lowQualScore : 1111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 0000000000000000000000000000000000 11 2222 5555555555555555555555555 2222222222222222222 111 1 1111 222222222 2 111 555555 1 111111 666666666666666666 11 11 1 22 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222 1 1 111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2222 111 11 33 11 11 7777777777777777777777777777777777777777777777777 9999999999999999999999999 33333 11
lowQualScore : 22 5 0 1 1111111111111111111111111111111111 66 1111 5555555555555555555555555 2 7 0 9999999999999999999 555 88 2 0 0 9 5555 5 3 1 666666666 9 0 000 000000 8 0 3 999 0 222222 333333333333333333 77 0 11 11 0 0 3 33 99 6 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 8 11111 3 6 0 1 8 8888 8 444 1 6666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0000 55 777 1 2 88 4 2 66 33 2 00 2 11 44 3 9999999999999999999999999999999999999999999999999 6666666666666666666666666 33333 0 33 7
lowQualScore : .. . . . .................................. .. .... ......................... . . . ................... ... .. . . . . .... . . . ......... . . ... ...... . . . ... . ...... .................. .. . .. .. . . . .. .. . .............................................................................................................................................. . . ..... . . . . . .... . ... . .... ................................................................................................................................... .... .. ... . . .. . . .. .. . .. . .. .. . ................................................. ......................... ..... . .. .
lowQualScore : 00 0 7 0 8888888888888888888888888888888888 55 2222 3333333333333333333333333 2 3 3 0000000000000000000 222 55 8 5 3 9 0000 0 5 0 777777777 2 8 222 888888 0 8 8 888 4 000000 444444444444444444 22 8 00 00 8 4 2 77 22 7 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 0 22222 0 0 0 0 0 6666 0 000 8 0000 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0000 00 555 2 2 33 7 5 55 88 2 00 5 00 22 0 3333333333333333333333333333333333333333333333333 7777777777777777777777777 00000 7 00 7
consensus : NNNATGAGGGATGATATAAAAATACGTGGA------------CTT-------G-----------AAAACNGTTCGGACTATT----TCAT-----------------------T-ANATATTATAN-ATTC-TTGG-------AAGTATT-TCATCTCCGCGTTNACTGATAAAAACGTTATGGTCGTTTTCGA---------TACCCCTGTTTTAC--AAAC--GCGGA-GCACGGTCTAAATG-ACGCCACTTTTA--CGTAAG--CAC-CCA-C-TATT--AAANTCACTATTTC--TCC--ATTAAATGNGAACAAAAATCCGCCAAA--GT-TC--GT-TCTG-----CCGA--T---AT---ATG--CG-TTG--GTT----------GTT--TTCG----------NACGGAGTCCAAGAAA--CACGNAC---A-TT--T--GCGTCATCGGC--TC---A------------GTNATA-AAG---TTTTGCGTAAATCTCGGTATGACCCCAA-CGCAGACAAT-GAAA-AA---GATGAAGGAGACGAATATGAAA---A-AAAAGTCCGAGTCTGTNGC----T--TAT-------TTT---AGTGGCACAAACGNTTTNAAGA-----------------TG----GAT-AN-----AAAC--AT-GACA-G--ATCA----ATTATTN---GGCNAGCGTTGG---TGACGTCAGTT--GAANAATTTGTTATCCAANACAGGC--GCGTAACAATACGAGAGATCGCGGAGGAAGNTNGAGTGAGTTACGGTTNCGCATGGACTAT--------TTTACT---AGA---------AAT-AA-TTTGC---A---TTTCCTCAGGTATTTCGTTA--TT-A-------------A---A-TGAATT----NATGCATTGATAATAGANAGGTTAANACAT
Reference ( gi|4 ) : AATATGAGAAATTATACAAAAATATGTGGA------------TTT-------G-----------AAAATGGTTCGGACTATT----TCAT-----------------------T-ATATATTATCA-ATTT-TTGA-------AAGTATT-TCATCTTTGTGTTCACTGATGAAAAAGTAATAGTTGTTTTTGA---------TACCTCTGATTTAT--AAAC--AGGCA-GCACGGTCTAAATG-ATGCCATTTTTA--CATAAG---AC-C-----TATA--AAATTCACTATTTC--TCC--ATTAAATGTGAACAAAAAAACGCCAAA--GT-TC--AT-TCTG-----CTGA--T---AT---ATG--CG-TTGCAGTT----------GTT--TCCA----------CACAGTATCCAAGAAA--CACGAAC-TTA-TT-CTTGGCCTCATTGGC--TC---A------------GTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAA-AA---GATGAAAGAGACGAATATGAAA---A-AAAAATCCGTGTCTGTAGC----T--TAC-------TT----AGTGGCACATACACTTTTAAGA-----------------TG----GAT-AG-----AAAT-TATGGACA----ATCA----ATTATTG---GGCCAGCGTTGG---TGACATCAGTT--GAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---A---CTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACAT
gi|14 : ATGAGGGATGATACGAAAATATGTGGA------------CTTATATCTTG-----------AAAACAGGTCGGACTATT----TCAT-----------------------TCAAAT-TTATCCTACTG-CTGACAGGTTTAAATATTGTAAATTCTCTGTTTACAGAT-AAAAAGTTATGGTCATTTTTGA---------TACCCCTGTTTTAC--A
gi|15 : ATAAAAATACGTAGACTTTTGTTATATCTT-------G-----------AAAACTGTTCAGACTATT----TCAT-----------------------TCATAT-TTTTCC-CTAT-TTGG-------AAGTATT---ATCTCCGAGTTAACTGATAAAAACATTATAGTCGTTTTTGA---------TACCCCTGTTTTAC--AA
gi|12 : tgATAAAAACACGTGGA------------TTT-------GTTTATATCTTGAAAACACTTCGGACTATTGCATTCATATTTTTCCTACTGGTAGCTCGTTT-ATATATTATAG-ATTCACTG--------AAGTAGT-TTATCTCTGTGTTTACCGATGAAA
gi|18 : ggatg------------TTT-------G-----------AAAACCGTTCGGACAATT----TCAT-----------------------T-tgtttatgtccgttaccaatatcactgttttgc
gi|1 : gggatgataaataattagttggactttaagttttgttatatT-----------------------T-AAATATTGTAA-ATTC-TCTA-------AAGTATT-T-ATATCCGCGTTTAAGGGTAAAAACGTTATGGTCGTTTTCAA---------TACCCCTGTTTTAC--AAAC--GCGGA-GCACGGTTTAAATA-ACGTCACTTTTAAGCA-AAGCCCACTC-----TATT--AATTTCACTTTTTT--TACTTATTAAATG-GAA--AAAATCCGTAAAA--GT-TCGTAT-GCTGGTACACTGACGT---ATTTTATGACCA-TTGATGTTTTGTCCGAACGTTAATCCGTGCCTTTTTTCACAGAGTCCAAGAAA--CACTTAC-ATAATTACT--GCGTCATCGAA--TCCACA------------GAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAA-AA---GATGAAGGAGACGAATATGAAT---A-CAAA-TACGAGT-TGTTCA----T--TTC-------TTTTCAAATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG----GACGAC-----AAACGTATAGACAGACGATCA----TTTATTT---GACCAGCGTTGG---TGGCGGCAGCT--GAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATA---TTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATATca
gi|5 : T-----------------------T-ACA-ATTATAA-ATTC-TTAG-------ACGAATT-TCATCTCCGCGTTGATTGATCAAAATATTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAAT--AAAC--GCGGA-GCACGGTCGAAATG-ACGCCTCTTTGA--TGCCAGGTCAC-C-----T-TACTAAATTCACTATTTC--TCC--CTTCAATCTGAACAAAAATCTATCACA--GT-TC--G--TCTG-----CTGA--T---Aggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|10 : ttgT-----------------------T-ATATATTGTAC-ATTC-TTGG-------AAATATT-TCATCTGCGCGTTACCTAATACAAAA-TA-TCGACGTTACCAA---------TACCTCTG--TTATGCAAACTCAG--A-GCACGAGCTAA-TGCACGTTAATTTTA--CGTAAG---AC-CCATCCTATT--AAAATCACTATTTC--TCC--ATTAAATGTGAATAAAAATCCACCAAA--AT-CT--ATCTCTG-----CTGA--T---Agaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|7 : tCTGACAAAACTGTTATGGTCGTTTTCGA---------AACC---GTTTTAC--CAAC-----CATGT-TGGTCTTAATG-ACGCCAATTTTA--CGTTAG---GT-C-----TAT--------C-CTGTTATAATCC--ATTAAATGGAAACAATAATCCGCCAAA--GT-TC--A--TCGG-----CAAA--TAGAAT---A-A--CGCTTG--GT-----------GTT--TTGT----------GGCGTTAT---AGGAATTCACGAAA---A------------CAT--GC--TC---A------------GTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAA-AA---GATAAACG-GATGAATTTG-AA---A-ACAAGTCCGAGTCgaatgacgccatttataacggtagatgctttgttcgaacgtca
gi|6 : gaatattataaaactatttttatA-GCACGGTCTAAGCG-CCACCACATTTA--CGTATG---AC-CCACCGTATT--AAAATCACTATTTC--TCC--ATTATA-GGGAACAAAAATCCGCCAGC--GT-TT--G--TCTT-----CCGA--T---Ag
gi|5 : AAAACATCAACCCGTGTC--AT-TTT------------C---AT---ATG--CA-GTGCAGTT----------GTT--TTCA----------AACAGAGTCTATGAAA--CATGGACATGA-TT-AT-AGCGTCATTGGCATTC---ACGGAAACACGTAGTTATA-AC----TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAA-AA---GATGAAGGAGGCAAGGATGAGT---A-AAAA---CACG-----AGA----T--TGT-------CA----AGTTACACAAGC-CTTTTAA-A-----------------TATCTTGGT-AG-----A--------GGCA----ATCAACTGATTATTT---GGCAGGCGTTGG---CGTCGTCgaatgacgtcttttataaccgttgatgttttgtccgaacgtcaatccgtgccgtttaaatagaaacactgacatcggaaaccagagaaacacgctcagtaagaaaatgttgccttaagctcggtatgatttcaacgcagacaatgacaaatatgacgaaagagaatgtgaaaacaaatacgagtcggtcgcttctattcaagtagcacaaccgttttaaagac
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttGC--TC---A------------GTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACA-AATATGACGAAAGA---GAATGTG-AA---A-ACAAATACGAGTCGGTCGC----TTCTAT-------TCA---AGTAGCACA-ACCGTTTTAAg
gi|11 : agcacggtctaagcgccaccacatttacgtatgacccaccgtattaaaatcactatttctccattatagggaacaaaaatccgccagcgtttgtcttccgatagaatgacgtcttttataaccgttgatgttttgtccgaacgtcaatccgtgccgtttaaatagaaacactgacatcggaaaccagagaaacacGC--AC---A------------ATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATAT---GATACAAGAATCAGATAT----------AAAGCCAG---CTGTAACGAGAT--CACTGGGTTTTT----AATGGCACAAACGGTTCAAAGA-----------------TGGAA-GAT-AAGACATAAAT-GAT-GACACGG-GTC-----ATGGTCGCAAGG-CAACACTGGATATGACGTCAGTTGCGAAAAagac
gi|9 : actgatcattcagaacaccGAGAT-AATATGAAACAAACAAAAATC-G-GTC----GC----T--TAT-------TTTCT-A-TGGCACGAACGTTTT---------------------------------------AAA------GACA----AACA----ATTATTG---GGCAAGCATTGG---TGATATCATTT--AAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------
gi|3 : gaaacacggacatattccaattgatgatttcagcgcaattcacaaacacacacttagttATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---A---CTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATcatagga
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGC---AATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|13 ): ACTTTTCACCTACTGGTGATAGTAGAATGTAATTTTGTGCATTAATTCAAGATATATTAAATTAATATGTGTTTAAATGTACAATAAATTGGACATACCGCTCATAGATAATTTCAAAGTCCACAACTTTTTATCACCCCTCGTATGTCTGTT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Unaligned ( gi|17 ): TTAATATTGCAATTGTTAAATTTGCAATAAATGGAGCATACTGCTATAAAGATATAACAAAATATATTTTTATCATCCCTCGTGTATAGTTAAAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 99999999999999999999999999 1111 44444444444444444444444 111 2222222222222222 111 111 222222222 111 6666666666666 33 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 22222 444444444444444444444444 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 66666666666666666666666666 333 11 666666666666666666666 22222
lowQualScore : 11 77777777777777777777777777 1 7777 66666666666666666666666 5 1 2 333 1111111111111111 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 1111111111111 1 99 7 00 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 6 5555 3 6 6 6 1 1 1 1 5 66666 1 6 1 333333333333333333333333 1 1 777777777777777777777777777777777777777777777777777777777777 1 1 444 1 1 22 1 1 1 1 99999999 55555555555555555555555555 3 555 2 33 555555555555555555555 22222 55 1
lowQualScore : .. .......................... . .... ....................... . . . ... ................ .. ... . . . . .. ... ......... . . ... . . . ............. . .. . .. . .............................................................................................................................................................. . . .... . . . . . . . . . ..... . . . ........................ . . ............................................................ . . ... . . .. . . . . ........ .......................... . ... . .. ..................... ..... .. .
