lowQualScore : 11111111111111111111111111111
lowQualScore : 444444444444444444444444444444444444444444444 1 88888888888888888888888888888888888888888888888888888 2222 1 111111 666666666666666666666666666666666666666666 1111111 11111 444444 1 11111111111111111111111111111 2 1 1 55555 222222 1 1 7777777777777 11 11 11 8888888888888888888888888888888 4 4444444 999999999999999999 2222222 11 2 1 2222 3333333333 4 1 33 1
lowQualScore : 6 555555555555555555555555555555555555555555555 7 66666666666666666666666666666666666666666666666666666 8888 0 3 2 4 666666 777 5 2 444444444444444444444444444444444444444444 6 6666666 44444 7 555555 4 1 5 44444444444444444444444444444 3 6 6 6 3 4 00000 888888 4 33 0 7 6 3 6 0 3333333333333 5 6 55 22 11 3333333333333333333333333333333 2 99 0 55 0 3333333 888888888888888888 3333333 11 7 3 6 7 4 7 3 0 7 1 0000 7 8888888888 0 6 5 22 6 5 6
lowQualScore : . ............................................. . ..................................................... .... . . . . ...... ... . . .......................................... . ....... ..... . ...... . . . ............................. . . . . . . ..... ...... . .. . . . . . . ............. . . .. .. .. ............................... . .. . .. . ....... .................. ....... .. . . . . . . . . . . .... . .......... . . . .. . . .
lowQualScore : 0 000000000000000000000000000000000000000000000 0 00000000000000000000000000000000000000000000000000000 3333 4 8 7 4 666666 888 0 1 333333333333333333333333333333333333333333 2 5555555 66666 8 333333 0 7 0 22222222222222222222222222222 2 4 6 0 2 0 00000 555555 0 00 2 0 8 2 7 7 3333333333333 0 0 66 00 00 0000000000000000000000000000000 8 88 8 55 0 3333333 333333333333333333 7777777 00 3 7 0 3 7 3 3 7 3 0 3333 3 0000000000 0 7 0 00 0 0 0
consensus : TGCTGATGTACACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATATAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATAT----ATATATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATT--ATACACAC-ACAAA-ANA-----T-------CNCG-----CGGGGGGG-ATG--------CCCCCGGA-CACCACTAGTTTC--GGCCTGCACAT-A-A-CTTTTAGG-CTAGCTACGCCCCTGAATTGGTGATACG--T--CATCTTTTCGA-A--TCGAGAC-TATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGNATAACTAAACTG----TAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTAGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC--AT---G---------TTTAG-------------CTCATAAGTCGNATTGCATCTAGCATTACCCAACCTGCTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGNNTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTAAAAGAAATGAT-TATCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACGATTAAAA----AGTCACGAAAATAATATCAGCATCAATAGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCGT
Reference ( gi|1 ) : TGCTGATGTGCACTGGCTGATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACCAACCTGATTTAG--AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAT----ATATATATATCAATGGTATTAAATAAACGTTAAAA-CGCACCAGAGCCATT--GTACACAC-ACAAA-AAA-----T-------CACG-----CGAAGGGGCATG--------CCCCTGGA-TACCACTAGTGTT--GGCATGCACAT-ACATTTTTTGGG-CTAGCTACGTCCCTGAATTGGTTATACA--T--CATCTTT--------T--------ATTTCTTAAACAAAAACAATATTGTATAAACACAAATAAAGGCATTCCATACGCTTTATTATTCATCCATAAAACACAATTGAAT-----AATTG----TAGATTATGTTTGGTTTTTCATGTTTCCTATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAATGCAACAATCAATGACGTATTCGATCCAGGCGTATGGGCC--AT-------------TTTAG-------------CTCGTAAGTCGCTTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAA-CGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTGAAGTCAACACGACAAATTTAAAGAAATGAT-TGTCTAAAAAGACAACAATCAGAAAGACATAGATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATC-GCATCAATCGATTGAAAGTAATAACATTTGAACATAAAATATGTACAATAGCGGAATAGAATTTTGAGCTGGCTGCCCTTCCAT
gi|2 : TGCTGATGTACACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATATAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATAGATATATATATCAATGGTATTTAATATACGTTAAAA-CGCACCAGAGCCATT--ATACACACAAAAAA-AAA-----T-------CACG-----CGAGGGGGCATG--------TCCCTGGA-CCCCACTAGTGTT--GGCATGGACAT-A-ATGTTTTGGG-CTAGCAACGTCCCTGAATTGGTGATACG--T--CATCTTTTCGAGAACT--------ATTTCTTAAATAAAAA-AATATTGTATTTATACAAATAAAGGCATTTCATGCGCTTTATTATTCATCCATAAA--ACAATTGTATAACTAAATTG----CAGATCATGTTTGGTATTTCATGTTTGCTATATTCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------A-GAGCTTCCAAGGCTGTTACGATAGTCTTATTGAGCAAAACGCAACAATCAATGACGCATGCGATCCGAGCGTATGGGCC--AT-------------TTTAG-------------CTCATAAGTCGCTTTGC----------ACCCAACCTGCTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGGTTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTATCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCAGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGTTTGTGAGTGACGGATAGTAAAGTCAACACGAC-AATT--AGGAA--GATATATAT-AAATTACCACAATTAAAAAGAC--------AGT--CACGA------------------AAATAATATCAGCATCAAAAGCTTGAAAGTAATAACATTTGAAATTACGATATGTACAATAGCGAAATAAAAATTTTACCTGGTTGCCCTTCCAT
gi|15 : taatattatacctttataaT----AAATATGTGTCTATGTGATT---TA--CGTCAAAA-CGCACCAGAGCCATT--CT--TCAC-ACAAA-ACA-----TTTTCAGGTATG-----TGGGGAGGCATG--------CACA-GGA-CCCTACTAATTTG--GGCCTGCACAT-A-A-CTTTTAAG-CTAGCT
gi|11 : ttatctaacaagaactattttgcttctgtcgtcacttt----ATATATATATCAATGATATTAAATATAAGTCAAAA-CGCACAAGAGCCATT--AAACAGAC-A-AAA-AAA-----T-------CCCG-----CGA----------------------GGA-CACC-CTAGCTTC--GGCCTGCACATAACA--TTTTGGG-CTAGCTACGCACCTGAATTGGTGATACATGT--CTTCTTTTCGAAACAT--------ATTTCTTAAA-AAAAATAATATTGCATTAA
