lowQualScore : 11111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 11 2 2 4444 00000000000000000000 222 1 111 1111 22 1111111 1 33 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 11111 1111 222222222222 1 1 3333333333 22 111 1 22 222 11 1 1 2 11 111 11 1 11111 33333333333333 1 8888888888888888888888888888888888888888 1 1 33333
lowQualScore : 88 0 0 3 2222 2 88888888888888888888 222 5 6 5 1 1 777 2222 5 5 1 88 8888888 8 5 888 4 00 6 7 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6666666 8 555 22222 5 77 2222 999999999999 66 55 3 3 0 666666 33 5 5 0 0 66 7 77 1111111111 77 3 2 3 3 3 33 333 3 55 5 3 22 6 111 11 5 3 0 0 0 2 5 0 33 777 22 88 5 8 55555 6 2 3 00000000000000 7 1 0 0 5 6 8 8 0 4 5 2 9999999999999999999999999999999999999999 7 6 0 1 1 0 66 3 22222 0 8 2 3
lowQualScore : .. . . . .... . .................... ... . . . . . ... .... . . . .. ....... . . ... . .. . . . .......................................................................................... ....... . ... ..... . .. .... ............ .. .. . . . ...... .. . . . . .. . .. .......... .. . . . . . .. ... . .. . . .. . ... .. . . . . . . . . .. ... .. .. . . ..... . . . .............. . . . . . . . . . . . . ........................................ . . . . . . .. . ..... . . . .
lowQualScore : 00 0 0 0 5555 5 55555555555555555555 333 0 8 7 7 7 111 1111 7 1 7 22 9999999 4 0 888 4 77 0 0 4 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222 8 111 55555 0 99 1111 333333333333 11 66 6 9 1 666666 22 0 0 1 2 99 3 99 0000000000 99 2 5 2 0 7 00 555 3 00 0 2 22 6 000 00 0 0 8 6 0 5 0 0 22 555 88 22 0 3 33333 0 5 2 88888888888888 8 8 8 8 0 0 0 0 8 6 6 8 2222222222222222222222222222222222222222 0 0 8 4 4 0 88 5 88888 6 0 8 0
consensus : NTTTTTGTTGTTGTTTATTTATTNTACTGTTCGGTGCTTCAAATGGACAGTTTTTTCNCGTTTCAGACTCCATAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATG----AGGGGTCGAGGAGGAACG-TCCCCTCATACAGCTTACAATAAGTGCACATATAAAAGAGAAATAGTA----ATGATTGAAATTGTATATGTTCTCACTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTG-GTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATA--AC------------TGAA-AA-A-------------GA-G-G----------GGG---------G------------G----------ATAAG-------GGAGGGGGTT-C-TCT-----G-GC--TTG----AAGCTTTTGTT------------TTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAA-CTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTTT------CA--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATGTAATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTA-CTTATATTCTTATCATACATTCCAAAAATAAATGA-TTTTGTTCTAATGGAAATGGGATATTTTTTATG--GACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTNTTCACATTCCCACAATAAA-TGAT---AGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTTTC-AGTAGTTTTATCTTATGTAGAAAATTGTTTGTTNCCAGTATAT-TATGATTGATCCGTGATTGAAACCACTGTGATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTTGTCAAAATTAT-T-TT-T--------ATGT-TT-T--------A-----TTTTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATAT-CTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATA-GGGTTAGGTATGATCGGACTT
Reference ( gi|2 ) : TTTTTTGTTGTTGTTT-TTT-TTTT----TTTGGTGTTT-----------TTTT---GCGTTTCAGACTCCAAAGTGGATTCTCATTT-ATTTTCCCCGTCTCATGCTTTATG----AGGGGTCAAGGAGGAACA-TCCCCTTATACAGCTTACACTAAGTGCACATATAAAAGAGAAATAGTA----ATTATTGAAATTGTATATATTCTGACTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTG-GTAGTTTTACCTAGTAAATATTATATTGCAATTACAATCCTTTATACAATAATGTATCTGGGAGATA--TC------------TGAA-AA-A-------------GA--------------GGG---------G------------A----------ATAAG-------GGAGGGGGGT-C-TCT-----G-GC--TTG----AAGCTTTTGTT------------TTC-AAACATGCACATACATCAAACGTGTCTTTATATACAAAA-CTAAGTAAGTAT-GTAATGAAACAATTCCCA--AGTTTTCGAAAACA--TATTGTATTTGTTTT------CT--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATGTAATATTTTGTCTCTGTCTGAATGAGCTGGATTATTTTA-TATATATTCTCATCATACATTCCAAACATAAATGATTTTTGTTCTTATGGAAATGGGATATATTTTATG--GACATCCAGTCTTGCAAAATATGTAGTATTTTTTGTGT-TTCTTTACATTCACACAAT-AA-TGAT---AGATTGTCTCGGTGGTATATGAGCAAAATGAACACAGTGGACTATCCAGTCGTTTTATCTTATGTAGAAAATCGTTTGTTGCCAGTATAT-TATGATTGATCCGTGACTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAAGATAGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAACT-----------------ATGT-------------------TTTTCCACTTGGAATTTCATTGCTATGATTCAATATAAGATACATAT-CTTGAATACCTTTTTTTCTTTTTCATGTATATTTTGATA-GGGTTAGGTATGACCGAACTT
gi|11 : TTTTTATT--TATTTATTTATTTT----TTTGGTGTTT-----------TTTTTTCG-GTTTCAGATTCCAAAGACGAGTCCCGCTT-ATTCTCCCCGTCTTATGCTGTATG----AGGGGTCGATGAGGAACA-TCCCCTCATACAGCTTACAATAAGTGCACATATAAAAGAGAAATAGTA----TTGATTGAAATTGTATTTGTTCTCACTTTCATTCAATATT---TACATACTGCTTTCATGCACTGATTAAACTG-GTAATTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACA
gi|15 : GTTGTTGTTT-TTT-TTGTACTGTTCTGTGCTTCAAATGGACAGTTTT---CTATTTTAGACTCCATA-TGGAGTCCCACTT-ATTCTCCACATCTCATTCTGTATG----AATGATAGAAGAGAAACA-TCCCC-CATACAACATACA--------ATGTATAAAAGAGGAATAtcaaaagtgtc
gi|17 : CGTTCCATACTCTAT-GTGGAGTC--ATTTCATTTCCCCCGTCTCATGCTGCATT----AAAGATCAAGGAGTAACA-TCCCCTCATACAGCTTACAa
gi|4 : tTCTCATTT-ATTCTCCCCGTCTCATGCTGTATG----AGGGATCAATGAGAAACG-TCACCTCATATAGCTTACAgacaatttaaacatatatgaggaat
gi|20 : gCTTATTT-ATTCCCTTCGTC----G---TATG----AAATGTCAAGGA-GAACGTTCTCTTTATACAACTTTCAacgtctcaatattttcgttcaatattacacacacatcgctttcatgcgctgattaaactagtaattaaacctaataaatattatattgtagttattatcctttatactgtaaaatatctgggagaaaacagaaaaaagggaagaaaaagaaaataagagagtgggttctctggcttgaagcttttgttcttcttttgatttttaaatatgcatgttcattagaaacaaaaactaagtaagtatgtcatataagaattcccatgttttcaaaagtatattgtatttgtttttaagtaaaagatatttcttcgtacgtcgaagttgaagtctgagctggagtgtatttttcgagcatctagtatatataactgtatgcctctaactggatgaacttgattattttactaatatttttatcatatattccaaaattaaatgaggttacatctaacgaaaatgggatgcttttgatggacatccagtcttgcaaaatgtgtagtatgtgtgttgttcacattcccacaataaatgatagatcgtttgtagttaagctaaatgagtacagttgact
gi|18 : TTT-ATTTTCCCCGTCATATG----GTGGGACAGGGGTCAGGGAAGACCA-TCCACTGTCACACCTTACAT--------CATATACAATA---ATAG-A----CTTAT-------ATATATATTCaa
gi|19 : g-ATTCTCCCCGTCTCATGCTGTATG----AGGAGTTGAGGAGGAACA-CCCTCTCATGCACCTTACAATAAGTGCACATATAAGAGAGAAATa
gi|3 : AAGTGCACATATAATAGAGAAATAGTA----ATGACTGAAATTGTATATGTTCTCACTTTCATTCAATATT---CACACACTGCTTTCATGCACTGTTTAAACTG-GTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGA-A---C------------TGAA-AA-A-------------GGAGGGTGGG------GGG---------G------------C----------GTAAG-------GGATGGGGTT-T-TCT-----G-GC--TTG----AAGCTTTTGTT------------TTT-AAACATGCACGTACATCAAAAGTGTCTTTATACA----A-CTATGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--AATTGTATTTGTTTT------CA--GTGATAT--ATATTTCTTTGTATATTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAACAGTATATGTAATATTTTGTCTCTAACTGAATGAGCTGGATGATTTTA-CTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTTATGGAAATGGGATATTTTTTATT--GACATCCAGTCTT-CAATTTGTGTAGTATTTTTTGTGC-TTCTTTACATTCCCACAATAAA-TGAT---AGATTGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTATCCAGTAGTTTTATCTTATGTAAAAAATTATTTGTTGCCAGTATAT-TATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATTTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAGTTGTTTTTGTCAAAATTATATGTTTTATTCCATGATGT-------------------TTTTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATAC----ATA-----TTCTCTTTTTCATGTATATTTTGATA-TGGTTAGGTATGATCGGACTT
gi|7 : AAGTGCACATATAAAAGAGAAATAGTA----ATGATTGAAATTGTCTATGTTCTCGCTTTCATTCAATATT---CAAACATTGCTTTCCTGCACTGTTTAAACGG-GTAGTTAAACCTAATAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAAATTAATGATAGTGAATGGA-AA-ACCACGGGGGTGGGGA--------------TGG---------G------------G----------GTAAG-------GGAGGTGGGTTC-TCT-----G-GC--TTA----AAGCTTTTGTT------------TTC-AAACATGCGCGTACATCAAAAGTGTCTTTATGTACAAAA-CTTAGT------------------------A--AGTTTTAAAAACCA--TATTGCATTTGTTTT------CA--GTGATAG--ATATTTCTTTGTATGTTTTATGTAAAAGTTTAAGTCTGATCTGGAGTGTTTTAAAATGCAAATTATTTTTCGAGCATCTACAATAGTATATGTAATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTA-CTTATATTCTTATCAtgaagcttattacatgtatttgcttttattatttttttcatttttttaaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtagtctat
gi|12 : AGTGCACATATAAAAGAGAAATAGTA----ATGATTGAAATTGTATATGTTCTCACTTTCATTCAATATT---CACAAATTGCTTCCATGCACTGTTAAAACTG-GTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATGTGGGAGATA--AC------------TGAAGAA-A-------------AG--------------GGG---------G------------G----------ATAAG-------GGAGGGGGTT-C-TCT-----G-AC--TTG----AAGCTTTT-TT------------TTC-AAACATGCACGTACATCAAAAGTGTCTTTATATATAAAA-CTAACTAAGTAT-GCCATGAAACAATTCACA--Aaa
gi|14 : AGTGCACATATAAAAGAGAAATAATATTCTATGATTGAAATTGTATAGGTTCTCACTTTCATTCAATAAT---GACACACTGCTTTCATGCACCGTTTGAACTG-ATAATTATACC------------TATTGTAATTATTATCCTTTATACAAAAATGTATCTGGGAGATA--AC------------TGAA-AA-A-------------AA--------------GGG---------GGGAGGTGGACAAA----------ATAAG-------GGAGGGGGTT-A-TCT-----G-
gi|1 : GTGCACATATAAAAGAGAAATAGTA----ACGATTGAAATTGTATATGTTCTCACTTTCATTCAATATT---CACACATTGCTTTCATGTACTGTTTAAACTG-GTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACGATAATGTATCTGGGAGATA--AC------------TGAA-AT-A-------------GGTGGGGGGGGGGGGGGGG---------GT-----------G----------ATAGG-------GGAGGGGGTT-C-TCT-----G-GC--TTG----AAGCTTTTGTT------------TTC-AAACATGCATGTACACCAAAAGTGTCTTTATATA-----------------T-GTCATGAAACAATTCCCA--AGTTTTCAAAAATA--TATTGTATTTGTTTT------CA--GTGATAG--TTATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATAAGTTTT-GTGCATCTACAATAGTATATGTAATATTTTGTCTCTAACTGAATGAGCTAGATTATTTTA-TTTATATTCTTATCATACATT--AAAAAAAAAAGG-TCTTGTTCTTATCGAAATAGGATAT-TTTTATG--GACATCCGGTCTTGCAAAATGTGTAATATTT
gi|10 : ATACAAACTGAAAATTGTA-----TGATTGAAATTGTATGT--TCTCACTTTCATTCAATATT---CACAC-TTGCTTTCATGCACTGTTAAAACTG-GTAGTTAAACCTAGTATATATTATATTGTAATTATTATCCTTTATACAATAATGTTTCTGGGTGATA--AC------------TGAA-AA-AAGGG---------GAGGTG----------GGG---------G------------A----------ATAAGGGATAAAGGAGGGGGTT-C-CCT-----G-GC--TTG----AAGCTTTTGTT------------TTA-AAACATGCACGTTCATCAAAAGTGTC-TTATATACAAAA-CTAAGTAAGTAC-GTCATGAAACAATTTCCA--AG---------ATA--TA-TATATTTGATTGAAACCACT--GTGAT-G--TTGTATCTTTGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttgtatcttttgttatcaaatatggccatgaaaacactgttttccgaattgcttcgttaaaattatatgttttattccatgatgtttttttccaccagaaatatcattgttatgattaaatataaaatatatatctagtataccttttttcttgttctcgtatattatgacagggttaggtataatcggactttgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|4 : ATTTTCGTTCAATATTACACACACATCGCTTTCATGCGCTGATTAAACTA-GTAATTAAACCTAATAAATATTATATTGTAGTTATTATCCTTTATACTGTAAAATATCTGGGAGAAA--AC------------AGAA-AA-A--------------A--------------GGG---------A------------AGAAAAAGAAAATAAG-------AGAGTGGGTT-C-TCT-----G-GC--TTG----AAGCTTTTGTTCTTCTTTTGATTTTT-AAATATGCATGT---TCA---------TTAGAAACAAAAACTAAGTAAGTAT-GTCATATAAGAATTCCCA--TGTTTTCAAAAGTA--TATTGTATTTGTTTT-------TAAGTAAAAG--ATATTTCTTCGTACGTC-------GAAGTTGAAGTCTGAGCTGGAGTGT---------------ATTTTTCGAGCATCTA-----GTATATATAACTGTATGCCTCTAACTGGATGAACTTGATTATTTTACTA-ATATTTTTATCATATATTCCAAAATTAAATGAGGTTACATCTAACGAAAATGGGATGCTTTTGATG--GACATCCAGTCTTGCAAAATGTGTAGTA-----TGTGTGTTGTTCACATTCCCACAATAAA-TGAT---AGATCGTTT--GTAGT---TAAGCTAAATGAGTACAGTTGACT
gi|8 : gtctcatttattctccccgtctcatgctgtatgagggatcaatgagaaacgtcacctcatatagcttacaacgtctcaatGTTCTCTTGCACAGTTTAAACTACATAA----ACCTATT---TTTTATACTATAACAAATATCTTCTTTACAACATTCGACATAGGAAATA--AC------------CGAA-AATC-------------GA--------------GGATATACTCGTA------------A----------ATA-G-------GGAGGATTGT-CCTCTTACATGTGCCCTTGTTCTAA--TTTTGTT------------TTTTAAACATGTA-ATTTAT--AATTT-TCTTTATAC-CA----TTAAGTA--TATCGTCA----ACCATTTCCATTA-TTTTCAAGAACACGTATT--ATTCGTTTT------CA--GT-ACAGTAATATTTCG--GTATGTTTT-TATAAAATTT------TGAGCTGCAGGGTTT-AAAACGTTCATT--TTTTTGAGCATCTACAATAATATAT