lowQualScore : 55 00000000000000000000000000 0 0000 22222222222222222222222 0 0 3 666 3333333333333333 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 3333333333333 0 22 5 33 8 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 7 3333 7 7 7 7 7 4 9 3 7 77777 7 7 0 333333333333333333333333 0 0 999999999999999999999999999999999999999999999999999999999999 0 0 000 0 0 00 4 0 0 0 00000000 22222222222222222222222222 0 000 0 88 555555555555555555555 22222 00 0
consensus : NNNATGAGGGATGATACGAAAATACGTGGACTTGT-T----CTT------------GAAAACGGTTCGGACTATT----TCAT-----------------------T-ANATATTAT-ANATTC-----TTGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCA---CGGTCTAAATG-ACGCCACTTTTACGTAAG---ACCCATCC--TATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGTTCG--TCTGCTGAT---A-------------TATGACCG-TTGCAGTTGTTTTGTCCGAACGT---------------------GAGTCCA------------AGAAA--CACGGAC--AT-A---TT-T-GCG----TCATCG------GC--T---CA------------GTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC-CGAGTCTG-TCGC----T--TA------TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAA--TTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNATGAGGGATGATATAAAAATACGTGGA-----------CTT------------GAAAACNGTTCGGACTATT----TCAT-----------------------T-ANATATTAT-ANATTC-----TTGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCA---CGGTCTAAATG-ACGCCACTTTTACGTAAG--CACCCA--C--TATTAAANTCACTATTTCTCC--ATTAAATGNGAACAAAAATCCGCCAAAGTTCGT-TCTGCCGAT---A-------------TATG--CG-TTG--GTTGTTTT---CGNACG----------------------GAGTCCA------------AGAAA--CACGNAC--AT-----TT---GCG----TCATCG------GC--T---CA------------GTNATA-AAG---TTTTGCGTAAATCTCGGTATGACCCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC-CGAGTCTG-TNGC----T--TA------TTTT--A-GTGGCACAAACGNTTTNAAGA-----------------TG--------GAT-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCNAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAANACAGGC--GCGTAACAATACGAGAGATCGCGGAGGAAGNTNGAGTGAGTTACGGTTNCGCATGGACTAT--------TTTACT---AGA---------AAT--AA--TTTGC---ATTTCCTCAGGTATTTCGTTA--TT-A-------------A---A-TGAATT----NATGCATTGATAATAGANAGGTTAANACAT
gi|1 : T-----------------------T-AAATATTGT-AAATTC-----TCTA-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAAT---------ACCCCTGTTTTACAAACGCGGAGCA---CGGTTTAAATA-ACGTCACTTTTAAGCAAA---GCCCACTC--TATTAATTTCACTTTTTTTACTTATTAAATG-GA--AAAAATCCGTAAAAGTTCG--TATGCTGGT---ACACTGACGTATTTTATGACCA-TTG--A-TGTTTTGTCCGAACGTTAATCCGTGCCTTTTTTCACAGAGTCCA------------AGAAA--CACTTAC--ATAATTACT---GCG----TCATCG------AA--TCCACA------------GAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAAAA-GATGAAGGAGACGAATATGAATACAA-A-TA-CGAGT-TGTTCAT----T--TC------TTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGAT--GAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : T-----------------------T-ATATATTGT-ACATTC-----TTGG-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAAT---------ACCTCTGTTATGCAAACTCAGAGCA---CGAGCTAA-TGCACGTTAATTTTACGTAAG---ACCCATCC--TATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATCTCTGCTGAT---A-------------ggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : t------GC--A---CA------------ATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT------AA-AGCC---AG-CTG-TAACGAGAT--CACTGGGTTTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTGgaatgacgccatttataacggtagatgctttgttcgaacgtca
gi|12 : actgatcattcagaacaccGGATGATA--AAAACACGTGGATTTGTTTATATCTT------------GAAAACACTTCGGACTATTGCATTCATATTTTTCCTACTGGTAGCTCGTTT-ATATATTAT-AGATTC-----ACTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAAT---------ATCACTGTTTTGCcgaaaa
gi|14 : ATGAGGGATGATACGAAAATATGTGGACTTATAT----CTT------------GAAAACAGGTCGGACTATT----TCAT-----------------------TCAAAT-TTATCCTACTG-----CTGACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGAT---------ACCCCTGTTTTACA
gi|15 : ATAAAAATACGTAGA-----------CTTTTGTTATATCTTGAAAACTGTTCAGACTATT----TCAT-----------------------T--CATATT-T----TTCCCTATTTGG-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGAT---------ACCCCTGTTTTACAA
gi|18 : tgTT------------GAAAACCGTTCGGACAATT----TCAT-----------------------T-
gi|2 : gggatgataaataattagttggactttaagttttgttatattATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT------TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAA--TTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|4 : ATGAGAAATTATACAAAAATATGTGGA-----------TTT------------GAAAATGGTTCGGACTATT----TCAT-----------------------T-ATATATTAT-CAATTT-----TTGA-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGAT---------ACCTCTGATTTATAAACAGGCAGCA---CGGTCTAAATG-ATGCCATTTTTACATAAG---ACC-------TATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGTTCAT-TCTGCTGAT---A-------------TATG--CG-TTGCAGTTGTTTC---CACACA----------------------GTATCCA------------AGAAA--CACGAACTTAT-----TCTTGGCC----TCATTG------GC--T---CA------------GTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAAAA-GATGAAAGAGACGAATATGAAAAAAA-AATC-CGTGTCTG-TAGC----T--TA-------CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAA--TTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|5 : aatT-----------------------T-ACA-ATTAT-AAATTC-----TTAG-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCA---CGGTCGAAATG-ACGCCTCTTTGATGCCAGGTCACC----T--TACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGTTCG--TCTGCTGAT---A-------------
gi|5 : ttg---A-------------TATG--CA-GTGCAGTTGTTTT---CAAACA----------------------GAGTCTA------------TGAAA--CATGGAC--ATGA---TTATAGCG----TCATTG------GCATT---CACGGAAACACGTAGTTATA-AC----TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAAAA-GATGAAGGAGGCAAGGATGAGTAAAA-A--CACGAGATTG-TCA----------------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCgaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcattttcAGCA---CGGTCTAAGCG-CCACCACATTTACGTATG---ACCCA--CCGTATTAAAATCACTATTTCTCC--ATTATA-GGGAACAAAAATCCGCCAGCGTTTG--TCTTCCGAT---AGAATGACGTCTTTTATAACCG-TTG--A-TGTTTTGTCCGAACGT---------------------CAATCCGTGCCGTTTAAATAGAAA--CACTGAC--AT-----------CGGAAACCAGAGAAACACGC--T---CA------------GTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACAAA-TATGACGAAAGAGAATGTGAAAACAA-A-TA-CGAGTCGG-TCGC----TTCTA------TTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGAA---------ACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAG---GTCTATCC--TGTTATAA----------TCC--ATTAAATGGAAACAATAATCCGCCAAAGTTCA--TCGGCAAATAGAA-------------TA-A--CGCTTG--G-TGTTTT----GT--G----------------------GCGTTAT------------AGGAATTCACGAAA--A-------------------CAT--------GC--T---CA------------GTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAAAA-GATAAACG-GATGAATTTG-AAAACA-AGTC-CGAGTCc
gi|9 : gaatattataaaactattGAGAT-AATATGAAACAAACAA----AAATCGG-TCGC----T--TA------TTTT--CTATGGCACGAACGTTTTAAAGA--------------------------------CAAA-C-A--------------------ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------g
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|13 ): ACTTTTCACCTACTGGTGATAGTAGAATGTAATTTTGTGCATTAATTCAAGATATATTAAATTAATATGTGTTTAAATGTACAATAAATTGGACATACCGCTCATAGATAATTTCAAAGTCCACAACTTTTTATCACCCCTCGTATGTCTGTT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Unaligned ( gi|17 ): TTAATATTGCAATTGTTAAATTTGCAATAAATGGAGCATACTGCTATAAAGATATAACAAAATATATTTTTATCATCCCTCGTGTATAGTTAAAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 99999999999999999 111 4444444444444444444444444444444444444444444444444444444 111 111 222222222 111 111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 44444444444 22222222222222 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 22222 444444444 333 11 666666666666666666666 22222
lowQualScore : 11 1 11111111111111111 6 111 9999999999999999999999999999999999999999999999999999999 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 1 1 2 1 1 99 7 1 111 3 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 6 111 1 6 6 6 1 1 1 1 5 66666666666 777 6 1 77777777777777 777777777777777777777777777777777777777777777777777777777777 1 0 444 1 55 1 1 0 99999999 11111 000000000 8 3 1 888 33 555555555555555555555 22222 22 1
lowQualScore : .. . ................. . ... ....................................................... .. ... . . . . .. ... ......... . . ... . . . . . . . . .. . . ... . . ......................................................................................................................................................... . . ... . . . . . . . . . ........... ... . . .............. ............................................................ . . ... . .. . . . ........ ..... ......... . . . ... .. ..................... ..... .. .