gi|8 : aGTCTCAAATATACGTCAAAAATGCACCAGAGCCATT--CTACACAC-----A-ACACTTTTT-------CAGGGGGGTGGGGGGGGGGTGGGGGGGTGCCCCCGG---ACCTCCTGTATTTGGGCCTGTACATAACA---TTTAGG-CTAGCTACGCCCCTG
gi|9 : agtagcatagctaccttataagcctaacgtcccaggtctgcacataattttgagaggtaagtttttacaaaaattaaaaaataaattaggttcaaaatgtatttaattatGTCTCAAATATACGCCAAAG-TGCACCAGAACCATT--CT--ACAC-ACAAA-ATA-----T-------TTC------CGAGGGGG-------------CCATGGT-TA---------------CATGCACGT-A-A-CTTTTAGG-CTAGg
gi|7 : gtgacatagctacctaataggcccaaaggcccaggcttgcaaacaattttcagaggcaacaattctttgttgaacttattcaaaaattaaaaaaataaataagttcaagatgtgtttaatttcATTAA-TATACGTTAAA--TGCACCACAGCCATT--ATACACAC-AAAAA-AGC-----T-------CCCC-----C-------------------CCTCCGGA-CACCACTAGTTTG--GGCCTGCACAT-A-A-TGTTTAGG-CTAGCTACACCCCTGt
gi|6 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgatgtgttgaatggctgtggtgcattttgacgtttatttgcgacatgcaaaaAAATATACGCCAAAA-CGCACCAGAGTTATT--ATAAACAC-ACAAA-CAA-----T-------CCCG-----AGAGGGAG-GTG--------CCCCTGGAACACC-CTAGCTTC--GGCCTGCACAT-A-ACTTTTTAGG-CTAGCTACGCACCTGAATTGGTGATACA--TGTCTTCTTT--------TCGAGACTTATTTCTTAAA--AAATTAATATTGCATTAACACAAATAAAGGCATTCCATGCACTTTATTATTCCTCCATTAAACACAATTGAATAACTAAATTG----TAGTTCATGGTTGATATTTCATATTTCCCATCTCCGATTTTCCCCTAAAGAA-CCTCTTAGAATA-------------
gi|7 : AAATAAACGTCAAAA-TGCACCACAGCCATT--CAACACAtcc
gi|12 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgaATAA--GTCAAAA-CGCACAAGCGCCCTTCAACATACAC-ACAAACAAA-----T-------C-CGGTT--GGGTGGAGAATG--------TCCC-GGA-CCCCA-TAGTCTG--GACCTACGTAT--TAACTTTTAGG-CTAGCTGCGgcgacatgcaaaaattaatatacgttaaatgcaccacagccattatacacacaaaaaagctccccccctccggacaccactagtttgggcctgcacataatgtttaggctagctacacccctg
gi|3 : atgaaaaaaaagcaggaaattctatgcctgttcaaaatgtgtttaagtatgtctcaagtagatctGCATG--------CCCCTGGA-CCCCACTAGTGCT--GGCATGCACAT-A-ATTTTTGGGGGCTAGCTACGTCCCTGAATTGGTGATACG--T--CATCTTT--------TCGAGACCTATTTCTTAAACAAAAAAAATATTGTATTAACACAAATAAAGGCATTCCATGCGCTTTATTTTTCATCCATAAAACACAGTTATAC-----AACT------AAATT-------GTATTTCATGTTTCCTATCTCCGATTTCCCACGAAAGAA-CCTATTGGAATA-------------AGAAGCTTCCAAGGCGGTTACGGTAGTCTGATTGAGCAAAACGCAACAATCAATGACGTATGTGATCCGAGCGTATGGGCC--AT-------------TTTAG-------------CTCATAAGTCGCTTTGCATCTAGAATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAATACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTAGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGCAA------TGCAATG------------ATTTCGAGTGTCGGATAGTAAAGTCAACACGACAAATTAAAAGAAATGAT-TGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAACATCAATCGCTTGAAAGTAATTACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTAGTTGCCCTTCCATc
gi|4 : ACG--------CCCCTG---------TAGTTTC--GGCCTGCACAT-A-ACTTCTTGGG-CTAGCTACGCCACTGAATTGGTGATACA------A------------------------TTCTTCAA-AAAAAGAATATTGCATCAACACAAATGAAGGCATTCCATGTGCATTATTATTCATCCATAAAACACAACTGAAT-----AACTAAATTTAGTTCATGGTTGATATTTTATATTTTC--CCTCCGATTT--CCCTAAGGAA-CCTTTTAGAAT--------------ACTCTCTTCGAAGACGGCTGCGATAGTCTGGCTCAGCAGAACGGAACAAGCAATGACGTTGGCGATCCGAACGTACAGATT--AG-------------TTTGGATATTGCATCTATCTCGTAGACCGTATTGTATCTAACATTACCCaa
gi|10 : aagaggaaaaatgtattcgacaaattcaattcatgaatgtttagctgtatattcaataagtgatgtcgttgttttattctgttgttattttaaaaaatattggacgcccccaataccaagtccttcgttATGGTTGATATTTCACGTTTCCCATCTCGGATTTCCCCCTAAAGAA-CCTCTTAGAATACTCTCTATCAACAAGGAGCTTCCAAGGCGGTTACGGTAGTCTGATTAAGCAGAACGCAATAATCAATGACGTATGCGATCCGAGCGTATGGGCCCTATTGAGGTTTGCA--TTTAG-------------CTCATCAGTCGGATTGCATCTAGCATTAC
gi|14 : cCCCTAAAGAAACCTCTTAGAATACTCTCTATCAACAAGGAGCTTCACAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTAGGCGATCCGAGCGTATGGGCC--ATATTGAGGATTGCATTTAG-------------CTCATAATTCGGATTGCATCTAGCATT
gi|5 : CAGATCTAGCTTTTTAGTTTCACAATCGTATTGGCAACTATCAACAAGCGTAACGCGGATTGCAGTAAACGGAATGCGCGTAACGCGGATTGCAGTAAATGGAATGCAATGTAGATCTACTGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTAAAAGAAATGAT-TATCTAAAAAGACAACAATCAGGATGACATATATAAAGTACCACAATTAAAA----AGTCACGAAAATAATATCAGCACCAATAGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACATGGTTGCCCTTCCGTgacac
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ACGTCGCTCGAGTAATTATTGATTCTGCTTCAAAGAGTAAATTTGTATTCTGCATAATTAATTCATGGAAGTATATTAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATTTTTGGACGCCCCAATACCAAATATTTCGTTACGCCCCTGCATTT
Unaligned ( gi|16 ): AAATAGGCACAAAGGCGCGGTCCTGCACATAATTTTCAGAGACACTTTGTTTAGTTTAGTGTGTTGAACCTATTCAAAAACTAAAAAATAAATTAGGTTCAAAATATGTTTAATTATGTCTCAAATATACGGCA
Unaligned ( gi|17 ): TAACGTAGCTACCAAGTTAATAGGTCAGGGCCTGCACATAATTTTCAGAGGCAACTTTTTAAGAAAGTTCCATTTTATGTAAATTATATCAATGAAATGTATAAATTATGTC
Unaligned ( gi|18 ): GTAGCATAGCTACCCAATAGGCCCAAGGGCCCAGGCT
Alignments
lowQualScore : 11111111111
lowQualScore : 11 2222 1 11 444444444444444444444444444444 111 00000000000 1 6666666666666 8888888888888 3333333333333 3333333 777777777777777777 11 111 1 4444
lowQualScore : 4 88 1111 4 777 2 4 1 00 1 777777777777777777777777777777 1 6 4 7 3 3 5 3 3 6 3 6 55 999 3 2 22222222222 3 1 1 0 7 3 2 1 5 2222222222222 5 99 3333333333333 6666666666666 55 0 22 0 3 2222222 333333333333333333 33 777 33 3 0 3 0 3 2 3 3 8 2222 3 3 2
lowQualScore : . .. .... . ... . . . .. . .............................. . . . . . . . . . . . . .. ... . . ........... . . . . . . . . . ............. . .. ............. ............. .. . .. . . ....... .................. .. ... .. . . . . . . . . . .... . . .
