
gi|10                         :           TCTCTAACCC-TAA-A-TACTCTCGGCATTGCCTTTGCA----TATTTTTCAAAAGACCGATGACCAGT
gi|13                         :                     tcggaa-TGC-CTCGGCCTTGTCTTCGC-CTCTTATTTTATATGAAACCGGAGACCAGc

lowQualScore                  :                                                              1                             
lowQualScore                  :                                 1   3 3                      0      2                      
lowQualScore                  :                                 .   . .                      .      .                      
lowQualScore                  :                                 8   6 5                      1      6                      
consensus                     :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
Reference ( family-1457 )     :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
gi|1                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGTGACCGGGGACCAGT
gi|10                         :                      tTCTCTAACCC-TAA-A-TACTCTCGGCATTGCCTTTGCA----TATTTTTCAAAAGACCGATGACCAGT
gi|11                         :         tcggaaAGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCc
gi|12                         :              tAGCCTGGTTCTCGGACCC-AAA---CGCTCTCGGCGTTGCCTTCGCATTC-----TTATATGAGACCGGGGACCAGccggtatacgctgatgtgatagcaaactag
gi|13                         :                                       -TGC-CTCGGCCTTGTCTTCGC-CTCTTATTTTATATGAAACCGGAGACCAG
gi|14                         : ttccgagttttcagtGCCTGGTTCTTGGACCT-AAA-A-TGCTCTCAGTGTTGCCTTCGCA-TCTTATATTATATGAGACCGGa
gi|15                         :                GCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGTGTTGCATTCGC-----TATATTATATGAGACCGGGGA
gi|16                         :                   TGGTTATCGGACCC-AAA-A-TGCTTTCGGCGTTGCCTTC----------ATTATATGAGACCGGGGACCA
gi|17                         :                   gGGTTCTCGGAC-------G-TTCTCTCGAAGTTGCCTT---AATCTTATATTATATGAGACCGGAGAGCAGa
gi|18                         :               AGCCTGGTTCTCGGACTC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCT
gi|19                         :               AGCCTGGTTCTCGGACCCAAAA-A-TGCTCGAAGTGATGC---CGCATTTTTA----AAATGA-ACCGaggggaccag
gi|2                          :               AGTCCGGTTCTCTGACCC-AAATA-AGCCCTCGGCGTTGCCGTCGCA-TCTAAT-TCATAGTATACCGAGTACCAAT
gi|20                         :              atGCCTGGTTCTCGGACCT-AAA-A-TGCTCTCGACGTTGCCTTCGCCTTCT
gi|21                         :               AGCATGGTTCTCGGACCC-GAA-A-TGCTCTCGGCGTTGCCTTCGCATaggggacca
gi|22                         :               AGTCTGGTTCTCTGACCC-AAATA-TG--CTCGGCCTTGCCc
gi|23                         :             ctAGTCTGGTTCTCTGACCA-AAT-A-TGCTCTCGGCGTTGC
gi|3                          :               AGCATGGTTCTAGGACCC-AAA-AATGCTCTCGACGTTGCCTTCGCA-TCTTATATTATATGAGACAGGGGACCAGT
gi|4                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
gi|5                          :               AGTCTGGTTTTCTGACCG-AAA-AATGCTCACGGCTTTGCCTTCGCA-ACTTAT-TTATATGAGACCGAGGACCAGT
gi|6                          :                  CTGGTTCTCGGACCC-AAA-A-TGCGCTTGGCGTTGCCTTCGCA-TCTTATATTATATAAGACCGGGGACCAGTc
gi|7                          :             agAGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTGTTATATTATATGAGACCGGGGACCA
gi|8                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCA
gi|9                          :                 CCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATT-TTAAATAATATAAGACCGGGGACCA