lowQualScore : 44 4 88888888888888888 4 000 6666666666666666666666666666666666666666666666666666666 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 0 0 5 0 0 22 2 0 777 7 7 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7 777 0 7 7 7 7 4 9 3 7 77777777777 777 7 0 22222222222222 333333333333333333333333333333333333333333333333333333333333 0 6 000 0 44 4 0 6 00000000 55555 000000000 8 5 0 555 88 555555555555555555555 55555 22 0
consensus : NNNATGAGGGATGATACGAAAATACGTGGACTTT-------GT-TATAT-CTTGAAAACGGTTCGGACTATTTCATT-ACATA---------------------TTAT-ANATTC-----TTG-------G-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGA---------TACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCGT-CTGCTGATA-A-TGACGT--TTT-ATGA--CCGTT-------GCAGTTGTTTTGTCCGAAC-GT---------------------GAGTCCA------------AGAAACACGGACAT-----ATT--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNATGAGGGATGATACGAAAATACGTGGACTT--------GT-T-----CTTGAAAACGGTTCGGACTATTTCATT-ANATA---------------------TTAT-ANATTC-----TTG-------G-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGA---------TACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGACCCATCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCGT-CTGCTGATA-------------T-ATGA--CCGTT-------GCAGTTGTTTTGTCCGAAC-GT---------------------GAGTCCA------------AGAAACACGGACAT-----ATT--T---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
gi|1 : TT-AAATA---------------------TTGT-AAATTC-----TCT-------A-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAA---------TACCCCTGTTTTACAAACGCGGAGCACG---GTTTAAATA-ACGTCACTTTTAAGCAAAGCCCACTCTATTAATTTCACTTTTTTTACTTATTAAATG-GAA--AAAATCCGTAAAAGT---TCGT-ATGCTGGTACACTGACGTATTTT-ATGA--CCATT-------G-A--TGTTTTGTCCGAAC-GTTAATCCGTGCCTTTTTTCACAGAGTCCA------------AGAAACACTTACATA----ATTACT---GCGTCATCGAA--TCCAC------------AGAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAAAA-GATGAAGGAGACGAATATGAATACAA-A-TA--------CGAGT-TGTTCATT--TC--TTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : TT-ATATA---------------------TTGT-ACATTC-----TTG-------G-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAA---------TACCTCTGTTATGCAAACTCAGAGCACG---AGCTAA-TGCACGTTAATTTTACGTAAGACCCATCCTATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATC-T-CTGCTGATA-------------GAATGACGCCATTTATAACGGTAGATGCTTTGTTCGAAC-GT---------------------ggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : tGC--A---C------------AATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT------AA-AGCCAGCTGTAACGAG---A-TCACT--GGGTTTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTGca
gi|12 : actgatcattcagaacaccGGATGATA--AAAACACGTGGATTT--------GT-TTATATCTTGAAAACACTTCGGACTATTGCATT--CATATTTTTCCTACTGGTAGCTCGTTTAT-ATATTA-----TAGATTCACTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAA---------TATCACTGTTTTGCcgaaaa
gi|14 : ATGAGGGATGATACGAAAATATGTGGACTT--------ATAT-----CTTGAAAACAGGTCGGACTATTTCATTCAAAT----------------------TTATCCTACTG-----CTG-------ACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGA---------TACCCCTGTTTTACA
gi|15 : TGATA--AAAATACGTAGACTTTT------GT-TATAT-CTTGAAAACTGTTCAGACTATTTCATT--CATA---------------------TT-T----TTCCCTATTTG-------G-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGA---------TACCCCTGTTTTACAA
gi|18 : GGGATGATAAATAATTAGTTGGACTTTAAGTTTTGT-TATAT-TTTGAAAACCGTTCGGACAATTTCATT-
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|4 : ATGAGAAATTATACAAAAATATGTGGATTT--------G------------AAAATGGTTCGGACTATTTCATT-ATATA---------------------TTAT-CAATTT-----TTG-------A-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGA---------TACCTCTGATTTATAAACAGGCAGCACG---GTCTAAATG-ATGCCATTTTTACATAAGACC-----TATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGT---TCATTCTGCTGATA-------------T-ATG----CGTT-------GCAGTTGTTT---CCACACAGT---------------------A--TCCA------------AGAAACACGAACTT-----ATT--CTTGGCCTCATTGGC--T---C------------AGTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAAAA-GATGAAAGAGACGAATATGAAAAAAA-AATC--------CGTGTCTG-TAGCT--TA---CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|5 : aatTT-ACA-A---------------------TTAT-AAATTC-----TTA-------G-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCACG---GTCGAAATG-ACGCCTCTTTGATGCCAGG-TCACCTTACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGT---TCGT-CTGCTGATAGAATGACGTCATTT-ATAA--CGGTT-------GCAATT
gi|5 : ttgA-------------T-ATG----CAGT-------GCAGTTGTTTT---CAAAC-A----------------------GAGTCTA------------TGAAACATGGACATG----ATTA-TA--GCGTCATTGGCATT---CACGGAAACACGTAGTTAT--AAC---TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAAAA-GATGAAGGAGGCAAGGATGAGTAAAA-A--CA-------CGAGATTG-TCA--------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCcggtgttaaaacatcaacccgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcattttcAGCACG---GTCTAAGCG-CCACCACATTTACGTATGACCCACCGTATTAAAATCACTATTTCTCC--ATTATA-GGGAACAAAAATCCGCCAGCGT---TTGT-CTTCCGATAGAATGACGTCTTTT-ATAA--CCGTT-------G-A--TGTTTTGTCCGAAC-GT---------------------CAATCCGTGCCGTTTAAATAGAAACACTGACATCGGAAACC--A---GAGAAACACGC--T---C------------AGTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACAAA-TATGACGAAAGAGAATGTGAAAACAA-A-TA--------CGAGTCGG-TCGCTTCTA--TTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGA---------AACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAGGTCTATCCTGTTATAATC----------C--ATTAAATGGAAACAATAATCCGCCAAAGT---TCAT-CGGCAAATA-------------GAATAA--CGCTT-------G--G-TGTTTTGT---GGC-GTTATAG----------------GAATTCA------------CGAAA-----ACAT-----------------------GC--T---C------------AGTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAAAA-GATAAACG-GATGAATTTG-AAAACA-AGTC--------CGAGTCc
gi|9 : gaatattataaaactattGAAACACGGACAT-----ATT--g
gi|9 : GAGAT-AATATGAAACAAACAA-----------AAATCGG-TCGCT--TA--TTTT--CTATGGCACGAACGTTTTAAAGA-----------------------------C-AAA--------------------CA----ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------ccaattgatgatttcagcgcaattcacaaacacacacttagttgagataatatgaaacaaacaaaaatcggtcgcttattttctatggcacgaacgttttaaagacaaacaattattgggcaagcattggtgatatcatttaaataatgtgttattcacggcaggcgcgtaacaataccagagctcgcggaggaagtttgagtgatttacagttatggttggcttatcatagga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|13 ): ACTTTTCACCTACTGGTGATAGTAGAATGTAATTTTGTGCATTAATTCAAGATATATTAAATTAATATGTGTTTAAATGTACAATAAATTGGACATACCGCTCATAGATAATTTCAAAGTCCACAACTTTTTATCACCCCTCGTATGTCTGTT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Unaligned ( gi|17 ): TTAATATTGCAATTGTTAAATTTGCAATAAATGGAGCATACTGCTATAAAGATATAACAAAATATATTTTTATCATCCCTCGTGTATAGTTAAAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 333333333333 1 55555555555555555555555555555555555555555555555555555555555 111 111 222222222 111 111 5555555555555555 1111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 44444444444 22222222222222 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 22222 444444444 333 11 666666666666666666666 22222
lowQualScore : 77 2 1 5 888888888888 6 1 3 66666666666666666666666666666666666666666666666666666666666 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 9 1 1 99 7 111 3 6 2222222222222222 6666 1 7777 666 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 6 111 1 6 6 6 1 1 1 1 5 66666666666 777 6 1 77777777777777 777777777777777777777777777777777777777777777777777777777777 1 0 444 1 55 1 1 0 99999999 11111 000000000 8 3 1 888 33 555555555555555555555 22222 22 1
lowQualScore : .. . . . ............ . . . ........................................................... .. ... . . . . .. ... ......... . . ... . . . . . . .. . ... . . ................ .... . .... ... . .................................................................................................... . . ... . . . . . . . . . ........... ... . . .............. ............................................................ . . ... . .. . . . ........ ..... ......... . . . ... .. ..................... ..... .. .
lowQualScore : 00 2 0 2 777777777777 3 2 6 88888888888888888888888888888888888888888888888888888888888 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 3 0 0 22 2 777 7 7 0000000000000000 2222 4 4444 777 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 7 777 0 7 7 7 7 4 9 3 7 77777777777 777 7 0 22222222222222 333333333333333333333333333333333333333333333333333333333333 0 6 000 0 44 4 0 6 00000000 55555 000000000 8 5 0 555 88 555555555555555555555 55555 22 0
consensus : NNNACGAGGGATGATA-AAAAATACGTGGACTTT-------GTT-ATATCTTGAAAACGGTTCGGACTATTTCATTACATA---------------------TTATANATTC-----T-----TG-------G-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCGT-CTGCTGATAGA-A-TGACG--T--TTTATAACCGTTGCAGTTGTTTTGTCCGAAC-GT---------------------GAGTCCA------------AGAAACACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNATGAGGGATGATACGAAAATACGTGGACTTT-------GTT-ATATCTTGAAAACGGTTCGGACTATTTCATTACATA---------------------TTATANATTC-----T-----TG-------G-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCGT-CTGCTGAT--A-A-TGACG--T--TTTATGACCGTTGCAGTTGTTTTGTCCGAAC-GT---------------------GAGTCCA------------AGAAACACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
gi|1 : TTAAATA---------------------TTGTAAATTC-----T-----CT-------A-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTTTAAATA-ACGTCACTTTTAAGCAAAGCCCACTCTATTAATTTCACTTTTTTTACTTATTAAATG-GA--AAAAATCCGTAAAAGT---TCGT-ATGCTGGT--ACACTGACGTAT--TTTATGACCATTG-A--TGTTTTGTCCGAAC-GTTAATCCGTGCCTTTTTTCACAGAGTCCA------------AGAAACACTTACATA----AT--TACT---GCGTCATCGAA--TCCAC------------AGAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAAAA-GATGAAGGAGACGAATATGAATACAA-A-TA--------CGAGT-TGTTCATT--TC--TTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : TTATATA---------------------TTGTACATTC-----T-----TG-------G-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAAT---------ACCTCTGTTATGCAAACTCAGAGCACG---AGCTAA-TGCACGTTAATTTTACGTAAGACCCATCCTATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATC-T-CTGCTGATAGA-A-TGACG--CCATTTATAACGGT---AGATGCTTTGTTCGAAC-GT---------------------ggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : tGC--A---C------------AATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT------AA-AGCCAGCTGTAACGAG---A-TCACT--GGGTTTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTGca
gi|12 : actgatcattcagaacaccGGATGATA--AAAACACGTGGA-TTT-------GTTTATATCTTGAAAACACTTCGGACTATTGCATT-CATATTTTTCCTACTGGTAGCTCGTTTATATATTA-----T-----AGATTCACTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAAT---------ATCACTGTTTTGCcgaaaa
gi|14 : ATGAGGGATGATACGAAAATATGTGGACTT------------ATATCTTGAAAACAGGTCGGACTATTTCATT-CAAA---------------------TT---TATCC-----TACTGCTG-------ACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGAT---------ACCCCTGTTTTACA
gi|15 : TGATA--AAAATACGTAGACTTTT------GTT-ATATCTTGAAAACTGTTCAGACTATTTCATT-CATA---------------------TT-T---TTCCCTATT-----TG-------G-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGAT---------ACCCCTGTTTTACAA
gi|17 : ACGAGGGATGATA--AAAATATAT----TTT-------GTT-ATATCTTTATAGCAGTATGCTCCATTT-ATTGCAAA---------------------TT
gi|18 : ttaatattgcaattgttaGGGATGATAAATAATTAGTTGGACTTTAAGTTTTGTT-ATATTTTGAAAACCGTTCGGACAATTTCATTgtatagttaaaat
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|4 : ATGAGAAATTATACAAAAATATGTGGATTT-------------------GAAAATGGTTCGGACTATTTCATTATATA---------------------TTATCAATTT-----T-----TG-------A-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGAT---------ACCTCTGATTTATAAACAGGCAGCACG---GTCTAAATG-ATGCCATTTTTACATAAGACC-----TATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGT---TCATTCTGCTGAT--A---------------TATG--CGTTGCAGTTGTTT---CCACACAGT---------------------A--TCCA------------AGAAACACGAACTT-----AT--T--CTTGGCCTCATTGGC--T---C------------AGTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAAAA-GATGAAAGAGACGAATATGAAAAAAA-AATC--------CGTGTCTG-TAGCT--TA---CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|5 : aatTTACA-A---------------------TTATAAATTC-----T-----TA-------G-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCACG---GTCGAAATG-ACGCCTCTTTGATGCCAGGTC-ACCTTACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGT---TCGT-CTGCTGATAGA-A-TGACG--TCATTTATAACGGTTGCAATT