gi|13 : attgcaaatatataaaaggatttacagtattataatggctataaccattatatggtctcacttcaaagggctaaaaaaaACATCAAAAGTGTCTTTATATACAAAA-CTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTTT------CA--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTTGAGCATCTACAATAGTATATGTAATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTA-CTTATATTTTTATCATACATaattatagtacatgcagtttctaattggatga
gi|6 : TA-TATATATATTCGTCATATATTCAAAAGATG--TG--TTTTGTTGTAATGGAAATGGGATA-A-TTTATGTTGACATTCAGACTTCTCAAATATGTAATATTGTTTGTGT-TTGTTCACATTCCCATTAT-AA---ATACAAGATCGCCTCAGTGGAAGATGAGCAGAAAAAACCCGGT--ACTTTT---TTTTTTTATCTTTTACAGAAAATTGATTGTTCCCAAT-------------------------AACTACTGCCGTATTGTTTCTTTTGTTATTAAATATGAACACGCAAAGCCATGGTTGCCAAATTG-CTTTATC-AAACTG----------------ATGTTTTATTCCATTATA-----TTTTCCGCTAGAAATTTCATTGTCA-GTTTCAAAATAATATA
gi|5 : tatataTTTGTTCTAATGGAAATGGGATATTTTTTATG--GACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAAT-AAATGAT---AGATTGTTTCGGTGATAGATGAGCAAAATGAACACAGTGGACTTTCGAGTAGTTTTATCTTATGTAGAACAGTGTTTGTTGCCAGTATAT-TATGACTGATCTGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATGG-CTTTGTCAAAATTATGTTTTATTCCATG--ATGT-------------------TTTTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATAT-CTTGAATAGC-TTTTTTCCTTTTCAGGTATATTTTGATA-GGGTTAGGTAAAATCGGACTTttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatttcatgtatatttaaaaatgggttggttatgacagaactttgcagtatattattttctttaattactgcttctatttattaaaacaggtatagtgacttaatgaccgtgattatactggtggt
gi|10 : TTTCCAAGATATATAT-ATT------TGATTGAAACCACTGTGATGTTGTATCTTTtgaagcttattatttgcttttattatttttttctttttttttttaaattttgaattgcagtgatgatactgtggtattgtagaaagtttatattaatactgtatatagtttttaattcttgaagagaatataaat
gi|9 : atacaaactgaaaattgtatgattgaaattgtatgttctcactttcattcaatattcacacttgctttcatgcactgttaaaactggtagttaaacctagtatatattatattgtaattattatcctttatacaataatgtttctgggtgataactgaaaaaaggggaggtgggggaataagggataaaggagggggttccctggcttgaagcttttgttttaaaacatgcacgttcatcaaaagtgtcttatatacaaaactaagtaagtacgtcatgaaacaaTGATTGAAACCACTGTGATGTTGTATCTTT-GT-ATCAAATATGGCCATG-AAAACACTGTTTT----ATTC-C---------ATG-----------------ATGT-------------------ATTTCCACTAAGAGTTTCATTGTTATGATTCAAAATAAAATACATAT-CTTGAATACC-TTTTTTCTTGTTCATGTGTATTTTGATA-GGGTTAGGTATGATCGGACTTgtat
gi|1 : ttccaagatatatatattATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCGAATTG-CTTCGTTAAAATT-----------------ATATGTTTTATTCCATGATGTTTTTTTCCACCAGAAATATCATTGTTATGATTAAATATAAAATATATAT-CTAGTATACCTT-TTTTCTTGTTCTCGTATATTATGACA-GGGTTAGGTATAATCGGACTTtgaagcttatttgcttttcttattttttttatttttatttttttagttgcagtaataatactgtgctattgtagatagtttataataatactgtatatagttttcaattcttgaagagaatataaatgtccgtcatctttgttgtgtatgtcaaatgtattcccttttc
gi|6 : gtgcacatataaaagagaaatagtaacgattgaaattgtatatgttctcactttcattcaatattcacacattgctttcatgtactgtttaaactggtagttaaacctagtaaatattatattgtaattactatcctttatacgataatgtatctgggagataactgaaataggtgggggggggggggggggtgataggggagggggttctctggcttgaagcttttgttttcaaacatgcatgtacaccaaaagtgtctttatatatgtcatgaaacaattcccaagttttcaaaaatatattgtatttgttttcagtgatagttatttctttgtatgttttatataaaagttgaagtctgagctggagtgttttaaaatttaaataagttttgtgcatctacaatagtatatgtaatattttgtctctaactgaatgagctagattattttatttatattcttatcatacattaaaaaaaaaaggtcttgttcttatcgaaataggatatttttatggacatccggtcttgcaaaatgtgtaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTCATGTATATTTAAAAATGGGTTGGTTATGACAGAACTTtgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GTTGTTGTTCTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 2 4444444444 99999999999999 222 22222 22222222222222 0000000000000000000000000000000000000000000000000000000000 11111 1111 222222222222 1111 1111 11 1 1 11 11111111111111111111111111111111111111
lowQualScore : 3 0000000000 0 33333333333333 666 999 6 5 0 77 0 5 3 555 00000 4 777 777 0 66666666666666 4 4444444444444444444444444444444444444444444444444444444444 4 4 11111 4 66 0000 555555555555 5 0 5 1 4 66 0 66 0000 5 66 66 1 0 1 1 1 1 77 2222 0 99 6 4 6 2 8 1 0 0 6 33 3 1 0 8 5 99999 4 6 6 00000000000000000000000000000000000000 0 1 1 8 0
lowQualScore : . .......... . .............. ... ... . . . .. . . . ... ..... . ... ... . .............. . .......................................................... . . ..... . .. .... ............ . . . . . .. . .. .... . .. .. . . . . . . .. .... . .. . . . . . . . . . .. . . . . . ..... . . . ...................................... . . . . .
lowQualScore : 7 7777777777 7 77777777777777 444 888 4 0 4 00 2 0 6 888 66666 4 000 000 7 11111111111111 4 3333333333333333333333333333333333333333333333333333333333 4 4 11111 4 99 6666 666666666666 0 2 7 8 4 11 1 99 6666 0 99 99 4 7 4 3 7 7 99 1111 8 88 7 0 0 5 0 0 8 4 0 22 5 0 8 0 0 44444 6 7 7 33333333333333333333333333333333333333 8 0 0 0 6
consensus : NTTTTTGTTGTTGTTT-TTT-TT-TA-CT-TTCGGTGCTT-----------TTTTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGT-TCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTATCC-AGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATAT-TATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTAT----TTTAT--------GTTNTA-----------TTTTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
Reference ( family-1375 ) : NTTTTTGTTGTTGTTTATTTATTNTA-CTGTTCGGTGCTTCAAATGGACAGTTTTTTCNCGTTTCAGACTCCATAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACG-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGA-TTTTGT-TCTAATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTNTTCACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACT-TTC-AGTAGTTTTATCTTATGTAGAAAATTGTTTGTTNCCAGTATAT-TATGATTGATCCGTGATTGAAACCACTGTGATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTTGTCAAAATTAT---TTTTAT--------GTTTTA-----------TTTTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
gi|1 : -GTGCACATATAAAAGAGAA---ATAGTA-----ACGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGTACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACGATAATGTATCTGGGAGATAACT--------------GAAAT-A----GGTGGGGGGGGGGGGGG--------G--------------GGT---------G-ATAGGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCATGTACACCAAAAGTGTCTTTATATA----------------T-GTCATGAAACAATTCCCA--AGTTTTCAAAAATA--TATTGTATTTGTTT----TC-A--GTGATAG--TTATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATAAGTTTT-GTGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTAGATTATTTTATTTATATTCTTATCATACATT--AAAAAAAAAAGG-TCTTGT-TCTTATCGAAATAGGATA-TTTTTATGGACATCCGGTCTTGCAAAATGTGTAATATTT
gi|1 : ATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCGAATTG-CTTCGTTAAAATTATATGTTTTATTCCATGATGTTTT-------------TTTCCACCAGAAATATCATTGTTATGATTAAATATAAAATATATATCTAGTATACC-TTTTTTCTTGTTCTCGTATATTATGACAGGGTTAGGTATAATCGGACTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttgtatcttttgttatcaaatatggccatgaaaacactgttttccgaattgcttcgttaaaattatatgttttattccatgatgtttttttccaccagaaatatcattgttatgattaaatataaaatatatatctagtataccttttttcttgttctcgtatattatgacagggttaggtataatcggactttgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|10 : gtgcacatataaaagagaaatagtaacgattgaaattgtatatgttctcactttcattcaatattcacacattgctttcatgtactgtttaaactggtagttaaacctagtaaatattatattgtaattactatcctttatacgataatgtatctgggagataactgaaataggtgggggggggggggggggtgataggggagggggttctctggcttgaagcttttgttttcaaacatgcatgtacaccaaaagtgtctttatatatgtcatgaaacaattcccaagttttcaaaaatatattgtatttgttttcagtgatagttatttctttgtatgttttatataaaagttgaagtctgagctggagtgttttaaaatttaaataagttttgtgcatctacaatagtatatgtaatattttgtctctaactgaatgagctagattattttatttatattcttatcatacattaaaaaaaaaaggtcttgttcttatcgaaataggatatttttatggacatccggtcttgcaaaatgtgtaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACAAACTGAAA---ATTGTA------TGATTGAAATTGT-AT--GTTCTCA---CTTTCATTCAATATT---CACAC-TTGCTTTCATGCACTGTTAAAACTGGTAGTTAAACCTAGTATATATTATATTGTAATTATTATCCTTTATACAATAATGTTTCTGGGTGATAACT--------------GAAAA-A-----A------------GGG--------GAGGTGGGGGAATAAGG----------G-ATAAAGGAGG-GG-GTTCCCT-----G-GC--TTG----AAGCTTTTG------------TTTTA-AAACATGCACGTTCATCAAAAGTGTC-TTATATACAAAACTAAGTAAGTAC-GTCATGAAACAATTTCCA--AG---------ATA--TA-TATATTTGATTGAAACC-ACTGTGAT-G--TTGTATCTTTGTATtgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|11 : TTTTTATTTATTTATT-TATTTTTTTGGTGTTT-----------TTTTTTCG-GTTTCAGATTCCAAAGACGAGTCCCGCTT-ATTCTCCCCGTCTTATGCTGTATGAGGGGTCGATGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----TTGATTGAAATTGT-ATTTGTTCTCA---CTTTCATTCAATATT---TACATACTGCTTTCATGCACTGATTAAACTGGTAATTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACA
gi|12 : A-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACAAATTGCTTCCATGCACTGTTAAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATGTGGGAGATAACT--------------GAAGA-A-----A------------AGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-AC--TTG----AAGCTTTT-------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATATAAAACTAACTAAGTAT-GCCATGAAACAATTCACA--Atcaaaagtgtc
gi|13 : ACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTTGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTTTTATCATACAT
gi|14 : A-GTGCACATATAAAAGAGAA---ATAATATTCT-ATGATTGAAATTGT-ATAGGTTCTCA---CTTTCATTCAATAAT---GACACACTGCTTTCATGCACCGTTTGAACTGATAATTATACCTA------------TTGTAATTATTATCCTTTATACAAAAATGTATCTGGGAGATAACT--------------GAAAA-A----AA------------GGG--------G--------------GGAGGTGGACAAA-ATAAGGGAGG-GG-GTTATCT-----G-
gi|15 : GTTGTTGTTT-TTT-TTGTA-CTGTTCTGTGCTTCAAATGGACAGTTTTCT---ATTTTAGACTCCATA-TGGAGTCCCACTT-ATTCTCCACATCTCATTCTGTATGAATGATAGAAGAGAAACA-TCCCC-CATACAACATACA-AT---------GTATAAAAGAGGA---ATA
gi|17 : CGTTCCATACTCTAT-GTGGAGTC--ATTTCATTTCCCCCGTCTCATGCTGCATTAAAGATCAAGGAGTAACA-TCCCCTCATACAGCTTACAGACAATTTAAACATAT--ATGAGGA---ATa
gi|18 : tTTT-ATTTTCCCCGTCATATGGTGGGACAGGGGTCAGGGAAGACCA-TCCACTGTCACACCTTACA-TCA---TATACA-ATAATAGA
gi|19 : g-ATTCTCCCCGTCTCATGCTGTATGAGGAGTTGAGGAGGAACA-CCCTCTCATGCACCTTACA-ATAA-GTGCACATATAAGAGAGAA---ATcttatatatatattca
gi|2 : TTTTTGTTGTTGTTT-TTT-TTTT-----TTTGGTG--------------TTTTTTTGCGTTTCAGACTCCAAAGTGGATTCTCATTT-ATTTTCCCCGTCTCATGCTTTATGAGGGGTCAAGGAGGAACA-TCCCCTTATACAGCTTACA-CTAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATTATTGAAATTGT-ATATATTCTGA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTTTACCTAGTAAATATTATATTGCAATTACAATCCTTTATACAATAATGTATCTGGGAGATATCT--------------GAAAA-A----GA------------GGG--------G--------------A-------------ATAAGGGAGG-GG-GGTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACATACATCAAACGTGTCTTTATATACAAAACTAAGTAAGTAT-GTAATGAAACAATTCCCA--AGTTTTCGAAAACA--TATTGTATTTGTTT----TC-T--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTGTCTGAATGAGCTGGATTATTTTATATATATTCTCATCATACATTCCAAACATAAATGATTTTTGT-TCTTATGGAAATGGGATATATTTTATGGACATCCAGTCTTGCAAAATATGTAGTATTTTTTGTGT-TTCTTTACATTCACACAAT-AATGATAGATTGTCTCGGTGGTATATGAGCAAAATGAACACAGTGGACTATCC-AGTCGTTTTATCTTATGTAGAAAATCGTTTGTTGCCAGTATAT-TATGATTGATCCGTGACTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAAGATAGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAA---------CTAT--------GT---------------TTTTCCACTTGGAATTTCATTGCTATGATTCAATATAAGATACATATCTTGAATACCTTTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGACCGAACTT
gi|20 : tATTT-ATTCCCTTCGTC-------GTATGAAATGTCAAGGA-GAACGTTCTCTTTATACAACTTTCA-A