lowQualScore                  :                                                              1                             
lowQualScore                  :                                 1   3 3                      0      2                      
lowQualScore                  :                                 .   . .                      .      .                      
lowQualScore                  :                                 8   6 5                      1      6                      
consensus                     :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
Reference ( family-1457 )     :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
gi|1                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGTGACCGGGGACCAGT
gi|10                         :                      tTCTCTAACCC-TAA-A-TACTCTCGGCATTGCCTTTGCA----TATTTTTCAAAAGACCGATGACCAGT
gi|11                         :         tcggaaAGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCc
gi|12                         :              tAGCCTGGTTCTCGGACCC-AAA---CGCTCTCGGCGTTGCCTTCGCATTC-----TTATATGAGACCGGGGACCAGccggtatacgctgatgtgatagcaaactag
gi|13                         :                                       -TGC-CTCGGCCTTGTCTTCGC-CTCTTATTTTATATGAAACCGGAGACCAG
gi|14                         : ttccgagttttcagtGCCTGGTTCTTGGACCT-AAA-A-TGCTCTCAGTGTTGCCTTCGCA-TCTTATATTATATGAGACCGGa
gi|15                         :                GCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGTGTTGCATTCGC-----TATATTATATGAGACCGGGGA
gi|16                         :                   TGGTTATCGGACCC-AAA-A-TGCTTTCGGCGTTGCCTTC----------ATTATATGAGACCGGGGACCA
gi|17                         :                   gGGTTCTCGGAC-------G-TTCTCTCGAAGTTGCCTT---AATCTTATATTATATGAGACCGGAGAGCAGa
gi|18                         :               AGCCTGGTTCTCGGACTC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCT
gi|19                         :               AGCCTGGTTCTCGGACCCAAAA-A-TGCTCGAAGTGATGC---CGCATTTTTA----AAATGA-ACCGaggggaccag
gi|2                          :               AGTCCGGTTCTCTGACCC-AAATA-AGCCCTCGGCGTTGCCGTCGCA-TCTAAT-TCATAGTATACCGAGTACCAAT
gi|20                         :              atGCCTGGTTCTCGGACCT-AAA-A-TGCTCTCGACGTTGCCTTCGCCTTCT
gi|21                         :               AGCATGGTTCTCGGACCC-GAA-A-TGCTCTCGGCGTTGCCTTCGCATaggggacca
gi|22                         :               AGTCTGGTTCTCTGACCC-AAATA-TG--CTCGGCCTTGCCc
gi|23                         :             ctAGTCTGGTTCTCTGACCA-AAT-A-TGCTCTCGGCGTTGC
gi|3                          :               AGCATGGTTCTAGGACCC-AAA-AATGCTCTCGACGTTGCCTTCGCA-TCTTATATTATATGAGACAGGGGACCAGT
gi|4                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
gi|5                          :               AGTCTGGTTTTCTGACCG-AAA-AATGCTCACGGCTTTGCCTTCGCA-ACTTAT-TTATATGAGACCGAGGACCAGT
gi|6                          :                  CTGGTTCTCGGACCC-AAA-A-TGCGCTTGGCGTTGCCTTCGCA-TCTTATATTATATAAGACCGGGGACCAGTc
gi|7                          :             agAGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTGTTATATTATATGAGACCGGGGACCA
gi|8                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCA
gi|9                          :                 CCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATT-TTAAATAATATAAGACCGGGGACCA


blockSeqs                     :                                 A   T A                      T      T
blockSeqs                     :                                 .   T A                      C      T
blockSeqs                     :                                 .   . .                      A      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      T      A
blockSeqs                     :                                 .   . .                      .      A
blockSeqs                     :                                 .   . .                      .      .
blockSeqs                     :                                 .   . .                      .      .
blockSeqs                     :                                 .   . .                      .      .
blockSeqs                     :                                 .   . .                      .      .
blockSeqs                     :                                 .   . .                      .       
blockSeqs                     :                                 .   . .                      .       
blockSeqs                     :                                 .   . .                      .       
blockSeqs                     :                                 .   . .                              
blockSeqs                     :                                 .   . .                              
blockSeqs                     :                                       .                              