lowQualScore : 0 00 2222 0 666 2 4 0 66 0 000000000000000000000000000000 6 4 0 9 2 6 7 3 3 7 3 7 00 333 7 5 88888888888 3 0 0 8 8 8 5 0 7 9999999999999 2 22 7777777777777 7777777777777 00 7 00 7 2 5555555 888888888888888888 88 555 55 2 2 2 0 2 5 2 0 2 5555 2 0 0
consensus : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATT--NTACACACACAAA-AAA--TCCC-------GCGAGGGGG---A----------TGCCCCCGGA-CNCCACTA-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCGA------AC-T-ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC--AT------------ATTTAG-------------CTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
Reference ( family-1381 ) : TGCTGATGTACACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATATAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATT--ATACACACACAAA-ANA--TCNC-------GCGGGGGGG---A----------TGCCCCCGGA-CACCACTA-GTTTCGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCGAATCGAGAC-T-ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGNATAACTAAACTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTAGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC--AT------------GTTTAG-------------CTCATAAGTCGNATTGCATCTAGCATTACCCAACCTGCTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGNNTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTATCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACGATTAAAA----AGTCACGAAAATAATATCAGCATCAATAGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCGT
gi|1 : TGCTGATGTGCACTGGCTGATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACCAACCTGATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--TATATA----TATATATCAATGGTATTAAATAAACGTTAAAA-CGCACCAGAGCCATT--GTACACACACAAA-AAA--TCAC-------GCGAAGGGGC--A----------TGCCCCTGGA-TACCACTA-GTGTTGGCATGCACA-TACAT-TT-TTTGGG--CTAGCTACGTCCCTGAATTGGTTATAC--ATCATCTTTT--------------ATTTCTTAAACAAAAACAATATTGTATAAACACAAATAAAGGCATTCCATACGCTTTATTATTCATCCATAAAACACAATTGAATAATT-----GTAGATTATGTTTGGTTTTTCATGTTTCCTATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAATGCAACAATCAATGACGTATTCGATCCAGGCGTATGGGCC--AT-------------TTTAG-------------CTCGTAAGTCGCTTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAA-CGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTGAAGTCAACACGACAAATTT-AAAGAAATGATTGTCTAAAAAGACAACAATCAGAAAGACATAGATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATC-GCATCAATCGATTGAAAGTAATAACATTTGAACATAAAATATGTACAATAGCGGAATAGAATTTTGAGCTGGCTGCCCTTCCA
gi|10 : CATGGTTGATATTTCACGTTTCCCATCTCGGATTTCCCCCTAAAGAA-CCTCTTAGAATACTCTCTATCAACAAGGAGCTTCCAAGGCGGTTACGGTAGTCTGATTAAGCAGAACGCAATAATCAATGACGTATGCGATCCGAGCGTATGGGCCCTATTGAGGTTTGC--ATTTAG-------------CTCATCAGTCGGATTGCATCTAGCATTAC
gi|11 : ATA----TATATATCAATGATATTAAATATAAGTCAAAA-CGCACAAGAGCCATT--AAACAGACA-AAA-AAA--TCCC-------GCGAGG--------------------------A-CACC-CTA-GCTTCGGCCTGCACA-TA-ACATT-TT-GGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCGAA-----ACAT-ATTTCTTAAA-AAAAATAATATTGCATTAA
gi|12 : aTATAAGTCAAAA-CGCACAAGCGCCCTTCAACATACACACAAACAAA--TCCG-------GTTGGGTGGAGAA----------TG-TCCCGGA-CCCCA-TA-GTCTGGACCTACGTATTA-AC-TT-TT-AGG--CTAGCTGCGC
gi|14 : atgaaaaaaaagcaggaaattctatgcctgttcaaaatgtgtttaagtatgtctcaagtagatcCCCTAAAGAAACCTCTTAGAATACTCTCTATCAACAAGGAGCTTCACAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTAGGCGATCCGAGCGTATGGGCC--ATATTGAGGATTGCATTTAG-------------CTCATAATTCGGATTGCATCTAGCATT
gi|15 : TAAA----TATGTGTCTATGTGATT-----TACGTCAAAA-CGCACCAGAGCCATT--CTTCACACA--AA-ACA--TTTTCAGGTATGTGGGGAGGC--A----------TGCACA-GGA-CCCTACTA-ATTTGGGCCTGCACA-TA-AC-TT-TT-AAG--CTAGCTgacac
gi|17 : ttatctaacaagaactattttgcttctgtcgtcactttGGCCTGCACA-TA-AT-TT-TC-AG
gi|2 : taacgtagctaccaagttaataggtcagTGCTGATGTACACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATATAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATAGATATATATATCAATGGTATTTAATATACGTTAAAA-CGCACCAGAGCCATT--ATACACACAAAAA-AAAA-TCAC-------GCGAGGGGGC--A----------TGTCCCTGGA-CCCCACTA-GTGTTGGCATGGACA-TA-ATGTT-TT-GGG--CTAGCAACGTCCCTGAATTGGTGATAC--GTCATCTTTTCGA---GA-AC-T-ATTTCTTAAA-TAAAAAAATATTGTATTTATACAAATAAAGGCATTTCATGCGCTTTATTATTCATCCATAAAACA--ATTGTATAACTAAATTGCAGATCATGTTTGGTATTTCATGTTTGCTATATTCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AG-AGCTTCCAAGGCTGTTACGATAGTCTTATTGAGCAAAACGCAACAATCAATGACGCATGCGATCCGAGCGTATGGGCC--AT-------------TTTAG-------------CTCATAAGTCGCTTTGCA----------CCCAACCTGCTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGGTTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTATCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCAGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGTTTGTGAGTGACGGATAGTAAAGTCAACACGAC-AATTAGGAAGATATA--TAT---AAATTACCACAATTAAAAAGAC----------------------------AGTCACGAAAATAATATCAGCATCAAAAGCTTGAAAGTAATAACATTTGAAATTACGATATGTACAATAGCGAAATAAAAATTTTACCTGGTTGCCCTTCCAaggcaactttttaagaaagttccattttatgtaaattatatcaatgaaatgtataaattatgtc