gi|3 : cttAA-GTGCACATATAATAGAGAA---ATAGTA-----ATGACTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACACTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGA--ACT--------------GAAAA-A----GGAGGGT-------GGG--------G--------------GG----------GCGTAAGGGATG-GG-GTTTTCT-----G-GC--TTG----AAGCTTTTG------------TTTTT-AAACATGCACGTACATCAAAAGTGTCTTTATACA----ACTATGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--AATTGTATTTGTTT----TC-A--GTGATAT--ATATTTCTTTGTATATTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAACAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATGATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGT-TCTTATGGAAATGGGATATTTTTTATTGACATCCAGTCTT-CAATTTGTGTAGTATTTTTTGTGC-TTCTTTACATTCCCACAATAAATGATAGATTGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTATCC-AGTAGTTTTATCTTATGTAAAAAATTATTTGTTGCCAGTATAT-TATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATTTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAGTTGTTTTTGTCAAAATTA-------TAT--------GTTTTATTCCATGATGTTTTTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACAT-------ATACA-TATTCTCTTTTTCATGTATATTTTGATATGGTTAGGTATGATCGGACTTa
gi|4 : GTCTCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGATCAATGAGAAACG-TCACCTCATATAGCTTACA-Atgaagcttattacatgtatttgcttttattatttttttcatttttttaaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtagtctat
gi|4 : TCTCAATATTTTCGTTCAATATTACACACACATCGCTTTCATGCGCTGATTAAACTAGTAATTAAACCTAATAAATATTATATTGTAGTTATTATCCTTTATACTGTAAAATATCTGGGAGAAAACA--------------GAAAA-A-----A------------GGGAAGAAAAAG--------------AA----------A-ATAAGAGAGT-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTGTTCTTCTTTTGATTTTT-AAATATGCATGTTCATTAGAA--------ACA---AAAACTAAGTAAGTAT-GTCATATAAGAATTCCCA--TGTTTTCAAAAGTA--TATTGTATTTGTTT----TTAA--GTAAAAG--ATATTTCTTCGTACGTC-------GAAGTTGAAGTCTGAGCTGGAGTG---------------TATTTTTCGAGCATC-----TAGTATATA--TA----ACTGTATGCCTCTAACTGGATGAACTTGATTATTTTACTAATATTTTTATCATATATTCCAAAATTAAATGA-GGTTACATCTAACGAAAATGGGATGCTTTTGATGGACATCCAGTCTTGCAAAATGTGTAGTA-----TGTGTGTTGTTCACATTCCCACAATAAATGATAGATCGTTT-----GTAGTTAAGCTAAATGAGTACAGTTGACT-cgtctcaatattttcgttcaatattacacacacatcgctttcatgcgctgattaaactagtaattaaacctaataaatattatattgtagttattatcctttatactgtaaaatatctgggagaaaacagaaaaaagggaagaaaaagaaaataagagagtgggttctctggcttgaagcttttgttcttcttttgatttttaaatatgcatgttcattagaaacaaaaactaagtaagtatgtcatataagaattcccatgttttcaaaagtatattgtatttgtttttaagtaaaagatatttcttcgtacgtcgaagttgaagtctgagctggagtgtatttttcgagcatctagtatatataactgtatgcctctaactggatgaacttgattattttactaatatttttatcatatattccaaaattaaatgaggttacatctaacgaaaatgggatgcttttgatggacatccagtcttgcaaaatgtgtagtatgtgtgttgttcacattcccacaataaatgatagatcgtttgtagttaagctaaatgagtacagttgact
gi|5 : gtctcatttattctccccgtctcatgctgtatgagggatcaatgagaaacgtcacctcatatagcttacaacgTTTGT-TCTAATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATTGTTTCGGTGATAGATGAGCAAAATGAACACAGTGGACT-TTCGAGTAGTTTTATCTTATGTAGAACAGTGTTTGTTGCCAGTATAT-TATGACTGATCTGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATGG-CTTTGTCAAAATTAT---GTTT-T--------ATTCCATGATGT-----TTTTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATAGC-TTTTTTCCTTTTCAGGTATATTTTGATAGGGTTAGGTAAAATCGGACTT
gi|6 : TATATTC--GTCATATATTCAAAAGATG--TG--TTTTGT-TGTAATGGAAATGGGATAATTTATGTTGACATTCAGACTTCTCAAATATGTAATATTGTTTGTGT-TTGTTCACATTCCCATTATAAATACAAGATCGCCTCAGTGGAAGATGAGCAGAAAAAACCCGGT--ACT-TTT---TTTTTTTATCTTTTACAGAAAATTGATTGTTCCCAAT-------------------------AACTACTGCCGTATTGTTTCTTTTGTTATTAAATATGAACACGCAAAGCCATGGTTGCCAAATTG-CTTTATCAAACTGATG--TTTTATTCC-----ATTATA-----------TTTTCCGCTAGAAATTTCATTGTCA-GTTTCAAAATAATATAtgaagcttattatttgcttttattatttttttctttttttttttaaattttgaattgcagtgatgatactgtggtattgtagaaagtttatattaatactgtatatagtttttaattcttgaagagaatataaat
gi|7 : tatatatatataAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-CTATGTTCTCG---CTTTCATTCAATATT---CAAACATTGCTTTCCTGCACTGTTTAAACGGGTAGTTAAACCTAATAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAAATTAATGATAGTGAATGGAAA-ACCACGG------------GGGTGGGGAT-G--------------GG----------G-GTAAGGGAGGTGG-GTTCTCT-----G-GC--TTA----AAGCTTTTG------------TTTTC-AAACATGCGCGTACATCAAAAGTGTCTTTATGTACAAAACTTAGTAAGT--------------------------TTTAAAAACCA--TATTGCATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATGTAAAAGTTTAAGTCTGATCTGGAGTGTTTTAAAATGCAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatttcatgtatatttaaaaatgggttggttatgacagaactttgcagtatattattttctttaattactgcttctatttattaaaacaggtatagtgacttaatgaccgtgattatactggtggt
gi|8 : TGCAAATATATAAAAGGATTTACAGTATTATAATGGCTATAACCATTATATGGTCTCA---CTT-CA---AAGGGC---TAAAAAAAGTTCTCTTGCACAGTTTAAACTA-CA--TAAACCTATT---TTTTATACTATAACAAATATCTTCTTTACAACATTCGACATAGGAAATAACC--------------GAAAATC----GA------------GGATATACTC-G--------------TA----------A-ATA-GGGAGG-ATTGTCCTCTTACATGTGCCCTTGTTCTAA--TTTTG------------TTTTTTAAACATGTA---AT-TTATAATTTTCTTTATAC-CA---TTAAGTA--TATCGTCA----ACCATTTCCATTA-TTTTCAAGAACACGTATT--ATTCGTTT----TC-A--GT-ACAGTAATATTTC--GGTATGTTTT-TATAAAATTT------TGAGCTGCAG-GGTTTAAAACGTTCAT--TTTTTTGAGCATCTACAATAATATATAATTATAGTACATGCAGTTTCTAATTGGATGAaa
gi|9 : atTTCCAAGATATATAT-ATT------TGATTGAAACCACTGTGATGTTGTATCTTT-GT-ATCAAATATGGCCATG-AAAACACTGTTTT----ATTC-C---------------------AT--------GATGTA-----------TTT-CCACTAAGAGTTTCATTGTTATGATTCAAAATAAAATACATATCTTGAATACC-TTTTTTCTTGTTCATGTGTATTTTGATAGGGTTAGGTATGATCGGACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGTTGTTCTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 5555555555 11111 22222 22222222222222 0000000000000000000000000000000000000000000000000000000000 11111 1111 222222222222 1111 1111 11 7777777777777777777777777777777777777777777777
lowQualScore : 6 888888 0 0 2222222222 77777 666 6 5 0 5 0 5 3 555 00000 4 777 777 0 66666666666666 4 4444444444444444444444444444444444444444444444444444444444 4 4 11111 4 66 0000 555555555555 5 0 5 1 4 66 0 66 0000 5 66 66 1 0 1 1 1 1 77 2222 0 44 1 6 2 8 0 8 4 8 1 3 0 0 6 6 2 7777777777777777777777777777777777777777777777 0 1 1 8 0
lowQualScore : . ...... . . .......... ..... ... . . . . . . . ... ..... . ... ... . .............. . .......................................................... . . ..... . .. .... ............ . . . . . .. . .. .... . .. .. . . . . . . .. .... . .. . . . . . . . . . . . . . . . .............................................. . . . . .
lowQualScore : 7 333333 7 7 7777777777 88888 888 4 0 4 0 2 0 6 888 66666 4 000 000 7 11111111111111 4 3333333333333333333333333333333333333333333333333333333333 4 4 11111 4 99 6666 666666666666 0 2 7 8 4 11 1 99 6666 0 99 99 4 7 4 3 7 7 99 1111 8 22 0 0 5 0 8 8 0 8 0 2 8 2 7 7 2 8888888888888888888888888888888888888888888888 8 0 0 0 6
consensus : NTTTTTGTTGTTGTTTTTTTT-T-CT-TTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAAT--TAT-CTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
Reference ( family-1375 ) : NTTTTTGTTGTTGTTTTTTTT-TACT-TTCGGTGCTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTATCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAAT--TATTTTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
gi|1 : -GTGCACATATAAAAGAGAA---ATAGTA-----ACGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGTACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACGATAATGTATCTGGGAGATAACT--------------GAAAT-A----GGTGGGGGGGGGGGGGG--------G--------------GGT---------G-ATAGGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCATGTACACCAAAAGTGTCTTTATATA----------------T-GTCATGAAACAATTCCCA--AGTTTTCAAAAATA--TATTGTATTTGTTT----TC-A--GTGATAG--TTATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATAAGTTTT-GTGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTAGATTATTTTATTTATATTCTTATCATACATT--AAAAAAAAAAGG-TCTTGTTCTTATCGAAATAGGATA-TTTTTATGGACATCCGGTCTTGCAAAATGTGTAATATTT
gi|1 : ATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCGAATTG-CTTCGTTAAAAT--TAT---AT---GTTTTA-----------TTCCATGATGTTTTTTTCCACCAGAAATATCATTGTTATGATTAAATATAAAATATATATCTAGTATACC-TTTTTTCTTGTTCTCGTATATTATGACAGGGTTAGGTATAATCGGACTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttgtatcttttgttatcaaatatggccatgaaaacactgttttccgaattgcttcgttaaaattatatgttttattccatgatgtttttttccaccagaaatatcattgttatgattaaatataaaatatatatctagtataccttttttcttgttctcgtatattatgacagggttaggtataatcggactttgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|10 : gtgcacatataaaagagaaatagtaacgattgaaattgtatatgttctcactttcattcaatattcacacattgctttcatgtactgtttaaactggtagttaaacctagtaaatattatattgtaattactatcctttatacgataatgtatctgggagataactgaaataggtgggggggggggggggggtgataggggagggggttctctggcttgaagcttttgttttcaaacatgcatgtacaccaaaagtgtctttatatatgtcatgaaacaattcccaagttttcaaaaatatattgtatttgttttcagtgatagttatttctttgtatgttttatataaaagttgaagtctgagctggagtgttttaaaatttaaataagttttgtgcatctacaatagtatatgtaatattttgtctctaactgaatgagctagattattttatttatattcttatcatacattaaaaaaaaaaggtcttgttcttatcgaaataggatatttttatggacatccggtcttgcaaaatgtgtaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACAAACTGAAA---ATTGTA------TGATTGAAATTGT-AT--GTTCTCA---CTTTCATTCAATATT---CACAC-TTGCTTTCATGCACTGTTAAAACTGGTAGTTAAACCTAGTATATATTATATTGTAATTATTATCCTTTATACAATAATGTTTCTGGGTGATAACT--------------GAAAA-A-----A------------GGG--------GAGGTGGGGGAATAAGG----------G-ATAAAGGAGG-GG-GTTCCCT-----G-GC--TTG----AAGCTTTTG------------TTTTA-AAACATGCACGTTCATCAAAAGTGTC-TTATATACAAAACTAAGTAAGTAC-GTCATGAAACAATTTCCA--AG---------ATA--TA-TATATTTGATTGAAACC-ACTGTGAT-G--TTGTATCTTTGTATtgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|11 : TTTTTATT--TATTTATTTA-TTTT-TTTGGTGTTTT---T------TTTTCG-GTTTCAGATTCCAAAGACGAGTCCCGCTT-ATTCTCCCCGTCTTATGCTGTATGAGGGGTCGATGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----TTGATTGAAATTGT-ATTTGTTCTCA---CTTTCATTCAATATT---TACATACTGCTTTCATGCACTGATTAAACTGGTAATTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACA
gi|12 : A-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACAAATTGCTTCCATGCACTGTTAAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATGTGGGAGATAACT--------------GAAGA-A-----A------------AGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-AC--TTG----AAGCTTTT-------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATATAAAACTAACTAAGTAT-GCCATGAAACAATTCACA--Atcaaaagtgtc
gi|13 : ACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTTGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTTTTATCATACAT
gi|14 : A-GTGCACATATAAAAGAGAA---ATAATATTCT-ATGATTGAAATTGT-ATAGGTTCTCA---CTTTCATTCAATAAT---GACACACTGCTTTCATGCACCGTTTGAACTGATAATTATACCTA------------TTGTAATTATTATCCTTTATACAAAAATGTATCTGGGAGATAACT--------------GAAAA-A----AA------------GGG--------G--------------GGAGGTGGACAAA-ATAAGGGAGG-GG-GTTATCT-----G-
gi|15 : GTTGTTGTTTTTTTTGTACTGTTCTGTGCTTCAAATGGACAGTTTTC-TATTTTAGACTCCATA-TGGAGTCCCACTT-ATTCTCCACATCTCATTCTGTATGAATGATAGAAGAGAAACA-TCCCC-CATACAACATACA-AT---------GTATAAAAGAGGA---ATA
gi|17 : CGTTCCATACTCTAT-GTGGAGTC--ATTTCATTTCCCCCGTCTCATGCTGCATTAAAGATCAAGGAGTAACA-TCCCCTCATACAGCTTACAGACAATTTAAACATAT--ATGAGGA---ATa
gi|18 : tTTT-ATTTTCCCCGTCATATGGTGGGACAGGGGTCAGGGAAGACCA-TCCACTGTCACACCTTACA-TCA---TATACA-ATAATAGA
gi|19 : g-ATTCTCCCCGTCTCATGCTGTATGAGGAGTTGAGGAGGAACA-CCCTCTCATGCACCTTACA-ATAA-GTGCACATATAAGAGAGAA---ATcttatatatatattca
