lowQualScore : 33333 111111111111111111111 11111111111111111111 11111111111111 55555555555555555555555555555555555555555555555555555555555 1111111111 1 1 22 22222222222222222222222222222222222 1111111111 1
lowQualScore : 7 2 33 5555 5 99 5 0 333 88888 1 1 2 77777777777777777 44 2 2 000000000000000000000 1 55555555555555555555 0 11111111111111 00000000000000000000000000000000000000000000000000000000000 444 3 0 1 22 3333333333 1 33333333 1 4444444444 2222 55 33333 1 1 11 1 6 2 1 8 1 1 1 88888888 1 4 11 66666666 22 3 3333 22 1 1 33 2 1 3 1 222 1 1 4444444 222 22 3333 33333333333333333333333333333333333 1 9999999999 44 333 1
lowQualScore : . . .. .... . .. . . ... ..... . . . ................. .. . . ..................... . .................... . .............. ........................................................... ... . . . .. .......... . ........ . .......... .... .. ..... . . .. . . . . . . . . ........ . . .. ........ .. . .... .. . . .. . . . . ... . . ....... ... .. .... ................................... . .......... .. ... .
lowQualScore : 8 7 77 7777 6 88 8 3 555 99999 8 3 1 77777777777777777 11 4 5 000000000000000000000 2 66666666666666666666 8 88888888888888 88888888888888888888888888888888888888888888888888888888888 000 8 6 0 33 1111111111 0 55555555 0 0000000000 1111 99 11111 4 4 99 3 5 9 3 0 3 4 4 33333333 4 1 99 11111111 00 1 0000 77 4 4 99 9 4 6 4 666 5 5 8888888 666 00 1111 66666666666666666666666666666666666 8 5555555555 55 555 2
consensus : CATAAAGCGTGGACTTTC-CGT--A----GTGCGTG-TGAATCTAACGTGACACCGGCACTTTCCAATTAAATAACA---CCGATAT----CAATATTGGAACCCTCCAATTGGAAAAC-CTCGGTT-CCCATTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----CG---A---------TTCCAATTTGG--------------AA--------------A---------T---N------A-------G--A------AA---ATT---CCAA-TTGGAA-A--TTT---AT-C---TT-T--------CCA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-T-G-G-A-A-A-GCATG------C-A-T-TT--T-------GG--GGGTC----TTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----AT-----AA----A--A-AA--------GTTTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAAATTCACTGTGTTGTG
Reference ( gi|5 ) : CATAAAGCGTGTACTTTC-CGT--A----GTGTGTT-TGAATATAACGTGACACCGGCACTTTCCAATTAAATAACA---CCGATA-----CAATATTGGAACCCTCCAATTGGAAAAC-CTCGGTT-CCCACTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----TG---A---------TTCCAATTTGG--------------AA--------------A---------T---A------A-------G--A------AA---ATT---CCAA-TTGGAA-A--TTT---AT-C---TT-T--------CCA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-T-G-G-A-A-A-GCATG------T-A-T-TT--T-------GG--GGATC----TTTAGATTATAATTGTGACATAAATCGGCAACATATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----AT-----AA----A--A-AA--------GTTTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAAATTCACTGTTTTGTG
gi|10 : CATAAAGCGTGAACTTTC-CGT--A----GTGCATG-TGAAAATAACCTGACACCGACACTTTCCAATTAAATAACA---CCGGTAT----CAATATT----------------AAAAC-CTCTGTT-CCCATTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----TG---A---------TTACAATTTGG--------------AA--------------A---------T---T------A-------G--A------AA----TT---CCAA-TTGGAA-A--TTT---AT-C---TT-T--------CCA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AA-T-G-T-A-A---GCATG------G-A-T-TT--T-------GG--GGGTC----TTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGGTTA-T--T-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTTCGATATTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----ATAAAA-AA----A--A-AA--------GTTTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAAATTCACTGTGTT
gi|1 : cCATAAANNNNNNNNNNNN-NNN--N----NNNNNNN-NNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACA---CCGATAT----CAATATTGGAACCCTTCAATTGGAAAAC-CTCGGTT-CCGATTG--A-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----CT---A---------TCCCAATTTGG--------------AACTTACAGGTTTGAAA---------T---T------A-------G--A------AA----TT---CCAA-CTGGAA-A--TTT---AT-C---TT-T--------CCA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-TTG-G-A-A-A-GCATA------T-A-T-TT--T-------TG--GGGTC----TTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--T-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----AT-----AA----A--A-AAT-------ATTTTTGG-AAT-AAAG--AG-----TTT--TT---CCAGAAATTCACTGTGTTGTG
gi|3 : CATAAANNNNNNNNNNNN-NNN--N----NNNNNNN-NNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACA---CCGATAT----CAATATTGGAACCCTCTAATTGGAAAAC-CTCGGTT-CCCATTG--G-------------CCAA--TTCTAAAA-ATAGGT---------------------TT-C-----CG---A---------TTCCAATTTGA--------------AA--------------A---------T---T------A-------G---------AA---ATT---CCAA-TTGGAA-A--TTT---AT-T---TT-T--------CCA-AC---------TTA----GA--C-----GAAAC-G-A--CTTTCC-AG-TGG-G-A-A-A-GCATG------C-A-T-TT-----------A--CGATC----TTTCGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTATTTA-C--C-GTTT-TGTGATTGCATAGTCGTACTCTTCAAAACTGTGGTACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----TT-----AAAAATA--A-AA--------GTTTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAAATTCACTGTGTTGT
gi|4 : cCATAAANNNNNNNNNNNN-NNN--N----NNNNNNN-NNNNNNNNNNNNNNNNNNNNCACTTTCAAATAAAATAACA---CCGATAT----CAATATTGGAACCCTCCAATTGGAAAAC-CTCGGTT-CTCATTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TTTC-----CA---A---------TTCCTATTTGG--------------AA--------------A---------T---G------A-------G--A------AA----TT---TTAT-TTGGAA-AA-TTT---AT-C---TT-T--------CCA-AC---------TAG----GA--C-----GAAAC-G-A--CTTTCC-AG-T-G-G-GTA-A-GCATG------C-A-T-TG--T-------GG--GGGAC----TTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TATGATCGAACAGTCGTACTCTTC-AAACTGCGATACTTTGCCA---AT-AAAA-ATG-------A---CAAA--AG----ATGGA--AA----A--A-AA--------GTTTTGGG-AAA-AAAG--AG-----TTT--TT---CCAGAAATTCACTCTGTTGTGatt
gi|6 : CATAAANNNNNNNNNNNN-NNN--N----NNNNNNN-NNNNNNNNNNNNNNNNNNNNCACTTTCTAATTAAATAACA---CCGATAT----CAATATTGGAATCCTCCATTTGGAAGAC-CTCTGTT-CCCATTG--G-------------CCAA--TTTTAAAA-ATAGAT---------------------TT-C-----TG---A---------TTCCAATTTTG--------------AA--------------A---------T---T------A-------G---------AA---ATT---CCAA-TTGGAA-A--TTT---AC-C---TT-T--------CCA-AC---------ATG----GA--C-----GAAAC-G-A--CTTTCC-AG-TGG-G-A-A-A-GCATG------C-A-TATT--T-------GG--GG-TC----TTTAGATTATAATTGCGACATAAATCGG-AAT-TGTG-A--CTTTTGGTTA-C--C-TTCT-TGTGATCGCACAGTCATACTCTTT-AAACTGCAATACTTTGTCA---AT-AAAA-AT--------A---CGAA--AG----ATAAA--AA----A--A-AA--------GCTTTTCG-AAA-AAAG--AG----TTTT--TTTCCCCAGAAATTCACTGTGTTGt
gi|8 : CATAAAGCATAGGCTTTT-CGT--A----GTCCGTG-TAAATTTAACGTGACACCGACA------AATTAAATAACA---ACGATAA----CAATATTGGAACCCTTCAATTGGAAAAC-CTCGGTT-CCCATTT--G-------------CCAA--TTCTAAAA-ATAGAT---------------------T-------------------------CCAATTTGG--------------AA--------------A---------T---A------A----------A------AA---ATT---CCAA-TTGAAA-A--TTT---AT-C---TT-T--------CAA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-T-GAG-G-A-A-GCATG------C-A-T-TC--T--------T--GCATC----TTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ACGCTTTTGGTGA-CTTT-TTTT-TATGATCCAACTGTCGTATTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATCTTTCGTTA---TGAA--AG----AT-----A-----------------------------AAA-AAAG--AG----TTTTC-TT---CCAGAAATTCACTGTGCTGTG
gi|7 : cCATAAANNNNNNNNNNNN-NNN--N----NNNNNNN-NNNNNNNNNNNNNNNNNNNNCACTTTCAAATTAAATAACA---CCGATAT----CTATATTGGAACCCTCCAATTCGTAAAT-CTCGGTT-CCAATGG--G-------------CCAG--TTCTAAAA--TAGAT---------------------TT-C-----CG---A---------TACCAATTTGG--------------AATTT-----------A---------C---AGGTTGGA-------G--ATTAG--AA---ATT---CCAA-TTGGAA-A--TTT---AT-C---TT-T--------CGA-AC---------TTG----GA--C-----GAAAC-A-A--CTTTCC-AG-TTG-G-A-A-A-GCATG------C-A-T-TT--T-------TG--GGGTC----TTTAGATTATAATTGTGACATAAATTGGCAATTTATA-ATGCTTTTGATTA-C--CTTTTT-TGCGACCGCACAGTCGTTTTCTTC-AAACTGCGGTACTTTGCTT---AT-AAAA-ATA-------A---CGAA--AG----AT-----AA----A--A-AAAG------ATTTTTGG-AAATTGAG--TG----TTTT--Tt
gi|9 : cCATAAAGCGTGGACTTTC-CCT--A----GTG-GTTGTCAATCTAACGTGACACCATCACTTTCAAATTAAATAACA---CCGATAT----CAAT--TGGAACCCTCCAATTGGAAAAC-CGTAGTT-CCAATTG--G-------------CAAA--TTCTAAAC-ATAGAT---------------------TT-C-----CT---A---------TTCCAGTTTGG--------------CA--------------ATTACAGGTTT---A------A-------A--ATTAG--AA---ATT---CCAA-TTGAAA-A--TTT---AA-C---TT-T--------CAC-GC---------TTG----GA--C-----AAAAC-G-T--CTTTCC-AA-T-G-G-A-ATA-ACATG------C-A-T-TT--T-------TG--GGGTC----CTATGATTATATTTGTGCCATAAATT---------------CTTTTGATTA-CTTT-TTTT-TGTGATAGCACAGCCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-GAAA-ATT-------G---CGAA--AG----AT-----AA-------------------------GA-AAA-CAA---------------TT---CCAGAAATTCACTGTGTTGTGc
gi|22 : tCATAAAGCGTGGATTTTTTCGT--A----GTACGTG-AGAATCTAGTGTGACACCGATACt
gi|32 : aCATAAAGCTTAGGCTTTC-CAT--A----GTGCGTG-TGACTATAACGTGACACCAGCTCTTTCCAATTAAATAACA---CCGATcaaatggaactctcaaactggagagtcgtgattcaatttttctagtgaggagcatgcgtttttattttggtctttaaattacaattatgagctaaatcgggaacatatgatgcgtttggttaccattttgttgtcgtatagtcgtatctttaaaactgcggcatgttgtctataaaaataacgaaagattaataaacaattttggaaaaaaaatctttccagaaaatcactgttttat
gi|35 : cCATAAGGCGTCGACTTTC-CGA--A----GTCCGTG-TGAAATTAACATGGCATCGGCACTTT
gi|37 : cATAAACCGTGCCCTTTC-CAT--T----TTGCGTG-TGAATCTAACGCAACACCGG
gi|11 : aAAGCGTGGACTTTC-CGTGTA----GCGTGTT---AATATGACGTGAAACCGACACTTTCAAATCAAATAACA---CCGATAT----CAATAGTGGAACCCNNNNNNNNNNNNNN-NNNNNNN-NNNNNNN--N-------------NNNN--NNNNNNNN-NNNNNN---------------------NN-N-----NN---N---------NNNNNNNNNNN--------------NN--------------N---------N---N------N-------N--N------NN---NNN---NNNN-NNNNNN-N--TT----AC-C---TT-T--------CCA-AC---------TTG----GA--C-----GAAAC-G-A--ATTTCC-AGAG-G-G-A-A-A-GCATT------C-A-T-TT--T-------GG--GTTTT----TTTAGATTAAAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAACCGTACTCATC-AAA-TGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGGA--AG----ATTTATGAA----A--A-AA--------tt
gi|33 : AGCGAGTACTTTC-TAT--ATATAGCGCGTG-TGAATCTAACGTGACACCGG-ACTT---AATTGTAT-TCAGATCCGATA-----CAactattcactgtatt
gi|39 : C-TGT--A----GTGCGTG-TGAATCTAACGTGACAACG
gi|2 : cacCACTCTCCAATTAAAAAACA---CCGATAT----CAAT--TGGAAGCCTCCAATTGGAAAAC-CTCGGTT-CCCATTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----CG---A---------TTCCAATTTGGCAATTACAGGTTGGAA--------------A---------T---T------A-------G--A------AA----TT---TTAA-TTGGAA-A--TAT---AA-C---TT-T--------CCA-GC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-T-G-----------ATG------C-A-T-TT--T-------TG--GGGTC----TTTAGATTATAATTGTGACACAAATCGGAAATTTATA-ATGCTTTTGATTA-C--C-TTTG-TGTGATCGCACAATCGTACTCTTC-AAACTACGATACTTTGGCT---AT-AAAA-ATA-------A---CGAA--AG----ATAA---AA----A--A-AA--------GTTTTTGG-AAA-AAAT--AG-----TTT--TT---CCAGAAATTCACTGTGTTGTG
gi|14 : ccagaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTCCAATTAAATAACA---CCGATTT----CAATATTGGAACACTCCAATTTGAAAAT--------------TG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----TG---A---------TTCCAATTTGG--------------AA------------------------T----------------------------------TT---ACAGGTTGGAA-A--TTT---AT-C---TT-T--------CAA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-TTG-G-C-A-A-GCATG------C-A-TATT--T-------GG--GG-TC----TTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACATTGTCA---AT-AAAA-ATA-------G---CGAA--A-----AT--------------A-GA--------GTTTTCCA-AAA-AAt
gi|16 : catcaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCACTTTCCAATTAAATAACA---CCGATAT----CAATATTGGAACCCTTCAAATGGAAAAC-CTCGGTT-CCAATTG--A-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----CG---A---------TTCCAATTTGG--------------AA--------------ttcactgt
gi|12 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTCCAATTAAATAACA---CCGATATGGATCAATATTAGAACCTTCCAATTGGAAAAC-CTTGATT-CCCATTG--G-------------CCAA--TTCTCAAA-ATAGAT---------------------TT-C-----TG---A---------TTCCAATTTGG--------------AA--------------A---------T---T------A-------G---------AA---ATT---CCAA-TTAGAA-A--TGT---AT-C---CT-T--------CCA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-TGG-G-A-A-A-GCATG------T-A-T-TT--T-------GG--GGGTC----TTTAGATTATAATTGTGACATAAATCGGCAAATTATA-ACGTTTTTCGTTA-C--C-TTTT-TGTGATCGCACCGCCATACTCTTC-AAACTGTGATACTTTGTCA---AT-GAAG-ATA-------A---CGAA--AG----AT-----AA----A--A-AAAAAC----GTTTTTGG-AAA-AAA---AG-----TTT--TT---CCAGAAATTCACTGTGTTGTGtttacaggtttataagattataattgtgatttgaatcggcaactcataatgcttttggttaccttttgtgatcgcacagtcgtacttttcaaactgctatactttgtcaataaaaataacgaaagataaaataaaggtttttgaaaaaagagtgttttttttccaaaaattcactgtgttgtgtt
gi|13 : TTCCAGTTAAAAAACA---TCGATA-----CCA-ATTAGAACCCTCCAATTGGAAAAC-CTCAGTT-CCTATTG--G-------------CCTT--TTCTAAAA-ATAGATCTCCTATTATAAAAATAAATTTT-C-----CG---A---------TTCCAATTTGGTCATTACAGGTTGGAA--------------A---------T---T------A-------G--A------AA----TT---CCGA-TTGGAA-A--TTA---AA-A---TT-T--------CTA-AC---------TTG----GA--C-----AAGAC-G-A--TTTTTC-AG-C-G-GGA-A-A-CCATG------C-G-T-TT--T-------TG--GGGTC----TTTACATTATAATTGTGACATAAATCGACAATTTATA-ATGTTTTTGAATA-C--C-TTTT-TGTGATCGCCAAGTCGTACTCTTC-AAATTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG-----------------------A--------GTTTTTCA-AAA-tt
gi|17 : TTCAATTGAATAACA---CAGATAT----CAATATTGCAACCCTCCAATTGGAAAAC-ATCGGTT-TCAATTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----CG---A---------TTCCAATTTGG--------------AA--------------A---------T---T------A-------T--A------AT----TT---CCCA-TTGGAA-A--TTT---AT-C---TT-T--------CCA-AC---------TTG----GA--C-----AAAAC-G-A--CTTTCC-AG-T-G-GGA-A-A-GCATG------C-A-T-TT--T-------GTTTGTTTT----TTTAAATTATAATTATGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTT-AACCTGCGATACTTTGTTA---AT-AAGA-ATA-------A---CG--------------------------A-AA--------ATT----------AAAG--A------TTT--TC---CCATGAATTCACTGTGTTGTGcattcattgtgttgtgt
gi|23 : CAATTATATAACA---CTGATAT----CAATATTGGAACCCTCCAATAGGAAAAC-CTCGGTT-CACATTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----TG---A---------TTCCAATTTGA--------------AA--------------A---------T---T------A-------G---------AA---ATT---CGAA-TTGGAA-A--TTT---AT-T---TT-T--------CCA-AC---------TTG----GA--C-----AAAAC-G-A--CTTT---------------------------------T-TG--T-------GG--GGGTC----TTTAGATTATAATTTTGACATAAATCGGCAATTTAAA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-TAACTGCAATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----t
gi|15 : aTAAATAACA---CCGATAT----CAATATTGGAACCCTCCAATTGGAAAAC-CTCGGTT-CGCATTG--G-------------TCAA--TTCTTAAA-ATAGAT---------------------TT-C-----CG---A---------TTCCAATTTGG--------------AA--------------A---------T---T------A-------G---------AT---ATT---CCAA-TTGGAA-A--ATT---AT-C---TT-T--------CCA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTTC-AG-TGG-G-A-A-A-GCATG------C-A-T-TT--T-------GG--GGGTC----TTTAGATTATAATTGTGACATAAATCGGCAATTTATG-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----ATAC---AA----A--A-AA--------TTTTTTGG-AAA-AAAG--AG-----TTT--TT---CCAGAAATTCACTGTGTTGTG
gi|19 : AAA-AACA---CCGATAT----CAGT--TGGAACCCTCAAATTGGAAATA-CTCAGTT-CCGAGAG--A-------------CCAA--TTCCAAAA-ATAGAT---------------------TT-C-----CG---A---------TTCAAATTTGG--------------CA--------------A---------T---A------ACAGGTTGG--AAATGAGAA---ATT---CCAA-TTGGAA-A--TTT---AA-C---TT-T--------CCA-GC---------TTG----GA--C-----AAAAC-A-A--CTTTTC-AG-TGG-G-A-A-A-ACATG------C-A-T-TT--T-------TG--GGGTC----TTTATATTATGATTATGACATAATTCGGCAATTTATA-ATGCTATTGATTA-C--C-TGTT-TGTG--------------CTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----AT-----AA----A--A-AA--------ATt
gi|26 : AACCCTGCAATTGGAAAAC-CTCGGTT-CCAATTG--G-------------CCAA--TTCTAAAA-ATAGAT---------------------TT-C-----CG---A---------TTCCAATTTGG--------------AA------------------------T----------------------------------TT---ACAGGTTGGAA-A--TTT---AT-C---TT-T--------CTA-AC---------TTG----GA--C-----GAAAC-G-A--CTTTCC-AG-T-G-G-G-A-ACGCATG------C-A-T-TT--T-------TG--GGGTC----TTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATTGCACAGTCGTACTCTTC-AAACTGCGATcactgtgttgtgtttt
gi|14 : CCAACTGGAAAG---TCGTTT-C-----G--T-------------CCAA--GTTTGAAAGATAAAT---------------------TT-CCAACCTGTAAA---------TTCCAAATTGG---------------A--------------A---------T---C------A-------G--A------AATCTATT---T----TTAG-A-A--TTG---GC-CAA-TT-T--------TCA-AA---------TTG----GA--
gi|13 : catcaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatttcaatattggaacacAAAACGCATGGTTTCCCGCTG--------------------------AAAA-ATCG-----------------------TC-T-----TG--------------TCCAAGTTAG--------------AA--------------A---------TTTTA------A-------T---------------TT---CCAA-TCGGAA----TTT---CT-AA--TT-T--------CCA-AC---------CTGTAATGA--C-----CAAA---------TTGG-AA-TCG-G-A-A-A---ATT------T-A-T-TT--TTATAATAGG--AGATCTATTTTTAGAcaagcatgcatatttggggtctttagattataattgtgacataaatcggcaatttataatgcttttgattacctttttgtgatcgcacagtcgtactcttcaaactgcgatacattgtcaataaaaatagcgaaaatagagttttccaaaaaattcactgt
gi|31 : ttccagttaaaaaacatcgataccaattagaaccctccaattggaaaacctcagttcctattggcctttAAAC-CTAGG---CCTATTGTTG-------------CCAAATTTCTAAAT-ACA----------------------------------A---A---------TTCCAGATTGG--------------AA--------------G---------T---G------A----------A------AA---GTG---CC---TTGGAA-A--Ttggggtctttacattataattgtgacataaatcgacaatttataatgtttttgaatacctttttgtgatcgccaagtcgtactcttcaaattgcgatactttgtcaataaaaataacgaaagagtttttcaaaacattcattgtgttgtgt
gi|26 : gcGTT-CCCACTG--GAAAGTCGTTTCGTCCAAG-TTAGAAAG-ATAAAT---------------------------------------------TTCCAACCTGT--------------AA--------------A---------T----------T-------C--C------AA---ATT---GGAA-TCGGAA-A--TCT---AT-T---TT-TAGAATTGGCCA-A----------TTG----GAACC-----GA----G-G--TTTTCC-AA-T-agttaatttgaaac
gi|15 : aaccctgcaTT-CCCACTG--------------------------AAAA-GTCG-T---------------------TT-C------G--------------TCCAAGTTGG--------------AA--------------A----------------------------G--A------TA---ATTTT-CCAA-TTGGAA------T---AT-CTAATT-T--------CCA-AA---------TTG----GAATC-----GGAAgcatgcatttttggggtctttagattataattgtgacataaatcggcaattcataatgcttttgattacctttttgtgattgcacagtcgtactcttcaaactgcgat
gi|12 : taaataacaccgatatcaatattggaaccctccaattggaaaacctcggttcgcattggtcaattcttaaaatagatTT-CCCACTG--G------------------------AAA-GTCG-T---------------------TT-C------G--------------TCCAAGTTGG--------------AA--------------G-------------G------A-------T--A------CA---TTT---CTAA-TTGG-A-A--TTT---CTAA---TT-T--------CCA-AA---------TTG----GA--agcatgcattttgggggtctttagattataattgtgacataaatcggcaatttatgatgcttttggttacctttttgtgatcgcacagtcgtactcttcaaactgcgatactttgtcaataaaaataacgaaagatacaaaaaattttttggaaaaaagagtttttccagaaattcactgtgttgtgt
gi|3 : ctttccaattaaataacaccgatatggatcaatattagaaccttccaattggaaaaccttgattcccattggccaattctcaaaatagatttctgatTT-CCCACTG--G------------------------AAA-GTCG-T---------------------TT-C------G--------------TCTAAGTTGG--------------AA--------------A-------------A------A-------T--A------AA---TTT---CCAA-TTGG-A-A--TTT---CTAA---TT-T--------TCA-AA---------TTG----GAATC-----GGAAagcatgtattttgggggtctttagattataattgtgacataaatcggcaaattataacgtttttcgttacctttttgtgatcgcaccgccatactcttcaaactgtgatactttgtcaatgaagataacgaaagataaaaaaaaacgtttttggaaaaaaagtttttccagaaattcactgtgttgtgtt
gi|6 : ccataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaaccctctaattggaaaacctcggttcccattggccaattctaaaaataggtTT-CCCACTG--G------------------------AAA-GTCG-T---------------------TT-C------G--------------TCCATGTTGG--------------AA--------------A--------------------G-------G--T------AA---ATTT--CCAA-TTGG-A-A--TTT---CTAA---TT-T--------CAA-AA---------TTG----GA--agcatgcatttacgatctttcgattataattgtgacataaatcggcaatttataatgcttttatttaccgttttgtgattgcatagtcgtactcttcaaaactgtggtactttgtcaataaaaataacgaaagttaaaaataaaagtttttggaaaaaaagagtttttccagaaattcactgtgttgtatt
gi|17 : cataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttctaattaaataacaccgatatcaatattggaatcctccatttggaagacctctgttcccattggccaattttaaaaatagatttctgatTT-CCCACTG--G------------------------AAA-GTCG-----------------------TT-T-----TG--------------TCCAAGTTGG--------------AA--------------A-------------G------A-------T--A------AA---TTT---CCAA-TGGGAA-A--TT----AT-AA--TT-T--------CCA-AA---------TTG----GAATC-----GGAAagcatgcatatttggggtctttagattataattgcgacataaatcggaattgtgacttttggttaccttcttgtgatcgcacagtcatactctttaaactgcaatactttgtcaataaaaatacgaaagataaaaaaaaagcttttcgaaaaaagagtttttttccccagaaattcactgtgttg
gi|19 : ttcaattgaataacacagatatcaatattgcaaccctccaattggaaaacatcggtttcaattggccaattctaaaaatagatTT-CCCACTG--------------------------AAAA-GTTG-----------------------TT-T-----TG--------------TCCAAGCTGG--------------AA--------------A----------------------------GTTA------AA---TTT---CCAA-TTGG-A-A--TTT---CT-CA--TT-T--------CCA-AC---------CTG----agcatgcattttgtttgtttttttaaattataattatgacataaatcggcaatttataatgcttttggttacctttttgtgatcgcacagtcgtactctttaacctgcgatactttgttaataagaataacgaaaattaaagattttcccatgaattcactgtgttgtgt
gi|21 : aaaaacaccgatatcagttggaaccctcaaattggaaatactcagttccgagagaccaattccaaaaatagatttccgattcaaatttggcaataaTT-TCAACTT--T-------------CCAA--GT-TAAAATACGAAT---------------------TT-C-----CA---AGTTGGAACGTTCCAACT-GG--------------AA--------------T---------T---A------A------------------A---ATT---CCAAGTTGGAA-AAGTTG---A--A---TT-T--------CCA-AA---------T------GG--C-----AAAATTA-A--GTTTCC-AAAT-T-G-A-A-A-ACATG------T-G-T-TT--T-------GG--GG-TA----TTTTGGGTACAATTATGG-ATAATTTGA----------------TTGGTTA-C--C-TTTC-CGTGATTCCATTAACGTACTTGTC-AGATTGAGACATTTTGCCA---AT-CAAA-ATA-------ATTTCAAATTAA----AA-----AA----A--ACAA--------ATCT-----AGA-AAAGCTAT----TTTT--TT-------AAAT----TGTTTTCTGaacatgcatttttggggtctttatattatgattatgacataattcggcaatttataatgctattgattacctgtttgtgctcttcaaactgcgatactttgtcaataaaaataacgaaagataaaaaaatcactgtgttgtgtttt
gi|18 : taattaaatactttttatttccaacATTG--G-------------ACTA--TTCTAAAA-ATATAT---------------------TT-C-----CG---A---------TTCCAATTTAG--------------AA--------------A---------T---G------A-------G---------AA---ATT---CCAT-TTGGAA-A--TTT---GA-C---TT-T--------CCA-GC---------TTG----GT--T-----AAAAT-G-A--TTTTCC-AGTT-A-G-A-A-A-GCATG------C-A-T-TT--T-------TG--GGGTC----TTTAGATTATAATTGTAACATAAATCGGCAATCTATA-ATGCTTTTCATAA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGTGACACTCTGTCA---ATAAAAA-AAA-------A---CGAA--AG----AT-----AA----A--A-AA--------GTtt
gi|23 : atataacaagatattatttcaataattacgcttgcctaatcaaatgtttcaattTG--T-------------CCAAG-TTGGAAAA-ATAAAT---------------------TT-C-----CA---A---------TTCGAATTTCT---------------A--------------A---------T---T------T-------T--C------AA---ATT---GGAA-TCAGAA-A--TCT---AT-T---TT-T--------AGA-A----------TTG----GC--CAATGTGAACC-G-AGGTTTTCCTAT-T-G-G-A-aagagttcacttgtgttgtgt
gi|20 : acaattatataacactgatatcaatattggaacccA--TTCTAAAA-CTAGAT---------------------TT-C-----AC---A---------TTTCAAATTGG--------------AA--------------A---------T-----------------------------------T---ACAGGCTGGAA-A--TTA---GA-A---TT-T--------ACAGAA---------TTG-----A--C-----AAATC-G-A--TTTGAC-AG-TAG-G-A-A-A-GCATG------C-G-T-TT--T-------GG--TT-TC----TTTAGATTAAGATTGTGCAATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--T-TTTTTTGTGATCGCACAGTCGTGTTCTTC-AAACTGCGACATATTGTCA---AT-AAAA-AAA-------A---CGAA--AG----aaacgactttttgtgggggtctttagattataattttgacataaatcggcaatttaaaatgcttttggttacctttttgtgatcgcacagtcatactcttctaactgcaatactttgtcaataaaaataacgaaag
gi|25 : attggtttagCTAAAA-ATAGAC---------------------TT-T-----CG---T---------TACCAATTTGA--------------AA--------------C---------T---A------C-------C--G------AC---ATT---GGAA-TAGTAA-A-----------C---GT-T--------TCA-GC---------TTG----GA--A-----AAAAA-G-A--TTTTCC-AG-T-G-GGA-A-A-GCATG------C-A-T-TT--T-------TG--GTGTT----TTTAGATTACAATTGTGA------------------G-ATGTGTTTGGTTA-T--C-ATTT-TGTTATCGCAAAGTCGTACTCATA-AAACTGCAACGCTTTGTAA---AT-AAAA-A-A-------A---CGAA--AG----AT-----AA----A--A-AA--------CT-------AA---------------TTT--TT---CAAGAAATTTACTGTGTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttatcaattaaacttcgaatgttgatgttatctttcatttt
gi|21 : -----TG---T---------TTTCAATTTGG--------------AA--------------ACT-------T-----------------------------A---ATTTTGCCAT-TTGGAA-A--TTC---AA-CT--TT-T--------CCA-AC---------TTG----GA--
gi|10 : taattaaatactttttatttccaactttcaactttccaagttaaaatacgaatttccaagttggaacgttccaactggaattaaaatTCCAAGTTGG--------------AA--------------A-------------G------A-------T--A------AA---TTT---CCAA-TTGG-A-A--TTT---CTAA---TT-T--------CCA-AA---------TTG----tgtgttttggggtattttgggtacaattatggataatttgattggttacctttccgtgattccattaacgtacttgtcagattgagacattttgccaatcaaaataatttcaaattaaaaaaaacaaatctagaaaagctatttttttaaattgttttctgtt
gi|1 : ccataaagcgtgaactttccgtagtgcatgtgaaaataacctgacaccgacactttccaattaaataacaccggtatcaatattaaaacctctgttcccattggccaattctaaaaatagatttctgattaTCCAAGTTGG--------------AA--------------A-------------G------A-------T--A------AA---TTT---CCAG-TTGG-A-A--TTT---CTAA---TT-T--------CAA-AC---------CTG----cgaaacgactttccaatgtaagcatggattttgggggtctttagattataattgtgacataaatcggcaattcataatgcttttggttatttttttgtgatcgcacagtcatactcttcaaacttcgatattttgtcaataaaaataacgaaagataaaaaaaaaagtttttggaaaaaaagagtttttccagaaattcactgtgtt
gi|8 : cataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaacccttcaattggaaaacctcggttccgattgaccaattctaaaaatagatttcctatcccaatttggaacttaTCCAAGTTTG--------------AA--------------A-------------G------A-------T--A------AA---TTT---TCAA-TTGGAA-T--TTT---TT-A---TT-T--------CCA-AA---------TTG----GA--cgaaacgactttccagttggaaagcatatatttttggggtctttagattataattgtgacataaatcggcaatttataatgcttttggttacttttttgtgatcgcacagtcgtactcttcaaactgcgatactttgtcaataaaaataacgaaagataaaaaatatttttggaataaagagtttttccagaaattcactgtgttgtg
gi|7 : ccataaagcataggcttttcgtagtccgtgtaaatttaacgtgacaccgacaaattaaataacaacgataacaatattggaacccttcaattggaaaacctcggttcccatttgccaattctaaaaatagatTCCAAGTTCG--------------AA--------------A-------------G------A-------T--A------AA---TTT---CCAA-TTGG-A-A--TTTCTAAT-C------T--------CCA-AC---------CTG----cgaaacgactttccagtgaggaagcatgcattcttgcatctttagattataattgtgacataaatcggcaatttataacgcttttggtgacttttttttatgatccaactgtcgtattcttcaaactgcgatactttgtcaataaaaatctttcgttatgaaagataaaaaaagagttttcttccagaaattcactgtgctgtgt
gi|27 : ccataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttcaaattaaataacaccgatatctatattggaaccctccaattcgtaaatctcggttccaatgggccagttctaaaatagatttccgataccaatttggaatttaTTGG--------------AA--------------A---------T---T------A-------G--A------AA----TT---CAAA-TTGAAA-A--TTT---A-----------------------------------------------------AC-G-A--TTCTCC-AG-T-G-GGA-A-A-GCA-G------TCA-TGTT--T-------GA--GG-TC----TTTAGATTGTAATTGTGACATAAATTGGCAGTTTTTTTATGCATTTGATTA-C--C-TATT-TGAAATTGCGTTATCGTTCTCTTA-AAATTGCGACACTTTGTCA---AT-AAAACATA-------A---CGAA--A-------------A----A--A-AA--------G--------------AG--AG----TTTT--TT---TCAGAAATTCACCGTGTTGTcgaaacaactttccagttggaaagcatgcatttttggggtctttagattataattgtgacataaattggcaatttataatgcttttgattaccttttttgcgaccgcacagtcgttttcttcaaactgcggtactttgcttataaaaataacgaaagataaaaaaagatttttggaaattgagtgtttttc
gi|1 : TT---CCAA-CTGGAA-A--GTC---GT-T---TCGT--------CCA-AG---------TTG----GA--------AAGAT-A-A--ATTTCC-AGTT-G-G-A-A-t
gi|34 : cataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaacccttcaattggaaaacctcggttccgattgaccaattctaaaaatagatttcctatcccaatttggaacttacaggtttgaaattagaaaTT---CCAA-TTGGAATA--ACT---AA-A---TT-T--------TCA-AT---------T------GA--T-----AAAAT-GGA--GTTTCC-AACT-G-G-A-A-A-GCATG------T-G-T-TT--T-------agcatatatttttggggtctttagattataattgtgacataaatcggcaatttataatgcttttggttacttttttgtgatcgcacagtcgtactcttcaaactgcgatactttgtcaataaaaataacgaaagataaaaaatatttttggaataaagagtttttccagaaattcactgtgttgtg
gi|28 : taaactAA-TTGGAA-----------------TT-T--------CCA-ACGGGAAAGCTTTG----AA--A-----AAAAA-G-A--GTTTCC-AG-T-A-GTA-A-A-ACATG------C-A-T-TT--T-------TG--GGGTC----TTTAGATTACAATTGTAACTTAAAT--------TATA-AT----TTAGATA-C--G-TTTT-TGTGATCGCATAATCATACTCTTA-AAACTGCTACACATTGTCAATTAT-AAAA-GTA-------A---TGCA--AG----AT-----A---------------------TT----------------------TTTT--TT---TGAGAAATGCACTGTTTT
gi|22 : tTTTCT-AG-T-G-A-G-G-A-GCATGCGTTTTT-A-T-TT--T-------GG-----TC----TTTAAATTACAATTATGAGCTAAATCGGGAACATATG-ATGCGTTTGGTTA-C--C-ATTT-TGTTGTCGTATAGTCGTATCTTTA-AAACTGCGGCATGTTGTCT---AT-AAAA-ATA-------A---CGAA--AGATTAAT-----AA----A--C-AA----------TTTTGG-AAA-AAAA--A------TCT--TT---CCAGAAAATCACTGTTTTATaatt
gi|29 : acataaagcgtggattttttcgtagtacgtgagaatctagtgtgacaccgataccaaatggaactctcaaactggagagtcgtgattcaatt-AG-T-G-GGA-A-A-GCATG------C-AAT-TT--T-------GG--TG-TC----TTTAGATTACAACTGT---ACAAATCGGTAACTTATA-ATGCGTTTGGTTA-C--CGTTTT-TGTGATCGCACAGTTGTACTCTTA-AAACTGCG--ACTGTGTAA---AA-AAAA-ATA-------A---CTAA--AG----
gi|30 : tttatttaaataataCATG------C-A-T-TTATT-------GG-----TA----TTTAGATTACAATT--------------------ATA-ATGCGTTTGGTTAAC--T-TTTT-TGTGATCGCTTATTCGTACTCTTA-AAACTGCGGCACTTTGTAA---AT-AAAA-AT-------------GAT--AG----AT-----AA----A--A-TGTTTTGTTTATTTTTTA-AAT-AAAG---------TTT--TT---CCGGAAATTCACTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttattacttactt
gi|16 : AGATTATAATTGTGATTTGAATCGGCAACTCATA-ATGCTTTTGGTTA-C--C-TTTT--GTGATCGCACAGTCGTACTTTTC-AAACTGCTATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG----AT-----AA----AATA-AA--------GGTTTTTG-AAA-AAAG--AGTGTTTTTT--TT---CCAAAAATTCACTGTGTTGTGgctgg
gi|36 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaacccttcaaatggaaaacctcggttccaattgaccaattctaaaaatagatttccgattccaatttggaatttacaggtttataG-AAA-AACA--AG----TTTTTTTT---CCAGAAATGCACTGTGTTGTGtt
gi|38 : --AA----TTTT--AT---CCAGAAATTCACTGTGTTGTGtttattctcaaagtc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): ATTAAATAACTTTTTTTCTTAATTTGAAAATAAAATACTAGCAAAATTCTGCAATCAATTGCTACAATTGTAAAATTGGAACCATTTTTAACCCGGTTAATTACCAATTGGCGAAATTGGGTCTCGACCTCAAAATCATTCTAATTACAATTGTGAACTTATCAATCTGTTTGGTAACAATTTCGTGATTCTATAATCGAACTTGTCAGATTGAGACATATAACCAATCGAAATACTAGTACGTCAAAATGAAAAAAATATATATTTCTAGAGA
Alignments
lowQualScore : 222222222222222222222222222222 22222 111 2222222222222222222222222222222222222 1111111111
lowQualScore : 2 5555 2 1 4444 1 22 777777777 22 44444 444444 22 3 666666666 55555555 444444 888888888888888888888888888888 1 11111 66 3 33 4 1 666666666 1 1 111 1 8 1 1 1 444444 11 5 11 1 1 33 2 1 1 222 1 1 4444444 222 22 0000000000000000000000000000000000000 1 8888888888 44 333 1
lowQualScore : . .... . . .... . .. ......... .. ..... ...... .. . ......... ........ ...... .............................. . ..... .. . .. . . ......... . . ... . . . . . ...... .. . .. . . .. . . . ... . . ....... ... .. ..................................... . .......... .. ... .
lowQualScore : 5 3333 5 7 5555 6 55 333333333 44 33333 888888 22 2 444444444 88888888 444444 555555555555555555555555555555 0 44444 55 0 55 8 5 222222222 5 5 888 4 6 4 4 4 000000 99 2 99 4 4 88 8 4 4 555 4 4 6666666 555 00 3333333333333333333333333333333333333 7 8888888888 11 222 8
consensus : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAATTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGC------ATTT--TNGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
Reference ( family-1450 ) : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATCTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATNAGAAAATTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGC------ATTT--TGGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|1 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCGATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCTA---------TCC--------CAAT------TTGG--------------AACTTACAGGTTTGAAATTAGAAA-TTCCAA--CTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-TTG-G-A-A-A-GCATAT------ATTT--TTGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--T-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAT-------AT--TTTTGG-AAT-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|10 : CATAAAGCGTGAACTTTC-CGTA----GT-GCATGTGAAAATAACCTGACACCGACACTTTCCAATTAAATAACACCGGTAT----CAATATT----------------AAAACCTCTGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTA--------CAAT------TTGG--------------AA--------------ATTAGAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAA-T-G-T-A-A---GCATGG------ATTT--TGGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGGTTA-T--T-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTTCGATATTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAAAA-AA----A--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTT
gi|11 : cAAGCGTGGACTTTC-CGT-----GTAGCGTGTTAATATGACGTGAAACCGACACTTTCAAATCAAATAACACCGATAT----CAATAGTGGAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN---------NN--N-----NN------NNNNNNNN--NNNNN-NNNN---------NNN--------NNNN------NNNN--------------NN--------------NNNNNNNNNNNNNNN--NNNNNN-N--TT-ACCTTTCCA-AC---------TTGGACGAAAC-G-AATTTCCAGAG-G-G-A-A-A-GCATTC------ATTT--TGGGTTTTTTT--AGATTAAAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAACCGTACTCATC-AAA-TGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGGA--AGATTTATGAA----A--A-AA--------
gi|12 : CTTTCCAATTAAATAACACCGATATGGATCAATATTAGAACCTTCCAATTGGAAAACCTTGATTCCCATTG--GCC---------AA--T-----TC------TCAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-AAATTCCAA--TTAGAA-A--TGTATCCTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGT------ATTT--TGGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAAATTATA-ACGTTTTTCGTTA-C--C-TTTT-TGTGATCGCACCGCCATACTCTTC-AAACTGTGATACTTTGTCA---AT-GAAG-ATA-------A---CGAA--AGAT-----AA----A--A-AAAAAC----GT--TTTTGG-AAA-AAA---AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGactattcactgtatt
gi|13 : TTCCAGTTAAAAAACATCGATAC----CAAT--TAGAACCCTCCAATTGGAAAACCTCAGTTCCTATTG--GCCTTTTCTAAAAA--TAGATCTCCTATTATAAAAATA--AATTTTCCGA---------TTC--------CAAT------TTGGTCATTACAGGTTGGAA--------------ATTAGAAA-TTCCGA--TTGGAA-A--TTAAAATTTCTA-AC---------TTGGACAAGAC-G-ATTTTTCAG-C-G-GGA-A-A-CCATGC------GTTT--TTGGGGTCTTT--ACATTATAATTGTGACATAAATCGACAATTTATA-ATGTTTTTGAATA-C--C-TTTT-TGTGATCGCCAAGTCGTACTCTTC-AAATTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG-------------------A--------GT--TTTT-------------------------------CAAAACATTCATTGTGTTGTGtt
gi|14 : CACTTTCCAATTAAATAACACCGATTT----CAATATTGGAACACTCCAATTTGAAA------------ATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA-------CAGG--TTGGAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAGTT-G-G-C-A-A-GCATGC------ATAT--TTGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACATTGTCA---AT-AAAA-ATA-------G---CGAA--A-AT--------------A-GA--------GT--TTTCCA-AAA-AAt
gi|15 : catcaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCGCATTG--GTC---------AA--T-----TC------TTAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-ATATTCCAA--TTGGAA-A--ATTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTTCAG-TGG-G-A-A-A-GCATGC------ATTT--TGGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAATTTATG-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAC---AA----A--A-AA--------TT--TTTTGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGttcactgt
gi|16 : CACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAAATGGAAAACCTCGGTTCCAATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------t
gi|16 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--AGATTATAATTGTGATTTGAATCGGCAACTCATA-ATGCTTTTGGTTA-C--C-TTTT--GTGATCGCACAGTCGTACTTTTC-AAACTGCTATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----AATA-AA--------GG--TTTTTG-AAA-AAAG--AGTGTTTTTT--TT---CCAAAA-ATTCACTGTGTTGTGtttacaggtttataagattataattgtgatttgaatcggcaactcataatgcttttggttaccttttgtgatcgcacagtcgtacttttcaaactgctatactttgtcaataaaaataacgaaagataaaataaaggtttttgaaaaaagagtgttttttttccaaaaattcactgtgttgtgtt
gi|17 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaacccttcaaatggaaaacctcggttccaattgaccaattctaaaaatagatttccgattccaatttggaatttacaggtttataTTCAATTGAATAACACAGATAT----CAATATTGCAACCCTCCAATTGGAAAACATCGGTTTCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTATAAT-TTCCCA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACAAAAC-G-ACTTTCCAG-T-G-GGA-A-A-GCATGC------ATTT--TGTTTGTTTTTTTAAATTATAATTATGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTT-AACCTGCGATACTTTGTTA---AT-AAGA-ATA-------A---CG----------------------A-AA--------AT--T----------AAAG--A------TTT--TC---CCATGA-ATTCACTGTGTTGTGtt
gi|18 : ATTG--GAC---------TA--T-----TC------TAAAAATA--TATTT-CCGA---------TTC--------CAAT------TTAG--------------AA--------------ATGAG-AAATTCCAT--TTGGAA-A--TTTGACTTTCCA-GC---------TTGGTTAAAAT-G-ATTTTCCAGTT-A-G-A-A-A-GCATGC------ATTT--TTGGGGTCTTT--AGATTATAATTGTAACATAAATCGGCAATCTATA-ATGCTTTTCATAA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGTGACACTCTGTCA---ATAAAAA-AAA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--t
gi|19 : atataacaagatattatttcaataattacgcttgcctaatcaaatgtttcaattAAA-AACACCGATAT----CAGT--TGGAACCCTCAAATTGGAAATACTCAGTTCCGAGAG--ACC---------AA--T-----TC------CAAAAATA--GATTT-CCGA---------TTCAAATTTGGCAATAACAGGTTGG--------------AA--------------ATGAG-AAATTCCAA--TTGGAA-A--TTTAACTTTCCA-GC---------TTGGACAAAAC-A-ACTTTTCAG-TGG-G-A-A-A-ACATGC------ATTT--TTGGGGTCTTT--ATATTATGATTATGACATAATTCGGCAATTTATA-ATGCTATTGATTA-C--C-TGTT-TGTG--------------CTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------AT--aagagttcacttgtgttgtgt
gi|2 : CACTCTCCAATTAAAAAACACCGATAT----CAAT--TGGAAGCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGGCAATTACAGGTTGGAA--------------ATTAGAAA-TTTTAA--TTGGAA-A--TATAACTTTCCA-GC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-----------ATGC------ATTT--TTGGGGTCTTT--AGATTATAATTGTGACACAAATCGGAAATTTATA-ATGCTTTTGATTA-C--C-TTTG-TGTGATCGCACAATCGTACTCTTC-AAACTACGATACTTTGGCT---AT-AAAA-ATA-------A---CGAA--AGATAA---AA----A--A-AA--------GT--TTTTGG-AAA-AAAT--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGcactgtgttgtgtttt
gi|20 : ccagaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--T-----TC------TAAAACTA--GATTT-CACA---------TTT--------CAAA------TTGG--------------AA--------------ATTA--------CAGG-CTGGAA-A--TTAGAATTTACAGAA---------TTG-ACAAATC-G-ATTTGACAG-TAG-G-A-A-A-GCATGC------GTTT--TGGTT-TCTTT--AGATTAAGATTGTGCAATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--T-TTTTTTGTGATCGCACAGTCGTGTTCTTC-AAACTGCGACATATTGTCA---AT-AAAA-AAA-------A---CGAA--AGt
gi|21 : attggtttagAAAATACGAATTT-CCAAGTTGGAACGTTC--------CAAC------T--G--------------GA--------------ATTA--AAATTCCAAG-TTGGAA-AAGTTGA-ATTTCCA-AA---------T--GGCAAAATTA-AGTTTCCAAAT-T-G-A-A-A-ACATGT------GTTT--TG-GGGTATTT--TGGGTACAATTATG---------GATAATTTG-A-------TTGGTTA-C--C-TTTC-CGTGATTCCATTAACGTACTTGTC-AGATTGAGACATTTTGCCA---AT-CAAA-ATA-------ATTTCAAATTAAAA-----AA----A--ACAA--------AT--CT-----AGA-AAAGCTAT----TTTT--TT-------AA-ATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttatcaattaaacttcgaatgttgatgttatctttcatttt
gi|22 : taattaaatactttttatttccaactttcaactttccaagttCATAAAGCGTGGATTTTTTCGTA----GT-ACGTGAGAATCTAGTGTGACACCGATACgttttctgtt
gi|22 : aTTTCTAG-T-G-A-G-G-A-GCATGCGTTTTTATTT--TGG---TCTTT--AAATTACAATTATGAGCTAAATCGGGAACATATG-ATGCGTTTGGTTA-C--C-ATTT-TGTTGTCGTATAGTCGTATCTTTA-AAACTGCGGCATGTTGTCT---AT-AAAA-ATA-------A---CGAA--AGAT-----TA----A--T-AA--------ACAATTTTGG-AAA-AAAA--A------TCT--TT---CCAGAA-AATCACTGTTTTATcaaatggaactctcaaactggagagtcgtgattcaatttttctagtgaggagcatgcgtttttattttggtctttaaattacaattatgagctaaatcgggaacatatgatgcgtttggttaccattttgttgtcgtatagtcgtatctttaaaactgcggcatgttgtctataaaaataacgaaagattaataaacaattttggaaaaaaaatctttccagaaaatcactgttttat
gi|23 : acataaagcgtggattttttcgtagtacgtgagaatctagtgtgacaccgataccaaatggaactctcaaactggagagtcgtgattcaattCAATTATATAACACTGATAT----CAATATTGGAACCCTCCAATAGGAAAACCTCGGTTCACATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAG-AAATTCGAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTGGACAAAAC-G-ACTTT------------------------------TTG--TGGGGGTCTTT--AGATTATAATTTTGACATAAATCGGCAATTTAAA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-TAACTGCAATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG
gi|25 : aC------TAAAAATA--GACTT-TCGT---------TAC--------CAAT------TTG---------------AA--------------ACTA-------CCGACATTGGAATA--GTAAACGTTTCA-GC---------TTGGAAAAAAA-G-ATTTTCCAG-T-G-GGA-A-A-GCATGC------ATTT--TTGGTGTTTTT--AGATTACAATTGTGA------------------G-ATGTGTTTGGTTA-T--C-ATTT-TGTTATCGCAAAGTCGTACTCATA-AAACTGCAACGCTTTGTAA---AT-AAAA-A-A-------A---CGAA--AGAT-----AA----A--A-AA--------CT---------AA---------------TTT--TT---CAAGAA-ATTTACTGTGTTGT
gi|26 : AACCCTGCAATTGGAAAACCTCGGTTCCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA--------CAGG-TTGGAA-A--TTTATCTTTCTA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-G-A-ACGCATGC------ATTT--TTGGGGTCTTT--AGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATTGCACAGTCGTACTCTTC-AAACTGCGAT
gi|27 : ------TTGG--------------AA--------------ATTAGAAA-TTCAAA--TTGAAA-A--TTTA-----------------------------AC-G-ATTCTCCAG-T-G-GGA-A-A-GCAGTC------ATGT--TTGAGGTCTTT--AGATTGTAATTGTGACATAAATTGGCAGTTTTTTTATGCATTTGATTA-C--C-TATT-TGAAATTGCGTTATCGTTCTCTTA-AAATTGCGACACTTTGTCA---AT-AAAACATA-------A---CGAA--A---------A----A--A-AA--------G----------------AG--AG----TTTT--TT---TCAGAA-ATTCACCGTGTTGT
gi|28 : AA--TTGGAA----------TTTCCA-ACGGGAAAGCTTTGAAAAAAAA-G-AGTTTCCAG-T-A-GTA-A-A-ACATGC------ATTT--TTGGGGTCTTT--AGATTACAATTGTAACTTAAAT--------TATA-AT----TTAGATA-C--G-TTTT-TGTGATCGCATAATCATACTCTTA-AAACTGCTACACATTGTCAATTAT-AAAA-GTA-------A---TGCA--AGAT-----A---------------------T--T----------------------TTTT--TT---TGAGAA-ATGCACTGTTTTt
gi|29 : tAG-T-G-GGA-A-A-GCATGC------AATT--TTGGTGTCTTT--AGATTACAACTGT---ACAAATCGGTAACTTATA-ATGCGTTTGGTTA-C--CGTTTT-TGTGATCGCACAGTTGTACTCTTA-AAACTGCG--ACTGTGTAA---AA-AAAA-ATA-------A---CTAA--AGaatt
gi|3 : tttatttaaataataCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCTAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GGTTT-CCGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAG-AAATTCCAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTAGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGC------ATTT----ACGATCTTT--CGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTATTTA-C--C-GTTT-TGTGATTGCATAGTCGTACTCTTCAAAACTGTGGTACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGTT-----AAAAATA--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttattacttactt
gi|30 : cCATGC------ATTTATTGG---TATTT--AGATTACAATT--------------------ATA-ATGCGTTTGGTTAAC--T-TTTT-TGTGATCGCTTATTCGTACTCTTA-AAACTGCGGCACTTTGTAA---AT-AAAA-AT-------------GAT--AGAT-----AA----A--A-TGTTTTGTTTAT--TTTTTA-AAT-AAAG---------TTT--TT---CCGGAA-ATTCACTGTGCTGatt
gi|31 : AAACCTAGG--CCTATTGTTGCC---------AAATT-----TC------TAAATACA--AATTC-CAGA------------------------------TTGG--------------AA--------------GTGA-AAAGTGCC----TTGGAA-A--Tg
gi|32 : gcCATAAAGCTTAGGCTTTC-CATA----GT-GCGTGTGACTATAACGTGACACCAGCTCTTTCCAATTAAATAACACCGATagttaatttgaaac
gi|33 : cAGCGAGTACTTTC-TATATATAGC-GCGTGTGAATCTAACGTGACACCGG-ACTT---AATT
gi|34 : TTCCAA--TTGGAATA--ACTAAATTTTCA-AT---------T--GATAAAAT-GGAGTTTCCAACT-G-G-A-A-A-GCATGT------GTTT--Tgtattcagatccgataca
gi|35 : taaactCATAAGGCGTCGACTTTC-CGAA----GT-CCGTGTGAAATTAACATGGCATCGGCACTTT
gi|36 : cG-AAA-AACA--AG----TTTTTTTT---CCAGAA-ATGCACTGTGTTGTG
gi|37 : ATAAACCGTGCCCTTTC-CATT----TT-GCGTGTGAATCTAACGCAACACCGGtttattctcaaagtc
gi|38 : a--AA----TTTT--AT---CCAGAA-ATTCACTGTGTTGTGtt
gi|39 : acatC-TGTA----GT-GCGTGTGAATCTAACGTGACAACGttat
gi|4 : cacCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATAAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCTCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTTTCCAA---------TTC--------CTAT------TTGG--------------AA--------------ATGAGAAA-TTTTAT--TTGGAA-AA-TTTATCTTTCCA-AC---------TAGGACGAAAC-G-ACTTTCCAG-T-G-G-GTA-A-GCATGC------ATTG--TGGGGGACTTT--AGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TATGATCGAACAGTCGTACTCTTC-AAACTGCGATACTTTGCCA---AT-AAAA-ATG-------A---CAAA--AGATGGA--AA----A--A-AA--------GT--TTTGGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTCTGTTGTG
gi|5 : CATAAAGCGTGTACTTTC-CGTA----GT-GTGTTTGAATATAACGTGACACCGGCACTTTCCAATTAAATAACACCGATA-----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCACTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATAAGAAAATTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGT------ATTT--TGGGGATCTTT--AGATTATAATTGTGACATAAATCGGCAACATATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTTTTGTGt
gi|6 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCTAATTAAATAACACCGATAT----CAATATTGGAATCCTCCATTTGGAAGACCTCTGTTCCCATTG--GCC---------AA--T-----TT------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTTG--------------AA--------------ATTAG-AAATTCCAA--TTGGAA-A--TTTACCTTTCCA-AC---------ATGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGC------ATAT--TTGGGGTCTTT--AGATTATAATTGCGACATAAATCGG-AA-TTGTG-A--CTTTTGGTTA-C--C-TTCT-TGTGATCGCACAGTCATACTCTTT-AAACTGCAATACTTTGTCA---AT-AAAA-AT--------A---CGAA--AGATAAA--AA----A--A-AA--------GC--TTTTCG-AAA-AAAG--AG----TTTT--TTTCCCCAGAA-ATTCACTGTGTTG
gi|7 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATTAAATAACACCGATAT----CTATATTGGAACCCTCCAATTCGTAAATCTCGGTTCCAATGG--GCC---------AG--T-----TC------TAAAA-TA--GATTT-CCGA---------TAC--------CAAT------TTGG--------------AATTTACAGGTTGGAGATTAGAAA-TTCCAA--TTGGAA-A--TTTATCTTTCGA-AC---------TTGGACGAAAC-A-ACTTTCCAG-TTG-G-A-A-A-GCATGC------ATTT--TTGGGGTCTTT--AGATTATAATTGTGACATAAATTGGCAATTTATA-ATGCTTTTGATTA-C--CTTTTT-TGCGACCGCACAGTCGTTTTCTTC-AAACTGCGGTACTTTGCTT---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAAG------AT--TTTTGG-AAATTGAG--TG----TTTT--T
gi|8 : cCATAAAGCATAGGCTTTT-CGTA----GT-CCGTGTAAATTTAACGTGACACCGACA------AATTAAATAACAACGATAA----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCCATTT--GCC---------AA--T-----TC------TAAAAATA--GATT-----------------C--------CAAT------TTGG--------------AA--------------ATAA-AAAATTCCAA--TTGAAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-GAG-G-A-A-GCATGC------ATTC--T-TGCATCTTT--AGATTATAATTGTGACATAAATCGGCAATTTATA-ACGCTTTTGGTGA-CTTT-TTTT-TATGATCCAACTGTCGTATTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATCTTTCGTTA---TGAA--AGAT-----A-------------------------------AAA-AAAG--AG----TTTTC-TT---CCAGAA-ATTCACTGTGCTGTGc
gi|9 : cCATAAAGCGTGGACTTTC-CCTA----GT-GGTTGTCAATCTAACGTGACACCATCACTTTCAAATTAAATAACACCGATAT----CA--ATTGGAACCCTCCAATTGGAAAACCGTAGTTCCAATTG--GCA---------AA--T-----TC------TAAACATA--GATTT-CCTA---------TTC--------CAGT------TTGGCAATTACAGGTTTAAA--------------ATTAG-AAATTCCAA--TTGAAA-A--TTTAACTTTCAC-GC---------TTGGACAAAAC-G-TCTTTCCAA-T-G-G-A-ATA-ACATGC------ATTT--TTGGGGTCCTA--TGATTATATTTGTGCCATAAATT---------------CTTTTGATTA-CTTT-TTTT-TGTGATAGCACAGCCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-GAAA-ATT-------G---CGAA--AGAT-----AA---------------------------GA-AAA-CAA---------------TT---CCAGAA-ATTCACTGTGTTGTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ATTAAATAACTTTTTTTCTTAATTTGAAAATAAAATACTAGCAAAATTCTGCAATCAATTGCTACAATTGTAAAATTGGAACCATTTTTAACCCGGTTAATTACCAATTGGCGAAATTGGGTCTCGACCTCAAAATCATTCTAATTACAATTGTGAACTTATCAATCTGTTTGGTAACAATTTCGTGATTCTATAATCGAACTTGTCAGATTGAGACATATAACCAATCGAAATACTAGTACGTCAAAATGAAAAAAATATATATTTCTAGAGA
Alignments
lowQualScore : 333333333333333333333333333333 111111 1111 2222222222222222222222222222222222222 1111111111
lowQualScore : 2 5555 2 1 4444 1 0 22 777777777 22 44444 444444 22 1 3 666666666 55555555 444444 000000000000000000000000000000 888888 66 2 33 4 222 1 555555555 55555555 1 1 1 33333 1 3333 1 6 1 1 1 1 3 222 11 1 1 1 33 2 1 1 222 1 1 4444444 222 22 0000000000000000000000000000000000000 1 8888888888 44 333 1
lowQualScore : . .... . . .... . . .. ......... .. ..... ...... .. . . ......... ........ ...... .............................. ...... .. . .. . ... . ......... ........ . . . ..... . .... . . . . . . . ... .. . . . .. . . . ... . . ....... ... .. ..................................... . .......... .. ... .
lowQualScore : 5 3333 5 0 7777 9 9 66 333333333 44 33333 888888 22 6 2 444444444 88888888 444444 444444444444444444444444444444 333333 22 9 44 9 666 5 999999999 44444444 5 5 5 66666 4 0000 4 9 4 4 4 3 7 444 99 4 4 4 88 8 4 4 555 4 4 6666666 555 00 3333333333333333333333333333333333333 7 8888888888 11 222 8
consensus : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCT---TTCCA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AG-T--G-G-A-A-A-GCATGCATTT-TTGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
Reference ( family-1450 ) : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCT---TTCCA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AG-T--G-G-A-A-A-GCATGCATTT-TNGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|1 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCGATTG--ACC---------AA--T-----TC------TAAAAATA--G-ATTT-CCTA---------TCC--------CAAT------TTGG--------------AACTTACAGGTTTGAAATTAG-AAA-TTCCAA--CTGGAA-A--TTTATCT---TTCCA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AGTT--G-G-A-A-A-GCATATATTT-TTGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--T-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAT-------AT--TTTTGG-AAT-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|10 : CATAAAGCGTGAACTTTC-CGTA----GT-GCATGTGAAAATAACCTGACACCGACACTTTCCAATTAAATAACACCGGTAT----CAATATT----------------AAAACCTCTGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CTGA---------TTA--------CAAT------TTGG--------------AA--------------ATTAGAAA--TTCCAA--TTGGAA-A--TTTATCT---TTCCA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AA-T--G-T-A-A---GCATGGATTT-TGGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGGTTA-T--T-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTTCGATATTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAAAA-AA----A--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTT
gi|11 : cAAGCGTGGACTTTC-CGT-----GTAGCGTGTTAATATGACGTGAAACCGACACTTTCAAATCAAATAACACCGATAT----CAATAGTGGAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN---------NN--N-----NN------NNNNNNNN--N-NNNN-NNNN---------NNN--------NNNN------NNNN--------------NN--------------NNNNNNNNN-NNNNNN--NNNNNN-N--TT-ACCT---TTCCA-AC---------TTGGAC--------GAAA-C-G-AATT-----TCC-AGAG--G-G-A-A-A-GCATTCATTT-TGGG---TTTTTTT--A-GATTAAAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAACCGTACTCATC-AAA-TGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGGA--AGATTTATGAA----A--A-AA--------
gi|12 : CTTTCCAATTAAATAACACCGATATGGATCAATATTAGAACCTTCCAATTGGAAAACCTTGATTCCCATTG--GCC---------AA--T-----TC------TCAAAATA--G-ATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-AAA-TTCCAA--TTAGAA-A--TGTATCC---TTCCA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AG-TG-G-G-A-A-A-GCATGTATTT-TGGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAAATTATA-ACGTTTTTCGTTA-C--C-TTTT-TGTGATCGCACCGCCATACTCTTC-AAACTGTGATACTTTGTCA---AT-GAAG-ATA-------A---CGAA--AGAT-----AA----A--A-AAAAAC----GT--TTTTGG-AAA-AAA---AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGactattcactgtatt
gi|13 : TTCCAGTTAAAAAACATCGATAC----CAAT--TAGAACCCTCCAATTGGAAAACCTCAGTTCCTATTG--GCCTTTTCTAAAAA--TAGATCTCCTATTATAAAAATA--A-ATTTTCCGA---------TTC--------CAAT------TTGGTCATTACAGGTTGGAA--------------ATTAG-AAA-TTCCGA--TTGGAA-A--TTAAAAT---TTCTA-AC---------TTGGAC--------AAGA-C-G-ATTT-----TTC-AG-CG-G-G-A-A-A-CCATGCGTTT-TTGG---GGTCTTT--A-CATTATAATTGTGACATAAATCGACAATTTATA-ATGTTTTTGAATA-C--C-TTTT-TGTGATCGCCAAGTCGTACTCTTC-AAATTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG-------------------A--------GT--TTTT-------------------------------CAAAACATTCATTGTGTTGTGtt
gi|14 : CACTTTCCAATTAAATAACACCGATTT----CAATATTGGAACACTCCAATTTGAAA------------ATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA--------CAGG--TTGGAA-A--TTTATCT---TTCAA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AGTT--G-G-C-A-A-GCATGCATAT-TTGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACATTGTCA---AT-AAAA-ATA-------G---CGAA--A-AT--------------A-GA--------GT--TTTCCA-AAA-AAt
gi|15 : catcaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCGCATTG--GTC---------AA--T-----TC------TTAAAATA--G-ATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-ATA-TTCCAA--TTGGAA-A--ATTATCT---TTCCA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TTC-AG-TG-G-G-A-A-A-GCATGCATTT-TGGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAATTTATG-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAC---AA----A--A-AA--------TT--TTTTGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGttcactgt
gi|16 : CC---------AA--T-----T----------AAATA--ACA----CCGA---------TAT--------CAAT----------------------------------------ATTGGAACC-CTTCAA--ATGGAA-A-----ACCTCGGTTCCA-AT---------T--GACCAATTCTAAAAA-TAG-ATTTCCGATTCC-AA-TTTG-G-A-A-----------TT-TACA---GGTTTAT--AAGATTATAATTGTGATTTGAATCGGCAACTCATA-ATGCTTTTGGTTA-C--C-TTTT--GTGATCGCACAGTCGTACTTTTC-AAACTGCTATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----AATA-AA--------GG--TTTTTG-AAA-AAAG--AGTGTTTTTT--TT---CCAAAA-ATTCACTGTGTTGTGt
gi|17 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttTTCAATTGAATAACACAGATAT----CAATATTGCAACCCTCCAATTGGAAAACATCGGTTTCAATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTATAAT--TTCCCA--TTGGAA-A--TTTATCT---TTCCA-AC---------TTGGAC--------AAAA-C-G-ACTT-----TCC-AG-T--G-GGA-A-A-GCATGCATTT-TGTT---TGTTTTTTTA-AATTATAATTATGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTT-AACCTGCGATACTTTGTTA---AT-AAGA-ATA-------A---CG----------------------A-AA--------AT--T----------AAAG--A------TTT--TC---CCATGA-ATTCACTGTGTTGTGtt
gi|18 : ATTG--GAC---------TA--T-----TC------TAAAAATA--T-ATTT-CCGA---------TTC--------CAAT------TTAG--------------AA--------------ATGAG-AAA-TTCCAT--TTGGAA-A--TTTGACT---TTCCA-GC---------TTGGTT--------AAAA-T-G-ATTT-----TCC-AGTT--A-G-A-A-A-GCATGCATTT-TTGG---GGTCTTT--A-GATTATAATTGTAACATAAATCGGCAATCTATA-ATGCTTTTCATAA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGTGACACTCTGTCA---ATAAAAA-AAA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--t
gi|19 : atataacaagatattatttcaataattacgcttgcctaatcaaatgtttcaattAAA-AACACCGATAT----CAGT--TGGAACCCTCAAATTGGAAATACTCAGTTCCGAGAG--ACC---------AA--T-----TC------CAAAAATA--G-ATTT-CCGA---------TTCAAATTTGGCAATAACAGGTTGG--------------AA--------------ATGAG-AAA-TTCCAA--TTGGAA-A--TTTAACT---TTCCA-GC---------TTGGAC--------AAAA-C-A-ACTT-----TTC-AG-TG-G-G-A-A-A-ACATGCATTT-TTGG---GGTCTTT--A-TATTATGATTATGACATAATTCGGCAATTTATA-ATGCTATTGATTA-C--C-TGTT-TGTG--------------CTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------AT--aagagttcacttgtgttgtgt
gi|2 : CACTCTCCAATTAAAAAACACCGATAT----CAAT--TGGAAGCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CCGA---------TTC--------CAAT------TTGGCAATTACAGGTTGGAA--------------ATTAGAAA--TTTTAA--TTGGAA-A--TATAACT---TTCCA-GC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AG-T--G-----------ATGCATTT-TTGG---GGTCTTT--A-GATTATAATTGTGACACAAATCGGAAATTTATA-ATGCTTTTGATTA-C--C-TTTG-TGTGATCGCACAATCGTACTCTTC-AAACTACGATACTTTGGCT---AT-AAAA-ATA-------A---CGAA--AGATAA---AA----A--A-AA--------GT--TTTTGG-AAA-AAAT--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGcactgtgttgtgtttt
gi|20 : ccagaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--T-----TC------TAAAACTA--G-ATTT-CACA---------TTT--------CAAA------TTGG--------------AA--------------ATTA---------CAGG-CTGGAA-A--TTAGAAT---TTACAGAA---------TTG-AC--------AAAT-C-G-ATTT-----GAC-AG-TA-G-G-A-A-A-GCATGCGTTT-T-GG---TTTCTTT--A-GATTAAGATTGTGCAATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--T-TTTTTTGTGATCGCACAGTCGTGTTCTTC-AAACTGCGACATATTGTCA---AT-AAAA-AAA-------A---CGAA--AGt
gi|21 : attggtttagAAAATACGA-ATTT-CCAAGTTGGAACGTTC--------CAAC------T--G--------------GA--------------ATTA--AAA-TTCCAAG-TTGGAA-AAGTTGA-AT---TTCCA-AA---------T--GGC--------AAAATT-A-AGTT-----TCCAAA-T--T-G-A-A-A-ACATGTGTTT-T-GG---GGTATTT--T-GGGTACAATTATG---------GATAATTTG-A-------TTGGTTA-C--C-TTTC-CGTGATTCCATTAACGTACTTGTC-AGATTGAGACATTTTGCCA---AT-CAAA-ATA-------ATTTCAAATTAAAA-----AA----A--ACAA--------AT--CT-----AGA-AAAGCTAT----TTTT--TT-------AA-ATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttatcaattaaacttcgaatgttgatgttatctttcatttt
gi|22 : taattaaatactttttatttccaactttcaactttccaagttCATAAAGCGTGGATTTTTTCGTA----GT-ACGTGAGAATCTAGTGTGACACCGATACgttttctgtt
gi|22 : aTT-----TCT-AG-T--G-A-G-G-A-GCATGCGTTT-TTATTTTGGTCTTT--A-AATTACAATTATGAGCTAAATCGGGAACATATG-ATGCGTTTGGTTA-C--C-ATTT-TGTTGTCGTATAGTCGTATCTTTA-AAACTGCGGCATGTTGTCT---AT-AAAA-ATA-------A---CGAA--AGAT-----TA----A--T-AA--------ACAATTTTGG-AAA-AAAA--A------TCT--TT---CCAGAA-AATCACTGTTTTATcaaatggaactctcaaactggagagtcgtgattcaatttttctagtgaggagcatgcgtttttattttggtctttaaattacaattatgagctaaatcgggaacatatgatgcgtttggttaccattttgttgtcgtatagtcgtatctttaaaactgcggcatgttgtctataaaaataacgaaagattaataaacaattttggaaaaaaaatctttccagaaaatcactgttttat
gi|23 : acataaagcgtggattttttcgtagtacgtgagaatctagtgtgacaccgataccaaatggaactctcaaactggagagtcgtgattcaattCAATTATATAACACTGATAT----CAATATTGGAACCCTCCAATAGGAAAACCTCGGTTCACATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CTGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAGAAA--TTCGAA--TTGGAA-A--TTTATTT---TTCCA-AC---------TTGGAC--------AAAA-C-G-ACTT-----T--------------------------TTG-TGGG---GGTCTTT--A-GATTATAATTTTGACATAAATCGGCAATTTAAA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-TAACTGCAATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG
gi|25 : aC------TAAAAATA--G-ACTT-TCGT---------TAC--------CAAT------TTG---------------AA--------------ACTA--------CCGACATTGGAATA--GTAAACG---TTTCA-GC---------TTGGAA--------AAAA-A-G-ATTT-----TCC-AG-T--G-GGA-A-A-GCATGCATTT-TTGG---TGTTTTT--A-GATTACAATTGTGA------------------G-ATGTGTTTGGTTA-T--C-ATTT-TGTTATCGCAAAGTCGTACTCATA-AAACTGCAACGCTTTGTAA---AT-AAAA-A-A-------A---CGAA--AGAT-----AA----A--A-AA--------CT---------AA---------------TTT--TT---CAAGAA-ATTTACTGTGTTGT
gi|26 : AACCCTGCAATTGGAAAACCTCGGTTCCAATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA---------CAGG-TTGGAA-A--TTTATCT---TTCTA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AG-T--G-G-G-A-ACGCATGCATTT-TTGG---GGTCTTT--A-GATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATTGCACAGTCGTACTCTTC-AAACTGCGAT
gi|27 : ------TTGG--------------AA--------------ATTAGAAA--TTCAAA--TTGAAA-A--TTTA----------------------------------------A-C-G-ATTC-----TCC-AG-T--G-GGA-A-A-GCAGTCATGT-TTGA---GGTCTTT--A-GATTGTAATTGTGACATAAATTGGCAGTTTTTTTATGCATTTGATTA-C--C-TATT-TGAAATTGCGTTATCGTTCTCTTA-AAATTGCGACACTTTGTCA---AT-AAAACATA-------A---CGAA--A---------A----A--A-AA--------G----------------AG--AG----TTTT--TT---TCAGAA-ATTCACCGTGTTGT
gi|28 : AA--TTGGAA----------T---TTCCA-ACGGGAAAGCTTTGAAA--------AAAA-A-G-AGTT-----TCC-AG-T--A-GTA-A-A-ACATGCATTT-TTGG---GGTCTTT--A-GATTACAATTGTAACTTAAA--------TTATA-A----TTTAGATA-C--G-TTTT-TGTGATCGCATAATCATACTCTTA-AAACTGCTACACATTGTCAATTAT-AAAA-GTA-------A---TGCA--AGAT-----A---------------------T--T----------------------TTTT--TT---TGAGAA-ATGCACTGTTTTt
gi|29 : t-AG-T--G-GGA-A-A-GCATGCAATT-TTGG---TGTCTTT--A-GATTACAACTGT---ACAAATCGGTAACTTATA-ATGCGTTTGGTTA-C--CGTTTT-TGTGATCGCACAGTTGTACTCTTA-AAACTGCG--ACTGTGTAA---AA-AAAA-ATA-------A---CTAA--AGaatt
gi|3 : tttatttaaataataCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCTAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--G-GTTT-CCGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTATTT---TTCCA-AC---------TTAGAC--------GAAA-C-G-ACTT-----TCC-AG-TG-G-G-A-A-A-GCATGCATTT-AC-----GATCTTT--C-GATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTATTTA-C--C-GTTT-TGTGATTGCATAGTCGTACTCTTCAAAACTGTGGTACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGTT-----AAAAATA--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttattacttactt
gi|30 : cCATGCATTTATTGG-----TATTT--A-GATTACAATT--------------------ATA-ATGCGTTTGGTTAAC--T-TTTT-TGTGATCGCTTATTCGTACTCTTA-AAACTGCGGCACTTTGTAA---AT-AAAA-AT-------------GAT--AGAT-----AA----A--A-TGTTTTGTTTAT--TTTTTA-AAT-AAAG---------TTT--TT---CCGGAA-ATTCACTGTGCTGatt
gi|31 : AAACCTAGG--CCTATTGTTGCC---------AAATT-----TC------TAAATACA--A-ATTC-CAGA------------------------------TTGG--------------AA--------------GT--GAAAAGTGCC----TTGGAA-A--Tg
gi|32 : gcCATAAAGCTTAGGCTTTC-CATA----GT-GCGTGTGACTATAACGTGACACCAGCTCTTTCCAATTAAATAACACCGATagttaatttgaaac
gi|33 : cAGCGAGTACTTTC-TATATATAGC-GCGTGTGAATCTAACGTGACACCGG-ACTT---AATT
gi|34 : -TTCCAA--TTGGAATA--ACTAAAT---TTTCA-AT---------T--GAT--------AAAA-T-GGAGTT-----TCC-AACT--G-G-A-A-A-GCATGTGTTT-Tgtattcagatccgataca
gi|35 : taaactCATAAGGCGTCGACTTTC-CGAA----GT-CCGTGTGAAATTAACATGGCATCGGCACTTT
gi|36 : cG-AAA-AACA--AG----TTTTTTTT---CCAGAA-ATGCACTGTGTTGTG
gi|37 : ATAAACCGTGCCCTTTC-CATT----TT-GCGTGTGAATCTAACGCAACACCGGtttattctcaaagtc
gi|38 : a--AA----TTTT--AT---CCAGAA-ATTCACTGTGTTGTGtt
gi|39 : acatC-TGTA----GT-GCGTGTGAATCTAACGTGACAACGttat
gi|4 : cacCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATAAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCTCATTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTTTCCAA---------TTC--------CTAT------TTGG--------------AA--------------ATGAGAAA--TTTTAT--TTGGAA-AA-TTTATCT---TTCCA-AC---------TAGGAC--------GAAA-C-G-ACTT-----TCC-AG-T--G-G-GTA-A-GCATGCATTG-TGGG---GGACTTT--A-GATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TATGATCGAACAGTCGTACTCTTC-AAACTGCGATACTTTGCCA---AT-AAAA-ATG-------A---CAAA--AGATGGA--AA----A--A-AA--------GT--TTTGGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTCTGTTGTG
gi|5 : CATAAAGCGTGTACTTTC-CGTA----GT-GTGTTTGAATATAACGTGACACCGGCACTTTCCAATTAAATAACACCGATA-----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCACTG--GCC---------AA--T-----TC------TAAAAATA--G-ATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATAAGAAAA-TTCCAA--TTGGAA-A--TTTATCT---TTCCA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AG-T--G-G-A-A-A-GCATGTATTT-TGGG---GATCTTT--A-GATTATAATTGTGACATAAATCGGCAACATATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTTTTGTGt
gi|6 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCTAATTAAATAACACCGATAT----CAATATTGGAATCCTCCATTTGGAAGACCTCTGTTCCCATTG--GCC---------AA--T-----TT------TAAAAATA--G-ATTT-CTGA---------TTC--------CAAT------TTTG--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTACCT---TTCCA-AC---------ATGGAC--------GAAA-C-G-ACTT-----TCC-AG-TG-G-G-A-A-A-GCATGCATAT-TTGG---GGTCTTT--A-GATTATAATTGCGACATAAATCGG-AA-TTGTG-A--CTTTTGGTTA-C--C-TTCT-TGTGATCGCACAGTCATACTCTTT-AAACTGCAATACTTTGTCA---AT-AAAA-AT--------A---CGAA--AGATAAA--AA----A--A-AA--------GC--TTTTCG-AAA-AAAG--AG----TTTT--TTTCCCCAGAA-ATTCACTGTGTTG
gi|7 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATTAAATAACACCGATAT----CTATATTGGAACCCTCCAATTCGTAAATCTCGGTTCCAATGG--GCC---------AG--T-----TC------T-AAAATA--G-ATTT-CCGA---------TAC--------CAAT------TTGG--------------AATTTACAGGTTGGAGATTAG-AAA-TTCCAA--TTGGAA-A--TTTATCT---TTCGA-AC---------TTGGAC--------GAAA-C-A-ACTT-----TCC-AGTT--G-G-A-A-A-GCATGCATTT-TTGG---GGTCTTT--A-GATTATAATTGTGACATAAATTGGCAATTTATA-ATGCTTTTGATTA-C--CTTTTT-TGCGACCGCACAGTCGTTTTCTTC-AAACTGCGGTACTTTGCTT---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAAG------AT--TTTTGG-AAATTGAG--TG----TTTT--T
gi|8 : cCATAAAGCATAGGCTTTT-CGTA----GT-CCGTGTAAATTTAACGTGACACCGACA------AATTAAATAACAACGATAA----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCCATTT--GCC---------AA--T-----TC------TAAAAATA--G-ATT-----------------C--------CAAT------TTGG--------------AA--------------AT-AAAAAA-TTCCAA--TTGAAA-A--TTTATCT---TTCAA-AC---------TTGGAC--------GAAA-C-G-ACTT-----TCC-AG-T--GAG-G-A-A-GCATGCATTC-TT-G---CATCTTT--A-GATTATAATTGTGACATAAATCGGCAATTTATA-ACGCTTTTGGTGA-CTTT-TTTT-TATGATCCAACTGTCGTATTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATCTTTCGTTA---TGAA--AGAT-----A-------------------------------AAA-AAAG--AG----TTTTC-TT---CCAGAA-ATTCACTGTGCTGTGc
gi|9 : cCATAAAGCGTGGACTTTC-CCTA----GT-GGTTGTCAATCTAACGTGACACCATCACTTTCAAATTAAATAACACCGATAT----CAAT--TGGAACCCTCCAATTGGAAAACCGTAGTTCCAATTG--GCA---------AA--T-----TC------TAAACATA--G-ATTT-CCTA---------TTC--------CAGT------TTGGCAATTACAGGTTTAAA--------------ATTAG-AAA-TTCCAA--TTGAAA-A--TTTAACT---TTCAC-GC---------TTGGAC--------AAAA-C-G-TCTT-----TCC-AA-T--G-G-A-ATA-ACATGCATTT-TTGG---GGTCCTA--T-GATTATATTTGTGCCATAAATT---------------CTTTTGATTA-CTTT-TTTT-TGTGATAGCACAGCCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-GAAA-ATT-------G---CGAA--AGAT-----AA---------------------------GA-AAA-CAA---------------TT---CCAGAA-ATTCACTGTGTTGTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ATTAAATAACTTTTTTTCTTAATTTGAAAATAAAATACTAGCAAAATTCTGCAATCAATTGCTACAATTGTAAAATTGGAACCATTTTTAACCCGGTTAATTACCAATTGGCGAAATTGGGTCTCGACCTCAAAATCATTCTAATTACAATTGTGAACTTATCAATCTGTTTGGTAACAATTTCGTGATTCTATAATCGAACTTGTCAGATTGAGACATATAACCAATCGAAATACTAGTACGTCAAAATGAAAAAAATATATATTTCTAGAGA
Alignments
lowQualScore : 222222222222222222222222222222 111111 111 2222222222222222222222222222222222222 1111111111
lowQualScore : 2 5555 2 1 4444 1 1 22 777777777 22 44444 444444 22 3 666666666 55555555 444444 888888888888888888888888888888 999999 66 3 33 4 1 666666666 1 1 222 1 7 1 1 1 1 222 222 1 1 33 2 1 1 222 1 1 4444444 222 22 0000000000000000000000000000000000000 1 8888888888 44 333 1
lowQualScore : . .... . . .... . . .. ......... .. ..... ...... .. . ......... ........ ...... .............................. ...... .. . .. . . ......... . . ... . . . . . . ... ... . . .. . . . ... . . ....... ... .. ..................................... . .......... .. ... .
lowQualScore : 5 3333 5 0 5555 3 6 55 333333333 44 33333 888888 22 2 444444444 88888888 444444 555555555555555555555555555555 000000 55 0 55 8 5 222222222 5 5 444 4 1 4 4 4 4 444 555 4 4 88 8 4 4 555 4 4 6666666 555 00 3333333333333333333333333333333333333 7 8888888888 11 222 8
consensus : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
Reference ( family-1450 ) : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|1 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCGATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCTA---------TCC--------CAAT------TTGG--------------AACTTACAGGTTTGAAATTAG-AAA-TTCCAA--CTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAGTT-G-G-A-A-A-GCATATATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--T-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAT-------AT--TTTTGG-AAT-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|10 : CATAAAGCGTGAACTTTC-CGTA----GT-GCATGTGAAAATAACCTGACACCGACACTTTCCAATTAAATAACACCGGTAT----CAATATT----------------AAAACCTCTGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTA--------CAAT------TTGG--------------AA--------------ATTAGAAA--TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAA-T-G-T-A-A---GCATGGATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGGTTA-T--T-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTTCGATATTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAAAA-AA----A--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTT
gi|11 : cAAGCGTGGACTTTC-CGT-----GTAGCGTGTTAATATGACGTGAAACCGACACTTTCAAATCAAATAACACCGATAT----CAATAGTGGAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN---------NN--N-----NN------NNNNNNNN--NNNNN-NNNN---------NNN--------NNNN------NNNN--------------NN--------------NNNNNNNNN-NNNNNN--NNNNNN-N--TT-ACCTTTCCA-AC---------TTGGACGAAAC-G-AATTTCCAGAG-G-G-A-A-A-GCATTCATTT-T--GGG---TTTTTTTAGATTAAAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAACCGTACTCATC-AAA-TGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGGA--AGATTTATGAA----A--A-AA--------
gi|12 : CTTTCCAATTAAATAACACCGATATGGATCAATATTAGAACCTTCCAATTGGAAAACCTTGATTCCCATTG--GCC---------AA--T-----TC------TCAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-AAA-TTCCAA--TTAGAA-A--TGTATCCTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGTATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAAATTATA-ACGTTTTTCGTTA-C--C-TTTT-TGTGATCGCACCGCCATACTCTTC-AAACTGTGATACTTTGTCA---AT-GAAG-ATA-------A---CGAA--AGAT-----AA----A--A-AAAAAC----GT--TTTTGG-AAA-AAA---AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGactattcactgtatt
gi|13 : TTCCAGTTAAAAAACATCGATAC----CAAT--TAGAACCCTCCAATTGGAAAACCTCAGTTCCTATTG--GCCTTTTCTAAAAA--TAGATCTCCTATTATAAAAATA--AATTTTCCGA---------TTC--------CAAT------TTGGTCATTACAGGTTGGAA--------------ATTAG-AAA-TTCCGA--TTGGAA-A--TTAAAATTTCTA-AC---------TTGGACAAGAC-G-ATTTTTCAG-CGG-G-A-A-A-CCATGCGTTT-T--TGG---GGTCTTTACATTATAATTGTGACATAAATCGACAATTTATA-ATGTTTTTGAATA-C--C-TTTT-TGTGATCGCCAAGTCGTACTCTTC-AAATTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG-------------------A--------GT--TTTT-------------------------------CAAAACATTCATTGTGTTGTGtt
gi|14 : CACTTTCCAATTAAATAACACCGATTT----CAATATTGGAACACTCCAATTTGAAA------------ATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA--------CAGG--TTGGAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAGTT-G-G-C-A-A-GCATGCATAT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACATTGTCA---AT-AAAA-ATA-------G---CGAA--A-AT--------------A-GA--------GT--TTTCCA-AAA-AAt
gi|15 : catcaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCGCATTG--GTC---------AA--T-----TC------TTAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-ATA-TTCCAA--TTGGAA-A--ATTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTTCAG-TGG-G-A-A-A-GCATGCATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATG-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAC---AA----A--A-AA--------TT--TTTTGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGttcactgt
gi|16 : CACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAAATGGAAAACCTCGGTTCCAATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTAt
gi|16 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATTATAATTGTGATTTGAATCGGCAACTCATA-ATGCTTTTGGTTA-C--C-TTTT--GTGATCGCACAGTCGTACTTTTC-AAACTGCTATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----AATA-AA--------GG--TTTTTG-AAA-AAAG--AGTGTTTTTT--TT---CCAAAA-ATTCACTGTGTTGTGcaggtttataagattataattgtgatttgaatcggcaactcataatgcttttggttaccttttgtgatcgcacagtcgtacttttcaaactgctatactttgtcaataaaaataacgaaagataaaataaaggtttttgaaaaaagagtgttttttttccaaaaattcactgtgttgtgtt
gi|17 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaacccttcaaatggaaaacctcggttccaattgaccaattctaaaaatagatttccgattccaatttggaatttacaggtttataTTCAATTGAATAACACAGATAT----CAATATTGCAACCCTCCAATTGGAAAACATCGGTTTCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTATAAT--TTCCCA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACAAAAC-G-ACTTTCCAG-T-G-GGA-A-A-GCATGCATTT-TGTTTG---TTTTTTTAAATTATAATTATGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTT-AACCTGCGATACTTTGTTA---AT-AAGA-ATA-------A---CG----------------------A-AA--------AT--T----------AAAG--A------TTT--TC---CCATGA-ATTCACTGTGTTGTGtt
gi|18 : ATTG--GAC---------TA--T-----TC------TAAAAATA--TATTT-CCGA---------TTC--------CAAT------TTAG--------------AA--------------ATGAG-AAA-TTCCAT--TTGGAA-A--TTTGACTTTCCA-GC---------TTGGTTAAAAT-G-ATTTTCCAGTT-A-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTAACATAAATCGGCAATCTATA-ATGCTTTTCATAA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGTGACACTCTGTCA---ATAAAAA-AAA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--t
gi|19 : atataacaagatattatttcaataattacgcttgcctaatcaaatgtttcaattAAA-AACACCGATAT----CAGT--TGGAACCCTCAAATTGGAAATACTCAGTTCCGAGAG--ACC---------AA--T-----TC------CAAAAATA--GATTT-CCGA---------TTCAAATTTGGCAATAACAGGTTGG--------------AA--------------ATGAG-AAA-TTCCAA--TTGGAA-A--TTTAACTTTCCA-GC---------TTGGACAAAAC-A-ACTTTTCAG-TGG-G-A-A-A-ACATGCATTT-T--TGG---GGTCTTTATATTATGATTATGACATAATTCGGCAATTTATA-ATGCTATTGATTA-C--C-TGTT-TGTG--------------CTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------AT--aagagttcacttgtgttgtgt
gi|2 : CACTCTCCAATTAAAAAACACCGATAT----CAAT--TGGAAGCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGGCAATTACAGGTTGGAA--------------ATTAGAAA--TTTTAA--TTGGAA-A--TATAACTTTCCA-GC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-----------ATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACACAAATCGGAAATTTATA-ATGCTTTTGATTA-C--C-TTTG-TGTGATCGCACAATCGTACTCTTC-AAACTACGATACTTTGGCT---AT-AAAA-ATA-------A---CGAA--AGATAA---AA----A--A-AA--------GT--TTTTGG-AAA-AAAT--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGcactgtgttgtgtttt
gi|20 : ccagaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--T-----TC------TAAAACTA--GATTT-CACA---------TTT--------CAAA------TTGG--------------AA--------------ATTA---------CAGG-CTGGAA-A--TTAGAATTTACAGAA---------TTG-ACAAATC-G-ATTTGACAG-TAG-G-A-A-A-GCATGCGTTT-T---GG---TTTCTTTAGATTAAGATTGTGCAATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--T-TTTTTTGTGATCGCACAGTCGTGTTCTTC-AAACTGCGACATATTGTCA---AT-AAAA-AAA-------A---CGAA--AGt
gi|21 : attggtttagAAAATACGAATTT-CCAAGTTGGAACGTTC--------CAAC------T--G--------------GA--------------ATTA--AAA-TTCCAAG-TTGGAA-AAGTTGA-ATTTCCA-AA---------T--GGCAAAATTA-AGTTTCCAAAT-T-G-A-A-A-ACATGTGTTT-T---GG---GGTATTTTGGGTACAATTATG---------GATAATTTG-A-------TTGGTTA-C--C-TTTC-CGTGATTCCATTAACGTACTTGTC-AGATTGAGACATTTTGCCA---AT-CAAA-ATA-------ATTTCAAATTAAAA-----AA----A--ACAA--------AT--CT-----AGA-AAAGCTAT----TTTT--TT-------AA-ATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttatcaattaaacttcgaatgttgatgttatctttcatttt
gi|22 : taattaaatactttttatttccaactttcaactttccaagttCATAAAGCGTGGATTTTTTCGTA----GT-ACGTGAGAATCTAGTGTGACACCGATACgttttctgtt
gi|22 : aTTTCTAG-T-G-A-G-G-A-GCATGCGTTT-T--TATTTTGGTCTTTAAATTACAATTATGAGCTAAATCGGGAACATATG-ATGCGTTTGGTTA-C--C-ATTT-TGTTGTCGTATAGTCGTATCTTTA-AAACTGCGGCATGTTGTCT---AT-AAAA-ATA-------A---CGAA--AGAT-----TA----A--T-AA--------ACAATTTTGG-AAA-AAAA--A------TCT--TT---CCAGAA-AATCACTGTTTTATcaaatggaactctcaaactggagagtcgtgattcaatttttctagtgaggagcatgcgtttttattttggtctttaaattacaattatgagctaaatcgggaacatatgatgcgtttggttaccattttgttgtcgtatagtcgtatctttaaaactgcggcatgttgtctataaaaataacgaaagattaataaacaattttggaaaaaaaatctttccagaaaatcactgttttat
gi|23 : acataaagcgtggattttttcgtagtacgtgagaatctagtgtgacaccgataccaaatggaactctcaaactggagagtcgtgattcaattCAATTATATAACACTGATAT----CAATATTGGAACCCTCCAATAGGAAAACCTCGGTTCACATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAGAAA--TTCGAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTGGACAAAAC-G-ACTTTTT-G-T-G-G-----------------------G---GGTCTTTAGATTATAATTTTGACATAAATCGGCAATTTAAA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-TAACTGCAATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG
gi|25 : aC------TAAAAATA--GACTT-TCGT---------TAC--------CAAT------TTG---------------AA--------------ACTA--------CCGACATTGGAATA--GTAAACGTTTCA-GC---------TTGGAAAAAAA-G-ATTTTCCAG-T-G-GGA-A-A-GCATGCATTT-T--TGG---TGTTTTTAGATTACAATTGTGA------------------G-ATGTGTTTGGTTA-T--C-ATTT-TGTTATCGCAAAGTCGTACTCATA-AAACTGCAACGCTTTGTAA---AT-AAAA-A-A-------A---CGAA--AGAT-----AA----A--A-AA--------CT---------AA---------------TTT--TT---CAAGAA-ATTTACTGTGTTGT
gi|26 : AACCCTGCAATTGGAAAACCTCGGTTCCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA---------CAGG-TTGGAA-A--TTTATCTTTCTA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-G-A-ACGCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATTGCACAGTCGTACTCTTC-AAACTGCGAT
gi|27 : ------TTGG--------------AA--------------ATTAGAAA--TTCAAA--TTGAAA-A--TTTA-----------------------------AC-G-ATTCTCCAG-T-G-GGA-A-A-GCAGTCATGT-T--TGA---GGTCTTTAGATTGTAATTGTGACATAAATTGGCAGTTTTTTTATGCATTTGATTA-C--C-TATT-TGAAATTGCGTTATCGTTCTCTTA-AAATTGCGACACTTTGTCA---AT-AAAACATA-------A---CGAA--A---------A----A--A-AA--------G----------------AG--AG----TTTT--TT---TCAGAA-ATTCACCGTGTTGT
gi|28 : AA--TTGGAA----------TTTCCA-ACGGGAAAGCTTTGAAAAAAAA-G-AGTTTCCAG-T-A-GTA-A-A-ACATGCATTT-T--TGG---GGTCTTTAGATTACAATTGTAACTTAAA--------TTATA-A----TTTAGATA-C--G-TTTT-TGTGATCGCATAATCATACTCTTA-AAACTGCTACACATTGTCAATTAT-AAAA-GTA-------A---TGCA--AGAT-----A---------------------T--T----------------------TTTT--TT---TGAGAA-ATGCACTGTTTTt
gi|29 : tAG-T-G-GGA-A-A-GCATGCAATT-T--TGG---TGTCTTTAGATTACAACTGT---ACAAATCGGTAACTTATA-ATGCGTTTGGTTA-C--CGTTTT-TGTGATCGCACAGTTGTACTCTTA-AAACTGCG--ACTGTGTAA---AA-AAAA-ATA-------A---CTAA--AGaatt
gi|3 : tttatttaaataataCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCTAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GGTTT-CCGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTAGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGCA--T-T--TAC---GATCTTTCGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTATTTA-C--C-GTTT-TGTGATTGCATAGTCGTACTCTTCAAAACTGTGGTACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGTT-----AAAAATA--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttattacttactt
gi|30 : cCATGCATTTAT--TGG-----TATTTAGATTACAATT--------------------ATA-ATGCGTTTGGTTAAC--T-TTTT-TGTGATCGCTTATTCGTACTCTTA-AAACTGCGGCACTTTGTAA---AT-AAAA-AT-------------GAT--AGAT-----AA----A--A-TGTTTTGTTTAT--TTTTTA-AAT-AAAG---------TTT--TT---CCGGAA-ATTCACTGTGCTGatt
gi|31 : AAACCTAGG--CCTATTGTTGCC---------AAATT-----TC------TAAATACA--AATTC-CAGA------------------------------TTGG--------------AA--------------GT--GAAAAGTGCC----TTGGAA-A--Tg
gi|32 : gcCATAAAGCTTAGGCTTTC-CATA----GT-GCGTGTGACTATAACGTGACACCAGCTCTTTCCAATTAAATAACACCGATagttaatttgaaac
gi|33 : cAGCGAGTACTTTC-TATATATAGC-GCGTGTGAATCTAACGTGACACCGG-ACTT---AATT
gi|34 : -TTCCAA--TTGGAATA--ACTAAATTTTCA-AT---------T--GATAAAAT-GGAGTTTCCAACT-G-G-A-A-A-GCATGTGTTT-T--gtattcagatccgataca
gi|35 : taaactCATAAGGCGTCGACTTTC-CGAA----GT-CCGTGTGAAATTAACATGGCATCGGCACTTT
gi|36 : cG-AAA-AACA--AG----TTTTTTTT---CCAGAA-ATGCACTGTGTTGTG
gi|37 : ATAAACCGTGCCCTTTC-CATT----TT-GCGTGTGAATCTAACGCAACACCGGtttattctcaaagtc
gi|38 : a--AA----TTTT--AT---CCAGAA-ATTCACTGTGTTGTGtt
gi|39 : acatC-TGTA----GT-GCGTGTGAATCTAACGTGACAACGttat
gi|4 : cacCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATAAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCTCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTTTCCAA---------TTC--------CTAT------TTGG--------------AA--------------ATGAGAAA--TTTTAT--TTGGAA-AA-TTTATCTTTCCA-AC---------TAGGACGAAAC-G-ACTTTCCAG-T-G-G-GTA-A-GCATGCATTG-T--GGG---GGACTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TATGATCGAACAGTCGTACTCTTC-AAACTGCGATACTTTGCCA---AT-AAAA-ATG-------A---CAAA--AGATGGA--AA----A--A-AA--------GT--TTTGGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTCTGTTGTG
gi|5 : CATAAAGCGTGTACTTTC-CGTA----GT-GTGTTTGAATATAACGTGACACCGGCACTTTCCAATTAAATAACACCGATA-----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCACTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATAAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGTATTT-T--GGG---GATCTTTAGATTATAATTGTGACATAAATCGGCAACATATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTTTTGTGt
gi|6 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCTAATTAAATAACACCGATAT----CAATATTGGAATCCTCCATTTGGAAGACCTCTGTTCCCATTG--GCC---------AA--T-----TT------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTTG--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTACCTTTCCA-AC---------ATGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGCATAT-T--TGG---GGTCTTTAGATTATAATTGCGACATAAATCGG-AA-TTGTG-A--CTTTTGGTTA-C--C-TTCT-TGTGATCGCACAGTCATACTCTTT-AAACTGCAATACTTTGTCA---AT-AAAA-AT--------A---CGAA--AGATAAA--AA----A--A-AA--------GC--TTTTCG-AAA-AAAG--AG----TTTT--TTTCCCCAGAA-ATTCACTGTGTTG
gi|7 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATTAAATAACACCGATAT----CTATATTGGAACCCTCCAATTCGTAAATCTCGGTTCCAATGG--GCC---------AG--T-----TC------T-AAAATA--GATTT-CCGA---------TAC--------CAAT------TTGG--------------AATTTACAGGTTGGAGATTAG-AAA-TTCCAA--TTGGAA-A--TTTATCTTTCGA-AC---------TTGGACGAAAC-A-ACTTTCCAGTT-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATTGGCAATTTATA-ATGCTTTTGATTA-C--CTTTTT-TGCGACCGCACAGTCGTTTTCTTC-AAACTGCGGTACTTTGCTT---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAAG------AT--TTTTGG-AAATTGAG--TG----TTTT--T
gi|8 : cCATAAAGCATAGGCTTTT-CGTA----GT-CCGTGTAAATTTAACGTGACACCGACA------AATTAAATAACAACGATAA----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCCATTT--GCC---------AA--T-----TC------TAAAAATA--GATT-----------------C--------CAAT------TTGG--------------AA--------------AT-AAAAAA-TTCCAA--TTGAAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-GAG-G-A-A-GCATGCATTC-T--T-G---CATCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ACGCTTTTGGTGA-CTTT-TTTT-TATGATCCAACTGTCGTATTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATCTTTCGTTA---TGAA--AGAT-----A-------------------------------AAA-AAAG--AG----TTTTC-TT---CCAGAA-ATTCACTGTGCTGTGc
gi|9 : cCATAAAGCGTGGACTTTC-CCTA----GT-GGTTGTCAATCTAACGTGACACCATCACTTTCAAATTAAATAACACCGATAT----CAAT--TGGAACCCTCCAATTGGAAAACCGTAGTTCCAATTG--GCA---------AA--T-----TC------TAAACATA--GATTT-CCTA---------TTC--------CAGT------TTGGCAATTACAGGTTTAAA--------------ATTAG-AAA-TTCCAA--TTGAAA-A--TTTAACTTTCAC-GC---------TTGGACAAAAC-G-TCTTTCCAA-T-G-G-A-ATA-ACATGCATTT-T--TGG---GGTCCTATGATTATATTTGTGCCATAAATT---------------CTTTTGATTA-CTTT-TTTT-TGTGATAGCACAGCCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-GAAA-ATT-------G---CGAA--AGAT-----AA---------------------------GA-AAA-CAA---------------TT---CCAGAA-ATTCACTGTGTTGTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ATTAAATAACTTTTTTTCTTAATTTGAAAATAAAATACTAGCAAAATTCTGCAATCAATTGCTACAATTGTAAAATTGGAACCATTTTTAACCCGGTTAATTACCAATTGGCGAAATTGGGTCTCGACCTCAAAATCATTCTAATTACAATTGTGAACTTATCAATCTGTTTGGTAACAATTTCGTGATTCTATAATCGAACTTGTCAGATTGAGACATATAACCAATCGAAATACTAGTACGTCAAAATGAAAAAAATATATATTTCTAGAGA
Alignments
lowQualScore : 222222222222222222222222222222 111111 111 2222222222222222222222222222222222222 1111111111
lowQualScore : 2 5555 2 1 4444 1 1 22 777777777 22 44444 444444 22 3 666666666 55555555 444444 888888888888888888888888888888 999999 66 3 33 4 1 666666666 1 1 222 1 7 1 1 1 1 222 222 1 1 33 2 1 1 222 1 1 4444444 222 22 0000000000000000000000000000000000000 1 8888888888 44 333 1
lowQualScore : . .... . . .... . . .. ......... .. ..... ...... .. . ......... ........ ...... .............................. ...... .. . .. . . ......... . . ... . . . . . . ... ... . . .. . . . ... . . ....... ... .. ..................................... . .......... .. ... .
lowQualScore : 5 3333 5 0 5555 3 6 55 333333333 44 33333 888888 22 2 444444444 88888888 444444 555555555555555555555555555555 000000 55 0 55 8 5 222222222 5 5 444 4 1 4 4 4 4 444 555 4 4 88 8 4 4 555 4 4 6666666 555 00 3333333333333333333333333333333333333 7 8888888888 11 222 8
consensus : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
Reference ( family-1450 ) : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|1 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCGATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCTA---------TCC--------CAAT------TTGG--------------AACTTACAGGTTTGAAATTAG-AAA-TTCCAA--CTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAGTT-G-G-A-A-A-GCATATATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--T-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAT-------AT--TTTTGG-AAT-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|10 : CATAAAGCGTGAACTTTC-CGTA----GT-GCATGTGAAAATAACCTGACACCGACACTTTCCAATTAAATAACACCGGTAT----CAATATT----------------AAAACCTCTGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTA--------CAAT------TTGG--------------AA--------------ATTAGAAA--TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAA-T-G-T-A-A---GCATGGATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGGTTA-T--T-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTTCGATATTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAAAA-AA----A--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTT
gi|11 : cAAGCGTGGACTTTC-CGT-----GTAGCGTGTTAATATGACGTGAAACCGACACTTTCAAATCAAATAACACCGATAT----CAATAGTGGAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN---------NN--N-----NN------NNNNNNNN--NNNNN-NNNN---------NNN--------NNNN------NNNN--------------NN--------------NNNNNNNNN-NNNNNN--NNNNNN-N--TT-ACCTTTCCA-AC---------TTGGACGAAAC-G-AATTTCCAGAG-G-G-A-A-A-GCATTCATTT-T--GGG---TTTTTTTAGATTAAAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAACCGTACTCATC-AAA-TGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGGA--AGATTTATGAA----A--A-AA--------
gi|12 : CTTTCCAATTAAATAACACCGATATGGATCAATATTAGAACCTTCCAATTGGAAAACCTTGATTCCCATTG--GCC---------AA--T-----TC------TCAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-AAA-TTCCAA--TTAGAA-A--TGTATCCTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGTATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAAATTATA-ACGTTTTTCGTTA-C--C-TTTT-TGTGATCGCACCGCCATACTCTTC-AAACTGTGATACTTTGTCA---AT-GAAG-ATA-------A---CGAA--AGAT-----AA----A--A-AAAAAC----GT--TTTTGG-AAA-AAA---AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGactattcactgtatt
gi|13 : TTCCAGTTAAAAAACATCGATAC----CAAT--TAGAACCCTCCAATTGGAAAACCTCAGTTCCTATTG--GCCTTTTCTAAAAA--TAGATCTCCTATTATAAAAATA--AATTTTCCGA---------TTC--------CAAT------TTGGTCATTACAGGTTGGAA--------------ATTAG-AAA-TTCCGA--TTGGAA-A--TTAAAATTTCTA-AC---------TTGGACAAGAC-G-ATTTTTCAG-CGG-G-A-A-A-CCATGCGTTT-T--TGG---GGTCTTTACATTATAATTGTGACATAAATCGACAATTTATA-ATGTTTTTGAATA-C--C-TTTT-TGTGATCGCCAAGTCGTACTCTTC-AAATTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG-------------------A--------GT--TTTT-------------------------------CAAAACATTCATTGTGTTGTGtt
gi|14 : CACTTTCCAATTAAATAACACCGATTT----CAATATTGGAACACTCCAATTTGAAA------------ATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA--------CAGG--TTGGAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAGTT-G-G-C-A-A-GCATGCATAT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACATTGTCA---AT-AAAA-ATA-------G---CGAA--A-AT--------------A-GA--------GT--TTTCCA-AAA-AAt
gi|15 : catcaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCGCATTG--GTC---------AA--T-----TC------TTAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-ATA-TTCCAA--TTGGAA-A--ATTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTTCAG-TGG-G-A-A-A-GCATGCATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATG-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAC---AA----A--A-AA--------TT--TTTTGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGttcactgt
gi|16 : CACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAAATGGAAAACCTCGGTTCCAATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTAt
gi|16 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATTATAATTGTGATTTGAATCGGCAACTCATA-ATGCTTTTGGTTA-C--C-TTTT--GTGATCGCACAGTCGTACTTTTC-AAACTGCTATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----AATA-AA--------GG--TTTTTG-AAA-AAAG--AGTGTTTTTT--TT---CCAAAA-ATTCACTGTGTTGTGcaggtttataagattataattgtgatttgaatcggcaactcataatgcttttggttaccttttgtgatcgcacagtcgtacttttcaaactgctatactttgtcaataaaaataacgaaagataaaataaaggtttttgaaaaaagagtgttttttttccaaaaattcactgtgttgtgtt
gi|17 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaacccttcaaatggaaaacctcggttccaattgaccaattctaaaaatagatttccgattccaatttggaatttacaggtttataTTCAATTGAATAACACAGATAT----CAATATTGCAACCCTCCAATTGGAAAACATCGGTTTCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTATAAT--TTCCCA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACAAAAC-G-ACTTTCCAG-T-G-GGA-A-A-GCATGCATTT-TGTTTG---TTTTTTTAAATTATAATTATGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTT-AACCTGCGATACTTTGTTA---AT-AAGA-ATA-------A---CG----------------------A-AA--------AT--T----------AAAG--A------TTT--TC---CCATGA-ATTCACTGTGTTGTGtt
gi|18 : ATTG--GAC---------TA--T-----TC------TAAAAATA--TATTT-CCGA---------TTC--------CAAT------TTAG--------------AA--------------ATGAG-AAA-TTCCAT--TTGGAA-A--TTTGACTTTCCA-GC---------TTGGTTAAAAT-G-ATTTTCCAGTT-A-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTAACATAAATCGGCAATCTATA-ATGCTTTTCATAA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGTGACACTCTGTCA---ATAAAAA-AAA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--t
gi|19 : atataacaagatattatttcaataattacgcttgcctaatcaaatgtttcaattAAA-AACACCGATAT----CAGT--TGGAACCCTCAAATTGGAAATACTCAGTTCCGAGAG--ACC---------AA--T-----TC------CAAAAATA--GATTT-CCGA---------TTCAAATTTGGCAATAACAGGTTGG--------------AA--------------ATGAG-AAA-TTCCAA--TTGGAA-A--TTTAACTTTCCA-GC---------TTGGACAAAAC-A-ACTTTTCAG-TGG-G-A-A-A-ACATGCATTT-T--TGG---GGTCTTTATATTATGATTATGACATAATTCGGCAATTTATA-ATGCTATTGATTA-C--C-TGTT-TGTG--------------CTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------AT--aagagttcacttgtgttgtgt
gi|2 : CACTCTCCAATTAAAAAACACCGATAT----CAAT--TGGAAGCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGGCAATTACAGGTTGGAA--------------ATTAGAAA--TTTTAA--TTGGAA-A--TATAACTTTCCA-GC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-----------ATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACACAAATCGGAAATTTATA-ATGCTTTTGATTA-C--C-TTTG-TGTGATCGCACAATCGTACTCTTC-AAACTACGATACTTTGGCT---AT-AAAA-ATA-------A---CGAA--AGATAA---AA----A--A-AA--------GT--TTTTGG-AAA-AAAT--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGcactgtgttgtgtttt
gi|20 : ccagaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--T-----TC------TAAAACTA--GATTT-CACA---------TTT--------CAAA------TTGG--------------AA--------------ATTA---------CAGG-CTGGAA-A--TTAGAATTTACAGAA---------TTG-ACAAATC-G-ATTTGACAG-TAG-G-A-A-A-GCATGCGTTT-T---GG---TTTCTTTAGATTAAGATTGTGCAATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--T-TTTTTTGTGATCGCACAGTCGTGTTCTTC-AAACTGCGACATATTGTCA---AT-AAAA-AAA-------A---CGAA--AGt
gi|21 : attggtttagAAAATACGAATTT-CCAAGTTGGAACGTTC--------CAAC------T--G--------------GA--------------ATTA--AAA-TTCCAAG-TTGGAA-AAGTTGA-ATTTCCA-AA---------T--GGCAAAATTA-AGTTTCCAAAT-T-G-A-A-A-ACATGTGTTT-T---GG---GGTATTTTGGGTACAATTATG---------GATAATTTG-A-------TTGGTTA-C--C-TTTC-CGTGATTCCATTAACGTACTTGTC-AGATTGAGACATTTTGCCA---AT-CAAA-ATA-------ATTTCAAATTAAAA-----AA----A--ACAA--------AT--CT-----AGA-AAAGCTAT----TTTT--TT-------AA-ATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttatcaattaaacttcgaatgttgatgttatctttcatttt
gi|22 : taattaaatactttttatttccaactttcaactttccaagttCATAAAGCGTGGATTTTTTCGTA----GT-ACGTGAGAATCTAGTGTGACACCGATACgttttctgtt
gi|22 : aTTTCTAG-T-G-A-G-G-A-GCATGCGTTT-T--TATTTTGGTCTTTAAATTACAATTATGAGCTAAATCGGGAACATATG-ATGCGTTTGGTTA-C--C-ATTT-TGTTGTCGTATAGTCGTATCTTTA-AAACTGCGGCATGTTGTCT---AT-AAAA-ATA-------A---CGAA--AGAT-----TA----A--T-AA--------ACAATTTTGG-AAA-AAAA--A------TCT--TT---CCAGAA-AATCACTGTTTTATcaaatggaactctcaaactggagagtcgtgattcaatttttctagtgaggagcatgcgtttttattttggtctttaaattacaattatgagctaaatcgggaacatatgatgcgtttggttaccattttgttgtcgtatagtcgtatctttaaaactgcggcatgttgtctataaaaataacgaaagattaataaacaattttggaaaaaaaatctttccagaaaatcactgttttat
gi|23 : acataaagcgtggattttttcgtagtacgtgagaatctagtgtgacaccgataccaaatggaactctcaaactggagagtcgtgattcaattCAATTATATAACACTGATAT----CAATATTGGAACCCTCCAATAGGAAAACCTCGGTTCACATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAGAAA--TTCGAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTGGACAAAAC-G-ACTTTTT-G-T-G-G-----------------------G---GGTCTTTAGATTATAATTTTGACATAAATCGGCAATTTAAA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-TAACTGCAATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG
gi|25 : aC------TAAAAATA--GACTT-TCGT---------TAC--------CAAT------TTG---------------AA--------------ACTA--------CCGACATTGGAATA--GTAAACGTTTCA-GC---------TTGGAAAAAAA-G-ATTTTCCAG-T-G-GGA-A-A-GCATGCATTT-T--TGG---TGTTTTTAGATTACAATTGTGA------------------G-ATGTGTTTGGTTA-T--C-ATTT-TGTTATCGCAAAGTCGTACTCATA-AAACTGCAACGCTTTGTAA---AT-AAAA-A-A-------A---CGAA--AGAT-----AA----A--A-AA--------CT---------AA---------------TTT--TT---CAAGAA-ATTTACTGTGTTGT
gi|26 : AACCCTGCAATTGGAAAACCTCGGTTCCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA---------CAGG-TTGGAA-A--TTTATCTTTCTA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-G-A-ACGCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATTGCACAGTCGTACTCTTC-AAACTGCGAT
gi|27 : ------TTGG--------------AA--------------ATTAGAAA--TTCAAA--TTGAAA-A--TTTA-----------------------------AC-G-ATTCTCCAG-T-G-GGA-A-A-GCAGTCATGT-T--TGA---GGTCTTTAGATTGTAATTGTGACATAAATTGGCAGTTTTTTTATGCATTTGATTA-C--C-TATT-TGAAATTGCGTTATCGTTCTCTTA-AAATTGCGACACTTTGTCA---AT-AAAACATA-------A---CGAA--A---------A----A--A-AA--------G----------------AG--AG----TTTT--TT---TCAGAA-ATTCACCGTGTTGT
gi|28 : AA--TTGGAA----------TTTCCA-ACGGGAAAGCTTTGAAAAAAAA-G-AGTTTCCAG-T-A-GTA-A-A-ACATGCATTT-T--TGG---GGTCTTTAGATTACAATTGTAACTTAAA--------TTATA-A----TTTAGATA-C--G-TTTT-TGTGATCGCATAATCATACTCTTA-AAACTGCTACACATTGTCAATTAT-AAAA-GTA-------A---TGCA--AGAT-----A---------------------T--T----------------------TTTT--TT---TGAGAA-ATGCACTGTTTTt
gi|29 : tAG-T-G-GGA-A-A-GCATGCAATT-T--TGG---TGTCTTTAGATTACAACTGT---ACAAATCGGTAACTTATA-ATGCGTTTGGTTA-C--CGTTTT-TGTGATCGCACAGTTGTACTCTTA-AAACTGCG--ACTGTGTAA---AA-AAAA-ATA-------A---CTAA--AGaatt
gi|3 : tttatttaaataataCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCTAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GGTTT-CCGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTAGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGCA--T-T--TAC---GATCTTTCGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTATTTA-C--C-GTTT-TGTGATTGCATAGTCGTACTCTTCAAAACTGTGGTACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGTT-----AAAAATA--A-AA--------GT--TTTTGGAAAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttattacttactt
gi|30 : cCATGCATTTAT--TGG-----TATTTAGATTACAATT--------------------ATA-ATGCGTTTGGTTAAC--T-TTTT-TGTGATCGCTTATTCGTACTCTTA-AAACTGCGGCACTTTGTAA---AT-AAAA-AT-------------GAT--AGAT-----AA----A--A-TGTTTTGTTTAT--TTTTTA-AAT-AAAG---------TTT--TT---CCGGAA-ATTCACTGTGCTGatt
gi|31 : AAACCTAGG--CCTATTGTTGCC---------AAATT-----TC------TAAATACA--AATTC-CAGA------------------------------TTGG--------------AA--------------GT--GAAAAGTGCC----TTGGAA-A--Tg
gi|32 : gcCATAAAGCTTAGGCTTTC-CATA----GT-GCGTGTGACTATAACGTGACACCAGCTCTTTCCAATTAAATAACACCGATagttaatttgaaac
gi|33 : cAGCGAGTACTTTC-TATATATAGC-GCGTGTGAATCTAACGTGACACCGG-ACTT---AATT
gi|34 : -TTCCAA--TTGGAATA--ACTAAATTTTCA-AT---------T--GATAAAAT-GGAGTTTCCAACT-G-G-A-A-A-GCATGTGTTT-T--gtattcagatccgataca
gi|35 : taaactCATAAGGCGTCGACTTTC-CGAA----GT-CCGTGTGAAATTAACATGGCATCGGCACTTT
gi|36 : cG-AAA-AACA--AG----TTTTTTTT---CCAGAA-ATGCACTGTGTTGTG
gi|37 : ATAAACCGTGCCCTTTC-CATT----TT-GCGTGTGAATCTAACGCAACACCGGtttattctcaaagtc
gi|38 : a--AA----TTTT--AT---CCAGAA-ATTCACTGTGTTGTGtt
gi|39 : acatC-TGTA----GT-GCGTGTGAATCTAACGTGACAACGttat
gi|4 : cacCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATAAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCTCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTTTCCAA---------TTC--------CTAT------TTGG--------------AA--------------ATGAGAAA--TTTTAT--TTGGAA-AA-TTTATCTTTCCA-AC---------TAGGACGAAAC-G-ACTTTCCAG-T-G-G-GTA-A-GCATGCATTG-T--GGG---GGACTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TATGATCGAACAGTCGTACTCTTC-AAACTGCGATACTTTGCCA---AT-AAAA-ATG-------A---CAAA--AGATGGA--AA----A--A-AA--------GT--TTTGGG-AAA-AAAG--AG-----TTT--TT---CCAGAA-ATTCACTCTGTTGTG
gi|5 : CATAAAGCGTGTACTTTC-CGTA----GT-GTGTTTGAATATAACGTGACACCGGCACTTTCCAATTAAATAACACCGATA-----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCACTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATAAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGTATTT-T--GGG---GATCTTTAGATTATAATTGTGACATAAATCGGCAACATATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTTTTGTGt
gi|6 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCTAATTAAATAACACCGATAT----CAATATTGGAATCCTCCATTTGGAAGACCTCTGTTCCCATTG--GCC---------AA--T-----TT------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTTG--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTACCTTTCCA-AC---------ATGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGCATAT-T--TGG---GGTCTTTAGATTATAATTGCGACATAAATCGG-AA-TTGTG-A--CTTTTGGTTA-C--C-TTCT-TGTGATCGCACAGTCATACTCTTT-AAACTGCAATACTTTGTCA---AT-AAAA-AT--------A---CGAA--AGATAAA--AA----A--A-AA--------GC--TTTTCG-AAA-AAAG--AG----TTTT--TTTCCCCAGAA-ATTCACTGTGTTG
gi|7 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATTAAATAACACCGATAT----CTATATTGGAACCCTCCAATTCGTAAATCTCGGTTCCAATGG--GCC---------AG--T-----TC------T-AAAATA--GATTT-CCGA---------TAC--------CAAT------TTGG--------------AATTTACAGGTTGGAGATTAG-AAA-TTCCAA--TTGGAA-A--TTTATCTTTCGA-AC---------TTGGACGAAAC-A-ACTTTCCAGTT-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATTGGCAATTTATA-ATGCTTTTGATTA-C--CTTTTT-TGCGACCGCACAGTCGTTTTCTTC-AAACTGCGGTACTTTGCTT---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AAAG------AT--TTTTGG-AAATTGAG--TG----TTTT--T
gi|8 : cCATAAAGCATAGGCTTTT-CGTA----GT-CCGTGTAAATTTAACGTGACACCGACA------AATTAAATAACAACGATAA----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCCATTT--GCC---------AA--T-----TC------TAAAAATA--GATT-----------------C--------CAAT------TTGG--------------AA--------------AT-AAAAAA-TTCCAA--TTGAAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-GAG-G-A-A-GCATGCATTC-T--T-G---CATCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ACGCTTTTGGTGA-CTTT-TTTT-TATGATCCAACTGTCGTATTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATCTTTCGTTA---TGAA--AGAT-----A-------------------------------AAA-AAAG--AG----TTTTC-TT---CCAGAA-ATTCACTGTGCTGTGc
gi|9 : cCATAAAGCGTGGACTTTC-CCTA----GT-GGTTGTCAATCTAACGTGACACCATCACTTTCAAATTAAATAACACCGATAT----CAAT--TGGAACCCTCCAATTGGAAAACCGTAGTTCCAATTG--GCA---------AA--T-----TC------TAAACATA--GATTT-CCTA---------TTC--------CAGT------TTGGCAATTACAGGTTTAAA--------------ATTAG-AAA-TTCCAA--TTGAAA-A--TTTAACTTTCAC-GC---------TTGGACAAAAC-G-TCTTTCCAA-T-G-G-A-ATA-ACATGCATTT-T--TGG---GGTCCTATGATTATATTTGTGCCATAAATT---------------CTTTTGATTA-CTTT-TTTT-TGTGATAGCACAGCCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-GAAA-ATT-------G---CGAA--AGAT-----AA---------------------------GA-AAA-CAA---------------TT---CCAGAA-ATTCACTGTGTTGTGt
blockSeqs : T TATA A A GGAT A C TT TTTTCTAAA AT AGATC CTATTA CG T GTTGGAACG AAATTTGG AACAGG TCATTACAGGTTGGAA GAAAAG CA T AG T G GGGAAAGCT T G AG A G T T C A GTT TTT T A TT G T A ATT A C TTTCGTT TTT TT AAAATGTTTTGTTTATTTTTTA T GAGTGTTT TT TCC C
blockSeqs : . . . A . A N . . . . . . T . . . CAATTACAGGTTGGAA NNNNN G T A C . . . . TG . G . . . . G . . . TT T . . . . . . . . AAAAAAAAAAGTTTTTGGA . GCTATT C . .
blockSeqs : . . . C . A C . . . . . . . . . . AATTTACAGGTTGGAG GAAAA G . . T . . . . CG . G . . . . G . . . . . . . . . . . . . AAAAATAAAAGTTTTTGGA . GAGT . . .
blockSeqs : . . . N . A T . . . . . . . . . . CAATTACAGGTTTAAA AAAAA G . . A . . . . TT . T . . . . G . . . . . . . . . . . . . AAAAAAAAACGTTTTTGG . AAGT . . .
blockSeqs : . . . A . A C . . . . . . . . . . AA GAAA . . . T . . . . TG . G . . . . T . . . . . . . . . . . . . GGAAAAAAAGTTTTGGG . GAGT . . .
blockSeqs : . . . C . A A . . . . . . . . . . NN GAAA . . . T . . . . TT . . . . . . T . . . . . . . . . . . . . AAAAAAAAAGCTTTTCG . GAGT . . .
blockSeqs : . . . T . A A . . . . . . . . . . AA GAAA . . . T . . . . TG . . . . . . G . . . . . . . . . . . . . ACAAAAAATTTTTTGG . GTGT . . .
blockSeqs : . . . C . A G . . . . . . . . . . AA GATA . . . A . . . . TA . . . . . . T . . . . . . . . . . . . . AAAATAAAGGTTTTTG . GAGT . . .
blockSeqs : . . . C . A C . . . . . . . . . . AA TAAT . . . A . . . . AT . . . . . . T . . . . . . . . . . . . . AAAAAAAAGTTTTTGG . GAG . . .
blockSeqs : . . . N . A C . . . . . . . . . . AA GAAA . . . A . . . . TG . . . . . . T . . . . . . . . . . . . . TAATAAACAATTTTGG . GAG . . .
blockSeqs : . . . A . A A . . . . . . . . . . AA GAAA . . . A . . . . CT . . . . . . T . . . . . . . . . . . . . AAAAAAAGATTTTTGG . TAG . . .
blockSeqs : . . . N . A C . . . . . . . . . . AA GAAA . . . T . . . . TG . . . . . . T . . . . . . . . . . . . . AAAAAAGTTTTTGG . GAG . . .
blockSeqs : . . . N . A T . . . . . . . . . . AA GAAA . . . A . . . . TT . . . . . . T . . . . . . . . . . . . . AGAGTTTTCCA . GAG . . .
blockSeqs : . . . T . A C . . . . . . . . . . AA GAAA . . . T . . . . T . . . . . . T . . . . . . . . . . . . . AAAACAAATCT . AG . . .
blockSeqs : . . . C . . C . . . . . . . . . . GA GAAA . . . T . . . . T . . . . . . T . . . . . . . . . . . . . AAAAAACT . GA . . .
blockSeqs : . . C . . . . . . . . . . AA GAAA . . . A . . . . T . . . . . . T . . . . . . . . . . . . . AGTTTTT . AA . . .
blockSeqs : . . A . . . . . . . . . . AA GAAA . . . T . . . . T . . . . . . T . . . . . . . . . . . . . AAAATT . T . . .
blockSeqs : . . C . . . . . . . . . . AA GAAA . . . T . . . . T . . . . . . T . . . . . . . . . . . . . AAAAAG . G . . .
blockSeqs : A . . . . . . . . . . AA GAAA . . . C . . . . T . . . . . . G . . . . . . . . . . . . . AAGA . . . . .
blockSeqs : . . . . . . . . . . . AA AAA . . . T . . . . T . . . . . . G . . . . . . . . . . . . . ATT . . . . .
blockSeqs : . . . . . . . . . . AA . . . . T . . . . T . . . . . . T . . . . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . AA . . . . A . . . . T . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . AA . . . . . . . . . T . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . . . AA . . . . . . . . . T . . . . . . T . . . . . . . . . . . . .
blockSeqs : . AA . . . . . . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : AA**************************** T** AAAAAAAAGTTTTTGG********************* GAGT******
originalCons : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AA----A--A-AA--------GT--TTTTGG-AAA-AAAG--AG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
finalCons : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGGAA----------------------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAGT--G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAAAAAAAAGTTTTTGG---------------------AAA-AAAGAGT------TTT--TT---CCAGAA-ATTCACTGTGTTGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ATTAAATAACTTTTTTTCTTAATTTGAAAATAAAATACTAGCAAAATTCTGCAATCAATTGCTACAATTGTAAAATTGGAACCATTTTTAACCCGGTTAATTACCAATTGGCGAAATTGGGTCTCGACCTCAAAATCATTCTAATTACAATTGTGAACTTATCAATCTGTTTGGTAACAATTTCGTGATTCTATAATCGAACTTGTCAGATTGAGACATATAACCAATCGAAATACTAGTACGTCAAAATGAAAAAAATATATATTTCTAGAGA
Alignments
lowQualScore : 222222222222222222222222222222 111111 111 1111111111111111111 11111111
lowQualScore : 2 5555 2 1 4444 1 1 22 777777777 22 44444 444444 22 3 666666666 55555555 444444 888888888888888888888888888888 999999 66 3 33 4 1 666666666 1 1 222 1 7 1 1 1 1 222 222 1 1 33 2 1 1 222 1 1 4444444 222 22 5555555555555555555 6666 1 555 1 77777777 44 333 1
lowQualScore : . .... . . .... . . .. ......... .. ..... ...... .. . ......... ........ ...... .............................. ...... .. . .. . . ......... . . ... . . . . . . ... ... . . .. . . . ... . . ....... ... .. ................... .... . ... . ........ .. ... .
lowQualScore : 5 3333 5 0 5555 3 6 55 333333333 44 33333 888888 22 2 444444444 88888888 444444 555555555555555555555555555555 000000 55 0 55 8 5 222222222 5 5 444 4 1 4 4 4 4 444 555 4 4 88 8 4 4 555 4 4 6666666 555 00 2222222222222222222 2222 0 333 7 66666666 11 222 8
consensus : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AAAA----------AAAA--GTTTTTGG-AAA-AAAGAG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
Reference ( family-1450 ) : CATAAAGCGTGGACTTTC-CGTA----GT-GCGTGTGAATNTAACGTGACACCGGCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AAAA----------AAAA--GTTTTTGG-AAA-AAAGAG----TTTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|1 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCGATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCTA---------TCC--------CAAT------TTGG--------------AACTTACAGGTTTGAAATTAG-AAA-TTCCAA--CTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAGTT-G-G-A-A-A-GCATATATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--T-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AAAA----------AATA---TTTTTGG-AAT-AAAGAG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTG
gi|10 : CATAAAGCGTGAACTTTC-CGTA----GT-GCATGTGAAAATAACCTGACACCGACACTTTCCAATTAAATAACACCGGTAT----CAATATT----------------AAAACCTCTGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTA--------CAAT------TTGG--------------AA--------------ATTAGAAA--TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAA-T-G-T-A-A---GCATGGATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGGTTA-T--T-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTTCGATATTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGATAA---AAAA----------AAAA--GTTTTTGGAAAA-AAAGAG-----TTT--TT---CCAGAA-ATTCACTGTGTT
gi|11 : cAAGCGTGGACTTTC-CGT-----GTAGCGTGTTAATATGACGTGAAACCGACACTTTCAAATCAAATAACACCGATAT----CAATAGTGGAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN---------NN--N-----NN------NNNNNNNN--NNNNN-NNNN---------NNN--------NNNN------NNNN--------------NN--------------NNNNNNNNN-NNNNNN--NNNNNN-N--TT-ACCTTTCCA-AC---------TTGGACGAAAC-G-AATTTCCAGAG-G-G-A-A-A-GCATTCATTT-T--GGG---TTTTTTTAGATTAAAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAACCGTACTCATC-AAA-TGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGGA--AGATTTATGAAAA----------AAA
gi|12 : CTTTCCAATTAAATAACACCGATATGGATCAATATTAGAACCTTCCAATTGGAAAACCTTGATTCCCATTG--GCC---------AA--T-----TC------TCAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-AAA-TTCCAA--TTAGAA-A--TGTATCCTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGTATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAAATTATA-ACGTTTTTCGTTA-C--C-TTTT-TGTGATCGCACCGCCATACTCTTC-AAACTGTGATACTTTGTCA---AT-GAAG-ATA-------A---CGAA--AGAT-----AAAA----------AAAAACGTTTTTGG-AAA-AAA-AG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGctattcactgtatt
gi|13 : TTCCAGTTAAAAAACATCGATAC----CAAT--TAGAACCCTCCAATTGGAAAACCTCAGTTCCTATTG--GCCTTTTCTAAAAA--TAGATCTCCTATTATAAAAATA--AATTTTCCGA---------TTC--------CAAT------TTGGTCATTACAGGTTGGAA--------------ATTAG-AAA-TTCCGA--TTGGAA-A--TTAAAATTTCTA-AC---------TTGGACAAGAC-G-ATTTTTCAG-CGG-G-A-A-A-CCATGCGTTT-T--TGG---GGTCTTTACATTATAATTGTGACATAAATCGACAATTTATA-ATGTTTTTGAATA-C--C-TTTT-TGTGATCGCCAAGTCGTACTCTTC-AAATTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG------------------------A--GTTTTT-----------------------------CAAAACATTCATTGTGTTGTGtt
gi|14 : CACTTTCCAATTAAATAACACCGATTT----CAATATTGGAACACTCCAATTTGAAA------------ATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA--------CAGG--TTGGAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAGTT-G-G-C-A-A-GCATGCATAT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACATTGTCA---AT-AAAA-ATA-------G---CGAA--A-AT--------------------AGA--GTTTTCCA-AAA-AAt
gi|15 : catcaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCGCATTG--GTC---------AA--T-----TC------TTAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTAG-ATA-TTCCAA--TTGGAA-A--ATTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTTCAG-TGG-G-A-A-A-GCATGCATTT-T--GGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTTATG-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----ACAA----------AAAA--TTTTTTGG-AAA-AAAGAG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGttcactgt
gi|16 : CACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTTCAAATGGAAAACCTCGGTTCCAATTG--ACC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTAt
gi|16 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATTATAATTGTGATTTGAATCGGCAACTCATA-ATGCTTTTGGTTA-C--C-TTTT--GTGATCGCACAGTCGTACTTTTC-AAACTGCTATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AAAA----------TAAA--GGTTTTTG-AAA-AAAGAGTGTTTTTT--TT---CCAAAA-ATTCACTGTGTTGTGcaggtttataagattataattgtgatttgaatcggcaactcataatgcttttggttaccttttgtgatcgcacagtcgtacttttcaaactgctatactttgtcaataaaaataacgaaagataaaataaaggtttttgaaaaaagagtgttttttttccaaaaattcactgtgttgtgtt
gi|17 : ccataaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncactttccaattaaataacaccgatatcaatattggaacccttcaaatggaaaacctcggttccaattgaccaattctaaaaatagatttccgattccaatttggaatttacaggtttataTTCAATTGAATAACACAGATAT----CAATATTGCAACCCTCCAATTGGAAAACATCGGTTTCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------ATTATAAT--TTCCCA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACAAAAC-G-ACTTTCCAG-T-G-GGA-A-A-GCATGCATTT-TGTTTG---TTTTTTTAAATTATAATTATGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTT-AACCTGCGATACTTTGTTA---AT-AAGA-ATA-------A---CG----------------------------AAA--ATT----------AAAGA------TTT--TC---CCATGA-ATTCACTGTGTTGTGtt
gi|18 : ATTG--GAC---------TA--T-----TC------TAAAAATA--TATTT-CCGA---------TTC--------CAAT------TTAG--------------AA--------------ATGAG-AAA-TTCCAT--TTGGAA-A--TTTGACTTTCCA-GC---------TTGGTTAAAAT-G-ATTTTCCAGTT-A-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTAACATAAATCGGCAATCTATA-ATGCTTTTCATAA-C--C-TTTT-TGTGATCGCACAGTCGTACTCTTC-AAACTGTGACACTCTGTCA---ATAAAAA-AAA-------A---CGAA--AGAT-----AAAA----------AAt
gi|19 : atataacaagatattatttcaataattacgcttgcctaatcaaatgtttcaattAAA-AACACCGATAT----CAGT--TGGAACCCTCAAATTGGAAATACTCAGTTCCGAGAG--ACC---------AA--T-----TC------CAAAAATA--GATTT-CCGA---------TTCAAATTTGGCAATAACAGGTTGG--------------AA--------------ATGAG-AAA-TTCCAA--TTGGAA-A--TTTAACTTTCCA-GC---------TTGGACAAAAC-A-ACTTTTCAG-TGG-G-A-A-A-ACATGCATTT-T--TGG---GGTCTTTATATTATGATTATGACATAATTCGGCAATTTATA-ATGCTATTGATTA-C--C-TGTT-TGTG--------------CTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-----AAAA----------AAAgtaagagttcacttgtgttgtgt
gi|2 : CACTCTCCAATTAAAAAACACCGATAT----CAAT--TGGAAGCCTCCAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGGCAATTACAGGTTGGAA--------------ATTAGAAA--TTTTAA--TTGGAA-A--TATAACTTTCCA-GC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-----------ATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACACAAATCGGAAATTTATA-ATGCTTTTGATTA-C--C-TTTG-TGTGATCGCACAATCGTACTCTTC-AAACTACGATACTTTGGCT---AT-AAAA-ATA-------A---CGAA--AGAT-----AAAA----------AAAA--GTTTTTGG-AAA-AAATAG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTGtcactgtgttgtgtttt
gi|20 : ccagaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--T-----TC------TAAAACTA--GATTT-CACA---------TTT--------CAAA------TTGG--------------AA--------------ATTA---------CAGG-CTGGAA-A--TTAGAATTTACAGAA---------TTG-ACAAATC-G-ATTTGACAG-TAG-G-A-A-A-GCATGCGTTT-T---GG---TTTCTTTAGATTAAGATTGTGCAATAAATCGGCAATTTATA-ATGCTTTTGATTA-C--T-TTTTTTGTGATCGCACAGTCGTGTTCTTC-AAACTGCGACATATTGTCA---AT-AAAA-AAA-------A---CGAA--AGt
gi|21 : attggtttagAAAATACGAATTT-CCAAGTTGGAACGTTC--------CAAC------T--G--------------GA--------------ATTA--AAA-TTCCAAG-TTGGAA-AAGTTGA-ATTTCCA-AA---------T--GGCAAAATTA-AGTTTCCAAAT-T-G-A-A-A-ACATGTGTTT-T---GG---GGTATTTTGGGTACAATTATG---------GATAATTTG---AT-----TGGTTA-C--C-TTTC-CGTGATTCCATTAACGTACTTGTC-AGATTGAGACATTTTGCCA---AT-CAAA-ATA-------ATTTCAAATTAAAA-----AAAA----------CAAA-----TCTAG-AAA-AGCTAT----TTTT--TT-------AA-ATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttatcaattaaacttcgaatgttgatgttatctttcatttt
gi|22 : taattaaatactttttatttccaactttcaactttccaagttCATAAAGCGTGGATTTTTTCGTA----GT-ACGTGAGAATCTAGTGTGACACCGATACgttttctgtt
gi|22 : aTTTCTAG-T-G-A-G-G-A-GCATGCGTTT-T--TATTTTGGTCTTTAAATTACAATTATGAGCTAAATCGGGAACATATG-ATGCGTTTGGTTA-C--C-ATTT-TGTTGTCGTATAGTCGTATCTTTA-AAACTGCGGCATGTTGTCT---AT-AAAA-ATA-------A---CGAA--AGAT-----TAAT----------AAAC--AATTTTGG-AAA-AAAAA------TCT--TT---CCAGAA-AATCACTGTTTTATcaaatggaactctcaaactggagagtcgtgattcaatttttctagtgaggagcatgcgtttttattttggtctttaaattacaattatgagctaaatcgggaacatatgatgcgtttggttaccattttgttgtcgtatagtcgtatctttaaaactgcggcatgttgtctataaaaataacgaaagattaataaacaattttggaaaaaaaatctttccagaaaatcactgttttat
gi|23 : acataaagcgtggattttttcgtagtacgtgagaatctagtgtgacaccgataccaaatggaactctcaaactggagagtcgtgattcaattCAATTATATAACACTGATAT----CAATATTGGAACCCTCCAATAGGAAAACCTCGGTTCACATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAGAAA--TTCGAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTGGACAAAAC-G-ACTTTTT-G-T-G-G-----------------------G---GGTCTTTAGATTATAATTTTGACATAAATCGGCAATTTAAA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-TAACTGCAATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AG
gi|25 : aC------TAAAAATA--GACTT-TCGT---------TAC--------CAAT------TTG---------------AA--------------ACTA--------CCGACATTGGAATA--GTAAACGTTTCA-GC---------TTGGAAAAAAA-G-ATTTTCCAG-T-G-GGA-A-A-GCATGCATTT-T--TGG---TGTTTTTAGATTACAATTGTGA------------------G-ATGTGTTTGGTTA-T--C-ATTT-TGTTATCGCAAAGTCGTACTCATA-AAACTGCAACGCTTTGTAA---AT-AAAA-A-A-------A---CGAA--AGAT-----AAAA----------AA-----CT------AA-------------TTT--TT---CAAGAA-ATTTACTGTGTTGT
gi|26 : AACCCTGCAATTGGAAAACCTCGGTTCCAATTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CCGA---------TTC--------CAAT------TTGG--------------AA--------------TTTA---------CAGG-TTGGAA-A--TTTATCTTTCTA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-G-A-ACGCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATCGGCAATTCATA-ATGCTTTTGATTA-C--C-TTTT-TGTGATTGCACAGTCGTACTCTTC-AAACTGCGAT
gi|27 : ------TTGG--------------AA--------------ATTAGAAA--TTCAAA--TTGAAA-A--TTTA-----------------------------AC-G-ATTCTCCAG-T-G-GGA-A-A-GCAGTCATGT-T--TGA---GGTCTTTAGATTGTAATTGTGACATAAATTGGCAGTTTTTTTATGCATTTGATTA-C--C-TATT-TGAAATTGCGTTATCGTTCTCTTA-AAATTGCGACACTTTGTCA---AT-AAAACATA-------A---CGAA--A-----------A----------AAAA--G--------------AGAG----TTTT--TT---TCAGAA-ATTCACCGTGTTGT
gi|28 : AA--TTGGAA----------TTTCCA-ACGGGAAAGCTTTGAAAAAAAA-G-AGTTTCCAG-T-A-GTA-A-A-ACATGCATTT-T--TGG---GGTCTTTAGATTACAATTGTAACTTAAA--------TTATA-A----TTTAGATA-C--G-TTTT-TGTGATCGCATAATCATACTCTTA-AAACTGCTACACATTGTCAATTAT-AAAA-GTA-------A---TGCA--AGAT-----A--------------------TT--------------------TTTT--TT---TGAGAA-ATGCACTGTTTTt
gi|29 : tAG-T-G-GGA-A-A-GCATGCAATT-T--TGG---TGTCTTTAGATTACAACTGT---ACAAATCGGTAACTTATA-ATGCGTTTGGTTA-C--CGTTTT-TGTGATCGCACAGTTGTACTCTTA-AAACTGCG--ACTGTGTAA---AA-AAAA-ATA-------A---CTAA--AGaatt
gi|3 : tttatttaaataataCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCAATTAAATAACACCGATAT----CAATATTGGAACCCTCTAATTGGAAAACCTCGGTTCCCATTG--GCC---------AA--T-----TC------TAAAAATA--GGTTT-CCGA---------TTC--------CAAT------TTGA--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTATTTTTCCA-AC---------TTAGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGCA--T-T--TAC---GATCTTTCGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTATTTA-C--C-GTTT-TGTGATTGCATAGTCGTACTCTTCAAAACTGTGGTACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGTT-----AAAAAT--------AAAA--GTTTTTGGAAAA-AAAGAG-----TTT--TT---CCAGAA-ATTCACTGTGTTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttattacttactt
gi|30 : cCATGCATTTAT--TGG-----TATTTAGATTACAATT--------------------ATA-ATGCGTTTGGTTAAC--T-TTTT-TGTGATCGCTTATTCGTACTCTTA-AAACTGCGGCACTTTGTAA---AT-AAAA-AT-------------GAT--AGAT-----AAAATGTTTTGTTTA------TTTTTTA-AAT-AAAG-------TTT--TT---CCGGAA-ATTCACTGTGCTGatt
gi|31 : AAACCTAGG--CCTATTGTTGCC---------AAATT-----TC------TAAATACA--AATTC-CAGA------------------------------TTGG--------------AA--------------GT--GAAAAGTGCC----TTGGAA-A--Tg
gi|32 : gcCATAAAGCTTAGGCTTTC-CATA----GT-GCGTGTGACTATAACGTGACACCAGCTCTTTCCAATTAAATAACACCGATagttaatttgaaac
gi|33 : cAGCGAGTACTTTC-TATATATAGC-GCGTGTGAATCTAACGTGACACCGG-ACTT---AATT
gi|34 : -TTCCAA--TTGGAATA--ACTAAATTTTCA-AT---------T--GATAAAAT-GGAGTTTCCAACT-G-G-A-A-A-GCATGTGTTT-T--gtattcagatccgataca
gi|35 : taaactCATAAGGCGTCGACTTTC-CGAA----GT-CCGTGTGAAATTAACATGGCATCGGCACTTT
gi|36 : cG-AAA-AACAAG----TTTTTTTT---CCAGAA-ATGCACTGTGTTGTG
gi|37 : ATAAACCGTGCCCTTTC-CATT----TT-GCGTGTGAATCTAACGCAACACCGGtttattctcaaagtc
gi|38 : aAA----TTTT--AT---CCAGAA-ATTCACTGTGTTGTGtt
gi|39 : acatC-TGTA----GT-GCGTGTGAATCTAACGTGACAACGttat
gi|4 : cacCATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATAAAATAACACCGATAT----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCTCATTG--GCC---------AA--T-----TC------TAAAAATA--GATTTTCCAA---------TTC--------CTAT------TTGG--------------AA--------------ATGAGAAA--TTTTAT--TTGGAA-AA-TTTATCTTTCCA-AC---------TAGGACGAAAC-G-ACTTTCCAG-T-G-G-GTA-A-GCATGCATTG-T--GGG---GGACTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ATGCTTTTGGTTA-C--C-TTTT-TATGATCGAACAGTCGTACTCTTC-AAACTGCGATACTTTGCCA---AT-AAAA-ATG-------A---CAAA--AGATG----GAAA----------AAAA--GTTTTGGG-AAA-AAAGAG-----TTT--TT---CCAGAA-ATTCACTCTGTTGTG
gi|5 : CATAAAGCGTGTACTTTC-CGTA----GT-GTGTTTGAATATAACGTGACACCGGCACTTTCCAATTAAATAACACCGATA-----CAATATTGGAACCCTCCAATTGGAAAACCTCGGTTCCCACTG--GCC---------AA--T-----TC------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTGG--------------AA--------------ATAAGAAAA-TTCCAA--TTGGAA-A--TTTATCTTTCCA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-G-G-A-A-A-GCATGTATTT-T--GGG---GATCTTTAGATTATAATTGTGACATAAATCGGCAACATATA-ATGCTTTTGGTTA-C--C-TTTT-TGTGATCGCACAGTCATACTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATA-------A---CGAA--AGAT-------AA----------AAAA--GTTTTTGG-AAA-AAAGAG----TTTT--TT---CCAGAA-ATTCACTGTTTTGTGt
gi|6 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCTAATTAAATAACACCGATAT----CAATATTGGAATCCTCCATTTGGAAGACCTCTGTTCCCATTG--GCC---------AA--T-----TT------TAAAAATA--GATTT-CTGA---------TTC--------CAAT------TTTG--------------AA--------------ATTAG-AAA-TTCCAA--TTGGAA-A--TTTACCTTTCCA-AC---------ATGGACGAAAC-G-ACTTTCCAG-TGG-G-A-A-A-GCATGCATAT-T--TGG---GGTCTTTAGATTATAATTGCGACATAAATCGG-AA-TTGTG-A--CTTTTGGTTA-C--C-TTCT-TGTGATCGCACAGTCATACTCTTT-AAACTGCAATACTTTGTCA---AT-AAAA-AT--------A---CGAA--AGATA----AAAA----------AAAA--GCTTTTCG-AAA-AAAGAG----TTTT--TTTCCCCAGAA-ATTCACTGTGTTG
gi|7 : CATAAANNNNNNNNNNNN-NNNN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCAAATTAAATAACACCGATAT----CTATATTGGAACCCTCCAATTCGTAAATCTCGGTTCCAATGG--GCC---------AG--T-----TC------T-AAAATA--GATTT-CCGA---------TAC--------CAAT------TTGG--------------AATTTACAGGTTGGAGATTAG-AAA-TTCCAA--TTGGAA-A--TTTATCTTTCGA-AC---------TTGGACGAAAC-A-ACTTTCCAGTT-G-G-A-A-A-GCATGCATTT-T--TGG---GGTCTTTAGATTATAATTGTGACATAAATTGGCAATTTATA-ATGCTTTTGATTA-C--CTTTTT-TGCGACCGCACAGTCGTTTTCTTC-AAACTGCGGTACTTTGCTT---AT-AAAA-ATA-------A---CGAA--AGAT-----AAAA----------AAAG--ATTTTTGG-AAATTGAGTG----TTTT--T
gi|8 : cCATAAAGCATAGGCTTTT-CGTA----GT-CCGTGTAAATTTAACGTGACACCGACA------AATTAAATAACAACGATAA----CAATATTGGAACCCTTCAATTGGAAAACCTCGGTTCCCATTT--GCC---------AA--T-----TC------TAAAAATA--GATT-----------------C--------CAAT------TTGG--------------AA--------------AT-AAAAAA-TTCCAA--TTGAAA-A--TTTATCTTTCAA-AC---------TTGGACGAAAC-G-ACTTTCCAG-T-GAG-G-A-A-GCATGCATTC-T--T-G---CATCTTTAGATTATAATTGTGACATAAATCGGCAATTTATA-ACGCTTTTGGTGA-CTTT-TTTT-TATGATCCAACTGTCGTATTCTTC-AAACTGCGATACTTTGTCA---AT-AAAA-ATCTTTCGTTA---TGAA--AGAT-----A----------------------------AAA-AAAGAG----TTTTC-TT---CCAGAA-ATTCACTGTGCTGTGc
gi|9 : cCATAAAGCGTGGACTTTC-CCTA----GT-GGTTGTCAATCTAACGTGACACCATCACTTTCAAATTAAATAACACCGATAT----CAAT--TGGAACCCTCCAATTGGAAAACCGTAGTTCCAATTG--GCA---------AA--T-----TC------TAAACATA--GATTT-CCTA---------TTC--------CAGT------TTGGCAATTACAGGTTTAAA--------------ATTAG-AAA-TTCCAA--TTGAAA-A--TTTAACTTTCAC-GC---------TTGGACAAAAC-G-TCTTTCCAA-T-G-G-A-ATA-ACATGCATTT-T--TGG---GGTCCTATGATTATATTTGTGCCATAAATT---------------CTTTTGATTA-CTTT-TTTT-TGTGATAGCACAGCCGTACTCTTC-AAACTGCGATACTTTGTCA---AT-GAAA-ATT-------G---CGAA--AGAT-----AA------------------------GA-AAA-CAA-------------TT---CCAGAA-ATTCACTGTGTTGTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ATTAAATAACTTTTTTTCTTAATTTGAAAATAAAATACTAGCAAAATTCTGCAATCAATTGCTACAATTGTAAAATTGGAACCATTTTTAACCCGGTTAATTACCAATTGGCGAAATTGGGTCTCGACCTCAAAATCATTCTAATTACAATTGTGAACTTATCAATCTGTTTGGTAACAATTTCGTGATTCTATAATCGAACTTGTCAGATTGAGACATATAACCAATCGAAATACTAGTACGTCAAAATGAAAAAAATATATATTTCTAGAGA