blockSeqCons                  :               
originalCons                  :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
finalCons                     :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT

lowQualScore                  :                                                              1                             
lowQualScore                  :                                 1   3 3                      0      2                      
lowQualScore                  :                                 .   . .                      .      .                      
lowQualScore                  :                                 8   6 5                      1      6                      
consensus                     :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
Reference ( family-1457 )     :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
gi|1                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGTGACCGGGGACCAGT
gi|10                         :                      tTCTCTAACCC-TAA-A-TACTCTCGGCATTGCCTTTGCA----TATTTTTCAAAAGACCGATGACCAGT
gi|11                         :         tcggaaAGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCc
gi|12                         :              tAGCCTGGTTCTCGGACCC-AAA---CGCTCTCGGCGTTGCCTTCGCATTC-----TTATATGAGACCGGGGACCAGccggtatacgctgatgtgatagcaaactag
gi|13                         :                                       -TGC-CTCGGCCTTGTCTTCGC-CTCTTATTTTATATGAAACCGGAGACCAG
gi|14                         : ttccgagttttcagtGCCTGGTTCTTGGACCT-AAA-A-TGCTCTCAGTGTTGCCTTCGCA-TCTTATATTATATGAGACCGGa
gi|15                         :                GCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGTGTTGCATTCGC-----TATATTATATGAGACCGGGGA
gi|16                         :                   TGGTTATCGGACCC-AAA-A-TGCTTTCGGCGTTGCCTTC----------ATTATATGAGACCGGGGACCA
gi|17                         :                   gGGTTCTCGGAC-------G-TTCTCTCGAAGTTGCCTT---AATCTTATATTATATGAGACCGGAGAGCAGa
gi|18                         :               AGCCTGGTTCTCGGACTC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCT
gi|19                         :               AGCCTGGTTCTCGGACCCAAAA-A-TGCTCGAAGTGATGC---CGCATTTTTA----AAATGA-ACCGaggggaccag
gi|2                          :               AGTCCGGTTCTCTGACCC-AAATA-AGCCCTCGGCGTTGCCGTCGCA-TCTAAT-TCATAGTATACCGAGTACCAAT
gi|20                         :              atGCCTGGTTCTCGGACCT-AAA-A-TGCTCTCGACGTTGCCTTCGCCTTCT
gi|21                         :               AGCATGGTTCTCGGACCC-GAA-A-TGCTCTCGGCGTTGCCTTCGCATaggggacca
gi|22                         :               AGTCTGGTTCTCTGACCC-AAATA-TG--CTCGGCCTTGCCc
gi|23                         :             ctAGTCTGGTTCTCTGACCA-AAT-A-TGCTCTCGGCGTTGC
gi|3                          :               AGCATGGTTCTAGGACCC-AAA-AATGCTCTCGACGTTGCCTTCGCA-TCTTATATTATATGAGACAGGGGACCAGT
gi|4                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCAGT
gi|5                          :               AGTCTGGTTTTCTGACCG-AAA-AATGCTCACGGCTTTGCCTTCGCA-ACTTAT-TTATATGAGACCGAGGACCAGT
gi|6                          :                  CTGGTTCTCGGACCC-AAA-A-TGCGCTTGGCGTTGCCTTCGCA-TCTTATATTATATAAGACCGGGGACCAGTc
gi|7                          :             agAGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTGTTATATTATATGAGACCGGGGACCA
gi|8                          :               AGCCTGGTTCTCGGACCC-AAA-A-TGCTCTCGACGTTGCCTTCGCATTCTTATATTATATGAGACCGGGGACCA
gi|9                          :                 CCTGGTTCTCGGACCC-AAA-A-TGCTCTCGGCGTTGCCTTCGCATT-TTAAATAATATAAGACCGGGGACCA