gi|2 : TTTTTGTTGTTGTTTTTTTT-T--T-TTTGGTGTTTT---T------TT---GCGTTTCAGACTCCAAAGTGGATTCTCATTT-ATTTTCCCCGTCTCATGCTTTATGAGGGGTCAAGGAGGAACA-TCCCCTTATACAGCTTACA-CTAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATTATTGAAATTGT-ATATATTCTGA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTTTACCTAGTAAATATTATATTGCAATTACAATCCTTTATACAATAATGTATCTGGGAGATATCT--------------GAAAA-A----GA------------GGG--------G--------------A-------------ATAAGGGAGG-GG-GGTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACATACATCAAACGTGTCTTTATATACAAAACTAAGTAAGTAT-GTAATGAAACAATTCCCA--AGTTTTCGAAAACA--TATTGTATTTGTTT----TC-T--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTGTCTGAATGAGCTGGATTATTTTATATATATTCTCATCATACATTCCAAACATAAATGATTTTTGTTCTTATGGAAATGGGATATATTTTATGGACATCCAGTCTTGCAAAATATGTAGTATTTTTTGTGT-TTCTTTACATTCACACAAT-AATGATAGATTGTCTCGGTGGTATATGAGCAAAATGAACACAGTGGACTATCCAGTCGTTTTATCTTATGTAGAAAATCGTTTGTTGCCAGTATATTATGATTGATCCGTGACTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAAGATAGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAA-------CTAT---GT---------------TT-------------TTCCACTTGGAATTTCATTGCTATGATTCAATATAAGATACATATCTTGAATACCTTTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGACCGAACTT
gi|20 : tATTT-ATTCCCTTCGTC-------GTATGAAATGTCAAGGA-GAACGTTCTCTTTATACAACTTTCA-A
gi|3 : cttAA-GTGCACATATAATAGAGAA---ATAGTA-----ATGACTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACACTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGA--ACT--------------GAAAA-A----GGAGGGT-------GGG--------G--------------GG----------GCGTAAGGGATG-GG-GTTTTCT-----G-GC--TTG----AAGCTTTTG------------TTTTT-AAACATGCACGTACATCAAAAGTGTCTTTATACA----ACTATGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--AATTGTATTTGTTT----TC-A--GTGATAT--ATATTTCTTTGTATATTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAACAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATGATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTTATGGAAATGGGATATTTTTTATTGACATCCAGTCTT-CAATTTGTGTAGTATTTTTTGTGC-TTCTTTACATTCCCACAATAAATGATAGATTGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTATCCAGTAGTTTTATCTTATGTAAAAAATTATTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATTTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAGTTGTTTTTGTCAAAAT--TA---TAT---GTTTTATTCCATGATGTTT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACAT-------ATACA-TATTCTCTTTTTCATGTATATTTTGATATGGTTAGGTATGATCGGACTTa
gi|4 : GTCTCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGATCAATGAGAAACG-TCACCTCATATAGCTTACA-Atgaagcttattacatgtatttgcttttattatttttttcatttttttaaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtagtctat
gi|4 : TCTCAATATTTTCGTTCAATATTACACACACATCGCTTTCATGCGCTGATTAAACTAGTAATTAAACCTAATAAATATTATATTGTAGTTATTATCCTTTATACTGTAAAATATCTGGGAGAAAACA--------------GAAAA-A-----A------------GGGAAGAAAAAG--------------AA----------A-ATAAGAGAGT-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTGTTCTTCTTTTGATTTTT-AAATATGCATGTTCATTAGAA--------ACA---AAAACTAAGTAAGTAT-GTCATATAAGAATTCCCA--TGTTTTCAAAAGTA--TATTGTATTTGTTT----TTAA--GTAAAAG--ATATTTCTTCGTACGTC-------GAAGTTGAAGTCTGAGCTGGAGTG---------------TATTTTTCGAGCATC-----TAGTATATA--TA----ACTGTATGCCTCTAACTGGATGAACTTGATTATTTTACTAATATTTTTATCATATATTCCAAAATTAAATGAGGTTACATCTAACGAAAATGGGATGCTTTTGATGGACATCCAGTCTTGCAAAATGTGTAGTA-----TGTGTGTTGTTCACATTCCCACAATAAATGATAGATCGTTT-----GTAGTTAAGCTAAATGAGTACAGTTGACTcgtctcaatattttcgttcaatattacacacacatcgctttcatgcgctgattaaactagtaattaaacctaataaatattatattgtagttattatcctttatactgtaaaatatctgggagaaaacagaaaaaagggaagaaaaagaaaataagagagtgggttctctggcttgaagcttttgttcttcttttgatttttaaatatgcatgttcattagaaacaaaaactaagtaagtatgtcatataagaattcccatgttttcaaaagtatattgtatttgtttttaagtaaaagatatttcttcgtacgtcgaagttgaagtctgagctggagtgtatttttcgagcatctagtatatataactgtatgcctctaactggatgaacttgattattttactaatatttttatcatatattccaaaattaaatgaggttacatctaacgaaaatgggatgcttttgatggacatccagtcttgcaaaatgtgtagtatgtgtgttgttcacattcccacaataaatgatagatcgtttgtagttaagctaaatgagtacagttgact
gi|5 : gtctcatttattctccccgtctcatgctgtatgagggatcaatgagaaacgtcacctcatatagcttacaacgTTTGTTCTAATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATTGTTTCGGTGATAGATGAGCAAAATGAACACAGTGGACTTTCGAGTAGTTTTATCTTATGTAGAACAGTGTTTGTTGCCAGTATATTATGACTGATCTGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATGG-CTTTGTCAAAAT--TATGTTTT---ATTCCATGATGT-----TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATAGC-TTTTTTCCTTTTCAGGTATATTTTGATAGGGTTAGGTAAAATCGGACTT
gi|6 : TATATTC--GTCATATATTCAAAAGATG--TG--TTTTGTTGTAATGGAAATGGGATAATTTATGTTGACATTCAGACTTCTCAAATATGTAATATTGTTTGTGT-TTGTTCACATTCCCATTATAAATACAAGATCGCCTCAGTGGAAGATGAGCAGAAAAAACCCGGT--ACTTTT---TTTTTTTATCTTTTACAGAAAATTGATTGTTCCCAAT------------------------AACTACTGCCGTATTGTTTCTTTTGTTATTAAATATGAACACGCAAAGCCATGGTTGCCAAATTG-CTTTATCAAACTGATGTTTTATTCCATTATA-----------TT-------------TTCCGCTAGAAATTTCATTGTCA-GTTTCAAAATAATATAtgaagcttattatttgcttttattatttttttctttttttttttaaattttgaattgcagtgatgatactgtggtattgtagaaagtttatattaatactgtatatagtttttaattcttgaagagaatataaat
gi|7 : tatatatatataAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-CTATGTTCTCG---CTTTCATTCAATATT---CAAACATTGCTTTCCTGCACTGTTTAAACGGGTAGTTAAACCTAATAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAAATTAATGATAGTGAATGGAAA-ACCACGG------------GGGTGGGGAT-G--------------GG----------G-GTAAGGGAGGTGG-GTTCTCT-----G-GC--TTA----AAGCTTTTG------------TTTTC-AAACATGCGCGTACATCAAAAGTGTCTTTATGTACAAAACTTAGTAAGT--------------------------TTTAAAAACCA--TATTGCATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATGTAAAAGTTTAAGTCTGATCTGGAGTGTTTTAAAATGCAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatttcatgtatatttaaaaatgggttggttatgacagaactttgcagtatattattttctttaattactgcttctatttattaaaacaggtatagtgacttaatgaccgtgattatactggtggt
gi|8 : TGCAAATATATAAAAGGATTTACAGTATTATAATGGCTATAACCATTATATGGTCTCA---CTT-CA---AAGGGC---TAAAAAAAGTTCTCTTGCACAGTTTAAACTA-CA--TAAACCTATT---TTTTATACTATAACAAATATCTTCTTTACAACATTCGACATAGGAAATAACC--------------GAAAATC----GA------------GGATATACTC-G--------------TA----------A-ATA-GGGAGG-ATTGTCCTCTTACATGTGCCCTTGTTCTAA--TTTTG------------TTTTTTAAACATGTA---AT-TTATAATTTTCTTTATAC-CA---TTAAGTA--TATCGTCA----ACCATTTCCATTA-TTTTCAAGAACACGTATT--ATTCGTTT----TC-A--GT-ACAGTAATATTTC--GGTATGTTTT-TATAAAATTT------TGAGCTGCAG-GGTTTAAAACGTTCAT--TTTTTTGAGCATCTACAATAATATATAATTATAGTACATGCAGTTTCTAATTGGATGAaa
gi|9 : atTGATTGAAACCACTGTGATGTTGTATCTTT-GT-ATCAAATATGGCCATG-AAAACACTGTTTT------------------------ATTCCAT---GATGTA-----------TT-------------T-CCACTAAGAGTTTCATTGTTATGATTCAAAATAAAATACATATCTTGAATACC-TTTTTTCTTGTTCATGTGTATTTTGATAGGGTTAGGTATGATCGGACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGTTGTTCTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 1 5555555555 11111 22222 22222222222222 0000000000000000000000000000000000000000000000000000000000 11111 1111 222222222222 1111 1111 11 8888888888888888888888888888888888888888888888888
lowQualScore : 6 77777777 2 2222222222 77777 666 6 5 0 5 0 5 3 555 00000 4 777 777 0 66666666666666 4 4444444444444444444444444444444444444444444444444444444444 4 4 11111 4 66 0000 555555555555 5 0 5 1 4 66 0 66 0000 5 66 66 1 0 1 1 1 1 77 2222 0 44 1 6 2 8 0 8 1 8 1 3 0 0 6 6 2 8888888888888888888888888888888888888888888888888 0 1 1 8 0
lowQualScore : . ........ . .......... ..... ... . . . . . . . ... ..... . ... ... . .............. . .......................................................... . . ..... . .. .... ............ . . . . . .. . .. .... . .. .. . . . . . . .. .... . .. . . . . . . . . . . . . . . . ................................................. . . . . .
lowQualScore : 7 00000000 0 7777777777 88888 888 4 0 4 0 2 0 6 888 66666 4 000 000 7 11111111111111 4 3333333333333333333333333333333333333333333333333333333333 4 4 11111 4 99 6666 666666666666 0 2 7 8 4 11 1 99 6666 0 99 99 4 7 4 3 7 7 99 1111 8 22 0 0 5 0 8 8 0 8 0 2 8 2 7 7 2 3333333333333333333333333333333333333333333333333 8 0 0 0 6
consensus : NTTTTTGTTGTTGTTTTTTT-T-T-TT-TTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTA--------TCTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
Reference ( family-1375 ) : NTTTTTGTTGTTGTTTTTTT-T-T-CT-TTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTA--------TCTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
gi|1 : -GTGCACATATAAAAGAGAA---ATAGTA-----ACGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGTACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACGATAATGTATCTGGGAGATAACT--------------GAAAT-A----GGTGGGGGGGGGGGGGG--------G--------------GGT---------G-ATAGGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCATGTACACCAAAAGTGTCTTTATATA----------------T-GTCATGAAACAATTCCCA--AGTTTTCAAAAATA--TATTGTATTTGTTT----TC-A--GTGATAG--TTATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATAAGTTTT-GTGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTAGATTATTTTATTTATATTCTTATCATACATT--AAAAAAAAAAGG-TCTTGTTCTTATCGAAATAGGATA-TTTTTATGGACATCCGGTCTTGCAAAATGTGTAATATTT
gi|1 : ATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCGAATTG-CTTCGTTAAAATTA--------T--AT---GTTTTA-----------TTCCATGATGTTTTTTTCCACCAGAAATATCATTGTTATGATTAAATATAAAATATATATCTAGTATACC-TTTTTTCTTGTTCTCGTATATTATGACAGGGTTAGGTATAATCGGACTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttgtatcttttgttatcaaatatggccatgaaaacactgttttccgaattgcttcgttaaaattatatgttttattccatgatgtttttttccaccagaaatatcattgttatgattaaatataaaatatatatctagtataccttttttcttgttctcgtatattatgacagggttaggtataatcggactttgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|10 : gtgcacatataaaagagaaatagtaacgattgaaattgtatatgttctcactttcattcaatattcacacattgctttcatgtactgtttaaactggtagttaaacctagtaaatattatattgtaattactatcctttatacgataatgtatctgggagataactgaaataggtgggggggggggggggggtgataggggagggggttctctggcttgaagcttttgttttcaaacatgcatgtacaccaaaagtgtctttatatatgtcatgaaacaattcccaagttttcaaaaatatattgtatttgttttcagtgatagttatttctttgtatgttttatataaaagttgaagtctgagctggagtgttttaaaatttaaataagttttgtgcatctacaatagtatatgtaatattttgtctctaactgaatgagctagattattttatttatattcttatcatacattaaaaaaaaaaggtcttgttcttatcgaaataggatatttttatggacatccggtcttgcaaaatgtgtaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACAAACTGAAA---ATTGTA------TGATTGAAATTGT-AT--GTTCTCA---CTTTCATTCAATATT---CACAC-TTGCTTTCATGCACTGTTAAAACTGGTAGTTAAACCTAGTATATATTATATTGTAATTATTATCCTTTATACAATAATGTTTCTGGGTGATAACT--------------GAAAA-A-----A------------GGG--------GAGGTGGGGGAATAAGG----------G-ATAAAGGAGG-GG-GTTCCCT-----G-GC--TTG----AAGCTTTTG------------TTTTA-AAACATGCACGTTCATCAAAAGTGTC-TTATATACAAAACTAAGTAAGTAC-GTCATGAAACAATTTCCA--AG---------ATA--TA-TATATTTGATTGAAACC-ACTGTGAT-G--TTGTATCTTTGTATtgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|11 : TTTTTATT--TATTTATTTAT-T-TT-TTTGGTGTTTT---T------TTTTCG-GTTTCAGATTCCAAAGACGAGTCCCGCTT-ATTCTCCCCGTCTTATGCTGTATGAGGGGTCGATGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----TTGATTGAAATTGT-ATTTGTTCTCA---CTTTCATTCAATATT---TACATACTGCTTTCATGCACTGATTAAACTGGTAATTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACA
gi|12 : A-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACAAATTGCTTCCATGCACTGTTAAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATGTGGGAGATAACT--------------GAAGA-A-----A------------AGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-AC--TTG----AAGCTTTT-------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATATAAAACTAACTAAGTAT-GCCATGAAACAATTCACA--Atcaaaagtgtc
gi|13 : ACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTTGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTTTTATCATACAT
gi|14 : A-GTGCACATATAAAAGAGAA---ATAATATTCT-ATGATTGAAATTGT-ATAGGTTCTCA---CTTTCATTCAATAAT---GACACACTGCTTTCATGCACCGTTTGAACTGATAATTATACCTA------------TTGTAATTATTATCCTTTATACAAAAATGTATCTGGGAGATAACT--------------GAAAA-A----AA------------GGG--------G--------------GGAGGTGGACAAA-ATAAGGGAGG-GG-GTTATCT-----G-