gi|3 : taatattatacctttataa---A----------TGCCCCTGGA-CCCCACTA-GTGCTGGCATGCACA-TA-AT-TT-TT-GGGGGCTAGCTACGTCCCTGAATTGGTGATAC--GTCATCTTTTCGA-----GACCT-ATTTCTTAAACAAAAAAAATATTGTATTAACACAAATAAAGGCATTCCATGCGCTTTATTTTTCATCCATAAAACACAGTTATACAACTAAATTGTA--------------TTTCATGTTTCCTATCTCCGATTTCCCACGAAAGAA-CCTATTGGAATA-------------AGAAGCTTCCAAGGCGGTTACGGTAGTCTGATTGAGCAAAACGCAACAATCAATGACGTATGTGATCCGAGCGTATGGGCC--AT-------------TTTAG-------------CTCATAAGTCGCTTTGCATCTAGAATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAATACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTAGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGCAA------TGCAATG------------ATTTCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAACATCAATCGCTTGAAAGTAATTACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTAGTTGCCCTTCCA
gi|4 : gcTA-GTTTCGGCCTGCACA-TA-AC-TTCTT-GGG--CTAGCTACGCCACTGAATTGGTGATAC--------------AAT------------TCTTCAA-AAAAAGAATATTGCATCAACACAAATGAAGGCATTCCATGTGCATTATTATTCATCCATAAAACACAACTGAATAACTAAATT-TAGTTCATGGTTGATATTTTATATTTTCC--CTCCGATTT--CCCTAAGGAA-CCTTTTAGAAT--------------ACTCTCTTCGAAGACGGCTGCGATAGTCTGGCTCAGCAGAACGGAACAAGCAATGACGTTGGCGATCCGAACGTACAGATT--A-------------GTTTGGATATTGCATCTATCTCGTAGACCGTATTGTATCTAACATTACCCaa
gi|5 : aagaggaaaaatgtattcgacaaattcaattcatgaatgtttagctgtatattcaataagtgatgtcgttgttttattctgttgttattttaaaaaatattggacgcccccaataccaagtccttcgttacgcccctgCAGATCTAGCTTTTTAGTTTCACAATCGTATTGGCAACTATCAACAAGCGTAACGCGGATTGCAGTAAACGGAATGCGCGTAACGCGGATTGCAGTAAATGGAATGCAATGTAGATCTACTGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTATCTAAAAAGACAACAATCAGGATGACATATATAAAGTACCACAATTAAAA----AGTCACGAAAATAATATCAGCACCAATAGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACATGGTTGCCCTTCCG
gi|6 : AAATATACGCCAAAA-CGCACCAGAGTTATT--ATAAACACACAAA-CAA--TCCC-------GAGAGGGAG---G----------TGCCCCTGGAACACC-CTA-GCTTCGGCCTGCACA-TA-AC-TT-TTTAGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCGA-----GAC-TTATTTCTTAAA-AAAT-TAATATTGCATTAACACAAATAAAGGCATTCCATGCACTTTATTATTCCTCCATTAAACACAATTGAATAACTAAATTGTAGTTCATGGTTGATATTTCATATTTCCCATCTCCGATTTTCCCCTAAAGAA-CCTCTTAGAATA-------------at
gi|7 : AAATAAACGTCAAAA-TGCACCACAGCCATT--CAACACAtcc
gi|7 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgaATTAA-TATACGTTAAA--TGCACCACAGCCATT--ATACACAC--AAA-AAAGCTCCC-------CC-----------------------CCTCCGGA-CACCACTA-GTTTGGGCCTGCACA-TA-AT-GT-TT-AGG--CTAGCTACACCCCTGgcgacatgcaaaaattaatatacgttaaatgcaccacagccattatacacacaaaaaagctccccccctccggacaccactagtttgggcctgcacataatgtttaggctagctacacccctg
gi|8 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgatgtgttgaatggctgtggtgcattttgacgtttatttgcgacatgcaaaaGTCTCAAATATACGTCAAAAATGCACCAGAGCCATT--CTACACACA-ACA-CTT--TTTCAGGGGG-GTGGGGGGG---GGGTGGGGGGGTGCCCCCGGA-C-CTCCTGTATTTGGGCCTGTACA-TA-AC-AT-TT-AGG--CTAGCTACGCCCCTG
gi|9 : agtagcatagctaccttataagcctaacgtcccaggtctgcacataattttgagaggtaagtttttacaaaaattaaaaaataaattaggttcaaaatgtatttaattatGTCTCAAATATACGCCAAAG-TGCACCAGAACCATT--CT--ACACACAAA-ATA--TTTC--------CGAGGGGG---------------------------CCA-TG-GTT---ACATGCACG-TA-AC-TT-TT-AGG--CTAGg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGTCGCTCGAGTAATTATTGATTCTGCTTCAAAGAGTAAATTTGTATTCTGCATAATTAATTCATGGAAGTATATTAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATTTTTGGACGCCCCAATACCAAATATTTCGTTACGCCCCTGCATTT
Unaligned ( gi|16 ): AAATAGGCACAAAGGCGCGGTCCTGCACATAATTTTCAGAGACACTTTGTTTAGTTTAGTGTGTTGAACCTATTCAAAAACTAAAAAATAAATTAGGTTCAAAATATGTTTAATTATGTCTCAAATATACGGCA
Unaligned ( gi|18 ): GTAGCATAGCTACCCAATAGGCCCAAGGGCCCAGGCT
Alignments
lowQualScore : 11 2222 1111 1111111111 44444444444444444444 111 3333333333333 1 6666666666666 9999999999999999999999 11111 3333333 777777777777777777 11 111 1 1111
lowQualScore : 1 88 1111 4 1 55 6 4 3333 5555555555 0 00000000000000000000 1 6 3 2 6 55 3 2 3 3 6 3 6 55 999 3 9999999999999 3 1 1 3 2 1 5 2222222222222 5 1111111111111111111111 66666 0 22 0 3 2222222 333333333333333333 33 777 33 3 0 3 0 3 2 3 3 3 3 7777 3 1
lowQualScore : . .. .... . . .. . . .... .......... . .................... . . . . . .. . . . . . . . .. ... . ............. . . . . . . . ............. . ...................... ..... . .. . . ....... .................. .. ... .. . . . . . . . . . . .... . .
lowQualScore : 0 00 2222 0 0 55 7 4 9999 1111111111 1 00000000000000000000 6 4 6 3 5 00 6 3 3 3 7 3 7 00 333 7 8888888888888 3 0 4 8 5 0 7 9999999999999 2 7777777777777777777777 77777 7 00 7 2 5555555 888888888888888888 88 555 55 2 2 2 0 2 5 2 0 2 2 2222 2 0
consensus : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCG-A--A--C-T-ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC-------AT------------ATT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
Reference ( family-1381 ) : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCG-A--A--C-T-ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC-------AT------------ATT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
gi|1 : TGCTGATGTGCACTGGCTGATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACCAACCTGATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--TATATA----TATATATCAATGGTATTAAATAAACGTTAAAA-CGCACCAGAGCCATTGTAC--ACACACAAA-AAA----TCA---C------GCGAAG---------------GGGCATGCCCCTGGA-TACCACT--A-GTGTTGGCATGCACA-TACAT-TT-TTTGGG--CTAGCTACGTCCCTGAATTGGTTATAC--ATCATCTTTT-------------ATTTCTTAAACAAAAACAATATTGTATAAACACAAATAAAGGCATTCCATACGCTTTATTATTCATCCATAAAACACAATTGAATAA-----TTGTAGATTATGTTTGGTTTTTCATGTTTCCTATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAATGCAACAATCAATGACGTATTCGATCCAGGCGTATGGGCC-------AT-------------TT-----TAGCTCGTAAGTCGCTTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAA-CGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTGAAGTCAACACGACAAATTT-AAAGAAATGATTGTCTAAAAAGACAACAATCAGAAAGACATAGATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATC-GCATCAATCGATTGAAAGTAATAACATTTGAACATAAAATATGTACAATAGCGGAATAGAATTTTGAGCTGGCTGCCCTTCCAT
gi|10 : CATGGTTGATATTTCACGTTTCCCATCTCGGATTTCCCCCTAAAGAA-CCTCTTAGAATACTCTCTATCAACAAGGAGCTTCCAAGGCGGTTACGGTAGTCTGATTAAGCAGAACGCAATAATCAATGACGTATGCGATCCGAGCGTATGGGCCCT-----ATTGAGGTTTGC--ATT-----TAGCTCATCAGTCGGATTGCATCTAGCATTAC
gi|11 : ATA----TATATATCAATGATATTAAATATAAGTCAAAA-CGCACAAGAGCCATTAAAC--AGACA-AAA-AAA----TCC---C------GCGAGG-----------------------------A-CACC-CT--A-GCTTCGGCCTGCACA-TA-ACATT-TT-GGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCGAA--A--CAT-ATTTCTTAAA-AAAAATAATATTGCATTAA
gi|12 : aTATAAGTCAAAA-CGCACAAGCGCCCTTCAACATACACACAAACAAA----TCCGGTT------GGGTGG---------------AGA-ATG-TCCCGGA-CCCCA-T--A-GTCTGGACCTACGTATTA-AC-TT-TT-AGG--CTAGCTGCGC
gi|14 : atgaaaaaaaagcaggaaattctatgcctgttcaaaatgtgtttaagtatgtctcaagtagatcCCCTAAAGAAACCTCTTAGAATACTCTCTATCAACAAGGAGCTTCACAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTAGGCGATCCGAGCGTATGGGCC-------ATATTGAGGATTGCATT-----TAGCTCATAATTCGGATTGCATCTAGCATT
gi|15 : TAAA----TATGTGTCTATGTGATT-----TACGTCAAAA-CGCACCAGAGCCATTCTTC--ACACA-AAA-CAT----TTT---CAGGTATGTGGGG---------------AGGCATGCACA-GGA-CCCTACT--A-ATTTGGGCCTGCACA-TA-AC-TT-TT-AAG--CTAGCTgacac
gi|17 : ttatctaacaagaactattttgcttctgtcgtcactttGGCCTGCACA-TA-AT-TT-TC-AG
gi|2 : taacgtagctaccaagttaataggtcagTGCTGATGTACACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATATAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATAGATATATATATCAATGGTATTTAATATACGTTAAAA-CGCACCAGAGCCATTATAC--ACACAAAAA-AAAA---TCA---C------GCGAGG---------------GGGCATGTCCCTGGA-CCCCACT--A-GTGTTGGCATGGACA-TA-ATGTT-TT-GGG--CTAGCAACGTCCCTGAATTGGTGATAC--GTCATCTTTTCG-AGAA--C-T-ATTTCTTAAA-TAAAAAAATATTGTATTTATACAAATAAAGGCATTTCATGCGCTTTATTATTCATCCATAAAACA--ATTGTATAACTAAATTGCAGATCATGTTTGGTATTTCATGTTTGCTATATTCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AG-AGCTTCCAAGGCTGTTACGATAGTCTTATTGAGCAAAACGCAACAATCAATGACGCATGCGATCCGAGCGTATGGGCC-------AT-------------TT-----TAGCTCATAAGTCGCTTTGCA----------CCCAACCTGCTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGGTTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTATCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCAGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGTTTGTGAGTGACGGATAGTAAAGTCAACACGAC-AATTAGGAAGATATA--TAT---AAATTACCACAATTAAAAAGAC--------AGT--CACGA------------------AAATAATATCAGCATCAAAAGCTTGAAAGTAATAACATTTGAAATTACGATATGTACAATAGCGAAATAAAAATTTTACCTGGTTGCCCTTCCATaggcaactttttaagaaagttccattttatgtaaattatatcaatgaaatgtataaattatgtc
gi|3 : taatattatacctttataa-ATGCCCCTGGA-CCCCACT--A-GTGCTGGCATGCACA-TA-AT-TT-TT-GGGGGCTAGCTACGTCCCTGAATTGGTGATAC--GTCATCTTTTCG-A--GACC-T-ATTTCTTAAACAAAAAAAATATTGTATTAACACAAATAAAGGCATTCCATGCGCTTTATTTTTCATCCATAAAACACAGTTATACAACTAAATTGTA--------------TTTCATGTTTCCTATCTCCGATTTCCCACGAAAGAA-CCTATTGGAATA-------------AGAAGCTTCCAAGGCGGTTACGGTAGTCTGATTGAGCAAAACGCAACAATCAATGACGTATGTGATCCGAGCGTATGGGCC-------AT-------------TT-----TAGCTCATAAGTCGCTTTGCATCTAGAATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAATACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTAGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGCAA------TGCAATG------------ATTTCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAACATCAATCGCTTGAAAGTAATTACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTAGTTGCCCTTCCAT
gi|4 : gcA-CGCCCCTGTA-GTTTCGGCCTGCACA-TA-AC-TTCTT-GGG--CTAGCTACGCCACTGAATTGGTGATAC---------------A--A--------TTCTTCAA-AAAAAGAATATTGCATCAACACAAATGAAGGCATTCCATGTGCATTATTATTCATCCATAAAACACAACTGAATAACTAAATT-TAGTTCATGGTTGATATTTTATATTTTCC--CTCCGATTT--CCCTAAGGAA-CCTTTTAGAAT--------------ACTCTCTTCGAAGACGGCTGCGATAGTCTGGCTCAGCAGAACGGAACAAGCAATGACGTTGGCGATCCGAACGTACAGATTAGTTTGGAT------------ATTGCATCTATCTCGTAGACCGTATTGTATCTAACATTACCCaa
gi|5 : aagaggaaaaatgtattcgacaaattcaattcatgaatgtttagctgtatattcaataagtgatgtcgttgttttattctgttgttattttaaaaaatattggacgcccccaataccaagtccttcgttCAGATCTAGCTTTTTAGTTTCACAATCGTATTGGCAACTATCAACAAGCGTAACGCGGATTGCAGTAAACGGAATGCGCGTAACGCGGATTGCAGTAAATGGAATGCAATGTAGATCTACTGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTATCTAAAAAGACAACAATCAGGATGACATATATAAAGTACCACAATTAAAA----AGTCACGAAAATAATATCAGCACCAATAGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACATGGTTGCCCTTCCGT
gi|6 : AAATATACGCCAAAA-CGCACCAGAGTTATTATAA--ACACACAAA-CAA----TCC---C------GAGAGG---------------GAG-GTGCCCCTGGAACACC-CT--A-GCTTCGGCCTGCACA-TA-AC-TT-TTTAGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCG-AG-A--C-TTATTTCTTAAA-AAAT-TAATATTGCATTAACACAAATAAAGGCATTCCATGCACTTTATTATTCCTCCATTAAACACAATTGAATAACTAAATTGTAGTTCATGGTTGATATTTCATATTTCCCATCTCCGATTTTCCCCTAAAGAA-CCTCTTAGAATA-------------at
gi|7 : AAATAAACGTCAAAA-TGCACCACAGCCATTCAAC--ACAtcc
gi|7 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgaATTAA-TATACGTTAAA--TGCACCACAGCCATTATAC--ACACAAAAA-AGC----TCC---C------CC--------------------------CCTCCGGA-CACCACT--A-GTTTGGGCCTGCACA-TA-AT-GT-TT-AGG--CTAGCTACACCCCTGgcgacatgcaaaaattaatatacgttaaatgcaccacagccattatacacacaaaaaagctccccccctccggacaccactagtttgggcctgcacataatgtttaggctagctacacccctg
gi|8 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgatgtgttgaatggctgtggtgcattttgacgtttatttgcgacatgcaaaaGTCTCAAATATACGTCAAAAATGCACCAGAGCCATTCTA------CACACA-ACACTTTTTC---A------GGGGGGTGGGGGGGGGGTGGGGGG-GTGCCCCCGGA-CCTC-CT--GTATTTGGGCCTGTACA-TA-AC-AT-TT-AGG--CTAGCTACGCCCCTG
gi|9 : agtagcatagctaccttataagcctaacgtcccaggtctgcacataattttgagaggtaagtttttacaaaaattaaaaaataaattaggttcaaaatgtatttaattatGTCTCAAATATACGCCAAAG-TGCACCAGAACCATTCT----ACACACAAA-ATA----TTT---C-------CGAGG---------------GGG---------------CCA-T--G-GTT---ACATGCACG-TA-AC-TT-TT-AGG--CTAGg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGTCGCTCGAGTAATTATTGATTCTGCTTCAAAGAGTAAATTTGTATTCTGCATAATTAATTCATGGAAGTATATTAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATTTTTGGACGCCCCAATACCAAATATTTCGTTACGCCCCTGCATTT
Unaligned ( gi|16 ): AAATAGGCACAAAGGCGCGGTCCTGCACATAATTTTCAGAGACACTTTGTTTAGTTTAGTGTGTTGAACCTATTCAAAAACTAAAAAATAAATTAGGTTCAAAATATGTTTAATTATGTCTCAAATATACGGCA
Unaligned ( gi|18 ): GTAGCATAGCTACCCAATAGGCCCAAGGGCCCAGGCT
Alignments
lowQualScore : 11 2222 1111 1111111111 44444444444444444444 111 3333333333333 1 6666666666666 9999999999999999999999 11111 3333333 777777777777777777 11 111 1 1111
lowQualScore : 1 88 1111 4 1 55 6 4 3333 5555555555 0 00000000000000000000 1 6 3 2 6 55 3 2 3 3 6 3 6 55 999 3 9999999999999 3 1 1 3 2 1 5 2222222222222 5 1111111111111111111111 66666 0 22 0 3 2222222 333333333333333333 33 777 33 3 0 3 0 3 2 3 3 3 3 7777 3 1
lowQualScore : . .. .... . . .. . . .... .......... . .................... . . . . . .. . . . . . . . .. ... . ............. . . . . . . . ............. . ...................... ..... . .. . . ....... .................. .. ... .. . . . . . . . . . . .... . .
lowQualScore : 0 00 2222 0 0 55 7 4 9999 1111111111 1 00000000000000000000 6 4 6 3 5 00 6 3 3 3 7 3 7 00 333 7 8888888888888 3 0 4 8 5 0 7 9999999999999 2 7777777777777777777777 77777 7 00 7 2 5555555 888888888888888888 88 555 55 2 2 2 0 2 5 2 0 2 2 2222 2 0
consensus : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCG-A--A--C-T-ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC-------AT------------ATT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
Reference ( family-1381 ) : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCG-A--A--C-T-ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC-------AT------------ATT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
gi|1 : TGCTGATGTGCACTGGCTGATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACCAACCTGATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--TATATA----TATATATCAATGGTATTAAATAAACGTTAAAA-CGCACCAGAGCCATTGTAC--ACACACAAA-AAA----TCA---C------GCGAAG---------------GGGCATGCCCCTGGA-TACCACT--A-GTGTTGGCATGCACA-TACAT-TT-TTTGGG--CTAGCTACGTCCCTGAATTGGTTATAC--ATCATCTTTT-------------ATTTCTTAAACAAAAACAATATTGTATAAACACAAATAAAGGCATTCCATACGCTTTATTATTCATCCATAAAACACAATTGAATAA-----TTGTAGATTATGTTTGGTTTTTCATGTTTCCTATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAATGCAACAATCAATGACGTATTCGATCCAGGCGTATGGGCC-------AT-------------TT-----TAGCTCGTAAGTCGCTTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAA-CGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTGAAGTCAACACGACAAATTT-AAAGAAATGATTGTCTAAAAAGACAACAATCAGAAAGACATAGATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATC-GCATCAATCGATTGAAAGTAATAACATTTGAACATAAAATATGTACAATAGCGGAATAGAATTTTGAGCTGGCTGCCCTTCCAT
gi|10 : CATGGTTGATATTTCACGTTTCCCATCTCGGATTTCCCCCTAAAGAA-CCTCTTAGAATACTCTCTATCAACAAGGAGCTTCCAAGGCGGTTACGGTAGTCTGATTAAGCAGAACGCAATAATCAATGACGTATGCGATCCGAGCGTATGGGCCCT-----ATTGAGGTTTGC--ATT-----TAGCTCATCAGTCGGATTGCATCTAGCATTAC
gi|11 : ATA----TATATATCAATGATATTAAATATAAGTCAAAA-CGCACAAGAGCCATTAAAC--AGACA-AAA-AAA----TCC---C------GCGAGG-----------------------------A-CACC-CT--A-GCTTCGGCCTGCACA-TA-ACATT-TT-GGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCGAA--A--CAT-ATTTCTTAAA-AAAAATAATATTGCATTAA
gi|12 : aTATAAGTCAAAA-CGCACAAGCGCCCTTCAACATACACACAAACAAA----TCCGGTT------GGGTGG---------------AGA-ATG-TCCCGGA-CCCCA-T--A-GTCTGGACCTACGTATTA-AC-TT-TT-AGG--CTAGCTGCGC
gi|14 : atgaaaaaaaagcaggaaattctatgcctgttcaaaatgtgtttaagtatgtctcaagtagatcCCCTAAAGAAACCTCTTAGAATACTCTCTATCAACAAGGAGCTTCACAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTAGGCGATCCGAGCGTATGGGCC-------ATATTGAGGATTGCATT-----TAGCTCATAATTCGGATTGCATCTAGCATT
gi|15 : TAAA----TATGTGTCTATGTGATT-----TACGTCAAAA-CGCACCAGAGCCATTCTTC--ACACA-AAA-CAT----TTT---CAGGTATGTGGGG---------------AGGCATGCACA-GGA-CCCTACT--A-ATTTGGGCCTGCACA-TA-AC-TT-TT-AAG--CTAGCTgacac
gi|17 : ttatctaacaagaactattttgcttctgtcgtcactttGGCCTGCACA-TA-AT-TT-TC-AG
gi|2 : taacgtagctaccaagttaataggtcagTGCTGATGTACACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATATAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATAGATATATATATCAATGGTATTTAATATACGTTAAAA-CGCACCAGAGCCATTATAC--ACACAAAAA-AAAA---TCA---C------GCGAGG---------------GGGCATGTCCCTGGA-CCCCACT--A-GTGTTGGCATGGACA-TA-ATGTT-TT-GGG--CTAGCAACGTCCCTGAATTGGTGATAC--GTCATCTTTTCG-AGAA--C-T-ATTTCTTAAA-TAAAAAAATATTGTATTTATACAAATAAAGGCATTTCATGCGCTTTATTATTCATCCATAAAACA--ATTGTATAACTAAATTGCAGATCATGTTTGGTATTTCATGTTTGCTATATTCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AG-AGCTTCCAAGGCTGTTACGATAGTCTTATTGAGCAAAACGCAACAATCAATGACGCATGCGATCCGAGCGTATGGGCC-------AT-------------TT-----TAGCTCATAAGTCGCTTTGCA----------CCCAACCTGCTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGGTTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTATCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCAGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGTTTGTGAGTGACGGATAGTAAAGTCAACACGAC-AATTAGGAAGATATA--TAT---AAATTACCACAATTAAAAAGAC--------AGT--CACGA------------------AAATAATATCAGCATCAAAAGCTTGAAAGTAATAACATTTGAAATTACGATATGTACAATAGCGAAATAAAAATTTTACCTGGTTGCCCTTCCATaggcaactttttaagaaagttccattttatgtaaattatatcaatgaaatgtataaattatgtc
gi|3 : taatattatacctttataa-ATGCCCCTGGA-CCCCACT--A-GTGCTGGCATGCACA-TA-AT-TT-TT-GGGGGCTAGCTACGTCCCTGAATTGGTGATAC--GTCATCTTTTCG-A--GACC-T-ATTTCTTAAACAAAAAAAATATTGTATTAACACAAATAAAGGCATTCCATGCGCTTTATTTTTCATCCATAAAACACAGTTATACAACTAAATTGTA--------------TTTCATGTTTCCTATCTCCGATTTCCCACGAAAGAA-CCTATTGGAATA-------------AGAAGCTTCCAAGGCGGTTACGGTAGTCTGATTGAGCAAAACGCAACAATCAATGACGTATGTGATCCGAGCGTATGGGCC-------AT-------------TT-----TAGCTCATAAGTCGCTTTGCATCTAGAATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAATACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTAGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGCAA------TGCAATG------------ATTTCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAACATCAATCGCTTGAAAGTAATTACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTAGTTGCCCTTCCAT
gi|4 : gcA-CGCCCCTGTA-GTTTCGGCCTGCACA-TA-AC-TTCTT-GGG--CTAGCTACGCCACTGAATTGGTGATAC---------------A--A--------TTCTTCAA-AAAAAGAATATTGCATCAACACAAATGAAGGCATTCCATGTGCATTATTATTCATCCATAAAACACAACTGAATAACTAAATT-TAGTTCATGGTTGATATTTTATATTTTCC--CTCCGATTT--CCCTAAGGAA-CCTTTTAGAAT--------------ACTCTCTTCGAAGACGGCTGCGATAGTCTGGCTCAGCAGAACGGAACAAGCAATGACGTTGGCGATCCGAACGTACAGATTAGTTTGGAT------------ATTGCATCTATCTCGTAGACCGTATTGTATCTAACATTACCCaa
gi|5 : aagaggaaaaatgtattcgacaaattcaattcatgaatgtttagctgtatattcaataagtgatgtcgttgttttattctgttgttattttaaaaaatattggacgcccccaataccaagtccttcgttCAGATCTAGCTTTTTAGTTTCACAATCGTATTGGCAACTATCAACAAGCGTAACGCGGATTGCAGTAAACGGAATGCGCGTAACGCGGATTGCAGTAAATGGAATGCAATGTAGATCTACTGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTATCTAAAAAGACAACAATCAGGATGACATATATAAAGTACCACAATTAAAA----AGTCACGAAAATAATATCAGCACCAATAGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACATGGTTGCCCTTCCGT
gi|6 : AAATATACGCCAAAA-CGCACCAGAGTTATTATAA--ACACACAAA-CAA----TCC---C------GAGAGG---------------GAG-GTGCCCCTGGAACACC-CT--A-GCTTCGGCCTGCACA-TA-AC-TT-TTTAGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCG-AG-A--C-TTATTTCTTAAA-AAAT-TAATATTGCATTAACACAAATAAAGGCATTCCATGCACTTTATTATTCCTCCATTAAACACAATTGAATAACTAAATTGTAGTTCATGGTTGATATTTCATATTTCCCATCTCCGATTTTCCCCTAAAGAA-CCTCTTAGAATA-------------at
gi|7 : AAATAAACGTCAAAA-TGCACCACAGCCATTCAAC--ACAtcc
gi|7 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgaATTAA-TATACGTTAAA--TGCACCACAGCCATTATAC--ACACAAAAA-AGC----TCC---C------CC--------------------------CCTCCGGA-CACCACT--A-GTTTGGGCCTGCACA-TA-AT-GT-TT-AGG--CTAGCTACACCCCTGgcgacatgcaaaaattaatatacgttaaatgcaccacagccattatacacacaaaaaagctccccccctccggacaccactagtttgggcctgcacataatgtttaggctagctacacccctg
gi|8 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgatgtgttgaatggctgtggtgcattttgacgtttatttgcgacatgcaaaaGTCTCAAATATACGTCAAAAATGCACCAGAGCCATTCTA------CACACA-ACACTTTTTC---A------GGGGGGTGGGGGGGGGGTGGGGGG-GTGCCCCCGGA-CCTC-CT--GTATTTGGGCCTGTACA-TA-AC-AT-TT-AGG--CTAGCTACGCCCCTG
gi|9 : agtagcatagctaccttataagcctaacgtcccaggtctgcacataattttgagaggtaagtttttacaaaaattaaaaaataaattaggttcaaaatgtatttaattatGTCTCAAATATACGCCAAAG-TGCACCAGAACCATTCT----ACACACAAA-ATA----TTT---C-------CGAGG---------------GGG---------------CCA-T--G-GTT---ACATGCACG-TA-AC-TT-TT-AGG--CTAGg
blockSeqs : A GA GATA A A AT C C CTTT CAGGTAT TGGGGGGGGGGTGGGGGGG C C A A A GT T C T . A C T GG ATG T CGAAACAT C T T A G C A CTCTCTATCAACA G CTATTGAGGTTTGCA GCATC GA T AACTATC GTAACGCGGATTGCAGTA GG TGC AC T A G A C A T A T AGAC A A
blockSeqs : . . C . A . A GGTT AGGCA T T . C A . . G . . G . . . ATG A CGAGAACT . A T T T C . CTCTCTATCAACA G ATATTGAGGATTGCA . GA T . . . . AT T A . A C A T A T . A C
blockSeqs : . . C . C . . C GGGCA C T . C A . . G . . . . . . G A CGAGACCT . A A T G C . . A AGTTTGGATA . CT T . . . . . . . . . . . . . . . A A
blockSeqs : . A . A . . C AGAA C T . C A . . T . . . . . . G T CGAGACTT . G A . G T . . T AT . CT
blockSeqs : . A . C . . C GAGG C C . C C . . T . . . . . . . . AA . T . . . . . AT . TA
blockSeqs : . C . C . . C GGG C C . G A . . C . . . . . . . .
blockSeqs : . A . . . . A . . . . A A . . C . . . . . .
blockSeqs : . C . . . . C . . . . A . . . G . . . . . .
blockSeqs : . C . . . . C . . . G . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CGAGACCT***** ATTTGGTA**************
originalCons : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCG-A--A--C-T-ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCC-------AT------------ATT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
finalCons : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCGAGACCT-----ATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCCATTTGGTA--------------TT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGTCGCTCGAGTAATTATTGATTCTGCTTCAAAGAGTAAATTTGTATTCTGCATAATTAATTCATGGAAGTATATTAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATTTTTGGACGCCCCAATACCAAATATTTCGTTACGCCCCTGCATTT
Unaligned ( gi|16 ): AAATAGGCACAAAGGCGCGGTCCTGCACATAATTTTCAGAGACACTTTGTTTAGTTTAGTGTGTTGAACCTATTCAAAAACTAAAAAATAAATTAGGTTCAAAATATGTTTAATTATGTCTCAAATATACGGCA
Unaligned ( gi|18 ): GTAGCATAGCTACCCAATAGGCCCAAGGGCCCAGGCT
Alignments
lowQualScore : 11 2222 1111 1111111111 44444444444444444444 111 1 6666666666666 1 999999999999999999 3333333 777777777777777777 11 111 1 1111
lowQualScore : 1 88 1111 4 1 55 6 4 3333 5555555555 0 00000000000000000000 1 6 3 2 6 55 3 2 3 3 6 3 6 55 999 3 2 1 77 3 1 1 3 2 1 5 2222222222222 5 6 3 666666666666666666 0 22 0 3 2222222 333333333333333333 33 777 33 3 0 3 0 3 2 3 3 3 3 7777 3 1
lowQualScore : . .. .... . . .. . . .... .......... . .................... . . . . . .. . . . . . . . .. ... . . . .. . . . . . . . ............. . . . .................. . .. . . ....... .................. .. ... .. . . . . . . . . . . .... . .
lowQualScore : 0 00 2222 0 0 55 7 4 9999 1111111111 1 00000000000000000000 6 4 6 3 5 00 6 3 3 3 7 3 7 00 333 7 5 0 77 3 0 4 8 5 0 7 9999999999999 2 7 3 222222222222222222 7 00 7 2 5555555 888888888888888888 88 555 55 2 2 2 0 2 5 2 0 2 2 2222 2 0
consensus : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCGAGACCTATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCCA-T-TTG------G-CATT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
Reference ( family-1381 ) : TGCTGATGTGCACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATNTAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATA----TATATATCAATGGTATTAAATATACGTCAAAA-CGCACCAGAGCCATTNTAC--ACACACAAA-AAA----TCC---C------GCGAGG---------------GGG-ATGCCCCCGGA-CNCCACT--A-GTTTNGGCCTGCACA-TA-AC-TT-TT-AGG--CTAGCTACGCCCCTGAATTGGTGATAC--GTCATCTTTTCGAGACCTATTTCTTAAA-AAAAANAATATTGCATTAACACAAATAAAGGCATTCCATGCGCTTTATTATTCATCCATAAAACACAATTGAATAACTAAATTGTAGNTCATGGTTGATATTTCATGTTTCCCATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTATGCGATCCGAGCGTATGGGCCA-T-TTG------G-TATT-----TAGCTCGTAAGTCGCNTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAGCATCAATNGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTGGTTGCCCTTCCAT
gi|1 : TGCTGATGTGCACTGGCTGATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACCAACCTGATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--TATATA----TATATATCAATGGTATTAAATAAACGTTAAAA-CGCACCAGAGCCATTGTAC--ACACACAAA-AAA----TCA---C------GCGAAG---------------GGGCATGCCCCTGGA-TACCACT--A-GTGTTGGCATGCACA-TACAT-TT-TTTGGG--CTAGCTACGTCCCTGAATTGGTTATAC--ATCATCTTTT--------ATTTCTTAAACAAAAACAATATTGTATAAACACAAATAAAGGCATTCCATACGCTTTATTATTCATCCATAAAACACAATTGAATAA-----TTGTAGATTATGTTTGGTTTTTCATGTTTCCTATCTCCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AGGAGCTTCCAAGGCGGTTACGATAGTCTGATTGAGCAGAATGCAACAATCAATGACGTATTCGATCCAGGCGTATGGGCCA-T-TT------------------TAGCTCGTAAGTCGCTTTGCATCTAGCATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAA-CGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGATTGCGAGTGTCGGATAGTGAAGTCAACACGACAAATTT-AAAGAAATGATTGTCTAAAAAGACAACAATCAGAAAGACATAGATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATC-GCATCAATCGATTGAAAGTAATAACATTTGAACATAAAATATGTACAATAGCGGAATAGAATTTTGAGCTGGCTGCCCTTCCAT
gi|10 : CATGGTTGATATTTCACGTTTCCCATCTCGGATTTCCCCCTAAAGAA-CCTCTTAGAATACTCTCTATCAACAAGGAGCTTCCAAGGCGGTTACGGTAGTCTGATTAAGCAGAACGCAATAATCAATGACGTATGCGATCCGAGCGTATGGGCCC-TATTGAGGTTTG-CATT-----TAGCTCATCAGTCGGATTGCATCTAGCATTAC
gi|11 : ATA----TATATATCAATGATATTAAATATAAGTCAAAA-CGCACAAGAGCCATTAAAC--AGACA-AAA-AAA----TCC---C------GCGAGG-----------------------------A-CACC-CT--A-GCTTCGGCCTGCACA-TA-ACATT-TT-GGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCGAAACATATTTCTTAAA-AAAAATAATATTGCATTAA
gi|12 : aTATAAGTCAAAA-CGCACAAGCGCCCTTCAACATACACACAAACAAA----TCCGGTT------GGGTGG---------------AGA-ATG-TCCCGGA-CCCCA-T--A-GTCTGGACCTACGTATTA-AC-TT-TT-AGG--CTAGCTGCGC
gi|14 : atgaaaaaaaagcaggaaattctatgcctgttcaaaatgtgtttaagtatgtctcaagtagatcCCCTAAAGAAACCTCTTAGAATACTCTCTATCAACAAGGAGCTTCACAGGCGGTTACGATAGTCTGATTGAGCAGAACGCAACAATCAATGACGTAGGCGATCCGAGCGTATGGGCCA-TATTGAGGATTG-CATT-----TAGCTCATAATTCGGATTGCATCTAGCATT
gi|15 : TAAA----TATGTGTCTATGTGATT-----TACGTCAAAA-CGCACCAGAGCCATTCTTC--ACACA-AAA-CAT----TTT---CAGGTATGTGGGG---------------AGGCATGCACA-GGA-CCCTACT--A-ATTTGGGCCTGCACA-TA-AC-TT-TT-AAG--CTAGCTgacac
gi|17 : ttatctaacaagaactattttgcttctgtcgtcactttGGCCTGCACA-TA-AT-TT-TC-AG
gi|2 : taacgtagctaccaagttaataggtcagTGCTGATGTACACTGGCTGATGTTTACTTTCTGCATTGTTAGATCAATTTACTGGTGCAATCCGCCATTGGACCAACCTGATATAGAAAAAAAGATACAGTACTATCTGCATTGTTAGATCCATTTTCTGGTGCTATAGATATATAGATATATATATCAATGGTATTTAATATACGTTAAAA-CGCACCAGAGCCATTATAC--ACACAAAAA-AAAA---TCA---C------GCGAGG---------------GGGCATGTCCCTGGA-CCCCACT--A-GTGTTGGCATGGACA-TA-ATGTT-TT-GGG--CTAGCAACGTCCCTGAATTGGTGATAC--GTCATCTTTTCGAGAACTATTTCTTAAA-TAAAAAAATATTGTATTTATACAAATAAAGGCATTTCATGCGCTTTATTATTCATCCATAAAACA--ATTGTATAACTAAATTGCAGATCATGTTTGGTATTTCATGTTTGCTATATTCGATTTCCCCCTAAAGAA-CCTCTTGGAATA-------------AG-AGCTTCCAAGGCTGTTACGATAGTCTTATTGAGCAAAACGCAACAATCAATGACGCATGCGATCCGAGCGTATGGGCCA-T-TT------------------TAGCTCATAAGTCGCTTTGCA----------CCCAACCTGCTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGGTTGGAAAAAAGTACCGTCACACCGTTTACAAACAGAGCTATCTTTTTAGTTTCACAATCGAATTGGC-------AACTAGC------------------AAC--AA---GCGTAACGCAGATTGCAGTAAACGGAATGCAATGTAGATCTACCGGTTTGTGAGTGACGGATAGTAAAGTCAACACGAC-AATTAGGAAGATATA--TAT---AAATTACCACAATTAAAAAGAC--------AGT--CACGA------------------AAATAATATCAGCATCAAAAGCTTGAAAGTAATAACATTTGAAATTACGATATGTACAATAGCGAAATAAAAATTTTACCTGGTTGCCCTTCCATaggcaactttttaagaaagttccattttatgtaaattatatcaatgaaatgtataaattatgtc
gi|3 : taatattatacctttataa-ATGCCCCTGGA-CCCCACT--A-GTGCTGGCATGCACA-TA-AT-TT-TT-GGGGGCTAGCTACGTCCCTGAATTGGTGATAC--GTCATCTTTTCGAGACCTATTTCTTAAACAAAAAAAATATTGTATTAACACAAATAAAGGCATTCCATGCGCTTTATTTTTCATCCATAAAACACAGTTATACAACTAAATTGTA--------------TTTCATGTTTCCTATCTCCGATTTCCCACGAAAGAA-CCTATTGGAATA-------------AGAAGCTTCCAAGGCGGTTACGGTAGTCTGATTGAGCAAAACGCAACAATCAATGACGTATGTGATCCGAGCGTATGGGCCA-T-TT------------------TAGCTCATAAGTCGCTTTGCATCTAGAATTACCCAACCTGTTTCGGCGGAAATTTCCTATAGCGTTTAAGTTGTGTGGAAAAAAATACCGTCACGCCGTTTACAAACAGAGCTAGCTTTTTAGTTTCACAATCGAATTAGC-------AACTAGC------------------AAC--AA---GCGTAACGCGGATTGCAGCAA------TGCAATG------------ATTTCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTGTCTAAAAAGACAACAATCAGGAAGACATATATAAAGTACCACAATTAAAAAGACAGTCACGAAAATAATATCAACATCAATCGCTTGAAAGTAATTACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACCTAGTTGCCCTTCCAT
gi|4 : gcA-CGCCCCTGTA-GTTTCGGCCTGCACA-TA-AC-TTCTT-GGG--CTAGCTACGCCACTGAATTGGTGATAC--------------------AATTCTTCAA-AAAAAGAATATTGCATCAACACAAATGAAGGCATTCCATGTGCATTATTATTCATCCATAAAACACAACTGAATAACTAAATT-TAGTTCATGGTTGATATTTTATATTTTCC--CTCCGATTT--CCCTAAGGAA-CCTTTTAGAAT--------------ACTCTCTTCGAAGACGGCTGCGATAGTCTGGCTCAGCAGAACGGAACAAGCAATGACGTTGGCGATCCGAACGTACAGATTAGT-TTG------GATATTGCATCTATCTCGTAGACCGTATTGTATCTAACATTACCCaa
gi|5 : aagaggaaaaatgtattcgacaaattcaattcatgaatgtttagctgtatattcaataagtgatgtcgttgttttattctgttgttattttaaaaaatattggacgcccccaataccaagtccttcgttCAGATCTAGCTTTTTAGTTTCACAATCGTATTGGCAACTATCAACAAGCGTAACGCGGATTGCAGTAAACGGAATGCGCGTAACGCGGATTGCAGTAAATGGAATGCAATGTAGATCTACTGGATTGCGAGTGTCGGATAGTAAAGTCAACACGACAAATTA-AAAGAAATGATTATCTAAAAAGACAACAATCAGGATGACATATATAAAGTACCACAATTAAAA----AGTCACGAAAATAATATCAGCACCAATAGCTTGAAAGTAATAACATTTGAAATTAAGATATGTACAATAGCGGAATAGAATTTTGACATGGTTGCCCTTCCGT
gi|6 : AAATATACGCCAAAA-CGCACCAGAGTTATTATAA--ACACACAAA-CAA----TCC---C------GAGAGG---------------GAG-GTGCCCCTGGAACACC-CT--A-GCTTCGGCCTGCACA-TA-AC-TT-TTTAGG--CTAGCTACGCACCTGAATTGGTGATACATGTCTTCTTTTCGAGACTTATTTCTTAAA-AAAT-TAATATTGCATTAACACAAATAAAGGCATTCCATGCACTTTATTATTCCTCCATTAAACACAATTGAATAACTAAATTGTAGTTCATGGTTGATATTTCATATTTCCCATCTCCGATTTTCCCCTAAAGAA-CCTCTTAGAATA-------------at
gi|7 : AAATAAACGTCAAAA-TGCACCACAGCCATTCAAC--ACAtcc
gi|7 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgaATTAA-TATACGTTAAA--TGCACCACAGCCATTATAC--ACACAAAAA-AGC----TCC---C------CC--------------------------CCTCCGGA-CACCACT--A-GTTTGGGCCTGCACA-TA-AT-GT-TT-AGG--CTAGCTACACCCCTGgcgacatgcaaaaattaatatacgttaaatgcaccacagccattatacacacaaaaaagctccccccctccggacaccactagtttgggcctgcacataatgtttaggctagctacacccctg
gi|8 : tagtgtagctacttaatatgcccaaggtccagggcctacacattattttcagaggcagtttttataacaattttccatttttgtataggttcaaaatgtatttaattgatgtgttgaatggctgtggtgcattttgacgtttatttgcgacatgcaaaaGTCTCAAATATACGTCAAAAATGCACCAGAGCCATTCTA------CACACA-ACACTTTTTC---A------GGGGGGTGGGGGGGGGGTGGGGGG-GTGCCCCCGGA-CCTC-CT--GTATTTGGGCCTGTACA-TA-AC-AT-TT-AGG--CTAGCTACGCCCCTG
gi|9 : agtagcatagctaccttataagcctaacgtcccaggtctgcacataattttgagaggtaagtttttacaaaaattaaaaaataaattaggttcaaaatgtatttaattatGTCTCAAATATACGCCAAAG-TGCACCAGAACCATTCT----ACACACAAA-ATA----TTT---C-------CGAGG---------------GGG---------------CCA-T--G-GTT---ACATGCACG-TA-AC-TT-TT-AGG--CTAGg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACGTCGCTCGAGTAATTATTGATTCTGCTTCAAAGAGTAAATTTGTATTCTGCATAATTAATTCATGGAAGTATATTAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATTTTTGGACGCCCCAATACCAAATATTTCGTTACGCCCCTGCATTT
Unaligned ( gi|16 ): AAATAGGCACAAAGGCGCGGTCCTGCACATAATTTTCAGAGACACTTTGTTTAGTTTAGTGTGTTGAACCTATTCAAAAACTAAAAAATAAATTAGGTTCAAAATATGTTTAATTATGTCTCAAATATACGGCA
Unaligned ( gi|18 ): GTAGCATAGCTACCCAATAGGCCCAAGGGCCCAGGCT