gi|5 : ttgTGCAGTTGTTTT---CAAAC-A----------------------GAGTCTA------------TGAAACATGGACATG----ATTAT--A---GCGTCATTGGCATT---CACGGAAACACGTAGTTAT--AAC---TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAAAA-GATGAAGGAGGCAAGGATGAGTAAAA-A--CA-------CGAGATTG-TCA--------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCcggtgttaaaacatcaacccgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcattttcatatgcagAGCACG---GTCTAAGCG-CCACCACATTTACGTATGACCCACCGTATTAAAATCACTATTTCTCC--ATTATA-GGGAACAAAAATCCGCCAGCGT---TTGT-CTTCCGATAGA-A-TGACGTCT--TTTATAACCGTTG-A--TGTTTTGTCCGAAC-GT---------------------CAATCCGTGCCGTTTAAATAGAAACACTGACATCGGAAAC--C--A---GAGAAACACGC--T---C------------AGTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACAAA-TATGACGAAAGAGAATGTGAAAACAA-A-TA--------CGAGTCGG-TCGCTTCTA--TTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGAA---------ACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAGGTCTATCCTGTTATAA----------TCC--ATTAAATGGAAACAATAATCCGCCAAAGT---TCAT-CGGCAAATAGA-A-TAACG--C--TT-------------GGTGTTTTGT---GGC-GTTATAG----------------GAATTCA------------CGAAA-----ACAT-------------------------GC--T---C------------AGTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAAAA-GATAAACG-GATGAATTTG-AAAACA-AGTC--------CGAGTCc
gi|9 : gaatattataaaactattGAAACACGGACAT-----AT--T--C---g
gi|9 : GAGAT-AATATGAAACAAACAA-----------AAATCGG-TCGCT--TA--TTTT--CTATGGCACGAACGTTTTAAAGA-----------------------------C-AAA--------------------CA----ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------caattgatgatttcagcgcaattcacaaacacacacttagttgagataatatgaaacaaacaaaaatcggtcgcttattttctatggcacgaacgttttaaagacaaacaattattgggcaagcattggtgatatcatttaaataatgtgttattcacggcaggcgcgtaacaataccagagctcgcggaggaagtttgagtgatttacagttatggttggcttatcatagga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|13 ): ACTTTTCACCTACTGGTGATAGTAGAATGTAATTTTGTGCATTAATTCAAGATATATTAAATTAATATGTGTTTAAATGTACAATAAATTGGACATACCGCTCATAGATAATTTCAAAGTCCACAACTTTTTATCACCCCTCGTATGTCTGTT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333 1 55555555555555555555555555555555555555555555555555555555555 111 111 222222222 111 111 11 33333 11111111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 44444444444 22222222222222 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 22222 444444444 333 11 666666666666666666666 22222
lowQualScore : 0 5 7 555 99 5555555555555555 5 5 4 0 4 0 3 33333333333333333333333333333333333333333333333333333333333 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 3 5 1 99 7 111 00 2 00000 0 88888888888 2 5 6 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 6 111 1 6 6 6 1 1 1 1 5 66666666666 777 6 1 77777777777777 777777777777777777777777777777777777777777777777777777777777 1 0 444 1 55 1 1 0 99999999 11111 000000000 8 3 1 888 33 555555555555555555555 22222 22 1
lowQualScore : . . . ... .. ................ . . . . . . . ........................................................... .. ... . . . . .. ... ......... . . ... . . . . . . .. . ... .. . ..... . ........... . . . .................................................................................................... . . ... . . . . . . . . . ........... ... . . .............. ............................................................ . . ... . .. . . . ........ ..... ......... . . . ... .. ..................... ..... .. .
lowQualScore : 0 0 0 222 55 6666666666666666 0 0 0 6 3 7 9 11111111111111111111111111111111111111111111111111111111111 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 7 2 0 22 2 777 33 5 11111 1 66666666666 5 2 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 7 777 0 7 7 7 7 4 9 3 7 77777777777 777 7 0 22222222222222 333333333333333333333333333333333333333333333333333333333333 0 6 000 0 44 4 0 6 00000000 55555 000000000 8 5 0 555 88 555555555555555555555 55555 22 0
consensus : NNNACGAGGGATGATA-AA-AAAT-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATTTCATTACATA---------------------TTATAAATTC-----T-----TG-------G-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTTGTTTTGTCCGAAC-GT---------------------GAATCCA------------AGAAACACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNACGAGGGATGATA-AA-AAAT-ACGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATTTCATTACATA---------------------TTATANATTC-----T-----TG-------G-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTTGTTTTGTCCGAAC-GT---------------------GAGTCCA------------AGAAACACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
gi|1 : TTAAATA---------------------TTGTAAATTC-----T-----CT-------A-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTTTAAATA-ACGTCACTTTTAAGCAAAGCCCACTCTATTAATTTCACTTTTTTTACTTATTAAATG-GA--AAAAATCCGTAAAAGT---TCG-TATGCTGGTACACTGACGTAT--TTTATGACCATTG-A--TGTTTTGTCCGAAC-GTTAATCCGTGCCTTTTTTCACAGAGTCCA------------AGAAACACTTACATA----AT--TACT---GCGTCATCGAA--TCCAC------------AGAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAAAA-GATGAAGGAGACGAATATGAATACAA-A-TA--------CGAGT-TGTTCATT--TC--TTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : TTATATA---------------------TTGTACATTC-----T-----TG-------G-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAAT---------ACCTCTGTTATGCAAACTCAGAGCACG---AGCTAA-TGCACGTTAATTTTACGTAAGACCCATCCTATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATC--TCTGCTGATAGAATGACG--CCATTTATAACGGT---AGATGCTTTGTTCGAAC-GT---------------------ggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : tGC--A---C------------AATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT------AA-AGCCAGCTGTAACGAG---A-TCACT--GGGTTTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTGca
gi|12 : actgatcattcagaacaccGGATGATA-AA-AA-C-ACGTGGA--TTT-------GTTT----A-TATCT-TGAAAACACTTCGGACTATTGCATT-CATATTTTTCCTACTGGTAGCTCGTTTATATATTA-----T-----AGATTCACTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAAT---------ATCACTGTTTTGCcgaaaa
gi|13 : ACGAGGGGTGATA-AA-AAGT--TGTGGAC-TTT-------GAA-----ATTATCTATG--AGCGGTATGTCCAATTT-ATTGTACA---------------------TT-TAAA
gi|14 : acttttcacctactggtgatagtagaatgtaattttgtgcattaattcaagatatattaaattaatatgtgATGAGGGATGATACGA-AAAT-ATGTGGAC-TT----------------A-TATCT-TGAAAACAGGTCGGACTATTTCATT-CAAA---------------------TT---TATCC-----TACTGCTG-------ACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGAT---------ACCCCTGTTTTACAatgtctgtt
gi|15 : TGATA-AA-AA-T-ACGTAGAC-TTTT------GTT-----A-TATCT-TGAAAACTGTTCAGACTATTTCATT-CATA---------------------TT-T---TTCCCTATT-----TG-------G-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGAT---------ACCCCTGTTTTACAA
gi|17 : ACGAGGGATGAT--AA-AAAT-AT----AT-TTT-------GTT-----A-TATCT-TTATAGCAGTATGCTCCATTT-ATTGCAAA---------------------TT
gi|18 : ttaatattgcaattgttaGGGATGATA-AA-TAATTAGTTGGAC-TTTAAGTTTTGTT-----A-TATTT-TGAAAACCGTTCGGACAATTTCATTgtatagttaaaat
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|3 : ACAAGGGGTGATA-AAGAAGT-ATGTGGACTTTT-------GTTTTGTAA-TATCT-Tgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|4 : atttgttatccaagacaggcaggtgtaacaatacgagagatgacagaggaaaatggagtgagttacgactatgcatggactattttattagaaatcaaattggcacttcctcaggtattttgttattaaatgaatttatgcattgataacagtaaggttaaaacatgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaATGAGAAATTATACAA-AAAT-ATGTGGA-------------------------TT-TGAAAATGGTTCGGACTATTTCATTATATA---------------------TTATCAATTT-----T-----TG-------A-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGAT---------ACCTCTGATTTATAAACAGGCAGCACG---GTCTAAATG-ATGCCATTTTTACATAAGA-----CCTATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGT---TCATTCTGCTGATA---------------TATG--CGTTGCAGTTGTT---TCCACACAGT-----------------------ATCCA------------AGAAACACGAACTT-----AT--T--CTTGGCCTCATTGGC--T---C------------AGTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAAAA-GATGAAAGAGACGAATATGAAAAAAA-AATC--------CGTGTCTG-TAGCT--TA---CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATacat
gi|5 : aatTTACA-A---------------------TTATAAATTC-----T-----TA-------G-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCACG---GTCGAAATG-ACGCCTCTTTGATGCCAGGTC-ACCTTACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGT---TCG-TCTGCTGATAGAATGACG--TCATTTATAACGGTTGCAATT
gi|5 : ttg--T--TTCATATGCAGTGCAGTTGTTTT---CAAAC-A----------------------GAGTCTA------------TGAAACATGGACATG----ATTAT--A---GCGTCATTGGCATT---CACGGAAACACGTAGTTAT--AAC---TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAAAA-GATGAAGGAGGCAAGGATGAGTAAAA-A--CA-------CGAGATTG-TCA--------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCcggtgttaaaacatcaacccgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcatAGCACG---GTCTAAGCG-CCACCACATTTACGTATGACCCACCGTATTAAAATCACTATTTCTCC--ATTATA-GGGAACAAAAATCCGCCAGCGT---TTG-TCTTCCGATAGAATGACGTCT--TTTATAACCGTTG-A--TGTTTTGTCCGAAC-GT---------------------CAATCCGTGCCGTTTAAATAGAAACACTGACATCGGAAAC--C--A---GAGAAACACGC--T---C------------AGTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACAAA-TATGACGAAAGAGAATGTGAAAACAA-A-TA--------CGAGTCGG-TCGCTTCTA--TTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGAA---------ACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAGGTCTATCCTGTTATAATC----------C--ATTAAATGGAAACAATAATCCGCCAAAGT---TCA-TCGGCAAATAGAATAACG--C--TT-------------GGTGTTTTGT---GGC-GTTATAG----------------GAATTCA------------CGAAA-----ACAT-------------------------GC--T---C------------AGTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAAAA-GATAAACG-GATGAATTTG-AAAACA-AGTC--------CGAGTCc
gi|9 : gaatattataaaactattGAAACACGGACAT-----AT--T--C---g
gi|9 : GAGAT-AATATGAAACAAACAA-----------AAATCGG-TCGCT--TA--TTTT--CTATGGCACGAACGTTTTAAAGA-----------------------------C-AAA--------------------CA----ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------caattgatgatttcagcgcaattcacaaacacacacttagttgagataatatgaaacaaacaaaaatcggtcgcttattttctatggcacgaacgttttaaagacaaacaattattgggcaagcattggtgatatcatttaaataatgtgttattcacggcaggcgcgtaacaataccagagctcgcggaggaagtttgagtgatttacagttatggttggcttatcatagga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 3333333333333333 1111 33333333333333333333333 1 333333333333333333333 111 111 222222222 111 111 11 33333 11111111111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 44444444444 22222222222222 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 22222 444444444 333 11 666666666666666666666 22222
lowQualScore : 0 00 5 99 5555555555555555 5 5 4 0 2222 4 77777777777777777777777 5 3 6 55 333333333333333333333 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 3 5 1 99 7 111 00 2 00000 0 88888888888 2 5 6 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 6 111 1 6 6 6 1 1 1 1 5 66666666666 777 6 1 77777777777777 777777777777777777777777777777777777777777777777777777777777 1 0 444 1 55 1 1 0 99999999 11111 000000000 8 3 1 888 33 555555555555555555555 22222 22 1
lowQualScore : . .. . .. ................ . . . . .... . ....................... . . . .. ..................... .. ... . . . . .. ... ......... . . ... . . . . . . .. . ... .. . ..... . ........... . . . ......................................................................................................... . . ... . . . . . . . . . ........... ... . . .............. ............................................................ . . ... . .. . . . ........ ..... ......... . . . ... .. ..................... ..... .. .
lowQualScore : 0 11 0 55 6666666666666666 0 0 0 6 1111 3 00000000000000000000000 2 9 1 22 444444444444444444444 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 7 2 0 22 2 777 33 5 11111 1 66666666666 5 2 7 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 7 777 0 7 7 7 7 4 9 3 7 77777777777 777 7 0 22222222222222 333333333333333333333333333333333333333333333333333333333333 0 6 000 0 44 4 0 6 00000000 55555 000000000 8 5 0 555 88 555555555555555555555 55555 22 0
consensus : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTTGTTTTGTCCGAAC-GT-----NAAT---------------------CCA------------AGAAACACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTTGTTTTGTCCGAAC-GT-----GAAT---------------------CCA------------AGAAACACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
gi|1 : T-----------------------TAAATATTGTAAATTC-----T-----CTA-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTTTAAATA-ACGTCACTTTTAAGCAAAGCCCACTCTATTAATTTCACTTTTTTTACTTATTAAATG-GA--AAAAATCCGTAAAAGT---TCG-TATGCTGGTACACTGACGTAT--TTTATGACCATTG-A--TGTTTTGTCCGAAC-GT-----TAATCCGTGCCTTTTTTCACAGAGTCCA------------AGAAACACTTACATA----AT--TACT---GCGTCATCGAA--TCCAC------------AGAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAAAA-GATGAAGGAGACGAATATGAATACAA-A-TA--------CGAGT-TGTTCATT--TC--TTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : T-----------------------TATATATTGTACATTC-----T-----TGG-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAAT---------ACCTCTGTTATGCAAACTCAGAGCACG---AGCTAA-TGCACGTTAATTTTACGTAAGACCCATCCTATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATC--TCTGCTGATAGAATGACG--CCATTTATAACGGT---AGATGCTTTGTTCGAAC-GT-----ggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : tGC--A---C------------AATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT------AA-AGCCAGCTGTAACGAG---A-TCACT--GGGTTTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTGca
gi|12 : actgatcattcagaacaccGGATGATA-AAAA--C-ACGTGGA--TTT-------GTTT----A-TATCT-TGAAAACACTTCGGACTATTGCATTCATATTTTTCCTACTGGTAGCTCGTTTATATATTATAGATTC-----A-----CTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAAT---------ATCACTGTTTTGCcgaaaa
gi|13 : ACGAGGGGTGATA-AAAAG-T--TGTGGAC-TTT-------GAA-----ATTATCTATG--AGCGGTATGTCCAATT----T-AT-----------------------TGTACATT-TAAA
gi|14 : acttttcacctactggtgatagtagaatgtaattttgtgcattaattcaagatatattaaattaatatgtgATGAGGGATGATACGAAAA-T-ATGTGGAC-TT----------------A-TATCT-TGAAAACAGGTCGGACTATT----TCAT-----------------------T-CAAATT-T--ATCC-----TACTGCTGACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGAT---------ACCCCTGTTTTACAatgtctgtt
gi|15 : TGATA-AAAA--T-ACGTAGAC-TTTT------GTT-----A-TATCT-TGAAAACTGTTCAGACTATT----TCAT-----------------------T-CATATT-T---TTCCCTATT-----TGG-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGAT---------ACCCCTGTTTTACAA
gi|17 : ACGAGGGATGAT--AAAAA-T-AT----AT-TTT-------GTT-----A-TATCT-TTATAGCAGTATGCTCCATT----T-AT-----------------------TGCAAATT-TAA
gi|18 : ttaatattgcaattgGGGATGATA-AATAA-TTAGTTGGAC-TTTAAGTTTTGTT-----A-TATTT-TGAAAACCGTTCGGACAATT----TCAT-----------------------Tgtatagttaaaat
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|3 : ACAAGGGGTGATA-AAGAAGT-ATGTGGACTTTT-------GTTTTGTAA-TATCT-Tgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|4 : atttgttatccaagacaggcaggtgtaacaatacgagagatgacagaggaaaatggagtgagttacgactatgcatggactattttattagaaatcaaattggcacttcctcaggtattttgttattaaatgaatttatgcattgataacagtaaggttaaaacatgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaATGAGAAATTATACAAAAA-T-ATGTGGA-------------------------TT-TGAAAATGGTTCGGACTATT----TCAT-----------------------TATATATTATCAATTT-----T-----TGA-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGAT---------ACCTCTGATTTATAAACAGGCAGCACG---GTCTAAATG-ATGCCATTTTTACATAAGA-----CCTATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGT---TCATTCTGCTGATA---------------TATG--CGTTGCAGTTGTT---TCCACACAGT-------AT---------------------CCA------------AGAAACACGAACTT-----AT--T--CTTGGCCTCATTGGC--T---C------------AGTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAAAA-GATGAAAGAGACGAATATGAAAAAAA-AATC--------CGTGTCTG-TAGCT--TA---CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATacat
gi|5 : aatT-----------------------TACA-ATTATAAATTC-----T-----TAG-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCACG---GTCGAAATG-ACGCCTCTTTGATGCCAGGTC-ACCTTACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGT---TCG-TCTGCTGATAGAATGACG--TCATTTATAACGGTTGCAATT
gi|5 : ttg--T--TTCATATGCAGTGCAGTTGTTTT---CAAAC-A------GAGT---------------------CTA------------TGAAACATGGACATG----ATTAT--A---GCGTCATTGGCATT---CACGGAAACACGTAGTTAT--AAC---TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAAAA-GATGAAGGAGGCAAGGATGAGTAAAA-A--CA-------CGAGATTG-TCA--------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCcggtgttaaaacatcaacccgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcatAGCACG---GTCTAAGCG-CCACCACATTTACGTATGACCCACCGTATTAAAATCACTATTTCTCC--ATTATA-GGGAACAAAAATCCGCCAGCGT---TTG-TCTTCCGATAGAATGACGTCT--TTTATAACCGTTG-A--TGTTTTGTCCGAAC-GT-----CAAT---------------------CCGTGCCGTTTAAATAGAAACACTGACATCGGAAAC--C--A---GAGAAACACGC--T---C------------AGTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACAAA-TATGACGAAAGAGAATGTGAAAACAA-A-TA--------CGAGTCGG-TCGCTTCTA--TTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGAA---------ACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAGGTCTATCCTGTTATAA----------TCC--ATTAAATGGAAACAATAATCCGCCAAAGT---TCA-TCGGCAAATAGAATAACG--C--TT-------------GGTGTTTTGT---GGC-GTTATAGGAAT---------------------TCA------------CGAAA-----ACAT-------------------------GC--T---C------------AGTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAAAA-GATAAACG-GATGAATTTG-AAAACA-AGTC--------CGAGTCc
gi|9 : gaatattataaaactattGAAACACGGACAT-----AT--T--C---g
gi|9 : GAGAT-AATATGAAACAAACAA-----------AAATCGG-TCGCT--TA--TTTT--CTATGGCACGAACGTTTTAAAGA-----------------------------C-AAA--------------------CA----ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------caattgatgatttcagcgcaattcacaaacacacacttagttgagataatatgaaacaaacaaaaatcggtcgcttattttctatggcacgaacgttttaaagacaaacaattattgggcaagcattggtgatatcatttaaataatgtgttattcacggcaggcgcgtaacaataccagagctcgcggaggaagtttgagtgatttacagttatggttggcttatcatagga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 3333333333333333 1111 33333333333333333333333 1 333333333333333333333 111 111 222222222 111 111 11 33333 11111111111 999999999999999999999999999999999999 7777777777777777777777777777777777777777777777 111 44444444444 22222222222222 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 22222 444444444 333 11 666666666666666666666 22222
lowQualScore : 0 00 5 99 5555555555555555 5 5 4 0 2222 4 77777777777777777777777 5 3 6 55 333333333333333333333 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 3 5 1 99 7 111 00 2 00000 0 88888888888 77 0 1 0 5 0 5 88 111111111111111111111111111111111111 99 5555555555555555555555555555555555555555555555 1 6 111 1 6 6 6 1 1 1 1 5 66666666666 777 6 1 77777777777777 777777777777777777777777777777777777777777777777777777777777 1 0 444 1 55 1 1 0 99999999 11111 000000000 8 3 1 888 33 555555555555555555555 22222 22 1
lowQualScore : . .. . .. ................ . . . . .... . ....................... . . . .. ..................... .. ... . . . . .. ... ......... . . ... . . . . . . .. . ... .. . ..... . ........... .. . . . . . . .. .................................... .. .............................................. . . ... . . . . . . . . . ........... ... . . .............. ............................................................ . . ... . .. . . . ........ ..... ......... . . . ... .. ..................... ..... .. .
lowQualScore : 0 11 0 55 6666666666666666 0 0 0 6 1111 3 00000000000000000000000 2 9 1 22 444444444444444444444 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 7 2 0 22 2 777 33 5 11111 1 66666666666 99 1 4 7 3 4 7 00 666666666666666666666666666666666666 22 5555555555555555555555555555555555555555555555 0 7 777 0 7 7 7 7 4 9 3 7 77777777777 777 7 0 22222222222222 333333333333333333333333333333333333333333333333333333333333 0 6 000 0 44 4 0 6 00000000 55555 000000000 8 5 0 555 88 555555555555555555555 55555 22 0
consensus : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTT--GTTTTGTCCGAAC-GTCAAT---------------------CCA------------AGAAA--CACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTT--GTTTTGTCCGAAC-GTNAAT---------------------CCA------------AGAAA--CACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
gi|1 : T-----------------------TAAATATTGTAAATTC-----T-----CTA-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTTTAAATA-ACGTCACTTTTAAGCAAAGCCCACTCTATTAATTTCACTTTTTTTACTTATTAAATG-GA--AAAAATCCGTAAAAGT---TCG-TATGCTGGTACACTGACGTAT--TTTATGACCATTG-A--T--GTTTTGTCCGAAC-GTTAATCCGTGCCTTTTTTCACAGAGTCCA------------AGAAA--CACTTACATA----AT--TACT---GCGTCATCGAA--TCCAC------------AGAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAAAA-GATGAAGGAGACGAATATGAATACAA-A-TA--------CGAGT-TGTTCATT--TC--TTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : T-----------------------TATATATTGTACATTC-----T-----TGG-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAAT---------ACCTCTGTTATGCAAACTCAGAGCACG---AGCTAA-TGCACGTTAATTTTACGTAAGACCCATCCTATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATC--TCTGCTGATAGAATGACG--CCATTTATAACGGT---AGAT--GCTTTGTTCGAAC-GTCAggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : tGC--A---C------------AATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT------AA-AGCCAGCTGTAACGAG---A-TCACT--GGGTTTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTG
gi|12 : actgatcattcagaacaccGGATGATA-AAAA--C-ACGTGGA--TTT-------GTTT----A-TATCT-TGAAAACACTTCGGACTATTGCATTCATATTTTTCCTACTGGTAGCTCGTTTATATATTATAGATTC-----A-----CTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAAT---------ATCACTGTTTTGCcgaaaa
gi|13 : ACGAGGGGTGATA-AAAAG-T--TGTGGAC-TTT-------GAA-----ATTATCTATG--AGCGGTATGTCCAATT----T-AT-----------------------TGTACATT-TAAA
gi|14 : acttttcacctactggtgatagtagaatgtaattttgtgcattaattcaagatatattaaattaatatgtgATGAGGGATGATACGAAAA-T-ATGTGGAC-TT----------------A-TATCT-TGAAAACAGGTCGGACTATT----TCAT-----------------------T-CAAATT-T--ATCC-----TACTGCTGACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGAT---------ACCCCTGTTTTACAatgtctgtt
gi|15 : TGATA-AAAA--T-ACGTAGAC-TTTT------GTT-----A-TATCT-TGAAAACTGTTCAGACTATT----TCAT-----------------------T-CATATT-T---TTCCCTATT-----TGG-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGAT---------ACCCCTGTTTTACAA
gi|17 : ACGAGGGATGAT--AAAAA-T-AT----AT-TTT-------GTT-----A-TATCT-TTATAGCAGTATGCTCCATT----T-AT-----------------------TGCAAATT-TAA
gi|18 : ttaatattgcaattgGGGATGATA-AATAA-TTAGTTGGAC-TTTAAGTTTTGTT-----A-TATTT-TGAAAACCGTTCGGACAATT----TCAT-----------------------Tgtatagttaaaat
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|3 : ACAAGGGGTGATA-AAGAAGT-ATGTGGACTTTT-------GTTTTGTAA-TATCT-Tgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|4 : atttgttatccaagacaggcaggtgtaacaatacgagagatgacagaggaaaatggagtgagttacgactatgcatggactattttattagaaatcaaattggcacttcctcaggtattttgttattaaatgaatttatgcattgataacagtaaggttaaaacatgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaATGAGAAATTATACAAAAA-T-ATGTGGA-------------------------TT-TGAAAATGGTTCGGACTATT----TCAT-----------------------TATATATTATCAATTT-----T-----TGA-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGAT---------ACCTCTGATTTATAAACAGGCAGCACG---GTCTAAATG-ATGCCATTTTTACATAAGA-----CCTATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGT---TCATTCTGCTGATA---------------TATG--CGTTGCAGTT--GTT---TCCACACAGT--AT---------------------CCA------------AGAAA--CACGAACTT-----AT--T--CTTGGCCTCATTGGC--T---C------------AGTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAAAA-GATGAAAGAGACGAATATGAAAAAAA-AATC--------CGTGTCTG-TAGCT--TA---CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATacat
gi|5 : aatT-----------------------TACA-ATTATAAATTC-----T-----TAG-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCACG---GTCGAAATG-ACGCCTCTTTGATGCCAGGTC-ACCTTACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGT---TCG-TCTGCTGATAGAATGACG--TCATTTATAACGGTTGCAATTCGG---TGTTAAAAC-ATCAAC---------------------CC
gi|5 : ttg--T--TTCATATGCAGTGCAGTT--GTTTT---CAAAC-A-GAGT---------------------CTA------------TGAAA--CATGGACATG----ATTAT--A---GCGTCATTGGCATT---CACGGAAACACGTAGTTAT--AAC---TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAAAA-GATGAAGGAGGCAAGGATGAGTAAAA-A--CA-------CGAGATTG-TCA--------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcatAGCACG---GTCTAAGCG-CCACCACATTTACGTATGACCCACCGTATTAAAATCACTATTTCTCC--ATTATA-GGGAACAAAAATCCGCCAGCGT---TTG-TCTTCCGATAGAATGACGTCT--TTTATAACCGTTG-A--T--GTTTTGTCCGAAC-GTCAAT---------------------CCGTGCCGTTTAAATAGAAA--CACTGACATCGGAAAC--C--A---GAGAAACACGC--T---C------------AGTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACAAA-TATGACGAAAGAGAATGTGAAAACAA-A-TA--------CGAGTCGG-TCGCTTCTA--TTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGAA---------ACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAGGTCTATCCTGTTATAA----------TCC--ATTAAATGGAAACAATAATCCGCCAAAGT---TCA-TCGGCAAATAGAATAACG--C--TT-------------GGT--GTTTTGT---GGC-GTT-AT------------------------------------AGGAATTCACGAAAAC-----AT------------------GC--T---C------------AGTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAAAA-GATAAACG-GATGAATTTG-AAAACA-AGTC--------CGAGTCc
gi|9 : gaatattataaaactattGAAA--CACGGACAT-----AT--T--C---g
gi|9 : GAGAT-AATATGAAACAAACAA-----------AAATCGG-TCGCT--TA--TTTT--CTATGGCACGAACGTTTTAAAGA-----------------------------C-AAA--------------------CA----ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------caattgatgatttcagcgcaattcacaaacacacacttagttgagataatatgaaacaaacaaaaatcggtcgcttattttctatggcacgaacgttttaaagacaaacaattattgggcaagcattggtgatatcatttaaataatgtgttattcacggcaggcgcgtaacaataccagagctcgcggaggaagtttgagtgatttacagttatggttggcttatcatagga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 3333333333333333 1111 33333333333333333333333 1 333333333333333333333 111 111 222222222 111 111 11 33333 11111111111 1 999999999999999999999999999999999999 7777777777777777777777777777777777777777777777 111 44444444444 22222222222222 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 22222 444444444 333 11 666666666666666666666 22222
lowQualScore : 0 00 5 99 5555555555555555 5 5 4 0 2222 4 77777777777777777777777 5 3 6 55 333333333333333333333 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 3 5 1 99 7 111 00 2 00000 0 88888888888 77 0 1 0 5 0 1 66 111111111111111111111111111111111111 99 5555555555555555555555555555555555555555555555 1 6 111 1 6 6 6 1 1 1 1 5 66666666666 777 6 1 77777777777777 777777777777777777777777777777777777777777777777777777777777 1 0 444 1 55 1 1 0 99999999 11111 000000000 8 3 1 888 33 555555555555555555555 22222 22 1
lowQualScore : . .. . .. ................ . . . . .... . ....................... . . . .. ..................... .. ... . . . . .. ... ......... . . ... . . . . . . .. . ... .. . ..... . ........... .. . . . . . . .. .................................... .. .............................................. . . ... . . . . . . . . . ........... ... . . .............. ............................................................ . . ... . .. . . . ........ ..... ......... . . . ... .. ..................... ..... .. .
lowQualScore : 0 11 0 55 6666666666666666 0 0 0 6 1111 3 00000000000000000000000 2 9 1 22 444444444444444444444 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 7 2 0 22 2 777 33 5 11111 1 66666666666 99 1 4 7 3 4 4 77 666666666666666666666666666666666666 22 5555555555555555555555555555555555555555555555 0 7 777 0 7 7 7 7 4 9 3 7 77777777777 777 7 0 22222222222222 333333333333333333333333333333333333333333333333333333333333 0 6 000 0 44 4 0 6 00000000 55555 000000000 8 5 0 555 88 555555555555555555555 55555 22 0
consensus : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTT--GTTTTGTCCGAAC-GTCAAT---------------------CCA------------AGAAA--CACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTT--GTTTTGTCCGAAC-GTCAAT---------------------CCA------------AGAAA--CACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
gi|1 : T-----------------------TAAATATTGTAAATTC-----T-----CTA-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTTTAAATA-ACGTCACTTTTAAGCAAAGCCCACTCTATTAATTTCACTTTTTTTACTTATTAAATG-GA--AAAAATCCGTAAAAGT---TCG-TATGCTGGTACACTGACGTAT--TTTATGACCATTG-A--T--GTTTTGTCCGAAC-GTTAATCCGTGCCTTTTTTCACAGAGTCCA------------AGAAA--CACTTACATA----AT--TACT---GCGTCATCGAA--TCCAC------------AGAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAAAA-GATGAAGGAGACGAATATGAATACAA-A-TA--------CGAGT-TGTTCATT--TC--TTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : T-----------------------TATATATTGTACATTC-----T-----TGG-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAAT---------ACCTCTGTTATGCAAACTCAGAGCACG---AGCTAA-TGCACGTTAATTTTACGTAAGACCCATCCTATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATC--TCTGCTGATAGAATGACG--CCATTTATAACGGT---AGAT--GCTTTGTTCGAAC-GTCAggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : tGC--A---C------------AATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT------AA-AGCCAGCTGTAACGAG---A-TCACT--GGGTTTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTG
gi|12 : actgatcattcagaacaccGGATGATA-AAAA--C-ACGTGGA--TTT-------GTTT----A-TATCT-TGAAAACACTTCGGACTATTGCATTCATATTTTTCCTACTGGTAGCTCGTTTATATATTATAGATTC-----A-----CTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAAT---------ATCACTGTTTTGCcgaaaa
gi|13 : ACGAGGGGTGATA-AAAAG-T--TGTGGAC-TTT-------GAA-----ATTATCTATG--AGCGGTATGTCCAATT----T-AT-----------------------TGTACATT-TAAA
gi|14 : acttttcacctactggtgatagtagaatgtaattttgtgcattaattcaagatatattaaattaatatgtgATGAGGGATGATACGAAAA-T-ATGTGGAC-TT----------------A-TATCT-TGAAAACAGGTCGGACTATT----TCAT-----------------------T-CAAATT-T--ATCC-----TACTGCTGACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGAT---------ACCCCTGTTTTACAatgtctgtt
gi|15 : TGATA-AAAA--T-ACGTAGAC-TTTT------GTT-----A-TATCT-TGAAAACTGTTCAGACTATT----TCAT-----------------------T-CATATT-T---TTCCCTATT-----TGG-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGAT---------ACCCCTGTTTTACAA
gi|17 : ACGAGGGATGAT--AAAAA-T-AT----AT-TTT-------GTT-----A-TATCT-TTATAGCAGTATGCTCCATT----T-AT-----------------------TGCAAATT-TAA
gi|18 : ttaatattgcaattgGGGATGATA-AATAA-TTAGTTGGAC-TTTAAGTTTTGTT-----A-TATTT-TGAAAACCGTTCGGACAATT----TCAT-----------------------Tgtatagttaaaat
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|3 : ACAAGGGGTGATA-AAGAAGT-ATGTGGACTTTT-------GTTTTGTAA-TATCT-Tgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|4 : atttgttatccaagacaggcaggtgtaacaatacgagagatgacagaggaaaatggagtgagttacgactatgcatggactattttattagaaatcaaattggcacttcctcaggtattttgttattaaatgaatttatgcattgataacagtaaggttaaaacatgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaATGAGAAATTATACAAAAA-T-ATGTGGA-------------------------TT-TGAAAATGGTTCGGACTATT----TCAT-----------------------TATATATTATCAATTT-----T-----TGA-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGAT---------ACCTCTGATTTATAAACAGGCAGCACG---GTCTAAATG-ATGCCATTTTTACATAAGA-----CCTATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGT---TCATTCTGCTGATA---------------TATG--CGTTGCAGTT--GTT---TCCACACAGT--AT---------------------CCA------------AGAAA--CACGAACTT-----AT--T--CTTGGCCTCATTGGC--T---C------------AGTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAAAA-GATGAAAGAGACGAATATGAAAAAAA-AATC--------CGTGTCTG-TAGCT--TA---CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATacat
gi|5 : aatT-----------------------TACA-ATTATAAATTC-----T-----TAG-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCACG---GTCGAAATG-ACGCCTCTTTGATGCCAGGTC-ACCTTACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGT---TCG-TCTGCTGATAGAATGACG--TCATTTATAACGGTTGCAATTCGG---TGTTAAAAC-ATCAAC---------------------CC
gi|5 : ttg--T--TTCATATGCAGTGCAGTT--GTTTT---CAAACAG--AGT---------------------CTA------------TGAAA--CATGGACATG----ATTAT--A---GCGTCATTGGCATT---CACGGAAACACGTAGTTAT--AAC---TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAAAA-GATGAAGGAGGCAAGGATGAGTAAAA-A--CA-------CGAGATTG-TCA--------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCgtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcatAGCACG---GTCTAAGCG-CCACCACATTTACGTATGACCCACCGTATTAAAATCACTATTTCTCC--ATTATA-GGGAACAAAAATCCGCCAGCGT---TTG-TCTTCCGATAGAATGACGTCT--TTTATAACCGTTG-A--T--GTTTTGTCCGAAC-GTCAAT---------------------CCGTGCCGTTTAAATAGAAA--CACTGACATCGGAAAC--C--A---GAGAAACACGC--T---C------------AGTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACAAA-TATGACGAAAGAGAATGTGAAAACAA-A-TA--------CGAGTCGG-TCGCTTCTA--TTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGAA---------ACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAGGTCTATCCTGTTATAA----------TCC--ATTAAATGGAAACAATAATCCGCCAAAGT---TCA-TCGGCAAATAGAATAACG--C--TT-------------GGT--GTTTTGT---GGC-GTT-AT------------------------------------AGGAATTCACGAAAAC-----AT------------------GC--T---C------------AGTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAAAA-GATAAACG-GATGAATTTG-AAAACA-AGTC--------CGAGTCc
gi|9 : gaatattataaaactattGAAA--CACGGACAT-----AT--T--C---g
gi|9 : GAGAT-AATATGAAACAAACAA-----------AAATCGG-TCGCT--TA--TTTT--CTATGGCACGAACGTTTTAAAGA-----------------------------C-AAA--------------------CA----ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------caattgatgatttcagcgcaattcacaaacacacacttagttgagataatatgaaacaaacaaaaatcggtcgcttattttctatggcacgaacgttttaaagacaaacaattattgggcaagcattggtgatatcatttaaataatgtgttattcacggcaggcgcgtaacaataccagagctcgcggaggaagtttgagtgatttacagttatggttggcttatcatagga
blockSeqs : C AG T CT TAAGTTTTGTT T A G . C ATTTTTCCTACTGGTAGCTCGTT A T G AC TACTGCTGACAGGTTT TC AAT C A T AC TGT CCCCCCCCC T T TTG A C A C C A . T CTA AT G CCA ACGGTTGCAAT CG T T A CA CCGTGCCGTTTAAAT TT GATTATAGCGTCATTGGCATTCACGGAAACACGT C C . A T C T A A A A C GCCAGCTGTAA TCT . C GGGTTTTTA TGGAAGATAAGACATAAATGATGACACGGGTCATG A ATA A AG G G CATACGAC CTCCG . C A T AAT TT AATTTAT A AG T
blockSeqs : C G . C TGTTTTGTA . . A . C . A T A AG CCTATTTGG TT . T T . A CA . A A . A . T T C T . T . G G TCA TGCAGTGCAGT . T C A CA CCA . CGGAAACCAGAGAAACACGCTC T . . A . . . G A T A . ATC ATT . C TCTATTCAA TGGATAGAAATTATGGACAATCA G . T AG A A . TT . C A G . . AAA T TA A
blockSeqs : . A . C TTGTT . . T . C . G C A AA TTGG GT . C T . A AG . C G . G . C C T T . T . G G TCT CGTTGCAGT . T T . CA CTA . ATTCTTGGCCTCATTGGCTC T . . T . . . A A A C . GTC TCG . C TATTTTCT TCTTGGTAGAGGCAATCAACTG T . . A A . TT . . . G . . AAA T TA A
blockSeqs : . A . C TGAA . . A . C . G A A AA ACTG TC . T A . G TA . C . . A . C T . A . G . A G T ACGGTAGA . T C . A . . ATGCTC A . . T . . . G A A A . CA TCG . C TACTTA CAAACA G . . G T .
blockSeqs : . A . T TGTT . . C . . . A T . CA TTGA TC . C C . C TG . T . . . A . . A . G . . . C ACCGTTGA . . . . T . T . . C . . . G . A A . TA . . . A
blockSeqs : . A . C . . . G . . . A A . AA TTAG . . . G . A G . C . GG . . . . . . . . . . A
blockSeqs : . . . . . . . . . T . . T . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : A* C* TGTT************ **** TC ** ACGGTTGCAGT CCG********************************* GCGGCCACGCTC********************************** *** GCN******** TCG
originalCons : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACCGTTGCAGTT--GTTTTGTCCGAAC-GTCAAT---------------------CCA------------AGAAA--CACGGACAT-----AT--T--C---GCGTCATCGGC--T---C------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGTC--------CGAGTCTG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
finalCons : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTTGTT------------A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATAACGGTTGCAGTT--GTTTTGTCCGAAC-GTCAATCCG---------------------------------AGAAA--CACGGACATGCGGCCACGCTC----------------------------------AGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAAAA-GATGAAGGAGACGAATATGAAAAAAA-AGCN--------CGAGTCGG-TCGCT--TA--TTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 3333333333333333 1111 33333333333333333333333 1 333333333333333333333 111 111 222222222 111 1 111 11 33333333333333333333333 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 2222222 22222222222222 555555555555555555555555555555555555555555555555555555555555 111 22 22222222 22222 444444444 333 11 666666666666666666666 22222
lowQualScore : 0 00 5 99 5555555555555555 5 5 4 0 2222 4 77777777777777777777777 5 3 6 55 333333333333333333333 66 000 1 0 1 5 77 333 000000000 3 8 111 1 6 1 3 5 1 99 1 111 00 2 33333333333333333333333 77 0 1 0 5 0 555 66 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 1 6 5555 1 6 6 6 1 1 9999999 5 33333333333333 777777777777777777777777777777777777777777777777777777777777 1 0 444 1 55 1 1 0 99999999 11111 000000000 8 3 1 888 33 555555555555555555555 22222 22 1
lowQualScore : . .. . .. ................ . . . . .... . ....................... . . . .. ..................... .. ... . . . . .. ... ......... . . ... . . . . . . .. . ... .. . ....................... .. . . . . . ... .. .............................................................................................. . . . .... . . . . . . ....... . .............. ............................................................ . . ... . .. . . . ........ ..... ......... . . . ... .. ..................... ..... .. .
lowQualScore : 0 11 0 55 6666666666666666 0 0 0 6 1111 3 00000000000000000000000 2 9 1 22 444444444444444444444 77 000 7 4 0 0 00 888 000000000 4 2 777 7 7 0 7 2 0 22 3 777 33 5 00000000000000000000000 99 1 4 7 3 4 777 99 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 0 7 3333 0 7 7 7 7 4 6666666 7 88888888888888 333333333333333333333333333333333333333333333333333333333333 0 6 000 0 44 4 0 6 00000000 55555 000000000 8 5 0 555 88 555555555555555555555 55555 22 0
consensus : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--TC-TTTATA-ACGGTTGCAGTT--GTTTTGTCCGAAC---GTCAATCCG---------------------AGAAA--CACGGAC--A-------TG-------------C--GG---C--------CAC----G------CNCAGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAA-AAGATGAAGGAGACGAATATGAAAAAAAA-C----ACGAG-TCGGTCGCT--TATTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