gi|15 : GTTGTTGTTTTTTT-TGTACTGTTCTGTGCTTCAAATGGACAGTTTTC-TATTTTAGACTCCATA-TGGAGTCCCACTT-ATTCTCCACATCTCATTCTGTATGAATGATAGAAGAGAAACA-TCCCC-CATACAACATACA-AT---------GTATAAAAGAGGA---ATA
gi|17 : CGTTCCATACTCTAT-GTGGAGTC--ATTTCATTTCCCCCGTCTCATGCTGCATTAAAGATCAAGGAGTAACA-TCCCCTCATACAGCTTACAGACAATTTAAACATAT--ATGAGGA---ATa
gi|18 : tTTT-ATTTTCCCCGTCATATGGTGGGACAGGGGTCAGGGAAGACCA-TCCACTGTCACACCTTACA-TCA---TATACA-ATAATAGA
gi|19 : g-ATTCTCCCCGTCTCATGCTGTATGAGGAGTTGAGGAGGAACA-CCCTCTCATGCACCTTACA-ATAA-GTGCACATATAAGAGAGAA---ATcttatatatatattca
gi|2 : TTTTTGTTGTTGTTTTTTT-T-T-TT-TT-GGTGTTTT---T------TT---GCGTTTCAGACTCCAAAGTGGATTCTCATTT-ATTTTCCCCGTCTCATGCTTTATGAGGGGTCAAGGAGGAACA-TCCCCTTATACAGCTTACA-CTAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATTATTGAAATTGT-ATATATTCTGA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTTTACCTAGTAAATATTATATTGCAATTACAATCCTTTATACAATAATGTATCTGGGAGATATCT--------------GAAAA-A----GA------------GGG--------G--------------A-------------ATAAGGGAGG-GG-GGTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACATACATCAAACGTGTCTTTATATACAAAACTAAGTAAGTAT-GTAATGAAACAATTCCCA--AGTTTTCGAAAACA--TATTGTATTTGTTT----TC-T--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTGTCTGAATGAGCTGGATTATTTTATATATATTCTCATCATACATTCCAAACATAAATGATTTTTGTTCTTATGGAAATGGGATATATTTTATGGACATCCAGTCTTGCAAAATATGTAGTATTTTTTGTGT-TTCTTTACATTCACACAAT-AATGATAGATTGTCTCGGTGGTATATGAGCAAAATGAACACAGTGGACTATCCAGTCGTTTTATCTTATGTAGAAAATCGTTTGTTGCCAGTATATTATGATTGATCCGTGACTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAAGATAGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAA------------CTAT---GT---------------TT-------------TTCCACTTGGAATTTCATTGCTATGATTCAATATAAGATACATATCTTGAATACCTTTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGACCGAACTT
gi|20 : tATTT-ATTCCCTTCGTC-------GTATGAAATGTCAAGGA-GAACGTTCTCTTTATACAACTTTCA-A
gi|3 : cttAA-GTGCACATATAATAGAGAA---ATAGTA-----ATGACTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACACTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGA--ACT--------------GAAAA-A----GGAGGGT-------GGG--------G--------------GG----------GCGTAAGGGATG-GG-GTTTTCT-----G-GC--TTG----AAGCTTTTG------------TTTTT-AAACATGCACGTACATCAAAAGTGTCTTTATACA----ACTATGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--AATTGTATTTGTTT----TC-A--GTGATAT--ATATTTCTTTGTATATTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAACAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATGATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTTATGGAAATGGGATATTTTTTATTGACATCCAGTCTT-CAATTTGTGTAGTATTTTTTGTGC-TTCTTTACATTCCCACAATAAATGATAGATTGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTATCCAGTAGTTTTATCTTATGTAAAAAATTATTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATTTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAGTTGTTTTTGTCAAAATTA----------TAT---GTTTTATTCCATGATGTTT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACAT-------ATACA-TATTCTCTTTTTCATGTATATTTTGATATGGTTAGGTATGATCGGACTTa
gi|4 : GTCTCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGATCAATGAGAAACG-TCACCTCATATAGCTTACA-Atgaagcttattacatgtatttgcttttattatttttttcatttttttaaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtagtctat
gi|4 : TCTCAATATTTTCGTTCAATATTACACACACATCGCTTTCATGCGCTGATTAAACTAGTAATTAAACCTAATAAATATTATATTGTAGTTATTATCCTTTATACTGTAAAATATCTGGGAGAAAACA--------------GAAAA-A-----A------------GGGAAGAAAAAG--------------AA----------A-ATAAGAGAGT-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTGTTCTTCTTTTGATTTTT-AAATATGCATGTTCATTAGAA--------ACA---AAAACTAAGTAAGTAT-GTCATATAAGAATTCCCA--TGTTTTCAAAAGTA--TATTGTATTTGTTT----TTAA--GTAAAAG--ATATTTCTTCGTACGTC-------GAAGTTGAAGTCTGAGCTGGAGTG---------------TATTTTTCGAGCATC-----TAGTATATA--TA----ACTGTATGCCTCTAACTGGATGAACTTGATTATTTTACTAATATTTTTATCATATATTCCAAAATTAAATGAGGTTACATCTAACGAAAATGGGATGCTTTTGATGGACATCCAGTCTTGCAAAATGTGTAGTA-----TGTGTGTTGTTCACATTCCCACAATAAATGATAGATCGTTT-----GTAGTTAAGCTAAATGAGTACAGTTGACTcgtctcaatattttcgttcaatattacacacacatcgctttcatgcgctgattaaactagtaattaaacctaataaatattatattgtagttattatcctttatactgtaaaatatctgggagaaaacagaaaaaagggaagaaaaagaaaataagagagtgggttctctggcttgaagcttttgttcttcttttgatttttaaatatgcatgttcattagaaacaaaaactaagtaagtatgtcatataagaattcccatgttttcaaaagtatattgtatttgtttttaagtaaaagatatttcttcgtacgtcgaagttgaagtctgagctggagtgtatttttcgagcatctagtatatataactgtatgcctctaactggatgaacttgattattttactaatatttttatcatatattccaaaattaaatgaggttacatctaacgaaaatgggatgcttttgatggacatccagtcttgcaaaatgtgtagtatgtgtgttgttcacattcccacaataaatgatagatcgtttgtagttaagctaaatgagtacagttgact
gi|5 : gtctcatttattctccccgtctcatgctgtatgagggatcaatgagaaacgtcacctcatatagcttacaacgTTTGTTCTAATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATTGTTTCGGTGATAGATGAGCAAAATGAACACAGTGGACTTTCGAGTAGTTTTATCTTATGTAGAACAGTGTTTGTTGCCAGTATATTATGACTGATCTGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATGG-CTTTGTCAAAATTATGTTTTATTCCAT---GATGT------------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATAGC-TTTTTTCCTTTTCAGGTATATTTTGATAGGGTTAGGTAAAATCGGACTT
gi|6 : TATATTC--GTCATATATTCAAAAGATG--TG--TTTTGTTGTAATGGAAATGGGATAATTTATGTTGACATTCAGACTTCTCAAATATGTAATATTGTTTGTGT-TTGTTCACATTCCCATTATAAATACAAGATCGCCTCAGTGGAAGATGAGCAGAAAAAACCCGGT--ACTTTT---TTTTTTTATCTTTTACAGAAAATTGATTGTTCCCAAT------------------------AACTACTGCCGTATTGTTTCTTTTGTTATTAAATATGAACACGCAAAGCCATGGTTGCCAAATTG-CTTTATCAAACTGATGT-----TTTATTCCATTATA-----------TT-------------TTCCGCTAGAAATTTCATTGTCA-GTTTCAAAATAATATAtgaagcttattatttgcttttattatttttttctttttttttttaaattttgaattgcagtgatgatactgtggtattgtagaaagtttatattaatactgtatatagtttttaattcttgaagagaatataaat
gi|7 : tatatatatataAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-CTATGTTCTCG---CTTTCATTCAATATT---CAAACATTGCTTTCCTGCACTGTTTAAACGGGTAGTTAAACCTAATAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAAATTAATGATAGTGAATGGAAA-ACCACGG------------GGGTGGGGAT-G--------------GG----------G-GTAAGGGAGGTGG-GTTCTCT-----G-GC--TTA----AAGCTTTTG------------TTTTC-AAACATGCGCGTACATCAAAAGTGTCTTTATGTACAAAACTTAGTAAGT--------------------------TTTAAAAACCA--TATTGCATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATGTAAAAGTTTAAGTCTGATCTGGAGTGTTTTAAAATGCAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatttcatgtatatttaaaaatgggttggttatgacagaactttgcagtatattattttctttaattactgcttctatttattaaaacaggtatagtgacttaatgaccgtgattatactggtggt
gi|8 : TGCAAATATATAAAAGGATTTACAGTATTATAATGGCTATAACCATTATATGGTCTCA---CTT-CA---AAGGGC---TAAAAAAAGTTCTCTTGCACAGTTTAAACTA-CA--TAAACCTATT---TTTTATACTATAACAAATATCTTCTTTACAACATTCGACATAGGAAATAACC--------------GAAAATC----GA------------GGATATACTC-G--------------TA----------A-ATA-GGGAGG-ATTGTCCTCTTACATGTGCCCTTGTTCTAA--TTTTG------------TTTTTTAAACATGTA---AT-TTATAATTTTCTTTATAC-CA---TTAAGTA--TATCGTCA----ACCATTTCCATTA-TTTTCAAGAACACGTATT--ATTCGTTT----TC-A--GT-ACAGTAATATTTC--GGTATGTTTT-TATAAAATTT------TGAGCTGCAG-GGTTTAAAACGTTCAT--TTTTTTGAGCATCTACAATAATATATAATTATAGTACATGCAGTTTCTAATTGGATGAaa
gi|9 : atTGATTGAAACCACTGTGATGTTGTATCTTT-GT-ATCAAATATGGCCATG-AAAACACTGTTTT-------------------ATT----------CCAT---GATGTA-----------TT-------------T-CCACTAAGAGTTTCATTGTTATGATTCAAAATAAAATACATATCTTGAATACC-TTTTTTCTTGTTCATGTGTATTTTGATAGGGTTAGGTATGATCGGACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGTTGTTCTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 1 5555555555 11111 22222 22222222222222 0000000000000000000000000000000000000000000000000000000000 11111 1111 222222222222 1111 1111 11 8888888888888888888888888888888888888888888888888
lowQualScore : 6 77777 2 2222222222 77777 666 6 5 0 5 0 5 3 555 00000 4 777 777 0 66666666666666 4 4444444444444444444444444444444444444444444444444444444444 4 4 11111 4 66 0000 555555555555 5 0 5 1 4 66 0 66 0000 5 66 66 1 0 1 1 1 1 77 2222 0 44 1 6 2 8 0 8 1 8 1 3 0 0 6 6 2 8888888888888888888888888888888888888888888888888 0 1 1 8 0
lowQualScore : . ..... . .......... ..... ... . . . . . . . ... ..... . ... ... . .............. . .......................................................... . . ..... . .. .... ............ . . . . . .. . .. .... . .. .. . . . . . . .. .... . .. . . . . . . . . . . . . . . . ................................................. . . . . .
lowQualScore : 7 77777 0 7777777777 88888 888 4 0 4 0 2 0 6 888 66666 4 000 000 7 11111111111111 4 3333333333333333333333333333333333333333333333333333333333 4 4 11111 4 99 6666 666666666666 0 2 7 8 4 11 1 99 6666 0 99 99 4 7 4 3 7 7 99 1111 8 22 0 0 5 0 8 8 0 8 0 2 8 2 7 7 2 3333333333333333333333333333333333333333333333333 8 0 0 0 6
consensus : NTTTTTGTTGTTGTTTTTTT-T---TTTTTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTA--------TCTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
Reference ( family-1375 ) : NTTTTTGTTGTTGTTTTTTT-T---TTTTTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTA--------TCTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
gi|1 : -GTGCACATATAAAAGAGAA---ATAGTA-----ACGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGTACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACGATAATGTATCTGGGAGATAACT--------------GAAAT-A----GGTGGGGGGGGGGGGGG--------G--------------GGT---------G-ATAGGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCATGTACACCAAAAGTGTCTTTATATA----------------T-GTCATGAAACAATTCCCA--AGTTTTCAAAAATA--TATTGTATTTGTTT----TC-A--GTGATAG--TTATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATAAGTTTT-GTGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTAGATTATTTTATTTATATTCTTATCATACATT--AAAAAAAAAAGG-TCTTGTTCTTATCGAAATAGGATA-TTTTTATGGACATCCGGTCTTGCAAAATGTGTAATATTT
gi|1 : ATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCGAATTG-CTTCGTTAAAATTA--------T--AT---GTTTTA-----------TTCCATGATGTTTTTTTCCACCAGAAATATCATTGTTATGATTAAATATAAAATATATATCTAGTATACC-TTTTTTCTTGTTCTCGTATATTATGACAGGGTTAGGTATAATCGGACTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttgtatcttttgttatcaaatatggccatgaaaacactgttttccgaattgcttcgttaaaattatatgttttattccatgatgtttttttccaccagaaatatcattgttatgattaaatataaaatatatatctagtataccttttttcttgttctcgtatattatgacagggttaggtataatcggactttgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|10 : gtgcacatataaaagagaaatagtaacgattgaaattgtatatgttctcactttcattcaatattcacacattgctttcatgtactgtttaaactggtagttaaacctagtaaatattatattgtaattactatcctttatacgataatgtatctgggagataactgaaataggtgggggggggggggggggtgataggggagggggttctctggcttgaagcttttgttttcaaacatgcatgtacaccaaaagtgtctttatatatgtcatgaaacaattcccaagttttcaaaaatatattgtatttgttttcagtgatagttatttctttgtatgttttatataaaagttgaagtctgagctggagtgttttaaaatttaaataagttttgtgcatctacaatagtatatgtaatattttgtctctaactgaatgagctagattattttatttatattcttatcatacattaaaaaaaaaaggtcttgttcttatcgaaataggatatttttatggacatccggtcttgcaaaatgtgtaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACAAACTGAAA---ATTGTA------TGATTGAAATTGT-AT--GTTCTCA---CTTTCATTCAATATT---CACAC-TTGCTTTCATGCACTGTTAAAACTGGTAGTTAAACCTAGTATATATTATATTGTAATTATTATCCTTTATACAATAATGTTTCTGGGTGATAACT--------------GAAAA-A-----A------------GGG--------GAGGTGGGGGAATAAGG----------G-ATAAAGGAGG-GG-GTTCCCT-----G-GC--TTG----AAGCTTTTG------------TTTTA-AAACATGCACGTTCATCAAAAGTGTC-TTATATACAAAACTAAGTAAGTAC-GTCATGAAACAATTTCCA--AG---------ATA--TA-TATATTTGATTGAAACC-ACTGTGAT-G--TTGTATCTTTGTATtgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|11 : TTTTTATT--TATTTATTTAT---TTTTTTGGTGTTTT---T------TTTTCG-GTTTCAGATTCCAAAGACGAGTCCCGCTT-ATTCTCCCCGTCTTATGCTGTATGAGGGGTCGATGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----TTGATTGAAATTGT-ATTTGTTCTCA---CTTTCATTCAATATT---TACATACTGCTTTCATGCACTGATTAAACTGGTAATTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACA
gi|12 : A-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACAAATTGCTTCCATGCACTGTTAAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATGTGGGAGATAACT--------------GAAGA-A-----A------------AGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-AC--TTG----AAGCTTTT-------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATATAAAACTAACTAAGTAT-GCCATGAAACAATTCACA--Atcaaaagtgtc
gi|13 : ACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTTGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTTTTATCATACAT
gi|14 : A-GTGCACATATAAAAGAGAA---ATAATATTCT-ATGATTGAAATTGT-ATAGGTTCTCA---CTTTCATTCAATAAT---GACACACTGCTTTCATGCACCGTTTGAACTGATAATTATACCTA------------TTGTAATTATTATCCTTTATACAAAAATGTATCTGGGAGATAACT--------------GAAAA-A----AA------------GGG--------G--------------GGAGGTGGACAAA-ATAAGGGAGG-GG-GTTATCT-----G-
gi|15 : GTTGTTGTTTTTTT-TGTACTGTTCTGTGCTTCAAATGGACAGTTTTC-TATTTTAGACTCCATA-TGGAGTCCCACTT-ATTCTCCACATCTCATTCTGTATGAATGATAGAAGAGAAACA-TCCCC-CATACAACATACA-AT---------GTATAAAAGAGGA---ATA
gi|17 : CGTTCCATACTCTAT-GTGGAGTC--ATTTCATTTCCCCCGTCTCATGCTGCATTAAAGATCAAGGAGTAACA-TCCCCTCATACAGCTTACAGACAATTTAAACATAT--ATGAGGA---ATa
gi|18 : tTTT-ATTTTCCCCGTCATATGGTGGGACAGGGGTCAGGGAAGACCA-TCCACTGTCACACCTTACA-TCA---TATACA-ATAATAGA
gi|19 : g-ATTCTCCCCGTCTCATGCTGTATGAGGAGTTGAGGAGGAACA-CCCTCTCATGCACCTTACA-ATAA-GTGCACATATAAGAGAGAA---ATcttatatatatattca
gi|2 : TTTTTGTTGTTGTTTTTTT-T---TTTTT-GGTGTTTT---T------TT---GCGTTTCAGACTCCAAAGTGGATTCTCATTT-ATTTTCCCCGTCTCATGCTTTATGAGGGGTCAAGGAGGAACA-TCCCCTTATACAGCTTACA-CTAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATTATTGAAATTGT-ATATATTCTGA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTTTACCTAGTAAATATTATATTGCAATTACAATCCTTTATACAATAATGTATCTGGGAGATATCT--------------GAAAA-A----GA------------GGG--------G--------------A-------------ATAAGGGAGG-GG-GGTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACATACATCAAACGTGTCTTTATATACAAAACTAAGTAAGTAT-GTAATGAAACAATTCCCA--AGTTTTCGAAAACA--TATTGTATTTGTTT----TC-T--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTGTCTGAATGAGCTGGATTATTTTATATATATTCTCATCATACATTCCAAACATAAATGATTTTTGTTCTTATGGAAATGGGATATATTTTATGGACATCCAGTCTTGCAAAATATGTAGTATTTTTTGTGT-TTCTTTACATTCACACAAT-AATGATAGATTGTCTCGGTGGTATATGAGCAAAATGAACACAGTGGACTATCCAGTCGTTTTATCTTATGTAGAAAATCGTTTGTTGCCAGTATATTATGATTGATCCGTGACTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAAGATAGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAA------------CTAT---GT---------------TT-------------TTCCACTTGGAATTTCATTGCTATGATTCAATATAAGATACATATCTTGAATACCTTTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGACCGAACTT
gi|20 : tATTT-ATTCCCTTCGTC-------GTATGAAATGTCAAGGA-GAACGTTCTCTTTATACAACTTTCA-A
gi|3 : cttAA-GTGCACATATAATAGAGAA---ATAGTA-----ATGACTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACACTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGA--ACT--------------GAAAA-A----GGAGGGT-------GGG--------G--------------GG----------GCGTAAGGGATG-GG-GTTTTCT-----G-GC--TTG----AAGCTTTTG------------TTTTT-AAACATGCACGTACATCAAAAGTGTCTTTATACA----ACTATGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--AATTGTATTTGTTT----TC-A--GTGATAT--ATATTTCTTTGTATATTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAACAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATGATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTTATGGAAATGGGATATTTTTTATTGACATCCAGTCTT-CAATTTGTGTAGTATTTTTTGTGC-TTCTTTACATTCCCACAATAAATGATAGATTGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTATCCAGTAGTTTTATCTTATGTAAAAAATTATTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATTTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAGTTGTTTTTGTCAAAATTA----------TAT---GTTTTATTCCATGATGTTT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACAT-------ATACA-TATTCTCTTTTTCATGTATATTTTGATATGGTTAGGTATGATCGGACTTa
gi|4 : GTCTCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGATCAATGAGAAACG-TCACCTCATATAGCTTACA-Atgaagcttattacatgtatttgcttttattatttttttcatttttttaaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtagtctat
gi|4 : TCTCAATATTTTCGTTCAATATTACACACACATCGCTTTCATGCGCTGATTAAACTAGTAATTAAACCTAATAAATATTATATTGTAGTTATTATCCTTTATACTGTAAAATATCTGGGAGAAAACA--------------GAAAA-A-----A------------GGGAAGAAAAAG--------------AA----------A-ATAAGAGAGT-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTGTTCTTCTTTTGATTTTT-AAATATGCATGTTCATTAGAA--------ACA---AAAACTAAGTAAGTAT-GTCATATAAGAATTCCCA--TGTTTTCAAAAGTA--TATTGTATTTGTTT----TTAA--GTAAAAG--ATATTTCTTCGTACGTC-------GAAGTTGAAGTCTGAGCTGGAGTG---------------TATTTTTCGAGCATC-----TAGTATATA--TA----ACTGTATGCCTCTAACTGGATGAACTTGATTATTTTACTAATATTTTTATCATATATTCCAAAATTAAATGAGGTTACATCTAACGAAAATGGGATGCTTTTGATGGACATCCAGTCTTGCAAAATGTGTAGTA-----TGTGTGTTGTTCACATTCCCACAATAAATGATAGATCGTTT-----GTAGTTAAGCTAAATGAGTACAGTTGACTcgtctcaatattttcgttcaatattacacacacatcgctttcatgcgctgattaaactagtaattaaacctaataaatattatattgtagttattatcctttatactgtaaaatatctgggagaaaacagaaaaaagggaagaaaaagaaaataagagagtgggttctctggcttgaagcttttgttcttcttttgatttttaaatatgcatgttcattagaaacaaaaactaagtaagtatgtcatataagaattcccatgttttcaaaagtatattgtatttgtttttaagtaaaagatatttcttcgtacgtcgaagttgaagtctgagctggagtgtatttttcgagcatctagtatatataactgtatgcctctaactggatgaacttgattattttactaatatttttatcatatattccaaaattaaatgaggttacatctaacgaaaatgggatgcttttgatggacatccagtcttgcaaaatgtgtagtatgtgtgttgttcacattcccacaataaatgatagatcgtttgtagttaagctaaatgagtacagttgact
gi|5 : gtctcatttattctccccgtctcatgctgtatgagggatcaatgagaaacgtcacctcatatagcttacaacgTTTGTTCTAATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATTGTTTCGGTGATAGATGAGCAAAATGAACACAGTGGACTTTCGAGTAGTTTTATCTTATGTAGAACAGTGTTTGTTGCCAGTATATTATGACTGATCTGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATGG-CTTTGTCAAAATTATGTTTTATTCCAT---GATGT------------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATAGC-TTTTTTCCTTTTCAGGTATATTTTGATAGGGTTAGGTAAAATCGGACTT
gi|6 : TATATTC--GTCATATATTCAAAAGATG--TG--TTTTGTTGTAATGGAAATGGGATAATTTATGTTGACATTCAGACTTCTCAAATATGTAATATTGTTTGTGT-TTGTTCACATTCCCATTATAAATACAAGATCGCCTCAGTGGAAGATGAGCAGAAAAAACCCGGT--ACTTTT---TTTTTTTATCTTTTACAGAAAATTGATTGTTCCCAAT------------------------AACTACTGCCGTATTGTTTCTTTTGTTATTAAATATGAACACGCAAAGCCATGGTTGCCAAATTG-CTTTATCAAACTGATGT-----TTTATTCCATTATA-----------TT-------------TTCCGCTAGAAATTTCATTGTCA-GTTTCAAAATAATATAtgaagcttattatttgcttttattatttttttctttttttttttaaattttgaattgcagtgatgatactgtggtattgtagaaagtttatattaatactgtatatagtttttaattcttgaagagaatataaat
gi|7 : tatatatatataAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-CTATGTTCTCG---CTTTCATTCAATATT---CAAACATTGCTTTCCTGCACTGTTTAAACGGGTAGTTAAACCTAATAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAAATTAATGATAGTGAATGGAAA-ACCACGG------------GGGTGGGGAT-G--------------GG----------G-GTAAGGGAGGTGG-GTTCTCT-----G-GC--TTA----AAGCTTTTG------------TTTTC-AAACATGCGCGTACATCAAAAGTGTCTTTATGTACAAAACTTAGTAAGT--------------------------TTTAAAAACCA--TATTGCATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATGTAAAAGTTTAAGTCTGATCTGGAGTGTTTTAAAATGCAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatttcatgtatatttaaaaatgggttggttatgacagaactttgcagtatattattttctttaattactgcttctatttattaaaacaggtatagtgacttaatgaccgtgattatactggtggt
gi|8 : TGCAAATATATAAAAGGATTTACAGTATTATAATGGCTATAACCATTATATGGTCTCA---CTT-CA---AAGGGC---TAAAAAAAGTTCTCTTGCACAGTTTAAACTA-CA--TAAACCTATT---TTTTATACTATAACAAATATCTTCTTTACAACATTCGACATAGGAAATAACC--------------GAAAATC----GA------------GGATATACTC-G--------------TA----------A-ATA-GGGAGG-ATTGTCCTCTTACATGTGCCCTTGTTCTAA--TTTTG------------TTTTTTAAACATGTA---AT-TTATAATTTTCTTTATAC-CA---TTAAGTA--TATCGTCA----ACCATTTCCATTA-TTTTCAAGAACACGTATT--ATTCGTTT----TC-A--GT-ACAGTAATATTTC--GGTATGTTTT-TATAAAATTT------TGAGCTGCAG-GGTTTAAAACGTTCAT--TTTTTTGAGCATCTACAATAATATATAATTATAGTACATGCAGTTTCTAATTGGATGAaa
gi|9 : atTGATTGAAACCACTGTGATGTTGTATCTTT-GT-ATCAAATATGGCCATG-AAAACACTGTTTT-------------------ATT----------CCAT---GATGTA-----------TT-------------T-CCACTAAGAGTTTCATTGTTATGATTCAAAATAAAATACATATCTTGAATACC-TTTTTTCTTGTTCATGTGTATTTTGATAGGGTTAGGTATGATCGGACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGTTGTTCTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 1 5555555555 11111 22222 22222222222222 0000000000000000000000000000000000000000000000000000000000 11111 1111 222222222222 1111 1111 11 8888888888888888888888888888888888888888888888888
lowQualScore : 6 77777 2 2222222222 77777 666 6 5 0 5 0 5 3 555 00000 4 777 777 0 66666666666666 4 4444444444444444444444444444444444444444444444444444444444 4 4 11111 4 66 0000 555555555555 5 0 5 1 4 66 0 66 0000 5 66 66 1 0 1 1 1 1 77 2222 0 44 1 6 2 8 0 8 1 8 1 3 0 0 6 6 2 8888888888888888888888888888888888888888888888888 0 1 1 8 0
lowQualScore : . ..... . .......... ..... ... . . . . . . . ... ..... . ... ... . .............. . .......................................................... . . ..... . .. .... ............ . . . . . .. . .. .... . .. .. . . . . . . .. .... . .. . . . . . . . . . . . . . . . ................................................. . . . . .
lowQualScore : 7 77777 0 7777777777 88888 888 4 0 4 0 2 0 6 888 66666 4 000 000 7 11111111111111 4 3333333333333333333333333333333333333333333333333333333333 4 4 11111 4 99 6666 666666666666 0 2 7 8 4 11 1 99 6666 0 99 99 4 7 4 3 7 7 99 1111 8 22 0 0 5 0 8 8 0 8 0 2 8 2 7 7 2 3333333333333333333333333333333333333333333333333 8 0 0 0 6
consensus : NTTTTTGTTGTTGTTTTTTT-T---TTTTTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTA--------TCTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
Reference ( family-1375 ) : NTTTTTGTTGTTGTTTTTTT-T---TTTTTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTA--------TCTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
gi|1 : -GTGCACATATAAAAGAGAA---ATAGTA-----ACGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGTACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACGATAATGTATCTGGGAGATAACT--------------GAAAT-A----GGTGGGGGGGGGGGGGG--------G--------------GGT---------G-ATAGGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCATGTACACCAAAAGTGTCTTTATATA----------------T-GTCATGAAACAATTCCCA--AGTTTTCAAAAATA--TATTGTATTTGTTT----TC-A--GTGATAG--TTATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATAAGTTTT-GTGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTAGATTATTTTATTTATATTCTTATCATACATT--AAAAAAAAAAGG-TCTTGTTCTTATCGAAATAGGATA-TTTTTATGGACATCCGGTCTTGCAAAATGTGTAATATTT
gi|1 : ATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCGAATTG-CTTCGTTAAAATTA--------T--AT---GTTTTA-----------TTCCATGATGTTTTTTTCCACCAGAAATATCATTGTTATGATTAAATATAAAATATATATCTAGTATACC-TTTTTTCTTGTTCTCGTATATTATGACAGGGTTAGGTATAATCGGACTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttgtatcttttgttatcaaatatggccatgaaaacactgttttccgaattgcttcgttaaaattatatgttttattccatgatgtttttttccaccagaaatatcattgttatgattaaatataaaatatatatctagtataccttttttcttgttctcgtatattatgacagggttaggtataatcggactttgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|10 : gtgcacatataaaagagaaatagtaacgattgaaattgtatatgttctcactttcattcaatattcacacattgctttcatgtactgtttaaactggtagttaaacctagtaaatattatattgtaattactatcctttatacgataatgtatctgggagataactgaaataggtgggggggggggggggggtgataggggagggggttctctggcttgaagcttttgttttcaaacatgcatgtacaccaaaagtgtctttatatatgtcatgaaacaattcccaagttttcaaaaatatattgtatttgttttcagtgatagttatttctttgtatgttttatataaaagttgaagtctgagctggagtgttttaaaatttaaataagttttgtgcatctacaatagtatatgtaatattttgtctctaactgaatgagctagattattttatttatattcttatcatacattaaaaaaaaaaggtcttgttcttatcgaaataggatatttttatggacatccggtcttgcaaaatgtgtaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACAAACTGAAA---ATTGTA------TGATTGAAATTGT-AT--GTTCTCA---CTTTCATTCAATATT---CACAC-TTGCTTTCATGCACTGTTAAAACTGGTAGTTAAACCTAGTATATATTATATTGTAATTATTATCCTTTATACAATAATGTTTCTGGGTGATAACT--------------GAAAA-A-----A------------GGG--------GAGGTGGGGGAATAAGG----------G-ATAAAGGAGG-GG-GTTCCCT-----G-GC--TTG----AAGCTTTTG------------TTTTA-AAACATGCACGTTCATCAAAAGTGTC-TTATATACAAAACTAAGTAAGTAC-GTCATGAAACAATTTCCA--AG---------ATA--TA-TATATTTGATTGAAACC-ACTGTGAT-G--TTGTATCTTTGTATtgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|11 : TTTTTATT--TATTTATTTAT---TTTTTTGGTGTTTT---T------TTTTCG-GTTTCAGATTCCAAAGACGAGTCCCGCTT-ATTCTCCCCGTCTTATGCTGTATGAGGGGTCGATGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----TTGATTGAAATTGT-ATTTGTTCTCA---CTTTCATTCAATATT---TACATACTGCTTTCATGCACTGATTAAACTGGTAATTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACA
gi|12 : A-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACAAATTGCTTCCATGCACTGTTAAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATGTGGGAGATAACT--------------GAAGA-A-----A------------AGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-AC--TTG----AAGCTTTT-------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATATAAAACTAACTAAGTAT-GCCATGAAACAATTCACA--Atcaaaagtgtc
gi|13 : ACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTTGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTTTTATCATACAT
gi|14 : A-GTGCACATATAAAAGAGAA---ATAATATTCT-ATGATTGAAATTGT-ATAGGTTCTCA---CTTTCATTCAATAAT---GACACACTGCTTTCATGCACCGTTTGAACTGATAATTATACCTA------------TTGTAATTATTATCCTTTATACAAAAATGTATCTGGGAGATAACT--------------GAAAA-A----AA------------GGG--------G--------------GGAGGTGGACAAA-ATAAGGGAGG-GG-GTTATCT-----G-
gi|15 : GTTGTTGTTTTTTT-TGTACTGTTCTGTGCTTCAAATGGACAGTTTTC-TATTTTAGACTCCATA-TGGAGTCCCACTT-ATTCTCCACATCTCATTCTGTATGAATGATAGAAGAGAAACA-TCCCC-CATACAACATACA-AT---------GTATAAAAGAGGA---ATA
gi|17 : CGTTCCATACTCTAT-GTGGAGTC--ATTTCATTTCCCCCGTCTCATGCTGCATTAAAGATCAAGGAGTAACA-TCCCCTCATACAGCTTACAGACAATTTAAACATAT--ATGAGGA---ATa
gi|18 : tTTT-ATTTTCCCCGTCATATGGTGGGACAGGGGTCAGGGAAGACCA-TCCACTGTCACACCTTACA-TCA---TATACA-ATAATAGA
gi|19 : g-ATTCTCCCCGTCTCATGCTGTATGAGGAGTTGAGGAGGAACA-CCCTCTCATGCACCTTACA-ATAA-GTGCACATATAAGAGAGAA---ATcttatatatatattca
gi|2 : TTTTTGTTGTTGTTTTTTT-T---TTTTT-GGTGTTTT---T------TT---GCGTTTCAGACTCCAAAGTGGATTCTCATTT-ATTTTCCCCGTCTCATGCTTTATGAGGGGTCAAGGAGGAACA-TCCCCTTATACAGCTTACA-CTAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATTATTGAAATTGT-ATATATTCTGA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTTTACCTAGTAAATATTATATTGCAATTACAATCCTTTATACAATAATGTATCTGGGAGATATCT--------------GAAAA-A----GA------------GGG--------G--------------A-------------ATAAGGGAGG-GG-GGTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACATACATCAAACGTGTCTTTATATACAAAACTAAGTAAGTAT-GTAATGAAACAATTCCCA--AGTTTTCGAAAACA--TATTGTATTTGTTT----TC-T--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTGTCTGAATGAGCTGGATTATTTTATATATATTCTCATCATACATTCCAAACATAAATGATTTTTGTTCTTATGGAAATGGGATATATTTTATGGACATCCAGTCTTGCAAAATATGTAGTATTTTTTGTGT-TTCTTTACATTCACACAAT-AATGATAGATTGTCTCGGTGGTATATGAGCAAAATGAACACAGTGGACTATCCAGTCGTTTTATCTTATGTAGAAAATCGTTTGTTGCCAGTATATTATGATTGATCCGTGACTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAAGATAGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAA------------CTAT---GT---------------TT-------------TTCCACTTGGAATTTCATTGCTATGATTCAATATAAGATACATATCTTGAATACCTTTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGACCGAACTT
gi|20 : tATTT-ATTCCCTTCGTC-------GTATGAAATGTCAAGGA-GAACGTTCTCTTTATACAACTTTCA-A
gi|3 : cttAA-GTGCACATATAATAGAGAA---ATAGTA-----ATGACTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACACTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGA--ACT--------------GAAAA-A----GGAGGGT-------GGG--------G--------------GG----------GCGTAAGGGATG-GG-GTTTTCT-----G-GC--TTG----AAGCTTTTG------------TTTTT-AAACATGCACGTACATCAAAAGTGTCTTTATACA----ACTATGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--AATTGTATTTGTTT----TC-A--GTGATAT--ATATTTCTTTGTATATTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAACAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATGATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTTATGGAAATGGGATATTTTTTATTGACATCCAGTCTT-CAATTTGTGTAGTATTTTTTGTGC-TTCTTTACATTCCCACAATAAATGATAGATTGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTATCCAGTAGTTTTATCTTATGTAAAAAATTATTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATTTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAGTTGTTTTTGTCAAAATTA----------TAT---GTTTTATTCCATGATGTTT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACAT-------ATACA-TATTCTCTTTTTCATGTATATTTTGATATGGTTAGGTATGATCGGACTTa
gi|4 : GTCTCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGATCAATGAGAAACG-TCACCTCATATAGCTTACA-Atgaagcttattacatgtatttgcttttattatttttttcatttttttaaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtagtctat
gi|4 : TCTCAATATTTTCGTTCAATATTACACACACATCGCTTTCATGCGCTGATTAAACTAGTAATTAAACCTAATAAATATTATATTGTAGTTATTATCCTTTATACTGTAAAATATCTGGGAGAAAACA--------------GAAAA-A-----A------------GGGAAGAAAAAG--------------AA----------A-ATAAGAGAGT-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTGTTCTTCTTTTGATTTTT-AAATATGCATGTTCATTAGAA--------ACA---AAAACTAAGTAAGTAT-GTCATATAAGAATTCCCA--TGTTTTCAAAAGTA--TATTGTATTTGTTT----TTAA--GTAAAAG--ATATTTCTTCGTACGTC-------GAAGTTGAAGTCTGAGCTGGAGTG---------------TATTTTTCGAGCATC-----TAGTATATA--TA----ACTGTATGCCTCTAACTGGATGAACTTGATTATTTTACTAATATTTTTATCATATATTCCAAAATTAAATGAGGTTACATCTAACGAAAATGGGATGCTTTTGATGGACATCCAGTCTTGCAAAATGTGTAGTA-----TGTGTGTTGTTCACATTCCCACAATAAATGATAGATCGTTT-----GTAGTTAAGCTAAATGAGTACAGTTGACTcgtctcaatattttcgttcaatattacacacacatcgctttcatgcgctgattaaactagtaattaaacctaataaatattatattgtagttattatcctttatactgtaaaatatctgggagaaaacagaaaaaagggaagaaaaagaaaataagagagtgggttctctggcttgaagcttttgttcttcttttgatttttaaatatgcatgttcattagaaacaaaaactaagtaagtatgtcatataagaattcccatgttttcaaaagtatattgtatttgtttttaagtaaaagatatttcttcgtacgtcgaagttgaagtctgagctggagtgtatttttcgagcatctagtatatataactgtatgcctctaactggatgaacttgattattttactaatatttttatcatatattccaaaattaaatgaggttacatctaacgaaaatgggatgcttttgatggacatccagtcttgcaaaatgtgtagtatgtgtgttgttcacattcccacaataaatgatagatcgtttgtagttaagctaaatgagtacagttgact
gi|5 : gtctcatttattctccccgtctcatgctgtatgagggatcaatgagaaacgtcacctcatatagcttacaacgTTTGTTCTAATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATTGTTTCGGTGATAGATGAGCAAAATGAACACAGTGGACTTTCGAGTAGTTTTATCTTATGTAGAACAGTGTTTGTTGCCAGTATATTATGACTGATCTGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATGG-CTTTGTCAAAATTATGTTTTATTCCAT---GATGT------------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATAGC-TTTTTTCCTTTTCAGGTATATTTTGATAGGGTTAGGTAAAATCGGACTT
gi|6 : TATATTC--GTCATATATTCAAAAGATG--TG--TTTTGTTGTAATGGAAATGGGATAATTTATGTTGACATTCAGACTTCTCAAATATGTAATATTGTTTGTGT-TTGTTCACATTCCCATTATAAATACAAGATCGCCTCAGTGGAAGATGAGCAGAAAAAACCCGGT--ACTTTT---TTTTTTTATCTTTTACAGAAAATTGATTGTTCCCAAT------------------------AACTACTGCCGTATTGTTTCTTTTGTTATTAAATATGAACACGCAAAGCCATGGTTGCCAAATTG-CTTTATCAAACTGATGT-----TTTATTCCATTATA-----------TT-------------TTCCGCTAGAAATTTCATTGTCA-GTTTCAAAATAATATAtgaagcttattatttgcttttattatttttttctttttttttttaaattttgaattgcagtgatgatactgtggtattgtagaaagtttatattaatactgtatatagtttttaattcttgaagagaatataaat
gi|7 : tatatatatataAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-CTATGTTCTCG---CTTTCATTCAATATT---CAAACATTGCTTTCCTGCACTGTTTAAACGGGTAGTTAAACCTAATAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAAATTAATGATAGTGAATGGAAA-ACCACGG------------GGGTGGGGAT-G--------------GG----------G-GTAAGGGAGGTGG-GTTCTCT-----G-GC--TTA----AAGCTTTTG------------TTTTC-AAACATGCGCGTACATCAAAAGTGTCTTTATGTACAAAACTTAGTAAGT--------------------------TTTAAAAACCA--TATTGCATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATGTAAAAGTTTAAGTCTGATCTGGAGTGTTTTAAAATGCAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatttcatgtatatttaaaaatgggttggttatgacagaactttgcagtatattattttctttaattactgcttctatttattaaaacaggtatagtgacttaatgaccgtgattatactggtggt
gi|8 : TGCAAATATATAAAAGGATTTACAGTATTATAATGGCTATAACCATTATATGGTCTCA---CTT-CA---AAGGGC---TAAAAAAAGTTCTCTTGCACAGTTTAAACTA-CA--TAAACCTATT---TTTTATACTATAACAAATATCTTCTTTACAACATTCGACATAGGAAATAACC--------------GAAAATC----GA------------GGATATACTC-G--------------TA----------A-ATA-GGGAGG-ATTGTCCTCTTACATGTGCCCTTGTTCTAA--TTTTG------------TTTTTTAAACATGTA---AT-TTATAATTTTCTTTATAC-CA---TTAAGTA--TATCGTCA----ACCATTTCCATTA-TTTTCAAGAACACGTATT--ATTCGTTT----TC-A--GT-ACAGTAATATTTC--GGTATGTTTT-TATAAAATTT------TGAGCTGCAG-GGTTTAAAACGTTCAT--TTTTTTGAGCATCTACAATAATATATAATTATAGTACATGCAGTTTCTAATTGGATGAaa
gi|9 : atTGATTGAAACCACTGTGATGTTGTATCTTT-GT-ATCAAATATGGCCATG-AAAACACTGTTTT-------------------ATT----------CCAT---GATGTA-----------TT-------------T-CCACTAAGAGTTTCATTGTTATGATTCAAAATAAAATACATATCTTGAATACC-TTTTTTCTTGTTCATGTGTATTTTGATAGGGTTAGGTATGATCGGACTT
blockSeqs : G TGTA C AAATGGACAG TTCT AAG C C T G T TTT TTATA T ATA ACA TAATGATAGTGAAT T AGGGGAGGTGGGGGAATAAGGG T T TACAT T CC TTCT TTCTTCTTTTGA T C A C TT CG GAAA A CT TA A T T T T AT TAGT AT T T G G T A C A A C T C ATATGTTTTATTCCATGATGTTT T A T
blockSeqs : G T . T GC TA T . . . . . TTCT . . . . . CCACGGGGGTGGGGATGGGG . . . . . . . . T A . . . . . . . A T T T C . . AT T T G . T T G A A . . T ATGTTTTATTCCATGATGTTT T A .
blockSeqs : TG T . . . . . . . . . . . AAGGGGGGAGGTGGACAAA . . . . . . . . C A . . . . . . . A T T T C . . AG A C G . G T . T . . . T ATGTTTTATTCCATTATATT T A .
blockSeqs : . . . . . . . . . . . . AGGGAAGAAAAAGAAA . . . . . . . . C A . . . . . . . A T G T C . . . A T C . . . . T CCATGATGTATT . . .
blockSeqs : . . . . . . . . . . . GAGGATATACTCGTAA . . . . . . . . C A . . . . . . . . G G T C . . A A . . . . CTATGTTT
blockSeqs : . . . . . . . . . . . GGAGGGTGGGGGGGC . . . . . . . . C A . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . AAGGGGGG . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . GAGGGGA . . . . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : AT ATGTTTTATTCCATGATGTTT****************************
originalCons : NTTTTTGTTGTTGTTTTTTT-T---TTTTTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTA--------TCTAT---GTTNTA-----------TT-------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
finalCons : NTTTTTGTTGTTGTTTTTTT-T---TTTTTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAATTATGTTTTATTCCATGATGTTT----------------------------TTCCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGTTGTTCTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 22 5555555555 11111 22222 22222222222222 0000000000000000000000000000000000000000000000000000000000 11111 1111 222222222222 1111 1111 11 1111111
lowQualScore : 3 333 22 2222222222 77777 666 6 5 0 5 0 5 3 555 00000 4 777 777 0 66666666666666 4 4444444444444444444444444444444444444444444444444444444444 4 4 11111 4 66 0000 555555555555 5 0 5 1 4 66 0 66 0000 5 66 66 1 0 1 1 1 1 77 2222 0 44 1 6 2 8 0 8 1 8 1 3 0 0 6 6 2 1111111 3 2 99 0 1 1 8 0
lowQualScore : . ... .. .......... ..... ... . . . . . . . ... ..... . ... ... . .............. . .......................................................... . . ..... . .. .... ............ . . . . . .. . .. .... . .. .. . . . . . . .. .... . .. . . . . . . . . . . . . . . . ....... . . .. . . . . .
