lowQualScore : 1 1 1 1 22 11 1 222 1 1 2222 1 1 2 1 111111111111 111 4444444444444444444444444 1 11
lowQualScore : 6 6 7 6 7 6 5 0 2 4 11 2 77 0 3 1 7 333 7 3 7 6 8888 7 3 6 2 8 1 6 6 2 0 0 0 3 0 5 666666666666 8 6 4 4 66 222 5 4 4 5 6 5 66 66 3333333333333333333333333 777 3 5 3 666 6 88 7
lowQualScore : . . . . . . . . . . .. . .. . . . . ... . . . . .... . . . . . . . . . . . . . . . ............ . . . . .. ... . . . . . . .. .. ......................... ... . . . ... . .. .
lowQualScore : 0 0 0 0 0 0 0 5 5 0 00 5 55 7 3 0 3 333 3 3 3 3 3333 3 3 5 2 0 0 7 0 5 2 0 0 5 0 7 666666666666 8 0 4 4 11 222 0 4 4 0 0 0 99 99 3333333333333333333333333 222 6 6 6 444 5 66 1
consensus : AAGGAAGATATTGCTGGAGTCACGACCAAGTTCTCCGAGAAACGACAGACGTTCTTGAGAGGGAATGGAAAAAGTCCAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAANGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATNTTGGATGGTGCCAACGACTGNGAAATGANGGTAGACCTTAACAGGAAGC-TGCAGTTTCC---AAGCATCGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAACGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGNGACGCGTGGATTC-CCAGCTCAANTCC-TGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCTGCAGAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACTATC-GCTC--CAC--CAC-----------------------CAC--GAGCTTGT-CCTGGGATTAAAG-GAGCGAAACA---AGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
Reference ( gi|2 ) : AAGAAAGATATCGCTGGAGACACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAAAGGAAAAAGCCAAGGGCACGGTCAACCAGCAGGCACATCACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCGACGACTGGGAAATGAGTGTAGACCTTGACAGGAAGC-TACAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTAAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAAAAGTAGGGACGCGTGGATTC-CCAGCTC-ATTCC-TGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAAAATCTCCAAAGTTGCAGAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACATTATC-GCTC--CAC--CCC-----------------------CAC--GAGCTTGT-CCAGGGATTAAAG-GAGCGAAACA---AGTGATGACTGGTGG-GCCCTAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATTAT
gi|1 : AAGGAAGATATTGCTGGAGTCACGACCAAGTTCTCCGAGAAACGACAGACGTTCTTGAGAGGGAATGGAAAAAGTCCAGGGCACGGTCAACCAGCAGGCACATTACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATTTTGAATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTAACAGGAAGT-TGCAGTTTCC---AAGCATCGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTCAACAA----CTTGCATGA-AACTGATGATTGTGGAACTGACGGTGCCTCGGGAGGAAAGA-TGCAACCAGGCAAATGAGAAGAAGAGAACTAAGTACGACGATCTTGTCCAGCAATGTAAAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGAAGGGACGCGTGGATTC-CATGCTCAATTCC-AGTGTAAATTACTCCAAGACATCGGAATGCCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAATAATCTCCAAAGCTGCAGAAA-AGAGC-TCCAGCTGACTAT--GGCTGAGA---AGAG-AGGCAAGTAGTTGGACGCCTAC-CACTGATG-GGA-AGTGTTCGGCCAACACTATC-GCTC--CAC--CAC-----------------------CAC--GAGATTGT-CCTGGGAGTAAAG-GAGCGAAACA---AGTGATGACGGGTGG-CCCCCAGCTGATCACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|3 : AGCAGGCACGTAACATTTGTTAAGCAATGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGC-AACGACTGTGAAATGATGGTAGACCTTGACAGGAAGC-TGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACAGCTAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACAATCTTGTCCAGCAGTGTAGAGAA-AGGGTTCGAAAGTGTAGAGCTATCCCATAGAAGTAGGGGTGCATGGATTC-CCAGCTCAATCCC-TGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCTGCAGca
gi|10 : GTGGACCTTAAGAGGCAGCAGAC-GTTTCCGTCAGAAATTG-CCATCACCAGACTCAGACCAGAT---GTTCTGTTTCTAACAAGGAGC--ACAAAACAACTCATAATTCTGGAACTTACATTGCCATGGGAGGAGAGAATG-AAGGAAGCTCACAAGAGGAAGAAAACCAAATA
gi|17 : GAT-ATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TTCAACCAGGC
gi|4 : TTGGGAGGGAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGTGACGCGTGGATTTTCCAGCTC-AATCCATGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCTGCAGAAA-AGAGC-TCCAGTTGACTAT--GGCTGAGA---AGAG-AGCCAAGTAGCTGGAAGCCTAC-CACTGATG-GGTAAGTGTTTGGCCAACACTATC-GCTC--CAC--CAC-----------------------CAC--GAGCTTGT-CCTGGGATTAAAG-GAGCGAAACA---AGTGATGACTGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGTAGTGTAGCTGTATTATT
gi|5 : GGAGCTATCCTATAGAGGTAGTGAGGCGTGGATTC-CCAGCTC-AGTCC-TGTGGAAATTACTCCAAGACATTGGAATGTCAGGACTTCAA-AA-----GATCTGAAGCTGACAGTTAGAAGAATTTCCAAAGCTGCAGAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCGGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACTATT-GCTC--TAC--CAC-----------------------CAC--GAGCTTGT-CCTGGGATTAAAT-AAGCGAAATA---AGTGATGACGGGTGG-CCCCAAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTAATATTcat
gi|8 : cGGAAATTGCTCCAAGACATAGGAATGTCAGAACTTCAA-AA-----G--------CTTGCAGTCGGAAGAATCCCCAAAGCTGCAGAAA-AGAGA-TCCAGCTGGCTAT--GGCTGAGA---AGAG-ACGCAAGTAGCTGGAAGCCCAC-TACTTCTG-GGcat
gi|13 : AGTATTAAGACTCCAGTGACGTTCGA-----AACGGGCAGTCAGAATAATTGGGAAAGCCACCGAAA-AAAGC-TCAATTTGGCAAT--GGCTG-GA---Aattaaaggagctaaagaagtaacaaagggtggcctccagctgatgacatcagtggttagcagtgtagctgaataattca
gi|7 : ccatccgctctagtctagtccgaaatgctta-AA-----GA-----AGCAGGCAGTCTGAAGAATCTCCAAAGCTGCAGAAA-AGAGC-TCCAGCTGGCTAT--AGCTGAGA---AGAG-ATGCAAGTAGCTGGAAACCTAC-CACTGATG-GGT-AGTGTTTGGCCAATACTATC-ACTC--CACAACCC-----------------------GGC----ACTTGT-CCTGGTATTAAAG-TA-TGAAACA---AGTGATGACAGGTGG-CCCCCAGCTGATGACATCACTGGTTAGCAGTGTAGCTGTATT
gi|9 : acGGAAGAATCTCCAAAACTGCAGAAA-AGAGT-TCAAGTTGGCTAT--TGCTTAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGTTG-GGT-AATGTTTGGCCAACACTATC-GCTC--CAT--CAC-----------------------CAC--GAGCTTGT-CCTGGGATTAAAG-GAGCGAAACA---AGTGATGACTGGTGA-CCCCCAGTTGATGACATCAGTAGTTAGCAGTGTAGCTGTATTATT
gi|11 : GCAGAGA-AG-GCATTCAGTTGTCTGTTGGGC-AAGAT--AGAACAGG--AG-AGATGGAAGCTAGC-CACTTAGG-GGT-AGTGATTAGCCATCACTACC-AATC--CAC--C------------------------------------GT-CCTTGGCATAAAG-GATAGAAACACTTACTGATGGATTGTG----CCCAGCTGATGcat
gi|6 : gctcagaaagccaAGAGAGAGAGG--CCAGTTGGCTCT--GGCTACAATGCAGTG-AACCAACT---TGGCAGCCGATGTA--GACGAGGT-AGTGTCTGATCAGCACTACCTGTCC--CGC--GAC-----------------------CTG--GAGGATGTACCGAGCAT--AAGTGGGCGGAACA---TCCGATGACTGGTGGAGTTTCGGCCGACGACGTCAATGTTAAGCAGTAT
gi|12 : ttcacgctcttggttaagctacacagagTAGCTTGAAGTCCAC-TACTGATG-TTT-GGTGTTTGGCCAACACTATC-CATCTGCAC--CCCCCCCCCCCCTTCCCACACACACACACCCGAGCTTGT-CCTGGGATTAAAT-GAACCAAACA---AGTGGTGACGGGTGG-TCCtccagtatctacacatcggtataaaatacttacgaaactttgctattatatgtccat
gi|8 : CC-----------------------CAC--TA-CTTCT----GGGATTAAAG-GAGCTAAAGA---AGTAACAAAGGGTGG-CCTCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGAATAATTaaaagtga
gi|15 : ggaaattgctccaagacataggaatgtcagaacttcaaaagcttgcagtcggaagaatccccaaagctgcagaaaagagatccagctggctatggctgagaagagacgcaagtagctggaagAGCTTGT-CCTGGGATTAAAG-GAGCGAAACA---TGTGATGACGGGTAG-CCCCCAGCTGATGACATCGGTGGTTAGCAGTGTAGCTGTAGTATTca
gi|14 : AGCTTGT-CTCTGAATTAAAC-GTGCGAA-CA---AGTGATGACGAGTAG--CCCCAACTGATGACATCAGTGGTGAGCACTGTAGCTGTATCATTcat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CTACGCCACAGTTAATCAACTTGGCAGCCGACGTAGATGAGGTAGTGTGTGATCACCACTACCTGTCCC
Alignments
lowQualScore : 111 1 2222 1 11111 11111 111111 111 2222222222222222222 1111111
lowQualScore : 4 4 2 0 1 1 1 6 1 1 777 2 3 0 3 1 1111 3 0 3 6 2 2 1 8 222 5 22222 22222 3 000000 4 4 55 111 4 4 4 4 8888 9999999999999999999 3333333 0 5 3
lowQualScore : . . . . . . . . . . ... . . . . . .... . . . . . . . . ... . ..... ..... . ...... . . .. ... . . . . .... ................... ....... . . .
lowQualScore : 0 0 5 7 0 0 0 7 0 0 555 0 2 0 2 2 2222 2 0 2 7 8 5 0 0 666 0 55555 55555 6 555555 0 0 55 000 4 0 0 4 5555 3333333333333333333 0000000 7 7 3
consensus : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATTCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
Reference ( family-1442 ) : AAGGAAGATATTGCTGGAGTCACGACCAAGTTCTCCGAGAAACGACAGACGTTCTTGAGAGGGAATGGAAAAAGTCCAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAANGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATNTTGGATGGTGCCAACGACTGNGAAATGANGGTAGACCTTAACAGGAAGCTGCAGTTTCC---AAGCATCGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAACGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGNGACGCGTGGATTC-CCAGCTCAANTCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|1 : AAGGAAGATATTGCTGGAGTCACGACCAAGTTCTCCGAGAAACGACAGACGTTCTTGAGAGGGAATGGAAAAAGTCCAGGGCACGGTCAACCAGCAGGCACATTACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATTTTGAATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTAACAGGAAGTTGCAGTTTCC---AAGCATCGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTCAACAA----CTTGCATGA-AACTGATGATTGTGGAACTGACGGTGCCTCGGGAGGAAAGA-TGCAACCAGGCAAATGAGAAGAAGAGAACTAAGTACGACGATCTTGTCCAGCAATGTAAAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGAAGGGACGCGTGGATTC-CATGCTCAATTCCAGTGTAAATTACTCCAAGACATCGGAATGCCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAATAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGACTAT--GGCTGAGA---AGAG-AGGCAAGTAGTTGGACGCCTAC-CACTGATG-GGA-AGTGTTCGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGATTGTCCTGGGAGTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATCACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|10 : GTGGACCTTAAGAGGCAGCAGACGTTTCCGTCAGAAATTG-CCATCACCAGACTCAGACCAGAT---GTTCTGTTTCTAACAAGGAGC--ACAAAACAACTCATAATTCTGGAACTTACATTGCCATGGGAGGAGAGAATG-AAGGAAGCTCACAAGAGGAAGAAAACCAAATAca
gi|11 : AAAGCCAGCA------GAGA-AG-GCATTCAGTTGTCTGTTGGGC-AAGAT--AGAACAGG--AG-AGATGGAAGCTAGC-CACTTAGG-GGT-AGTGATTAGCCATCACT----ACC-AA----------------TCCAC-------C-----------GTCCTTGGCATAAAGGATAGAAACACTTACTGATGGATTG-TGCCCAGCTGATG
gi|12 : gctcagTAGCTTGAAGTCCAC-TACTGATG-TTT-GGTGTTTGGCCAACACTATCCATCTGCACCCCCCCCCCCCCTTCCCACACACACACACC-CGAGCTTGTCCTGGGATTAAATGAACCAAACAAGTGGTGACGGGTGG-TCC
gi|13 : AGTATTAAGACTCCAGTGACGTTCGA-----AACGGGCAGTCAGAATAATTGGGAAAGCC-ACC------GAAA-AAAGC-TCAATTTGGCAAT--GGCTG-GA---Aaaaagtga
gi|14 : ccatccgctctagtctagtccgaaatgcttaGGCCAACACT----TTC-------------------T------------------AGCTTGTCTCTGAATTAAACGTGCGAA-CAAGTGATGACGAGTAG-CCCC-AACTGATGACATCAGTGGTGAGCACTGTAGCTGTATCATT
gi|15 : AGCTTGTCCTGGGATTAAAGGAGCGAAACATGTGATGACGGGTAG-CCCCCAGCTGATGACATCGGTGGTTAGCAGTGTAGCTGTAGTATTcatca
gi|17 : GAT-ATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TTCAACCAGGCcat
gi|2 : AAGAAAGATATCGCTGGAGACACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAAAGGAAAAAGCCAAGGGCACGGTCAACCAGCAGGCACATCACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCGACGACTGGGAAATGAGTGTAGACCTTGACAGGAAGCTACAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTAAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAAAAGTAGGGACGCGTGGATTC-CCAGCTC-ATTCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAAAATCTCCAAAGTT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACATT----ATC-GC----------------TCCAC-------CCCCACGAGCTTGTCCAGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-GCCCTAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|3 : AGCAGGCACGTAACATTTGTTAAGCAATGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGC-AACGACTGTGAAATGATGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACAGCTAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACAATCTTGTCCAGCAGTGTAGAGAA-AGGGTTCGAAAGTGTAGAGCTATCCCATAGAAGTAGGGGTGCATGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------Gat
gi|4 : TTGGGAGGGAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGTGACGCGTGGATTTTCCAGCTCAATCCATGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGTTGACTAT--GGCTGAGA---AGAG-AGCCAAGTAGCTGGAAGCCTAC-CACTGATG-GGTAAGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGTAGTGTAGCTGTATTATT
gi|5 : GGAGCTATCCTATAGAGGTAGTGAGGCGTGGATTC-CCAGCTCA-GTCCTGTGGAAATTACTCCAAGACATTGGAATGTCAGGACTTCAA-AA-----GATCTGAAGCTGACAGTTAGAAGAATTTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCGGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATT-GC----------------TCTAC-------CACCACGAGCTTGTCCTGGGATTAAATAAGCGAAATAAGTGATGACGGGTGG-CCCCAAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTAATATTcat
gi|6 : cAAGCT-ACACAGAGAGAGAGAGAGG--CCAGTTGGCTCT--GGCTACAATGCAGTG-AACCAACT---TGGCAGCCGATGTA--GACGAGGT-AGTGTCTGATCAGCACT----ACCTGT----------------CCCGC-------GACCTGGAGGATGTACCGAGCATAAGTGGGCGGAACATCCGATGACTGGTGGAGTTTCGGCCGACGACGTCAATGTTAAGCAGTATcat
gi|7 : ttcacgctcttggtt-AA-----GA-----AGCAGGCAGTCTGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--AGCTGAGA---AGAG-ATGCAAGTAGCTGGAAACCTAC-CACTGATG-GGT-AGTGTTTGGCCAATACT----ATC-AC----------------TCCAC-------AACCCGGCACTTGTCCTGGTATTAAAGTA-TGAAACAAGTGATGACAGGTGG-CCCCCAGCTGATGACATCACTGGTTAGCAGTGTAGCTGTATTtccagtatctacacatcggtataaaatacttacgaaactttgctattatatgtccat
gi|8 : acGGAAATTGCTCCAAGACATAGGAATGTCAGAACTTCAA-AA-----G--------CTTGCAGTCGGAAGAATCCCCAAAGCT-GCA------GAAA-AGAGA-TCCAGCTGGCTAT--GGCTGAGA---AGAG-ACGCAAGTAGCTGGAAGCCCAC-TACTTCTG-GG
gi|8 : TTCTGGGATTAAAGGAGCTAAAGAAGTAACAAAGGGTGG-CCTCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGAATAATTattaaaggagctaaagaagtaacaaagggtggcctccagctgatgacatcagtggttagcagtgtagctgaataattca
gi|9 : ggaaattgctccaagacataggaatgtcagaacttcaaaagcttgcagtcggaagaatccccaaagctgcagaaaagagatccagctggctatggctgagaagagacgcaagtagctggaagcccactacGGAAGAATCTCCAAAACT-GCA------GAAA-AGAGT-TCAAGTTGGCTAT--TGCTTAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGTTG-GGT-AATGTTTGGCCAACACT----ATC-GC----------------TCCAT-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGA-CCCCCAGTTGATGACATCAGTAGTTAGCAGTGTAGCTGTATTATTca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTACGCCACAGTTAATCAACTTGGCAGCCGACGTAGATGAGGTAGTGTGTGATCACCACTACCTGTCCC
Alignments
lowQualScore : 111 1 2222 1 11111 11111 111111 111 2222222222222222222 1111111
lowQualScore : 1 1 1 0 1 6 777 3 0 3 1 1111 3 0 3 6 2 8 0 6 5 22222 22222 3 000000 4 4 55 111 4 4 4 4 8888 9999999999999999999 3333333 0 5 3
lowQualScore : . . . . . . ... . . . . .... . . . . . . . . . ..... ..... . ...... . . .. ... . . . . .... ................... ....... . . .
lowQualScore : 0 0 0 7 0 7 555 2 0 2 2 2222 2 0 2 7 5 0 8 8 0 55555 55555 6 555555 0 0 55 000 4 0 0 4 5555 3333333333333333333 0000000 7 7 3
consensus : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
Reference ( family-1442 ) : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATTCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|1 : AAGGAAGATATTGCTGGAGTCACGACCAAGTTCTCCGAGAAACGACAGACGTTCTTGAGAGGGAATGGAAAAAGTCCAGGGCACGGTCAACCAGCAGGCACATTACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATTTTGAATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTAACAGGAAGTTGCAGTTTCC---AAGCATCGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTCAACAA----CTTGCATGA-AACTGATGATTGTGGAACTGACGGTGCCTCGGGAGGAAAGA-TGCAACCAGGCAAATGAGAAGAAGAGAACTAAGTACGACGATCTTGTCCAGCAATGTAAAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGAAGGGACGCGTGGATTC-CATGCTCAATTCCAGTGTAAATTACTCCAAGACATCGGAATGCCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAATAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGACTAT--GGCTGAGA---AGAG-AGGCAAGTAGTTGGACGCCTAC-CACTGATG-GGA-AGTGTTCGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGATTGTCCTGGGAGTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATCACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|10 : GTGGACCTTAAGAGGCAGCAGACGTTTCCGTCAGAAATTG-CCATCACCAGACTCAGACCAGAT---GTTCTGTTTCTAACAAGGAGC--ACAAAACAACTCATAATTCTGGAACTTACATTGCCATGGGAGGAGAGAATG-AAGGAAGCTCACAAGAGGAAGAAAACCAAATAca
gi|11 : AAAGCCAGCA------GAGA-AG-GCATTCAGTTGTCTGTTGGGC-AAGAT--AGAACAGG--AG-AGATGGAAGCTAGC-CACTTAGG-GGT-AGTGATTAGCCATCACT----ACC-AA----------------TCCAC-------C-----------GTCCTTGGCATAAAGGATAGAAACACTTACTGATGGATTG-TGCCCAGCTGATG
gi|12 : gctcagTAGCTTGAAGTCCAC-TACTGATG-TTT-GGTGTTTGGCCAACACTATCCATCTGCACCCCCCCCCCCCCTTCCCACACACACACACC-CGAGCTTGTCCTGGGATTAAATGAACCAAACAAGTGGTGACGGGTGG-TCC
gi|13 : AGTATTAAGACTCCAGTGACGTTCGA-----AACGGGCAGTCAGAATAATTGGGAAAGCC-ACC------GAAA-AAAGC-TCAATTTGGCAAT--GGCTG-GA---Aaaaagtga
gi|14 : ccatccgctctagtctagtccgaaatgcttaGGCCAACACT----TTC-------------------T------------------AGCTTGTCTCTGAATTAAACGTGCGAA-CAAGTGATGACGAGTAG-CCCC-AACTGATGACATCAGTGGTGAGCACTGTAGCTGTATCATT
gi|15 : AGCTTGTCCTGGGATTAAAGGAGCGAAACATGTGATGACGGGTAG-CCCCCAGCTGATGACATCGGTGGTTAGCAGTGTAGCTGTAGTATTcatca
gi|17 : GAT-ATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TTCAACCAGGCcat
gi|2 : AAGAAAGATATCGCTGGAGACACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAAAGGAAAAAGCCAAGGGCACGGTCAACCAGCAGGCACATCACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCGACGACTGGGAAATGAGTGTAGACCTTGACAGGAAGCTACAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTAAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAAAAGTAGGGACGCGTGGATTC-CCAGCTC-ATTCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAAAATCTCCAAAGTT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACATT----ATC-GC----------------TCCAC-------CCCCACGAGCTTGTCCAGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-GCCCTAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|3 : AGCAGGCACGTAACATTTGTTAAGCAATGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGC-AACGACTGTGAAATGATGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACAGCTAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACAATCTTGTCCAGCAGTGTAGAGAA-AGGGTTCGAAAGTGTAGAGCTATCCCATAGAAGTAGGGGTGCATGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------Gat
gi|4 : TTGGGAGGGAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGTGACGCGTGGATTTTCCAGCTCAATCCATGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGTTGACTAT--GGCTGAGA---AGAG-AGCCAAGTAGCTGGAAGCCTAC-CACTGATG-GGTAAGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGTAGTGTAGCTGTATTATT
gi|5 : GGAGCTATCCTATAGAGGTAGTGAGGCGTGGATTC-CCAGCTCAGT-CCTGTGGAAATTACTCCAAGACATTGGAATGTCAGGACTTCAA-AA-----GATCTGAAGCTGACAGTTAGAAGAATTTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCGGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATT-GC----------------TCTAC-------CACCACGAGCTTGTCCTGGGATTAAATAAGCGAAATAAGTGATGACGGGTGG-CCCCAAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTAATATTcat
gi|6 : cAAGCT-ACACAGAGAGAGAGAGAGG--CCAGTTGGCTCT--GGCTACAATGCAGTG-AACCAACT---TGGCAGCCGATGTA--GACGAGGT-AGTGTCTGATCAGCACT----ACCTGT----------------CCCGC-------GACCTGGAGGATGTACCGAGCATAAGTGGGCGGAACATCCGATGACTGGTGGAGTTTCGGCCGACGACGTCAATGTTAAGCAGTATcat
gi|7 : ttcacgctcttggtt-AA-----GA-----AGCAGGCAGTCTGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--AGCTGAGA---AGAG-ATGCAAGTAGCTGGAAACCTAC-CACTGATG-GGT-AGTGTTTGGCCAATACT----ATC-AC----------------TCCAC-------AACCCGGCACTTGTCCTGGTATTAAAGTA-TGAAACAAGTGATGACAGGTGG-CCCCCAGCTGATGACATCACTGGTTAGCAGTGTAGCTGTATTtccagtatctacacatcggtataaaatacttacgaaactttgctattatatgtccat
gi|8 : acGGAAATTGCTCCAAGACATAGGAATGTCAGAACTTCAA-AA-----G--------CTTGCAGTCGGAAGAATCCCCAAAGCT-GCA------GAAA-AGAGA-TCCAGCTGGCTAT--GGCTGAGA---AGAG-ACGCAAGTAGCTGGAAGCCCAC-TACTTCTG-GG
gi|8 : TTCTGGGATTAAAGGAGCTAAAGAAGTAACAAAGGGTGG-CCTCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGAATAATTattaaaggagctaaagaagtaacaaagggtggcctccagctgatgacatcagtggttagcagtgtagctgaataattca
gi|9 : ggaaattgctccaagacataggaatgtcagaacttcaaaagcttgcagtcggaagaatccccaaagctgcagaaaagagatccagctggctatggctgagaagagacgcaagtagctggaagcccactacGGAAGAATCTCCAAAACT-GCA------GAAA-AGAGT-TCAAGTTGGCTAT--TGCTTAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGTTG-GGT-AATGTTTGGCCAACACT----ATC-GC----------------TCCAT-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGA-CCCCCAGTTGATGACATCAGTAGTTAGCAGTGTAGCTGTATTATTca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTACGCCACAGTTAATCAACTTGGCAGCCGACGTAGATGAGGTAGTGTGTGATCACCACTACCTGTCCC
Alignments
lowQualScore : 111 1 2222 1 11111 11111 111111 111 2222222222222222222 1111111
lowQualScore : 1 1 1 0 1 6 777 3 0 3 1 1111 3 0 3 6 2 8 0 5 5 22222 22222 3 000000 4 4 55 111 4 4 4 4 8888 9999999999999999999 3333333 0 5 3
lowQualScore : . . . . . . ... . . . . .... . . . . . . . . . ..... ..... . ...... . . .. ... . . . . .... ................... ....... . . .
lowQualScore : 0 0 0 7 0 7 555 2 0 2 2 2222 2 0 2 7 5 0 8 0 0 55555 55555 6 555555 0 0 55 000 4 0 0 4 5555 3333333333333333333 0000000 7 7 3
consensus : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
Reference ( family-1442 ) : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|1 : AAGGAAGATATTGCTGGAGTCACGACCAAGTTCTCCGAGAAACGACAGACGTTCTTGAGAGGGAATGGAAAAAGTCCAGGGCACGGTCAACCAGCAGGCACATTACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATTTTGAATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTAACAGGAAGTTGCAGTTTCC---AAGCATCGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTCAACAA----CTTGCATGA-AACTGATGATTGTGGAACTGACGGTGCCTCGGGAGGAAAGA-TGCAACCAGGCAAATGAGAAGAAGAGAACTAAGTACGACGATCTTGTCCAGCAATGTAAAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGAAGGGACGCGTGGATTC-CATGCTCAATTCCAGTGTAAATTACTCCAAGACATCGGAATGCCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAATAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGACTAT--GGCTGAGA---AGAG-AGGCAAGTAGTTGGACGCCTAC-CACTGATG-GGA-AGTGTTCGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGATTGTCCTGGGAGTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATCACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|10 : GTGGACCTTAAGAGGCAGCAGACGTTTCCGTCAGAAATTG-CCATCACCAGACTCAGACCAGAT---GTTCTGTTTCTAACAAGGAGC--ACAAAACAACTCATAATTCTGGAACTTACATTGCCATGGGAGGAGAGAATG-AAGGAAGCTCACAAGAGGAAGAAAACCAAATAca
gi|11 : AAAGCCAGCA------GAGA-AG-GCATTCAGTTGTCTGTTGGGC-AAGAT--AGAACAGG--AG-AGATGGAAGCTAGC-CACTTAGG-GGT-AGTGATTAGCCATCACT----ACC-AA----------------TCCAC-------C-----------GTCCTTGGCATAAAGGATAGAAACACTTACTGATGGATTG-TGCCCAGCTGATG
gi|12 : gctcagTAGCTTGAAGTCCAC-TACTGATG-TTT-GGTGTTTGGCCAACACTATCCATCTGCACCCCCCCCCCCCCTTCCCACACACACACACC-CGAGCTTGTCCTGGGATTAAATGAACCAAACAAGTGGTGACGGGTGG-TCC
gi|13 : AGTATTAAGACTCCAGTGACGTTCGA-----AACGGGCAGTCAGAATAATTGGGAAAGCC-ACC------GAAA-AAAGC-TCAATTTGGCAAT--GGCTG-GA---Aaaaagtga
gi|14 : ccatccgctctagtctagtccgaaatgcttaGGCCAACACT----TTC-------------------T------------------AGCTTGTCTCTGAATTAAACGTGCGAA-CAAGTGATGACGAGTAG-CCCC-AACTGATGACATCAGTGGTGAGCACTGTAGCTGTATCATT
gi|15 : AGCTTGTCCTGGGATTAAAGGAGCGAAACATGTGATGACGGGTAG-CCCCCAGCTGATGACATCGGTGGTTAGCAGTGTAGCTGTAGTATTcatca
gi|17 : GAT-ATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TTCAACCAGGCcat
gi|2 : AAGAAAGATATCGCTGGAGACACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAAAGGAAAAAGCCAAGGGCACGGTCAACCAGCAGGCACATCACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCGACGACTGGGAAATGAGTGTAGACCTTGACAGGAAGCTACAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTAAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAAAAGTAGGGACGCGTGGATTC-CCAGCTC-ATTCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAAAATCTCCAAAGTT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACATT----ATC-GC----------------TCCAC-------CCCCACGAGCTTGTCCAGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-GCCCTAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|3 : AGCAGGCACGTAACATTTGTTAAGCAATGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGC-AACGACTGTGAAATGATGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACAGCTAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACAATCTTGTCCAGCAGTGTAGAGAA-AGGGTTCGAAAGTGTAGAGCTATCCCATAGAAGTAGGGGTGCATGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------Gat
gi|4 : TTGGGAGGGAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGTGACGCGTGGATTTTCCAGCTCAATCCATGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGTTGACTAT--GGCTGAGA---AGAG-AGCCAAGTAGCTGGAAGCCTAC-CACTGATG-GGTAAGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGTAGTGTAGCTGTATTATT
gi|5 : GGAGCTATCCTATAGAGGTAGTGAGGCGTGGATTC-CCAGCTCAGTCC-TGTGGAAATTACTCCAAGACATTGGAATGTCAGGACTTCAA-AA-----GATCTGAAGCTGACAGTTAGAAGAATTTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCGGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATT-GC----------------TCTAC-------CACCACGAGCTTGTCCTGGGATTAAATAAGCGAAATAAGTGATGACGGGTGG-CCCCAAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTAATATTcat
gi|6 : cAAGCT-ACACAGAGAGAGAGAGAGG--CCAGTTGGCTCT--GGCTACAATGCAGTG-AACCAACT---TGGCAGCCGATGTA--GACGAGGT-AGTGTCTGATCAGCACT----ACCTGT----------------CCCGC-------GACCTGGAGGATGTACCGAGCATAAGTGGGCGGAACATCCGATGACTGGTGGAGTTTCGGCCGACGACGTCAATGTTAAGCAGTATcat
gi|7 : ttcacgctcttggtt-AA-----GA-----AGCAGGCAGTCTGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--AGCTGAGA---AGAG-ATGCAAGTAGCTGGAAACCTAC-CACTGATG-GGT-AGTGTTTGGCCAATACT----ATC-AC----------------TCCAC-------AACCCGGCACTTGTCCTGGTATTAAAGTA-TGAAACAAGTGATGACAGGTGG-CCCCCAGCTGATGACATCACTGGTTAGCAGTGTAGCTGTATTtccagtatctacacatcggtataaaatacttacgaaactttgctattatatgtccat
gi|8 : acGGAAATTGCTCCAAGACATAGGAATGTCAGAACTTCAA-AA-----G--------CTTGCAGTCGGAAGAATCCCCAAAGCT-GCA------GAAA-AGAGA-TCCAGCTGGCTAT--GGCTGAGA---AGAG-ACGCAAGTAGCTGGAAGCCCAC-TACTTCTG-GG
gi|8 : TTCTGGGATTAAAGGAGCTAAAGAAGTAACAAAGGGTGG-CCTCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGAATAATTattaaaggagctaaagaagtaacaaagggtggcctccagctgatgacatcagtggttagcagtgtagctgaataattca
gi|9 : ggaaattgctccaagacataggaatgtcagaacttcaaaagcttgcagtcggaagaatccccaaagctgcagaaaagagatccagctggctatggctgagaagagacgcaagtagctggaagcccactacGGAAGAATCTCCAAAACT-GCA------GAAA-AGAGT-TCAAGTTGGCTAT--TGCTTAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGTTG-GGT-AATGTTTGGCCAACACT----ATC-GC----------------TCCAT-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGA-CCCCCAGTTGATGACATCAGTAGTTAGCAGTGTAGCTGTATTATTca
blockSeqs : A A A C C GTC T C A T GGAG T C A A G T C T CGTTC TCTGA A CAGAGA G A TG TGC C G A A ATCC TGCACCCCCCCCCCCCCTT ACACACA A A
blockSeqs : A . . T . A A . T . G . G . C . . . . . . . . T . . . . . TGT . A .
blockSeqs : . . . . T . . . G . . . A . . . . . . . . . . . . . . AA . A .
blockSeqs : . . . . . . . . . . . . . . . . . . GC . T .
blockSeqs : . . . . . . . . . . . . . . . GC . C .
blockSeqs : . . . . . . . . . . . . . . GC . A .
blockSeqs : . . . . . . . . . . . . . . AC . . .
blockSeqs : . . . . . . . . . . . GC . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons :
originalCons : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
finalCons : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTACGCCACAGTTAATCAACTTGGCAGCCGACGTAGATGAGGTAGTGTGTGATCACCACTACCTGTCCC
Alignments
lowQualScore : 111 1 2222 1 11111 11111 111111 111 2222222222222222222 1111111
lowQualScore : 1 1 1 0 1 6 777 3 0 3 1 1111 3 0 3 6 2 8 0 5 5 22222 22222 3 000000 4 4 55 111 4 4 4 4 8888 9999999999999999999 3333333 0 5 3
lowQualScore : . . . . . . ... . . . . .... . . . . . . . . . ..... ..... . ...... . . .. ... . . . . .... ................... ....... . . .
lowQualScore : 0 0 0 7 0 7 555 2 0 2 2 2222 2 0 2 7 5 0 8 0 0 55555 55555 6 555555 0 0 55 000 4 0 0 4 5555 3333333333333333333 0000000 7 7 3
consensus : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
Reference ( family-1442 ) : AAGGAAGATATCGCTGGAGNCACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAANGGAAAAAGCCNAGGGCACGGTCAACCAGCAGGCACGTNACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGGGACGCGTGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTCGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|1 : AAGGAAGATATTGCTGGAGTCACGACCAAGTTCTCCGAGAAACGACAGACGTTCTTGAGAGGGAATGGAAAAAGTCCAGGGCACGGTCAACCAGCAGGCACATTACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATTTTGAATGGTGCCAACGACTGGGAAATGAGGGTAGACCTTAACAGGAAGTTGCAGTTTCC---AAGCATCGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTCAACAA----CTTGCATGA-AACTGATGATTGTGGAACTGACGGTGCCTCGGGAGGAAAGA-TGCAACCAGGCAAATGAGAAGAAGAGAACTAAGTACGACGATCTTGTCCAGCAATGTAAAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGAAGGGACGCGTGGATTC-CATGCTCAATTCCAGTGTAAATTACTCCAAGACATCGGAATGCCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAATAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGACTAT--GGCTGAGA---AGAG-AGGCAAGTAGTTGGACGCCTAC-CACTGATG-GGA-AGTGTTCGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGATTGTCCTGGGAGTAAAGGAGCGAAACAAGTGATGACGGGTGG-CCCCCAGCTGATCACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|10 : GTGGACCTTAAGAGGCAGCAGACGTTTCCGTCAGAAATTG-CCATCACCAGACTCAGACCAGAT---GTTCTGTTTCTAACAAGGAGC--ACAAAACAACTCATAATTCTGGAACTTACATTGCCATGGGAGGAGAGAATG-AAGGAAGCTCACAAGAGGAAGAAAACCAAATAca
gi|11 : AAAGCCAGCA------GAGA-AG-GCATTCAGTTGTCTGTTGGGC-AAGAT--AGAACAGG--AG-AGATGGAAGCTAGC-CACTTAGG-GGT-AGTGATTAGCCATCACT----ACC-AA----------------TCCAC-------C-----------GTCCTTGGCATAAAGGATAGAAACACTTACTGATGGATTG-TGCCCAGCTGATG
gi|12 : gctcagTAGCTTGAAGTCCAC-TACTGATG-TTT-GGTGTTTGGCCAACACTATCCATCTGCACCCCCCCCCCCCCTTCCCACACACACACACC-CGAGCTTGTCCTGGGATTAAATGAACCAAACAAGTGGTGACGGGTGG-TCC
gi|13 : AGTATTAAGACTCCAGTGACGTTCGA-----AACGGGCAGTCAGAATAATTGGGAAAGCC-ACC------GAAA-AAAGC-TCAATTTGGCAAT--GGCTG-GA---Aaaaagtga
gi|14 : ccatccgctctagtctagtccgaaatgcttaGGCCAACACT----TTC-------------------T------------------AGCTTGTCTCTGAATTAAACGTGCGAA-CAAGTGATGACGAGTAG-CCCC-AACTGATGACATCAGTGGTGAGCACTGTAGCTGTATCATT
gi|15 : AGCTTGTCCTGGGATTAAAGGAGCGAAACATGTGATGACGGGTAG-CCCCCAGCTGATGACATCGGTGGTTAGCAGTGTAGCTGTAGTATTcatca
gi|17 : GAT-ATTGTGGAACTGACGGTGCCTTGGGAGGAAAGA-TTCAACCAGGCcat
gi|2 : AAGAAAGATATCGCTGGAGACACGACCAAGTTCTCCGAGAAACGGCAGACGTTCTTGAGAGGGAAAGGAAAAAGCCAAGGGCACGGTCAACCAGCAGGCACATCACATTTGTTAAGCAAGGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGCCGACGACTGGGAAATGAGTGTAGACCTTGACAGGAAGCTACAGTTTCC---AAGCATTGTCCAT-ACAACACTACGGCCAGATATTGTTCTGCTTTAAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAAAAGTAGGGACGCGTGGATTC-CCAGCTC-ATTCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAAAATCTCCAAAGTT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACATT----ATC-GC----------------TCCAC-------CCCCACGAGCTTGTCCAGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-GCCCTAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTATTATT
gi|3 : AGCAGGCACGTAACATTTGTTAAGCAATGTCAAGACAAGAAAGCAACACATTCAAAACAGAAAGCTAGCATATTGGATGGTGC-AACGACTGTGAAATGATGGTAGACCTTGACAGGAAGCTGCAGTTTCC---AAGCATTGTCCAT-ACAACACTACAGCTAGATATTGTTCTGCTTTTAACAA----CTTGCAAGA-AACTGATGATTGTGGAACTGATGGTGCCTTGGGAGGAAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACGACAATCTTGTCCAGCAGTGTAGAGAA-AGGGTTCGAAAGTGTAGAGCTATCCCATAGAAGTAGGGGTGCATGGATTC-CCAGCTCAATCCCTGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------Gat
gi|4 : TTGGGAGGGAAGA-TGCAACCAGGCAAATGAGAGGAAGAGAACCAAGTACAACGATCTTGTCCAGCAGTGTAGAGAAGAGGGTTGGAAAGTGTGGAGCTATCCCATAGAAGTAGTGACGCGTGGATTTTCCAGCTCAATCCATGTGGAAATTACTCCAAGACATCGGAATGTCAGGACTTCAG-AA-----GA-----AGCTGGCAGTTGGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGTTGACTAT--GGCTGAGA---AGAG-AGCCAAGTAGCTGGAAGCCTAC-CACTGATG-GGTAAGTGTTTGGCCAACACT----ATC-GC----------------TCCAC-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGG-CCCCCAGCTGATGACATCAGTGGTTAGTAGTGTAGCTGTATTATT
gi|5 : GGAGCTATCCTATAGAGGTAGTGAGGCGTGGATTC-CCAGCTCAGTCC-TGTGGAAATTACTCCAAGACATTGGAATGTCAGGACTTCAA-AA-----GATCTGAAGCTGACAGTTAGAAGAATTTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--GGCTGAGA---AGAG-AGGCAAGTAGCGGGAAGCCTAC-CACTGATG-GGT-AGTGTTTGGCCAACACT----ATT-GC----------------TCTAC-------CACCACGAGCTTGTCCTGGGATTAAATAAGCGAAATAAGTGATGACGGGTGG-CCCCAAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGTAATATTcat
gi|6 : cAAGCT-ACACAGAGAGAGAGAGAGG--CCAGTTGGCTCT--GGCTACAATGCAGTG-AACCAACT---TGGCAGCCGATGTA--GACGAGGT-AGTGTCTGATCAGCACT----ACCTGT----------------CCCGC-------GACCTGGAGGATGTACCGAGCATAAGTGGGCGGAACATCCGATGACTGGTGGAGTTTCGGCCGACGACGTCAATGTTAAGCAGTATcat
gi|7 : ttcacgctcttggtt-AA-----GA-----AGCAGGCAGTCTGAAGAATCTCCAAAGCT-GCA------GAAA-AGAGC-TCCAGCTGGCTAT--AGCTGAGA---AGAG-ATGCAAGTAGCTGGAAACCTAC-CACTGATG-GGT-AGTGTTTGGCCAATACT----ATC-AC----------------TCCAC-------AACCCGGCACTTGTCCTGGTATTAAAGTA-TGAAACAAGTGATGACAGGTGG-CCCCCAGCTGATGACATCACTGGTTAGCAGTGTAGCTGTATTtccagtatctacacatcggtataaaatacttacgaaactttgctattatatgtccat
gi|8 : acGGAAATTGCTCCAAGACATAGGAATGTCAGAACTTCAA-AA-----G--------CTTGCAGTCGGAAGAATCCCCAAAGCT-GCA------GAAA-AGAGA-TCCAGCTGGCTAT--GGCTGAGA---AGAG-ACGCAAGTAGCTGGAAGCCCAC-TACTTCTG-GG
gi|8 : TTCTGGGATTAAAGGAGCTAAAGAAGTAACAAAGGGTGG-CCTCCAGCTGATGACATCAGTGGTTAGCAGTGTAGCTGAATAATTattaaaggagctaaagaagtaacaaagggtggcctccagctgatgacatcagtggttagcagtgtagctgaataattca
gi|9 : ggaaattgctccaagacataggaatgtcagaacttcaaaagcttgcagtcggaagaatccccaaagctgcagaaaagagatccagctggctatggctgagaagagacgcaagtagctggaagcccactacGGAAGAATCTCCAAAACT-GCA------GAAA-AGAGT-TCAAGTTGGCTAT--TGCTTAGA---AGAG-AGGCAAGTAGCTGGAAGCCTAC-CACTGTTG-GGT-AATGTTTGGCCAACACT----ATC-GC----------------TCCAT-------CACCACGAGCTTGTCCTGGGATTAAAGGAGCGAAACAAGTGATGACTGGTGA-CCCCCAGTTGATGACATCAGTAGTTAGCAGTGTAGCTGTATTATTca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTACGCCACAGTTAATCAACTTGGCAGCCGACGTAGATGAGGTAGTGTGTGATCACCACTACCTGTCCC