Reference ( family-1416 ) : NNNACGAGGGATGATA-AAAAA-T-ATGTGGAC-TTT-------GTT-----A-TATCT-TGAAAACGGTTCGGACTATT----TCAT-----------------------TACATATTATAAATTC-----T-----TGG-------AAGTATTTCA---TCTCCGCGTTNA-CTGATA-AAAACG-TTATGGTCGTTTTCGAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTCTAAATG-ACGCCACTTTTACGTAAGGCCCACCCTATTAAANTCACTATTTCTCC--ATTAAATGTGAACAAAAATCCGCCAAAGT---TCG-TCTGCTGATAGAATGACG--T--TTTATA-ACGGTTGCAGTT--GTTTTGTCCGAAC---GTCAATCCG---------------------AGAAA--CACGGAC--A-------TG-------------C--GG---C--------CAC----G------CTCAGTNATA-AAG---TTTTGCGTAAATCTCGGTATGACNCCAA-CGCAGACAAT-GAAA-AAGATGAAGGAGACGAATATGAAAAAAAAGC----NCGAG-TCGGTCGCT--TATTTT--A-GTGGCACAAACGTTTTAAAGA-----------------TG--------GAC-ANAAA-C-AT---GACA---GATCA----ATTATTNGGCAAGCGTTGG---TGACGTCAGTTGAANAATTTGTTATCCAAGACAGGCAGGCGTAACAATACGAGAGATCGCGGAGGAAGNTGGAGTGAGTTACGGTTACGCATGGACTAT--------TTTATT---AGA---------AATCAAATTNGC-ATACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGNAAGGTTAANACAT
gi|1 : T-----------------------TAAATATTGTAAATTC-----T-----CTA-------AAGTATTT-A---TATCCGCGTTTA-AGGGTA-AAAACG-TTATGGTCGTTTTCAAT---------ACCCCTGTTTTACAAACGCGGAGCACG---GTTTAAATA-ACGTCACTTTTAAGCAAAGCCCACTCTATTAATTTCACTTTTTTTACTTATTAAATG-GA--AAAAATCCGTAAAAGT---TCG-TATGCTGGTACACTGACGTAT--TTTATG-ACCATTG-A--T--GTTTTGTCCGAAC---GTTAATCCGTGCCTTTTTTCACAGAGTCCAAGAAA--CACTTAC--ATAATTACTG-------------C--GT---C--------ATC----GAATC--CACAGAAACA-CAGATATTTTGCGTAAATCTCGGTATGATCCCAA-CGCAGACACC-GGAA-AAGATGAAGGAGACGAATATGAATACAAA-T----ACGAG-TTGTTCATT--TCTTTTCAA-ATGGCACAGATGCTTTAAAGACAGACGTGATTCCCTTTTG--------GACGACAAA-C-GTATAGACAGACGATCA----TTTATTTGACCAGCGTTGG---TGGCGGCAGCTGAAGAATTTGTTATCCAATATAGGC--GTGTTACAATACGAGAGATCTCGATGGAAGTTGGTGTGGGTTACGGTTCCGCATGGACTAT--------TTTA-----AGACCTTGCTCCGATGAATTTTGCTATATTTTTTCAGGTATTTCGCTA--TTCATACCATATGAAATA---A-TGAATTATTACATGTATTGATAATAGATAGGTTAACATAT
gi|10 : T-----------------------TATATATTGTACATTC-----T-----TGG-------AAATATTTCA---TCTGCGCGTTAC-CTAATACAAAA----TATCGACGTTACCAAT---------ACCTCTGTTATGCAAACTCAGAGCACG---AGCTAA-TGCACGTTAATTTTACGTAAGACCCATCCTATTAAAATCACTATTTCTCC--ATTAAATGTGAATAAAAATCCACCAAAATCTATC--TCTGCTGATAGAATGACG--CCATTTATA-ACGGT---AGAT--GCTTTGTTCGAAC---GTCAggcgttaatatataaatcttcttgatttataatagccgaaaaaatagatgaaaattaatgatgattatt
gi|11 : tC----G------CACAATCATA-AAA---TTTTGTGTAAATCTCGGTAAAACACCGA-CGCTGAC--TCGAGATATGATACAAGAATCAGATAT--AAAGCCAGCTGTAACGAGATCACTGGGT----TTTT--A-ATGGCACAAACGGTTCAAAGA-----------------TGGAAGATAAGAC-ATAAA-TGAT---GACACG-GGTCATG--GTCGCAAGGCAA-CACTGGATATGACGTCAGTTG
gi|12 : actgatcattcagaacacGGATGATA-AAAA--C-ACGTGGA--TTT-------GTTT----A-TATCT-TGAAAACACTTCGGACTATTGCATTCATATTTTTCCTACTGGTAGCTCGTTTATATATTATAGATTC-----A-----CTG-------AAGTAGTTTA---TCTCTGTGTTTA-CCGAT--GAAATGTTTATGTCCGTTACCAAT---------ATCACTGTTTTGCcgaaaa
gi|13 : ACGAGGGGTGATA-AAAAG-T--TGTGGAC-TTT-------GAA-----ATTATCTATG--AGCGGTATGTCCAATT----T-AT-----------------------TGTACATT-TAAA
gi|14 : acttttcacctactggtgatagtagaatgtaattttgtgcattaattcaagatatattaaattaatatgtgATGAGGGATGATACGAAAA-T-ATGTGGAC-TT----------------A-TATCT-TGAAAACAGGTCGGACTATT----TCAT-----------------------T-CAAATT-T--ATCC-----TACTGCTGACAGGTTTAAATATTGTAAATTCTC--TGTTTA-CAGATA-AAAA-G-TTATGGTCATTTTTGAT---------ACCCCTGTTTTACAatgtctgtt
gi|15 : TGATA-AAAA--T-ACGTAGAC-TTTT------GTT-----A-TATCT-TGAAAACTGTTCAGACTATT----TCAT-----------------------T-CATATT-T---TTCCCTATT-----TGG-------AAGTATT--A---TCTCCGAGTTAA-CTGATA-AAAACA-TTATAGTCGTTTTTGAT---------ACCCCTGTTTTACAA
gi|17 : ACGAGGGATGAT--AAAAA-T-AT----AT-TTT-------GTT-----A-TATCT-TTATAGCAGTATGCTCCATT----T-AT-----------------------TGCAAATT-TAA
gi|18 : ttaatattgcaattgGGGATGATA-AATAA-TTAGTTGGAC-TTTAAGTTTTGTT-----A-TATTT-TGAAAACCGTTCGGACAATT----TCAT-----------------------Tgtatagttaaaat
gi|2 : ATTTGTTTTCCAATACAGAC--GCGTAACAATGCGAGGGATCGCGGAGAAAGGTTGAGTGCATTACGGTTCCGCATGGACTATCATACGACTTTGCTCCGATA---------AAT----TTTGCAATATTTCCTCAGGTATTTTGTTATTTT-A-------------ATTTATTGAAAT----AATGCATTGATTATAAAGAGATAAATACATca
gi|3 : tATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATgcagaagtgtttgtgagtcataatagcagaaagtgtaaaaattgaccaagatattattagtatatggtatgaattgactataagtaagaatattaaatattgtaattgtttattaacaaaatggtacagacaatttcttacatatttcaaaatcactcaatattgcccaacagtggtgttgtagatatagtaaggtaaacattaaatttcaggtaaaatcaccattggaaggtaggcgtgttgaataaatgacagatctacgcccgtccactcaaatgattccacagcaatacgatgaagattggtaaagtgccatataccatatatgggtccatcgatataacttttcggtgcaggtaaaaaggcgcttcttcaaaaatcatgaacgtttcgacgttacacgtgctttggtaactcattgacgtcaaaaacgtcgtcgcactgcactgtgatcgcacagatgactatattgaatagtgtgtatttttttcctaccagcgatagtagaatgtaattgtgtacattcattcaagatatattaaactacatcatgttcaaatattcaataaa
gi|3 : ACAAGGGGTGATA-AAGAAGT-ATGTGGACTTTT-------GTTTTGTAA-TATCT-Tgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaaagatattacaaaacaaaagtccacatacttctttatcaccccttgtacat
gi|4 : atttgttatccaagacaggcaggtgtaacaatacgagagatgacagaggaaaatggagtgagttacgactatgcatggactattttattagaaatcaaattggcacttcctcaggtattttgttattaaatgaatttatgcattgataacagtaaggttaaaacatgtcacaatagctgaaagtgtgataattgcaagaaaaaatatcattatatggtatgtattgcctataagtaagcacattgaatattgcaattgtttaataacaaaatatcaaaaacagtaacaacaatttctcaagttacatatcttagaattattaaatattgcccaaaagtagttttctagatctggtagttcaggtaaaatcaccattgaaaggcgggcgttttacatcaatggaaaaactacactaggtcactgaagacaattctgcagcaacacagtgacgagtggtatagtgtcaaatatgggatgtgaatgcagacagaaggagggtacttaaaaaaatcatgaattgatgttacacaactcctctacatcacttcttgtgatcacggagatgactatattgattaatgtgtaactgtttacctactggtgacagtagaattttactttgtataattactcaaaatatctcatgtttaaatattaaataaatggagcatacagctcaaATGAGAAATTATACAAAAA-T-ATGTGGA-------------------------TT-TGAAAATGGTTCGGACTATT----TCAT-----------------------TATATATTATCAATTT-----T-----TGA-------AAGTATTTCA---TCTTTGTGTTCA-CTGATG-AAAAAG-TAATAGTTGTTTTTGAT---------ACCTCTGATTTATAAACAGGCAGCACG---GTCTAAATG-ATGCCATTTTTACATAAGA-----CCTATAAAATTCACTATTTCTCC--ATTAAATGTGAACAAAAAAACGCCAAAGT---TCATTCTGCTGATA---------------TAT--GC-GTTGCAGTT--GTT---TCCACACA--GT--ATCCA---------------------AGAAA--CACGAACTTA-------TT-------------CTTGG---C--------CTCATTGG------CTCAGTTATA-AAG---TTTTGTGCAAATCTGGGTATGACACCAA-CGCAGACAAT-GAAA-AAGATGAAAGAGACGAATATGAAAAAAAAAT----CCGTG-TCTGTAGCT--TA-CTT--A-GTGGCACATACACTTTTAAGA-----------------TG--------GAT-AGAAATT-ATG--GACA----ATCA----ATTATTGGGCCAGCGTTGG---TGACATCAGTTGAAAAATTTGTTATCCAAGACAGGCAGGTGTAACAATACGAGAGATGACAGAGGAAAATGGAGTGAGTTACGACTATGCATGGACTAT--------TTTATT---AGA---------AATCAAATTGGC---ACTTCCTCAGGTATTTTGTTA--TT-A-------------A---A-TGAATT----TATGCATTGATAACAGTAAGGTTAAAACATacat
gi|5 : aatT-----------------------TACA-ATTATAAATTC-----T-----TAG-------ACGAATTTCA---TCTCCGCGTTGA-TTGATC-AAAATA-TTATGGCTGTTTTCGACCCCCCCCCCACCCCTGTTTAATAAACGCGGAGCACG---GTCGAAATG-ACGCCTCTTTGATGCCAGGTC-ACCTTACTAAATTCACTATTTCTCC--CTTCAATCTGAACAAAAATCTATCACAGT---TCG-TCTGCTGATAGAATGACG--TCATTTATA-ACGGTTGCAATTCGG---TGTTAAAAC---ATCAACCCG---------------------
gi|5 : ttg--T--TTCATATGCAGT-GCAGTT--GTTTT---CAAACAGAGTCTAT-------------------------GAAA--CATGGAC--A-------TGATTATAGCGTCATT--GG---CATT-----CAC----GGAAACACGTAGTTATA-AC----TTTTGCGTAAATCTGGGTATGGCTCAAA-CGCAGATAAT-GAAA-AAGATGAAGGAGGCAAGGATGAGTAAAAA-C----ACGAG-ATTGTCA------------A-GTTACACAAGCCTTTTAAATATCT--------------TG--------G-T-AGAGG-C-A------------ATCAACTGATTATTTGGCAGGCGTTGG---CGTCGTCtgtcattttcatatgcagtgcagttgttttcaaacagagtctatgaaacatggacatgattatagcgtcattggcattcacggaaacacgtagttataacttttgcgtaaatctgggtatggctcaaacgcagataatgaaaaagatgaaggaggcaaggatgagtaaaaacacgagattgtcaagttacacaagccttttaaatatcttggtagaggcaatcaactgattatttggcaggcgttggcgtcgtcg
gi|6 : ttgttacaattataaattcttagacgaatttcatctccgcgttgattgatcaaaatattatggctgttttcgaccccccccccacccctgtttaataaacgcggagcacggtcgaaatgacgcctctttgatgccaggtcaccttactaaattcactatttctcccttcaatctgaacaaaaatctatcacagttcgtctgctgatagaatgacgtcatttataacggttgcaattcggtgttaaaacatcaacccgtgtcatAGCACG---GTCTAAGCG-CCACCACATTTACGTATGACCCACCGTATTAAAATCACTATTTCTCC--ATTATAGG-GAACAAAAATCCGCCAGCGT---TTG-TCTTCCGATAGAATGACG--TCTTTTATA-ACCGTTG-A--T--GTTTTGTCCGAAC---GTCAATCCGTGCCGTTTAAAT---------AGAAA--CACTGAC--A-------T--------------C--GGAAACCAGAGAAACAC----G------CTCAGTAAGA-AAA---TGTTGCCTTAAGCTCGGTATGATTTCAA-CGCAGACAAT-GACA-AATATGACGAAAGAGAATGTGAAAACAAA-T----ACGAG-TCGGTCGCTTCTATTCA--A-GTAGCACAACCGTTTTAAAGA-----------------g
gi|7 : TTTATCTGACA-AAACTG-TTATGGTCGTTTTCGAA---------ACC---GTTTTACCAAC------CATGTTGGTCTTAATG-ACGCCAATTTTACGTTAGGTCTATCCTGTTATAATC----------C--ATTAAATGGAAACAATAATCCGCCAAAGT---TCA-TCGGCAAATAGAATAACG--C--TT-------GG-------T--GTTTTGT---GGC---GTT-AT------------------------AGGAATTCACGAAA--A---------------------------------------CAT----G------CTCAGTTATACAAG----TTTGCGTAAATTTCGGTATGACCCCAATCACAAACAAA-GAAA-AAGATAAACG-GATGAATTTG-AAAACAAGT----CCGAG-TCGc
gi|9 : gaatattataaaactattGAGAT-AATATGAAACAAA--C----AAAAA-TCGGTCGCT--TATTTT--CTATGGCACGAACGTTTTAAAGA-----------------------------C-AAA--------------------CA----ATTATTGGGCAAGCATTGG---TGATATCATTTAAATAATGTGTTATTCACGGCAGGC--GCGTAACAATACCAGAGCTCGCGGAGGAAGTTTGAGTGATTTACAGTTATGGTTGGCTTAT--------
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTGATCACAGTCTACGTGGACTTTCTTTTCAGATTTATGCTTCGTTAAATTTTATTGCCTATTTGAACATGAAATATGTAAGGAATTGCCTGTACCATTTAAAGTTTTTAGTAAATAAACAATTGTATATGAGTCATAATAGCTGAATGTGTGATAATTGACCAAAATAATATTAATATATGTTTTACATTGCCTATCACGTTAAATATTGCAATCATTTATTTAAAAAATACTTTAAATGGTACAGACAAAGTCTTGCATATTTTAAAATTATTCAATATT
Unaligned ( gi|16 ): ATGATTCTGCAGCAATACTATAATGGTTGTTACAGTACCATATATAATAGATGGGTCCATTGACATCGCTTCCTAAAGATGTCATGAACGTTTGGACGTTACA