lowQualScore : 3 333 33 7777777777 88888 888 4 0 4 0 2 0 6 888 66666 4 000 000 7 11111111111111 4 3333333333333333333333333333333333333333333333333333333333 4 4 11111 4 99 6666 666666666666 0 2 7 8 4 11 1 99 6666 0 99 99 4 7 4 3 7 7 99 1111 8 22 0 0 5 0 8 8 0 8 0 2 8 2 7 7 2 5555555 2 5 22 8 0 0 0 6
consensus : NTTTTTGTT-GTTGTTTTTTTT---TTTTT-GGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAAT--TAT--GTTTTATTCCATGATGTTTTT--CCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
Reference ( family-1375 ) : NTTTTTGTT-GTTGTTTTTTTT---TTTTTCGGTGTTTT---T------TTTTCGCGTTTCAGACTCCANAGTGGAGTCCCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGGTCGAGGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAACT--------------GAAAA-A----GA------------GGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTNATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATCGTCTCGGTGGTAGATGAGCAAAATGAACACAGTNGACTNTCCAGTNGTTTTATCTTATGTAGAAAATTGTTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAAT--TAT--GTTTTATTCCATGATGTTTTT--CCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATACC-TTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGATCGGACTT
gi|1 : -GTGCACATATAAAAGAGAA---ATAGTA-----ACGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACATTGCTTTCATGTACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACGATAATGTATCTGGGAGATAACT--------------GAAAT-A----GGTGGGGGGGGGGGGGG--------G--------------GGT---------G-ATAGGGGAGG-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCATGTACACCAAAAGTGTCTTTATATA----------------T-GTCATGAAACAATTCCCA--AGTTTTCAAAAATA--TATTGTATTTGTTT----TC-A--GTGATAG--TTATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATAAGTTTT-GTGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTAGATTATTTTATTTATATTCTTATCATACATT--AAAAAAAAAAGG-TCTTGTTCTTATCGAAATAGGATA-TTTTTATGGACATCCGGTCTTGCAAAATGTGTAATATTT
gi|1 : ATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCGAATTG-CTTCGTTAAAAT--TATATGTTTTATTCCATGATGTTTTTTTCCACCAGAAATATCATTGTTATGATTAAATATAAAATATATATCTAGTATACC-TTTTTTCTTGTTCTCGTATATTATGACAGGGTTAGGTATAATCGGACTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttgtatcttttgttatcaaatatggccatgaaaacactgttttccgaattgcttcgttaaaattatatgttttattccatgatgtttttttccaccagaaatatcattgttatgattaaatataaaatatatatctagtataccttttttcttgttctcgtatattatgacagggttaggtataatcggactttgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|10 : gtgcacatataaaagagaaatagtaacgattgaaattgtatatgttctcactttcattcaatattcacacattgctttcatgtactgtttaaactggtagttaaacctagtaaatattatattgtaattactatcctttatacgataatgtatctgggagataactgaaataggtgggggggggggggggggtgataggggagggggttctctggcttgaagcttttgttttcaaacatgcatgtacaccaaaagtgtctttatatatgtcatgaaacaattcccaagttttcaaaaatatattgtatttgttttcagtgatagttatttctttgtatgttttatataaaagttgaagtctgagctggagtgttttaaaatttaaataagttttgtgcatctacaatagtatatgtaatattttgtctctaactgaatgagctagattattttatttatattcttatcatacattaaaaaaaaaaggtcttgttcttatcgaaataggatatttttatggacatccggtcttgcaaaatgtgtaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACAAACTGAAA---ATTGTA------TGATTGAAATTGT-AT--GTTCTCA---CTTTCATTCAATATT---CACAC-TTGCTTTCATGCACTGTTAAAACTGGTAGTTAAACCTAGTATATATTATATTGTAATTATTATCCTTTATACAATAATGTTTCTGGGTGATAACT--------------GAAAA-A-----A------------GGG--------GAGGTGGGGGAATAAGG----------G-ATAAAGGAGG-GG-GTTCCCT-----G-GC--TTG----AAGCTTTTG------------TTTTA-AAACATGCACGTTCATCAAAAGTGTC-TTATATACAAAACTAAGTAAGTAC-GTCATGAAACAATTTCCA--AG---------ATA--TA-TATATTTGATTGAAACC-ACTGTGAT-G--TTGTATCTTTGTATtgaagcttattatttgcttttattattattttttttttttaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtatatagttttcaattcttgaatagaatataaatgtccgtcatcttttgtaatgtcgttgatcaaatgtattcccttttc
gi|11 : TTTTTATTTATTTATTTATTT---TTTT--GGTGTTTT---T------TTTTCG-GTTTCAGATTCCAAAGACGAGTCCCGCTT-ATTCTCCCCGTCTTATGCTGTATGAGGGGTCGATGAGGAACA-TCCCCTCATACAGCTTACA-ATAA-GTGCACATATAAAAGAGAA---ATAGTA-----TTGATTGAAATTGT-ATTTGTTCTCA---CTTTCATTCAATATT---TACATACTGCTTTCATGCACTGATTAAACTGGTAATTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACA
gi|12 : A-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACAAATTGCTTCCATGCACTGTTAAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATGTGGGAGATAACT--------------GAAGA-A-----A------------AGG--------G--------------GG----------G-ATAAGGGAGG-GG-GTTCTCT-----G-AC--TTG----AAGCTTTT-------------TTTTC-AAACATGCACGTACATCAAAAGTGTCTTTATATATAAAACTAACTAAGTAT-GCCATGAAACAATTCACA--Atcaaaagtgtc
gi|13 : ACATCAAAAGTGTCTTTATATACAAAACTAAGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--TATTGTATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTTGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTTTTATCATACAT
gi|14 : A-GTGCACATATAAAAGAGAA---ATAATATTCT-ATGATTGAAATTGT-ATAGGTTCTCA---CTTTCATTCAATAAT---GACACACTGCTTTCATGCACCGTTTGAACTGATAATTATACCTA------------TTGTAATTATTATCCTTTATACAAAAATGTATCTGGGAGATAACT--------------GAAAA-A----AA------------GGG--------G--------------GGAGGTGGACAAA-ATAAGGGAGG-GG-GTTATCT-----G-
gi|15 : GTT-GTTGTTTTTTTTGTACTGTTCTGTGCTTCAAATGGACAGTTTTC-TATTTTAGACTCCATA-TGGAGTCCCACTT-ATTCTCCACATCTCATTCTGTATGAATGATAGAAGAGAAACA-TCCCC-CATACAACATACA-AT---------GTATAAAAGAGGA---ATA
gi|17 : CGTTCCATACTCTAT-GTGGAGTC--ATTTCATTTCCCCCGTCTCATGCTGCATTAAAGATCAAGGAGTAACA-TCCCCTCATACAGCTTACAGACAATTTAAACATAT--ATGAGGA---ATa
gi|18 : tTTT-ATTTTCCCCGTCATATGGTGGGACAGGGGTCAGGGAAGACCA-TCCACTGTCACACCTTACA-TCA---TATACA-ATAATAGA
gi|19 : g-ATTCTCCCCGTCTCATGCTGTATGAGGAGTTGAGGAGGAACA-CCCTCTCATGCACCTTACA-ATAA-GTGCACATATAAGAGAGAA---ATcttatatatatattca
gi|2 : TTTTTGTT-GTTGTTTTTTTT---TTTTT-GGTGTTTT---T------TT---GCGTTTCAGACTCCAAAGTGGATTCTCATTT-ATTTTCCCCGTCTCATGCTTTATGAGGGGTCAAGGAGGAACA-TCCCCTTATACAGCTTACA-CTAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATTATTGAAATTGT-ATATATTCTGA---CTTTCATTCAATATT---CACACATTGCTTTCATGCACTGTTTAAACTGGTAGTTTTACCTAGTAAATATTATATTGCAATTACAATCCTTTATACAATAATGTATCTGGGAGATATCT--------------GAAAA-A----GA------------GGG--------G--------------A-------------ATAAGGGAGG-GG-GGTCTCT-----G-GC--TTG----AAGCTTTTG------------TTTTC-AAACATGCACATACATCAAACGTGTCTTTATATACAAAACTAAGTAAGTAT-GTAATGAAACAATTCCCA--AGTTTTCGAAAACA--TATTGTATTTGTTT----TC-T--GTGATAG--ATATTTCTTTGTATGTTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTGTCTGAATGAGCTGGATTATTTTATATATATTCTCATCATACATTCCAAACATAAATGATTTTTGTTCTTATGGAAATGGGATATATTTTATGGACATCCAGTCTTGCAAAATATGTAGTATTTTTTGTGT-TTCTTTACATTCACACAAT-AATGATAGATTGTCTCGGTGGTATATGAGCAAAATGAACACAGTGGACTATCCAGTCGTTTTATCTTATGTAGAAAATCGTTTGTTGCCAGTATATTATGATTGATCCGTGACTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAAGATAGCCATG-AAAACACTGTTTTCCAAATTG-CTTCGTCAAAAC--T-----------------ATGTTTTT--CCACTTGGAATTTCATTGCTATGATTCAATATAAGATACATATCTTGAATACCTTTTTTTCTTTTTCATGTATATTTTGATAGGGTTAGGTATGACCGAACTT
gi|20 : tATTT-ATTCCCTTCGTC-------GTATGAAATGTCAAGGA-GAACGTTCTCTTTATACAACTTTCA-A
gi|3 : cttAA-GTGCACATATAATAGAGAA---ATAGTA-----ATGACTGAAATTGT-ATATGTTCTCA---CTTTCATTCAATATT---CACACACTGCTTTCATGCACTGTTTAAACTGGTAGTTAAACCTAGTAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGA--ACT--------------GAAAA-A----GGAGGGT-------GGG--------G--------------GG----------GCGTAAGGGATG-GG-GTTTTCT-----G-GC--TTG----AAGCTTTTG------------TTTTT-AAACATGCACGTACATCAAAAGTGTCTTTATACA----ACTATGTAAGTAT-GTCATGAAACAATTCCCA--AGTTTTCAAAAACA--AATTGTATTTGTTT----TC-A--GTGATAT--ATATTTCTTTGTATATTTTATATAAAAGTTGAAGTCTGAGCTGGAGTGTTTTAAAATTTAAATTATTTTTCGAGCATCTACAACAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATGATTTTACTTATATTCTTATCATACATTCCAAAAATAAATGATTTTTGTTCTTATGGAAATGGGATATTTTTTATTGACATCCAGTCTT-CAATTTGTGTAGTATTTTTTGTGC-TTCTTTACATTCCCACAATAAATGATAGATTGTCTCGGTGGTAGATGAGCAAAATGAACACAGTTGACTATCCAGTAGTTTTATCTTATGTAAAAAATTATTTGTTGCCAGTATATTATGATTGATCCGTGATTGAAACCACTGTAATGTTGTATTTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAGTTGTTTTTGTCAAAATTATAT--GTTTTATTCCATGATGTTTTT--CCACTAGGAATTTCATTGTTATGATTCAATATAAGATACAT-------ATACA-TATTCTCTTTTTCATGTATATTTTGATATGGTTAGGTATGATCGGACTTa
gi|4 : GTCTCATTT-ATTCTCCCCGTCTCATGCTGTATGAGGGATCAATGAGAAACG-TCACCTCATATAGCTTACA-Atgaagcttattacatgtatttgcttttattatttttttcatttttttaaaattttgaattgcagtaatgatactgtggtattgtagaaagtttatattaatactgtagtctat
gi|4 : TCTCAATATTTTCGTTCAATATTACACACACATCGCTTTCATGCGCTGATTAAACTAGTAATTAAACCTAATAAATATTATATTGTAGTTATTATCCTTTATACTGTAAAATATCTGGGAGAAAACA--------------GAAAA-A-----A------------GGGAAGAAAAAG--------------AA----------A-ATAAGAGAGT-GG-GTTCTCT-----G-GC--TTG----AAGCTTTTGTTCTTCTTTTGATTTTT-AAATATGCATGTTCATTAGAA--------ACA---AAAACTAAGTAAGTAT-GTCATATAAGAATTCCCA--TGTTTTCAAAAGTA--TATTGTATTTGTTT----TTAA--GTAAAAG--ATATTTCTTCGTACGTC-------GAAGTTGAAGTCTGAGCTGGAGTG---------------TATTTTTCGAGCATC-----TAGTATATA--TA----ACTGTATGCCTCTAACTGGATGAACTTGATTATTTTACTAATATTTTTATCATATATTCCAAAATTAAATGAGGTTACATCTAACGAAAATGGGATGCTTTTGATGGACATCCAGTCTTGCAAAATGTGTAGTA-----TGTGTGTTGTTCACATTCCCACAATAAATGATAGATCGTTT-----GTAGTTAAGCTAAATGAGTACAGTTGACTcgtctcaatattttcgttcaatattacacacacatcgctttcatgcgctgattaaactagtaattaaacctaataaatattatattgtagttattatcctttatactgtaaaatatctgggagaaaacagaaaaaagggaagaaaaagaaaataagagagtgggttctctggcttgaagcttttgttcttcttttgatttttaaatatgcatgttcattagaaacaaaaactaagtaagtatgtcatataagaattcccatgttttcaaaagtatattgtatttgtttttaagtaaaagatatttcttcgtacgtcgaagttgaagtctgagctggagtgtatttttcgagcatctagtatatataactgtatgcctctaactggatgaacttgattattttactaatatttttatcatatattccaaaattaaatgaggttacatctaacgaaaatgggatgcttttgatggacatccagtcttgcaaaatgtgtagtatgtgtgttgttcacattcccacaataaatgatagatcgtttgtagttaagctaaatgagtacagttgact
gi|5 : gtctcatttattctccccgtctcatgctgtatgagggatcaatgagaaacgtcacctcatatagcttacaacgTTTGTTCTAATGGAAATGGGATATTTTTTATGGACATCCAGTCTTGCAAAATGTGTAGTATTTTTTGTGT-TTCTTTACATTCCCACAATAAATGATAGATTGTTTCGGTGATAGATGAGCAAAATGAACACAGTGGACTTTCGAGTAGTTTTATCTTATGTAGAACAGTGTTTGTTGCCAGTATATTATGACTGATCTGTGATTGAAACCACTGTAATGTTGTATCTTTTGTTATCAAATATGGCCATG-AAAACACTGTTTTCCAAATGG-CTTTGTCAAAAT--TAT--GTTTTATTCCATGATGTTTTT--CCACTAGGAATTTCATTGTTATGATTCAATATAAGATACATATCTTGAATAGC-TTTTTTCCTTTTCAGGTATATTTTGATAGGGTTAGGTAAAATCGGACTT
gi|6 : TATATTC--GTCATATATTCAAAAGATG--TG--TTTTGTTGTAATGGAAATGGGATAATTTATGTTGACATTCAGACTTCTCAAATATGTAATATTGTTTGTGT-TTGTTCACATTCCCATTATAAATACAAGATCGCCTCAGTGGAAGATGAGCAGAAAAAACCCGGT--ACTTTT---TTTTTTTATCTTTTACAGAAAATTGATTGTTCCCAAT------------------------AACTACTGCCGTATTGTTTCTTTTGTTATTAAATATGAACACGCAAAGCCATGGTTGCCAAATTG-CTTTATCAAACT--GAT--GTTTTATTCCATTATA-TTTT--CCGCTAGAAATTTCATTGTCA-GTTTCAAAATAATATAtgaagcttattatttgcttttattatttttttctttttttttttaaattttgaattgcagtgatgatactgtggtattgtagaaagtttatattaatactgtatatagtttttaattcttgaagagaatataaat
gi|7 : tatatatatataAA-GTGCACATATAAAAGAGAA---ATAGTA-----ATGATTGAAATTGT-CTATGTTCTCG---CTTTCATTCAATATT---CAAACATTGCTTTCCTGCACTGTTTAAACGGGTAGTTAAACCTAATAAATATTATATTGTAATTACTATCCTTTATACAATAATGTATCTGGGAGATAAATTAATGATAGTGAATGGAAA-ACCACGG------------GGGTGGGGAT-G--------------GG----------G-GTAAGGGAGGTGG-GTTCTCT-----G-GC--TTA----AAGCTTTTG------------TTTTC-AAACATGCGCGTACATCAAAAGTGTCTTTATGTACAAAACTTAGTAAGT--------------------------TTTAAAAACCA--TATTGCATTTGTTT----TC-A--GTGATAG--ATATTTCTTTGTATGTTTTATGTAAAAGTTTAAGTCTGATCTGGAGTGTTTTAAAATGCAAATTATTTTTCGAGCATCTACAATAGTATATG--TA----ATATTTTGTCTCTAACTGAATGAGCTGGATTATTTTACTTATATTCTTATCAttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatttcatgtatatttaaaaatgggttggttatgacagaactttgcagtatattattttctttaattactgcttctatttattaaaacaggtatagtgacttaatgaccgtgattatactggtggt
gi|8 : TGCAAATATATAAAAGGATTTACAGTATTATAATGGCTATAACCATTATATGGTCTCA---CTT-CA---AAGGGC---TAAAAAAAGTTCTCTTGCACAGTTTAAACTA-CA--TAAACCTATT---TTTTATACTATAACAAATATCTTCTTTACAACATTCGACATAGGAAATAACC--------------GAAAATC----GA------------GGATATACTC-G--------------TA----------A-ATA-GGGAGG-ATTGTCCTCTTACATGTGCCCTTGTTCTAA--TTTTG------------TTTTTTAAACATGTA---AT-TTATAATTTTCTTTATAC-CA---TTAAGTA--TATCGTCA----ACCATTTCCATTA-TTTTCAAGAACACGTATT--ATTCGTTT----TC-A--GT-ACAGTAATATTTC--GGTATGTTTT-TATAAAATTT------TGAGCTGCAG-GGTTTAAAACGTTCAT--TTTTTTGAGCATCTACAATAATATATAATTATAGTACATGCAGTTTCTAATTGGATGAaa
gi|9 : atTGATTGAAACCACTGTGATGTTGTATCTTT-GT-ATCAAATATGGCCATG-AAAACACTGTTTT----ATTC-C--------------AT--G------------ATGTATTT--CCACTAAGAGTTTCATTGTTATGATTCAAAATAAAATACATATCTTGAATACC-TTTTTTCTTGTTCATGTGTATTTTGATAGGGTTAGGTATGATCGGACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGTTGTTCTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTAATA