lowQualScore : 111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 111111 1111111 999999999999999999999999 11111111111111 1 2222 2222222222 11111 222222222222 000000000000000000000000 222222 11111111 1 111111111111111 33333 2 111 1111 55555555555555555555555555555555555555555555555555555555555555 1 1 666666666666666 1 1 222222222 1 11111 11 5555555555555555555 2222222 1 1
lowQualScore : 1 11111 55 111111 8 6666666 000000000000000000000000 99999999999999 555 1 8 44 3 0000 44 6 555 88888 3 555 0000000000 55 55 11111 88 3 6 000000000000 0 4 4 88 2 444444444444444444444444 5 888 333333 2 77777777 6 66 88 8 5 99 5 999999999999999 3 33 1 4 8 0 99999 7 6 4 0 3 7 4 66 333 2 0000 999 33333333333333333333333333333333333333333333333333333333333333 1 555 2 66 1 222222222222222 0 99 5 1 4 6 999999999 5 11111 11 4 2 99 0 5 66 1 1111111111111111111 22 6666666 2 6 7 4 2
lowQualScore : . ..... .. ...... . ....... ........................ .............. ... . . .. . .... .. . ... ..... . ... .......... .. .. ..... .. . . ............ . . . .. . ........................ . ... ...... . ........ . .. .. . . .. . ............... . .. . . . . ..... . . . . . . . .. ... . .... ... .............................................................. . ... . .. . ............... . .. . . . . ......... . ..... .. . . .. . . .. . ................... .. ....... . . . . .
lowQualScore : 4 22222 22 555555 2 0000000 555555555555555555555555 66666666666666 888 5 8 66 3 1111 66 7 888 33333 3 888 3333333333 00 00 88888 55 3 9 555555555555 5 5 5 55 6 444444444444444444444444 2 888 222222 2 22222222 9 99 66 1 0 11 0 444444444444444 7 22 0 4 3 1 33333 2 5 0 1 2 8 4 11 555 0 6666 222 11111111111111111111111111111111111111111111111111111111111111 9 444 8 99 4 222222222222222 2 66 0 2 4 3 222222222 2 11111 99 4 5 55 2 0 99 8 4444444444444444444 11 8888888 2 7 0 4 2
consensus : AGTAATGTGGGGGAATATCGG-ACACC-TGG------GGTTTTC------CGGACGATTT---G---AAAATG-----------TTTGC--------------AG---CTTTCTGCATGTAC--TA-CATT--TGT--T-TTCAGA---CCCTATC-----AAA-GC---A---GCCGG-TAC--ATTAACAC--ATCCCGG----GTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAATTTTGATTGGAAGAGAGCGGTTCGCGTAAACAA--T--------AT----------GTGTTCGCCCAGA---TA-----GAGCTGGCG----ACAATTTTTTATATCGCA--TTTTCAACAC-GAAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGC--G-TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAATTT-AAATGAAAATAAAAG-TGTCCGATAAACC--CCTGATGAATAATTCAATAAGCTGTCCG----ATGAACCCCNCATGAG-----------------ATT-TT-------------AA---C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATA--CT---CCCCATGCAGTGNNGTACTT-AGAAAAACAGTT-GACTGGTA-------C-GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTCG-G--ACATGAACAT---A-C------TAT----CGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
Reference ( gi|2 ) : AGTAATGTGGGGGAATAGCTG-ACACC-CGG------GGTTTTC------TGGACAATTT---G---A----------------TTTGC--------------AG---CTTTCTGCATGAAC--TA-CATT--T-T--T-TTCAGA---CCCTATC-----AAA-GC---A---GCCAA-TAC--ATTAACAC--ATCCCGG----GTAACATATGGGTGTTTATGCACCGTGACGACAT------------GTGACAACAATTTTGATTGGAAGAAAGCGATTTATGTAAACAA-----------AT----------GTGTTCGCCCAAA---TC-----GAGCTGGTG----ACATTTTTTTATATTGCA--TTTTCAACAC-AAAACAGCAAGGTT-AAAATGGTT-TTACAGTTATTGATTTTGC--A-TTTATTTGATGAAATAAATT-GTGTTGAATATGAAATTGAAACAAATATATATGCTTTTTTTTTTATCATAAACAATAATTTTAAATGAAAATAAAAG-TGTCTGATAAACC--CCTGACGAATAATTCAATAAGCTGTCTG----ATGAACCCCACATGAG-----------------A---TC-------------AA---C-----------C--------CCATTTGGTTGTCTAATAAACCACAC--AAAACGTCC--TA--CT---CAAAATGTGGTGGTGTACTT-AGAAAAACAGAT-GATTGGTA-------A-GTGTTTTTCT-----AGTTTTACACCAT-TTGACCACCACATCTTCTCG-G--ACATAAACAT---A--------CAT----CGGAAATACAAGT-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACAGACACAATTCCTTAGGTGTCCAATATTCCCC
gi|6 : AGTAATGTTGGG-AATATCGG-ACACC-CGA------G-TTTTC------CGGACAATTT---G---AAAATGTGCTA------TTTGC--------------AG---CTATCTGCATGTAC--TA-CATT--TGT--T-TTCAGA---CCATATC-----AAA-CC---A---GCCAG-AAT--ATTAACAC--ATCCTAG----GTAACATAGGGGTGTTTATGCACCATAATG----------------------ACAATTTTGATTGGAAGAGAGCGGTTTGTGTAAACAAGTTTTTCTCTCAC----------ATGTTCGCCCAGA---TA-----GAGATGGCA----ATATTTTTTTATATAGCA--TTTTCAACAT-GAAACAGAAAGGTT-GAACTTGTT-TTACAGTTATCAGTTTTGC--A-TTAATTTGAAGAAATAAATT-GTGTTGAATAAG-AATTGAAACAA--ATGTATGC-TTTATTTTTGTTATAAACAATGA-TTTAAATGAAAATAAAA---GTCCATTAAACC--TCTGATGAATAATTCAATGAGCTGTCTG----ATGAACCCCACATGA----------------------------------------------------------------CATTTCAATGTCTGATAAACCGCAC--AAAACATCCGATA--CT---CCTAATGC-ATGCTGTACTT-TGAAAAACAGAT-GAGTTGTA-------T-GTGTTGTTCT-----AGTTTCACGCTAT-TTGATCAACACAACTTCTCG-G--ACATAAACATTAAA--------CAT----
gi|5 : AGTCATGTTGGGGAATA--T---CACC-TGG------GGTTTTC------CGAACGATTT---G---AAAATGTGCTT------TTTGC--------------AG---CTCTTTGCATGTAC--TA-CATTAGT-T--T-TT-AGA---CCCTATC-----ATA-GC---A---ACAGG-TAC--AGTAACAC--ATCCCGG----ATAACAT--GGGTGTTTATGTACTGTGACGATAT------------GTGATAACAATTTTGATTCGAAGAGGGCAGTTCGTGTTAACAACCTCCCTCTC-GC----------TTGTTCGCTCAGA---TA-----CA-CTGGCT----A----TTTTTATATCGCA--TTTTCAACAC-GAAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTATGCGGA-TTTTTTTTACATAATAAATT-GTGTTGAATATGAAATTGAAACAAATGTAT--GCTTTATTTT--ATTATAAACAATCATTT-AAATGAAAATAAAAG-TGTCCAATAAACC--CCTGTTGAATAATTCAATAAGCTGTCCG----ATGAACCCCTAATGAG-----------------ATT-TC-------------AATGTC-----------CGATAAACGCCATTTTGTTGTCCAACAAACCCCAC--AAAACGTCCAATA--CT---CCCGATATAGTGTAGTACTT-ATAAAAACAGTT-GACTTGTA-------T-GTG---ATCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTCG-G--ACATTAACAT---ATC------TAT----CGAAAATATAatctatcta
gi|1 : gAGTAATTTAGGCATATATCAG-ACACC-TGATGTCATGGTTTTC------TGGACGATTT---G---AAAATGTGCTA------TTTGC--------------AG---CTTCCTGCATCTAG--TA-CATT--TGT--T-TTCAGA---CCCTATC-----AAA-GC---A---GCGGA-TAC--GT-AACAC--ATCCTGG----ATAATATACAGGTGTTTATGTACTGTGACAATAT------------GTGATGACAATTTTGATTGGAAGAGAACGGCTCTGGTAAACAA-----------GTTTCATCTCACATGGTCGCTAAGA---TA-----GCACTGGCG----ACAATTTTTTAAATCGCA--TTTTCAACAT-GAAACAGAAATGTT-AAACTGGTT-TTACAGTTACCGATTTT-C--AGTTTATTTGATAAAATAAATTAATGTTGAATAAGAAATTGAAACGAATATA-ATG--TTTTATTATATTATG---AATAATTC--AAT--------AAGCTGTCTGATGAACCAACATGA--GAT--TTCAA-----TGTCCG----AT------------AG-----------------A---T-------------------------------C--------CTACTTTGTTGTCCATTAAACCCCAC--ACAACGTCTGATA--CTCCCCAA---GTAGTGCAGTATTT-CGTAAAA-AAATCGACTGGTA-------A-GTGTTGTTCT-----AGTTTCACGCAAT-TGGACCA--ACA-CTTCTTG-G--TCACGAACAT---AATATTATCTAT----CAAAAATACAAGA-GTT-TATCTGATTTTCATAGCATTTG-GCTAAGCAAGACATACACAAATCTTAAGGTGTCcgagtctgaat
gi|4 : AGTTATACGGGGGAATATTGG-ACACC-TGG------GGCTTTCCATACTTTGAAAATAT---GCT-A----------------TTTGC--------------AG---TTTTCTGCATGCAC--TA-CATT--TGT--T-TTCAGA---CCCTAT------AAA-GC---A---GCAGT-TAC--AGAAACAC--ATCCCGG----ATAACATTCAAATGTTTATGTACTGAGAGGATAT------------GTGATGACAATTTTGATTGCAAGAGAGCAGTTTGTGTAAACAA-----------ATTACCTTTCACATGTTCGCTCAGA---TA-----GCGCTGGCA----ACAACATTTTTTATCGCA--TTTTCAATAC-AAAACAGAAAGGTT-AAACTCGTT-TTGCAGTTAACGATTTTGC--G-TTTATGTGACAAAATAAATT-GTGTTGAATGAGAAATTGAATCAAATATATG----TTTTATATTATTATAAACAATAATTT-------AAATAAAAG-TA--CGATAAACC--CCTGTTGAATAATTCAATAAACTGTCTG----ATGAACCTCACATAAG-----------------ATT-TT-------------AA---TATCCGTTAAGAC--------CCATTTTGTTGTCCGTTAAACCCCAC--AAAA-GTCT--GATTCT---CCCCATGTATTGCAGTACTTGAAAAAAACAGTT-GATTGATA-------C-AAGTTGTTCTATCCAAATTTCATAACAC-GTGGCCAggttattactgattaccccatattact
gi|9 : aaAGTAATGTGGGGGAATATCTA-ACACC-TTG------G-TTTTC------AGGACGATTT---G---AAAATGTGTTA------TTTGC--------------AG---CTTTCTGCATGTAC--TA-CATT--TGT--T-TTCAGA---TCCTACC------AA-GC---A---GCGGG-TAC--AGTAACAC--ATCCCAG----ATAACATACGGGTGATTAAGTACCATGTCAATAT------------GAGATGACAATTTTGATTGGAAGAGAGCAGTTCATGTTAACAA-----------GT-----------TTTTCTCTCACATGTTCCCTCAGCGCTGGCG----ATAATTTTTTATATCGCA--TTTTCAACAA-TAAACAGAATGGTT-TATCTGGTTGTTACAGTTACCAATTTTG-------TGTTGGATGAAATAAATT-GTGTTGACTAAGAAAGTGGAACAAATATagcaagacggacacaaatcgtaaggtggcagatattctcccatatattactctagtgttcacatga
gi|8 : tagAGTAATATGGGGGAATATCGG-ACATCATAG------GATTT
gi|12 : cgttattttattataaacaataatttaaatgaaaataaatgtatctgataagctcctgataactaattaagctgtctgtcagatgaactgagcatgagatttccatgtcttatgaaccccattttgttgtccaataaaccccacaaaacatccattacctcccatgcagaggtgtacttagaaaaacagttgagtggtacattttgttctagttttatgccattttaccaccacaatttctaggatatataaacaaaattatggcaaatacaaaagtttatccaaatttcattatatttgcacctcaagacggacacAGTATTATGTGAGAAGATCGG-ATGCT-CGG------GGTTTTC------CGGATGATTT---G---AAAATACTAGTATGCTATTTAC--------------AG---CATTCTGCATGTACCTTATCATC--C-T--T-ATCAGA---CCTTATC-----AAA-GC---A---GACAA-TAA--ATTACCAC--ATTCCGG----GTAACATACTGTTGTTTATGCACCGTGATGATATATATATATACCGGTAATATCAATTTTGATTGGAAGAAGTTGGTTCACATGAACAA-----------GT----------ctaattatatgttaataatttctttgagaa
gi|17 : AGTAATACGCGAGAATATCAG-ACACA-TAC------G--TTTC------TGGACAATTT---GGAAA----------------TATGCTGTTTATAAATTATAG---TGTTCTATGTGTAA--TA-CACT--T-TGTT-TTCAGA---CCCTATC-----AAA-GC---A---GATGA-CAC--ATTTACtccctc
gi|18 : gAGTAATTTGGGGGAATA-TTG-------TAA------GATTT----------GAAAATGT---GCT-A----------------TTGAC--------------AG---CATTCTGCATGTAC--TT-CATT--TGT--T-TTCTGA---CCCCATT-----AAA-GC---A---
gi|3 : agTAATGTGGGGAAAT-GTTGGACACC-CGG------GGTTTTC------CGGACA-----------A----------------TTTGA--------------AA---------ACGTG--C--TA---------T--T-TGCAGATATCCCTATCTGAGTAAACGC---ACGAGGGAA-AACTTATTTACACGAACCGCTGTCTTGCAAAA-----ATGTTTA----CCGTAACGATAT------------GTGACATCAATTTTGATTGGAAGAGAGCGGTTCTTGTAAACAAGTTTCCCCTC-AT----------GTGTTCGCCCTGA---TT-----GAGCCGACG----GCAATTTTTTATATCTCA--TTTTCAATAC-GACACAG--AGA--------GGTT-TAACAGTTATCG------------TT-TTTGATGAAATTAATT-GTGTTGAATAAGAAAGTGAATCAAATATAT----TCTTTATCTTATCATAAACAATAATTT-AAATGAAAATAAAAG-TGTTTGATAAACC--CCTGATTAACAATTCAATAAGCTATCCA----ATGAA-CCCACATGAGTTTTCAATGGATGTCCAA---TA-------------AA---C-----------C--------TCATTTTATTGTCTGATAAACCCCACCAAAAATGTCTGATA--CT---CTCCATGCAGTGGTGTACTT-AGAAAAACAGTT-GACTGGTA-------T-GTGTTATTTT-----AGTTTT-TGTCAT-TTGACCAAAACAACTTCTTA-G--ACATGAACAC---ATC------TAT----CAGAAATACAA------------GAGTTTCATAACATTTG-GCTAAGAATGACAGACACAAATCCTGAGGTGTCCGATATTCCCC
gi|14 : GGACAATTTCAAA---A----------------TGTGC--------------TATTTCTTTCTGCAAGTAC--TA-CATT--T-G--TATTCAGA---CTCTATT-----AAA-GC---A---------------TTAACAC--ATCCCGG-----TAACATACGGGTGTTTATGCACCGTGACcata
gi|7 : aatggggaacatgggatatccagggtgggggg----------------TTTAC--------------AG---CATTCTGCATGTAC--TA-CACT--TAT--T-TTCATA---CCTTATT-----GAA-GCTGAA---GATAGGTAC--GTTAGCAC--ATCCTAG----A-AACATGTTGTTTTTTTTTTACCGTGACTATAC------------ATGACAGCCCTTTTGATTGGAAGAGAATAGTTTACATAAACAAGTTTCCTTTC-AC----------GTTTTCACCAAGA---TA-----GAGCTGGTGCAAAAAA----TTTATATAGCA--TATTCAACATGAAAATAGAAAGGTT-AAAA-AGTA-TTAAGGTT-TAGATTTAGC--A-TTTATTTGATAAAATGAATT-CTGTTGAATATGAAATTGAAAC----ATATATGA--TTTATTTTATTATACACAACAA-TTTAAAGGAAAATAAAAG-TGTCCGATAAACC--CCTGagttgactggtatcaaggg
gi|11 : aaataaagtagacgaaaccacatgtggcttactatataaaatatgctt----------------TTTGC--------------AG---CTTTTTGCATGTAC--TA-CATT--C-G--TATTCAGA---ACCTATC-----AAT-GA---A---GCCA--------TTAACTC--ATCCCAG----TTAACATACGGGTGT------ACCCTAGCAATAT------------GTGACAACAATTTTATTTGGAAGAGAACAAGTTTCCT---CTT-----------AT----------GCGATCGCCCAAA---TA-----CAGCTGATG----ACAATTTTTTATATTACAATTTTTTAATGC-GAAACAAAAAGGTTAAAAATGGTT-TTACAGTT--------------------------AAAT----T-GTGTTGAATATGGAATTGAAACctttgaattactaaacagtgattgaaattcctaaccataattttaat
gi|15 : atttgaaaatgtgctAGCAC--ATCATAT----GAAATATACGAGTGTTTATATAACATGACAATAT------------ATGGCGGCAA-TTTGATTTGAAGAGAGCAGTTT---CACACAA-----------AT----------AAGTT
gi|10 : ataatacgcaaggataaacTTGC--G-TTTATTTGACAAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATGTAT--GCTTAATTTT--GTTATAAACAATAATTT-AAATGAAAATAA--G-TGTCCTATAAACC--CCTGATGAATAATTCAATAAGCTGTCTG----ATGAACCGCTCATGAG-----------------A---TTTCAATGTCCAGTAAA---C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCAGATA--CT---TCCCATGTAGTGTAGTACTT-AGAAAAACAGTT-GACTGGTA-------C-GTGTTGTTCT-----AATTTCACACCAT-TTGACCACAAC---TTCTCAAG--ACATGAACAT---A-----------------------------------TCTGAA-------ACATTTG-GCGAAGCAAGATAattattcaaattttcaatgagacatctggctggtgacgaatatttaaa
gi|8 : TTATTTTATTATAAACAATAATTT-AAATGAAAATAAATG-TATCTGATAAGCT--CCTGATAACTAATT----AAGCTGTCTGTCAGATGAACTGAGCATGAG-----------------A---TTTCCATGTCTTATGAA---C-----------C--------CCATTTTGTTGTCCAATAAACCCCAC--AAAACATCCATTA--CC---TCCCATGCAGAGGTGTACTT-AGAAAAACAGTT-GAGTGGTA-------C-ATTTTGTTCT-----AGTTTTATGCCAT-TTTACCACCACAATTTCTAG-GATATATAAACAA---AAT------TAT----GGCAAATACAAAA-GTT-TATCCAAATTTCATTATATTTGCACC--TCAAGACGGACACAAATCCTATGATGTCCGATATTCCCCttcccccatattactc
gi|13 : cgATAAAAG-AAACTGA--AACT--CATGTC-AGTAATTCAACAAACTGTCTG----ATGAACCC--CACAAG-----------------ATTTTC-------------AG---G-----------G--------CC----GGT----------ACAGGAC--AGA---TTC--TC--CC---CCA--TGCAATGGTGTACAT-AGAAAAACAATT-GACTAACA-------C-ATATTGTTCT-----CTTTTTA-ACCATATTTACCACCAAAACTTCTCA-G--ACATGAACAC---A--------GATCTAACAGAAATAGAAcatattactctaattatatgttaataatttctttgagaa
gi|16 : CAGTT-GACTGGTATCAAGGGATGTGTTGTTTT-----AGTTTTACGACAT-TGGACCACC-----TT----------AAAAATAT---C--------TGT----CGGAAATACAGGA-GTT-TATCTAAATTTCATAACATTTG-GCCAAGCAAGCCAGACACAAATCCTcagatctaacaga
gi|4 : ATACAAGTTGTTCTATCCAAATTTCATAACACGTG-GCCAAGCAAGACGGACACAAATCGTAAGGTGGCAGATATTCTCC
gi|4 : aaagttatacgggggaatattggacacctggggctttccatactttgaaaatatgctatttgcagttttctgcatgcactacatttgttttcagaccctataaagcagcagttacagaaacacatcccggataacattcaaatgtttatgtactgagaggatatgtgatgacaattttgattgcaagagagcagtttgtgtaaacaaattacctttcacatgttcgctcagatagcgctggcaacaacattttttatcgcattttcaatacaaaacagaaaggttaaactcgttttgcagttaacgattttgcgtttatgtgacaaaataaattgtgttgaatgagaaattgaatcaaatatatgttttatattattataaacaataatttaaataaaagtacgataaacccctgttgaataattcaataaactgtctgatgaacctcacataagattttaatatccgttaagacccattttgttgtccgttaaaccccacaaaagtctgattctccccatgtattgcagtacttgaaaaaaacagttgattgCCCCAGGTGTCCAATATTCCCCcatatattactctagtgttcacatga
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): CTTGGAGGACAGGTTTGTTGCATAACTCTTTTGAGAA
Alignments
lowQualScore : 11111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 11111111111111 888888888888888888888888 1111 222222222222 11111111111111111111111 1111 1 1111111111111111111111111111111111111111111 111111111 11111 333333333
lowQualScore : 2 00000000000000 4 2 2 3 999999999999999999999999 3 44 3 3 555 4444 1 0 000000000000 555 44 3 55 0 66666666666666666666666 777 0 55 4 4 22 4 1 0 666 3 33 4 1 9999 0 4 4 55 999 1 0 9999 0 2 2222222222222222222222222222222222222222222 0 66 0 4 0 22 4 555555555 00000 4 1 4 66 4 777777777 5 5 2 6 0
lowQualScore : . .............. . . . . ........................ . .. . . ... .... . . ............ ... .. . .. . ....................... ... . .. . . .. . . . ... . .. . . .... . . . .. ... . . .... . . ........................................... . .. . . . .. . ......... ..... . . . .. . ......... . . . . .
lowQualScore : 0 33333333333333 6 3 9 1 111111111111111111111111 1 66 3 3 888 0000 8 4 444444444444 888 66 3 77 7 33333333333333333333333 000 7 55 4 4 00 4 9 8 222 3 55 0 4 2222 2 4 0 55 000 3 7 4444 1 6 6666666666666666666666666666666666666666666 8 11 9 4 1 00 4 999999999 00000 0 1 4 11 4 888888888 0 7 2 7 7
consensus : AGTAATGTGGGGGAATATCGGACACC-----CGG------GGTTTTCCGGACGATTTGAAA-ATG-----------TGCTAT-------TTG-CAGCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGC--GG-TTCGCGTAAACAAGTTTCCCCT-CAC-------G--TGTTCGCCCAGATAGAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACGAAA-CAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC----------------AA---C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
Reference ( family-1315 ) : AGTAATGTGGGGGAATATCGGACACC-----TGG------GGTTTTCCGGACGATTTGAAA-ATG-----------T------------TTG-CAGCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGC--GG-TTCGCGTAAACAA----------TAT-------G--TGTTCGCCCAGATAGAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACGAAA-CAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCNCATGAGATTTT----------------AA---C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
gi|1 : AGTAATTTAGGCATATATCAGACACC-----TGATGTCATGGTTTTCTGGACGATTTGAAA-ATG-----------TGCTAT-------TTG-CAGCTTCCTGCATCTAG--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCG-GATACGT-AACACATCCTGGATAATATACAGGTGTTTATGTACTGTGACAATAT------------GTGATGACAA---TTTTGATTGGAAGAGAAC--GG-CTCTGGTAAACAAGTTTCATCT-CAC-------A--TGGTCGCTAAGATAGCACTGGCG---ACAATTTTTTAAATCGCA--TTTTCAACATGAAA-CAGAAATGTT-AAACTGGTT-TTACAGTTACCGATTTTCAG--TTTATTTGATAAAATAAATTAATGTTGAATAAGAAATTGAAACGAATATA-ATG--TTTTATTATATTATG---AATAA-TTC-AAT--------AAGCTGTCTGATGAACCAACATGA----GAT--TTCAA-----TGTCCG----AT------------AGAT------------------------------------C--------CTACTTTGTTGTCCATTAAACCCCAC--ACAACGTCTGATACTCCCC-AAGTAGTGCAGTATTT-CGTAAAAAAATCGACTGGTAA--------GTGTTGTTCT-----AGTTTCACGCAAT-TGGACCA--AC-ACTTCTT-GG--TCACGAAC-ATAATATTATCTATCAAAAATACAAGA-GTT-TATCTGATTTTCATAGCATTTG-GCTAAGCAAGACATACACAAATCTTAAGGTGTCGGTTATT
gi|10 : TTGCG--TTTATTTGACAAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATGTAT--GCTTA--ATTTTGTTATAAACAATAA-TTTAAATGAAAATAA--G-TGTCCTATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCTG----ATGAACCGCTCATGAGATTTCAATGTCCAGTA-----AA---C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCAGATACTTCCC-ATGTAGTGTAGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AATTTCACACCAT-TTG---ACCACAACTTCTCAAG--ACATGAAC-A----------TATCTGAAACAactgattaccccatattact
gi|11 : ATTTGAAA-ATG-----------TGCTT--------TTG-CAGCTTTTTGCATGTAC--TA-CA-TTCGTATTCAGAACCTATCAATGA---AGC------CATTAACTCATCCCAGTTAACATACGGG------TGTACCCTAGCAATAT------------GTGACAACAA---TTTTATTTGGAAGAGAACAAGT-TTCCTCT----------------TAT-------G--CGATCGCCCAAATACAGCTGATG---ACAATTTTTTATATTACAATTTTTTAATGCGAAA-CAAAAAGGTTAAAAATGGTT-TTACAGTT-------------------------AAAT----T-GTGTTGAATATGGAATTGAAACtttggcgaagcaagatattcccccatattactc
gi|12 : AGTATTATGTGAGAAGATCGGATGCT-----CGG------GGTTTTCCGGATGATTTGAAA-ATACTAGTATGCTAT------------TTA-CAGCATTCTGCATGTACCTTATCA-TCC-TTATCAGACCTTATCAAAGC---AGAC-AATAAATTACCACATTCCGGGTAACATACTGTTGTTTATGCACCGTGATGATATATATATATACCGGTAATATCAA---TTTTGATTGGAAGAAGTT--GG-TTCACATGAACAA----------
gi|13 : ATAAAAG-AAACTGA--AACT--CATG---TCAGTAATTCAACAAACTGTCTG----ATGAACCCCACA--AGATTTT-------------------------------------------CA----G--GGCCGGTA-------C--AGGACA---GATTCTCCCCCATGCAATGGTGTACAT-AGAAAAACAATTGACTAACAC--------ATATTGTTCT-----CTTTTTA-ACCATATTTACCACCAAAACTTCTC-AG--ACATGAAC-ACAGAT----CTAACAGAAATAGAACA-Ggttccctc
gi|14 : GGGGAACATGGGATATCCAGGGTGG------GGGG----GGACAATTTCAAA-ATG-----------TG-----------CTA-TTTCTTTCTGCAAGTAC--TA-CA-TTTGTATTCAGACTCTATTAAAG-------------CATTAACACATCCC-GGTAACATACGGGTGTTTATGCACCGTGACatctaacaga
gi|15 : aatAGCACATCATATGAAATATACGAGTGTTTATATAACATGACAATAT------------ATGGCGGCAA----TTTGATTTGAAGAGAGC--AGTTTCACACAAATAAGT--------TAT----------TATTCagttgactggtatcaaggg
gi|16 : ataatacgcaaggataaacCAGTTGACTGGTATCAAGGGATGTGTTGTTTT-----AGTTTTACGACAT-TGGACCACCTTAA---------------AAAT-AT--------CTGTCGGAAATACAGGA-GTT-TATCTAAATTTCATAACATTTG-GCCAAGCAAGCCAGACACAAATCCTaaattttcaatgagacatctggctggtgacgaatatttaaa
gi|17 : AGTAATACGCGAGAATATCAGACACA-----TAC------G--TTTCTGGACAATTTGGAA-ATA-----------TGCTGTTTATAAATTA-TAGTGTTCTATGTGTAA--TA-CACTTTGTTTTCAGACCCTATCAAAGC---AGAT-GACACATTTAC
gi|18 : gAGTAATTTGGGGGAATATTGTA----------------------------A-GATTTGAAA-ATG-----------TGCTA--------TTGACAGCATTCTGCATGTAC--TT-CA-TTTGTTTTCTGACCCCATTAAAGC---A
gi|2 : agAGTAATGTGGGGGAATAGCTGACACC-----CGG------GGTTTTCTGGACAATTTGA-----------------T------------TTG-CAGCTTTCTGCATGAAC--TA-CA-TTT-TTTTCAGACCCTATCAAAGC---AGCC-AATACATTAACACATCCCGGGTAACATATGGGTGTTTATGCACCGTGACGACAT------------GTGACAACAA---TTTTGATTGGAAGAAAGC--GA-TTTATGTAAACAA-----------AT-------G--TGTTCGCCCAAATCGAGCTGGTG---ACATTTTTTTATATTGCA--TTTTCAACACAAAA-CAGCAAGGTT-AAAATGGTT-TTACAGTTATTGATTTTGCA--TTTATTTGATGAAATAAATT-GTGTTGAATATGAAATTGAAACAAATATATATGCTTTTTTTTTTATCATAAACAATAATTTTAAATGAAAATAAAAG-TGTCTGATAAACC--CCTGA--CGAATAATTCAATAAGCTGTCTG----ATGAACCCCACATGAGA--TC----------------AA---C-----------C--------CCATTTGGTTGTCTAATAAACCACAC--AAAACGTCC--TACTCAAA-ATGTGGTGGTGTACTT-AGAAAAACAGATGATTGGTAA--------GTGTTTTTCT-----AGTTTTACACCAT-TTGACCACCACATCTTCTC-GG--ACATAAAC-ATA-------C-ATCGGAAATACAAGT-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACAGACACAATTCCTTAGGTGTCCAATATTCCCC
gi|3 : TAATGTGGGGAAATGTTGGACACC-----CGG------GGTTTTCCGGACAATTTGAAA-ACGTGCTA------T------------TTG-CAG
gi|3 : ATATC-----------GTTACGGTAAACATTTT---TGCAAGACAGC--GG-TTCGTGTAAATAAGTTTTCCCT-CGT-------G--CGTTTACTCAGATAGGGATATCT---GCAA------ATAGCACG--TTTTCAAatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgtttaccgtaacgatatgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|3 : taatgtggggaaatgttggacacccggggttttccggacaatTACCGTAACGATAT------------GTGACATCAA---TTTTGATTGGAAGAGAGC--GG-TTCTTGTAAACAAGTTTCCCCT-CAT-------G--TGTTCGCCCTGATTGAGCCGACG---GCAATTTTTTATATCTCA--TTTTCAATACGACA-CAGAGAGGTT-TAAC----------AGTTATCG-----------TT-TTTGATGAAATTAATT-GTGTTGAATAAGAAAGTGAATCAAATATAT----TCTTTATCTTATCATAAACAATAA-TTTAAATGAAAATAAAAG-TGTTTGATAAACC--CCTGA--TTAACAATTCAATAAGCTATCCA----ATGAA-CCCACATGAG-TTTTCAATGGATGTCCAATAAA---C-----------C--------TCATTTTATTGTCTGATAAACCCCACCAAAAATGTCTGATACTCTCC-ATGCAGTGGTGTACTT-AGAAAAACAGTTGACTGGTAT--------GTGTTATTTT-----AGTTTT-TGTCAT-TTGACCAAAACAACTTCTT-AG--ACATGAAC-ACAT------CTATCAGAAATACAAGA-G-----------TTTCATAACATTTG-GCTAAGAATGACAGACACAAATCCTGAGGTGTCCGATATTCCCCgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|4 : taatgtggggaaatgttggacacccggggttttccggacaatttgaaaacgtgctatttgcagatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgttAGTTATACGGGGGAATATTGGACACC-----TGG------GGCTTTCCATAC--TTTGAAA-ATA-----------TGCTAT-------TTG-CAGTTTTCTGCATGCAC--TA-CA-TTTGTTTTCAGACCCTAT-AAAGC---AGCA-GTTACAGAAACACATCCCGGATAACATTCAAATGTTTATGTACTGAGAGGATAT------------GTGATGACAA---TTTTGATTGCAAGAGAGC--AG-TTTGTGTAAACAAATTACCTTT-CAC-------A--TGTTCGCTCAGATAGCGCTGGCA---ACAACATTTTTTATCGCA--TTTTCAATACAAAA-CAGAAAGGTT-AAACTCGTT-TTGCAGTTAACGATTTTGCG--TTTATGTGACAAAATAAATT-GTGTTGAATGAGAAATTGAATCAAATATATG----TTTTATATTATTATAAACAATAA-TTTAAATAAAAGTA---------CGATAAACC--CCTGT--TGAATAATTCAATAAACTGTCTG----ATGAACCTCACATAAGATTTT----------------AA---TATCCGTTAAGAC--------CCATTTTGTTGTCCGTTAAACCCCAC--AAAA-GTCTGATTCTCCCC-ATGTATTGCAGTACTTGAAAAAAACAGTTGATTGATAC--------AAGTTGTTCTATCCAAATTTCATAACAC-GTGGCCAcata
gi|4 : aaATACAAGTTGTTCTATCCAAATTTCATAACACGTG-GCCAAGCAAGACGGACACAAATCGTAAGGTGGCAGATATTCTCCagcaagacggacacaaatcgtaaggtggcagatattctcccatatattactctagtgttcacatga
gi|5 : aaagttatacgggggaatattggacacctggggctttccatactttgaaaatatgctatttgcagttttctgcatgcactacatttgttttcagaccctataaagcagcagttacagaaacacatcccggataacattcaaatgtttatgtactgagaggatatgtgatgacaattttgattgcaagagagcagtttgtgtaaacaaattacctttcacatgttcgctcagatagcgctggcaacaacattttttatcgcattttcaatacaaaacagaaaggttaaactcgttttgcagttaacgattttgcgtttatgtgacaaaataaattgtgttgaatgagaaattgaatcaaatatatgttttatattattataaacaataatttaaataaaagtacgataaacccctgttgaataattcaataaactgtctgatgaacctcacataagattttaatatccgttaagacccattttgttgtccgttaaaccccacaaaagtctgattctccccatgtattgcagtacttgaaaaaaacagttgattgAGTCATGTTGGGGAATATC----ACC-----TGG------GGTTTTCCGAACGATTTGAAA-ATG-----------TGCTTT-------TTG-CAGCTCTTTGCATGTAC--TA-CA-TTAGTTTTTAGACCCTATCATAGC---AACA-GGTACAGTAACACATCCCGGATAACAT--GGGTGTTTATGTACTGTGACGATAT------------GTGATAACAA---TTTTGATTCGAAGAGGGC--AG-TTCGTGTTAACAA----------CCTCCCTCTCGCTTGTTCGCTCAGATACA-CTGGCT---A----TTTTTATATCGCA--TTTTCAACACGAAA-CAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTATGCGGATTTTTTTTACATAATAAATT-GTGTTGAATATGAAATTGAAACAAATGTAT--GCTTT--ATTTTATTATAAACAATCA-TTTAAATGAAAATAAAAG-TGTCCAATAAACC--CCTGT--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCTAATGAGATTTC----------------AATGTC-----------CGATAAACGCCATTTTGTTGTCCAACAAACCCCAC--AAAACGTCCAATACTCCCG-ATATAGTGTAGTACTT-ATAAAAACAGTTGACTTGTAT--------G---TGATCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATTAAC-ATAT------CTATCGAAAATATACGA-GTC-Tcatatattactctagtgttcacatga
gi|6 : gAGTAATGTTGGG-AATATCGGACACC-----CGA------G-TTTTCCGGACAATTTGAAA-ATG-----------TGCTAT-------TTG-CAGCTATCTGCATGTAC--TA-CA-TTTGTTTTCAGACCATATCAAACC---AGCC-AGAATATTAACACATCCTAGGTAACATAGGGGTGTTTATGCACC------ATA----------------ATGACAA---TTTTGATTGGAAGAGAGC--GG-TTTGTGTAAACAAGTTTTTCTCTCAC-------A--TGTTCGCCCAGATAGAGATGGCA---ATATTTTTTTATATAGCA--TTTTCAACATGAAA-CAGAAAGGTT-GAACTTGTT-TTACAGTTATCAGTTTTGCA--TTAATTTGAAGAAATAAATT-GTGTTGAATAAG-AATTGAAACAA--ATGTATGCTTTAT-TTTTGTTATAAACAATGA-TTTAAATGAAAATAAAA---GTCCATTAAACC--TCTGA--TGAATAATTCAATGAGCTGTCTG----ATGAACCCCACATGACATTTC----------------AA---------------------------------TGTCTGATAAACCGCAC--AAAACATCCGATACTCCTA-ATGCA-TGCTGTACTT-TGAAAAACAGATGAGTTGTAT--------GTGTTGTTCT-----AGTTTCACGCTAT-TTGATCAACACAACTTCTC-GG--ACATAAAC-ATgaat
gi|7 : CACA-----TGT------GGCTT-----ACTATATAAAATATGCTT--------T------------TTA-CAGCATTCTGCATGTAC--TA-CA-CTTATTTTCATACCTTATTGAAGCTGAAGATAGGTACGTTAGCACATCCTAGA-AACATGTTGTTTTTTTTTTACCGTGACTATAC------------ATGACAGCCC---TTTTGATTGGAAGAGAAT--AG-TTTACATAAACAAGTTTCCTTT-CAC-------G--TTTTCACCAAGATAGAGCTGGTGCAAAAAATTT---ATATAGCA--TATTCAACATGAAAATAGAAAGGTT-AAAA-AGTA-TTAAGGTT-TAGATTTAGCA--TTTATTTGATAAAATGAATT-CTGTTGAATATGAAATTGAAACA----TATATGATTT--ATTTTATTATACACAACAA-TTTAAAGGAAAATAAAAG-TGTCCGATAAACC--CCTGCTTTGAATTACTAAACAtaaacatatctatcta
gi|8 : aaataaagtagacgaaacTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAATG-TATCTGATAAGCT--CCTGA--TAACTAATT----AAGCTGTCTGTCAGATGAACTGAGCATGAGATTTCCATGTCTTATG-----AA---C-----------C--------CCATTTTGTTGTCCAATAAACCCCAC--AAAACATCCATTACCTCCC-ATGCAGAGGTGTACTT-AGAAAAACAGTTGAGTGGTAC--------ATTTTGTTCT-----AGTTTTATGCCAT-TTTACCACCACAATTTCTA-GGATATATAAACAAAA-------TTATGGCAAATACAAAA-GTT-TATCCAAATTTCATTATATTTGCACC--TCAAGACGGACACAAATCCTATGATGTCCGATATTCCCCgtgattgaaattcctaaccataattttaat
gi|9 : cgAGTAATGTGGGGGAATATCTAACACC-----TTG------G-TTTTCAGGACGATTTGAAA-ATG-----------TGTTAT-------TTG-CAGCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGATCCTACCAA-GC---AGCG-GGTACAGTAACACATCCCAGATAACATACGGGTGATTAAGTACCATGTCAATAT------------GAGATGACAA---TTTTGATTGGAAGAGAGC--AG-TTCATGTTAACAAGTTTTTCTCTCAC-------A--TGTTCCCTC----AGCGCTGGCG---ATAATTTTTTATATCGCA--TTTTCAACAATAAA-CAGAATGGTT-TATCTGGTTGTTACAGTTACCAATTTTGTG------TTGGATGAAATAAATT-GTGTTGACTAAGAAAGTGGAACAAATATcatattactctaattatatgttaataatttctttgagaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTTGGAGGACAGGTTTGTTGCATAACTCTTTTGAGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111 1111111 1111 222222222222 11111 0000000000000000000000000000000000000000000000000 111111111 11111 333333333
lowQualScore : 2 555555555555555 1 1 888888 1 0000000 44 3 3 555 1111 1 0 000000000000 555 3 66 3 2 55 666 3 666 5 55 4 4 1 4 1 0 0 666 11 33 4 1 4 99999 4 4 55 999 1 0 9999 0 1 8888888888888888888888888888888888888888888888888 0 66 0 4 0 22 4 555555555 00000 4 1 4 66 4 777777777 5 5 2 6 0
lowQualScore : . ............... . . ...... . ....... .. . . ... .... . . ............ ... . .. . . .. ... . ... . .. . . . . . . . ... .. .. . . . ..... . . .. ... . . .... . . ................................................. . .. . . . .. . ......... ..... . . . .. . ......... . . . . .
lowQualScore : 0 888888888888888 2 8 888888 8 0000000 66 3 3 888 7777 8 4 444444444444 888 3 44 3 7 55 444 4 444 8 55 4 4 1 4 9 8 9 222 66 55 0 4 6 44444 4 0 55 000 3 7 4444 1 1 9999999999999999999999999999999999999999999999999 8 11 9 4 1 00 4 999999999 00000 0 1 4 11 4 888888888 0 7 2 7 7
consensus : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTCCT-CTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC---------------AA-----------C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
Reference ( family-1315 ) : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTCCC-CTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC---------------AA-----------C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
gi|1 : AGTAATTTAGGCATATATCAGACACCTGATGTCATGGT------TTTCTGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTCCTGCATCTAG--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCG-GATACGT-AACACATCCTGGATAATATACAGGTGTTTATGTACTGTGACAATAT------------GTGATGACAA---TTTTGATTGGAAGAGAACGG-CTCTGGTAAACAAG-TTTCAT-CTCACATGGTCGCTAAGATA---GCACTGGCG---ACAATTTTTTAAATCGCA--TTTTCAACATG-AAACAGAAATGTT-AAACTGGTT-TTACAGTTACCGATTTTCAG--TTTATTTGATAAAATAAATTAATGTTGAATAAGAAATTGAAACGAATATA-ATG--TTTTATTATATTATG---AATAA-TTC-AAT--------AAGCTGTCTGATGAACCAACATGA----GAT--TTCAA-----TGTCCG----AT------------AGAT-------------------------------------------C--------CTACTTTGTTGTCCATTAAACCCCAC--ACAACGTCTGATACTCCCC-AAGTAGTGCAGTATTT-CGTAAAAAAATCGACTGGTAA--------GTGTTGTTCT-----AGTTTCACGCAAT-TGGACCA--AC-ACTTCTT-GG--TCACGAAC-ATAATATTATCTATCAAAAATACAAGA-GTT-TATCTGATTTTCATAGCATTTG-GCTAAGCAAGACATACACAAATCTTAAGGTGTCGGTTATT
gi|10 : TTGCG--TTTATTTGACAAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATGTAT--GCTTA--ATTTTGTTATAAACAATAA-TTTAAATGAAAATAA--G-TGTCCTATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCTG----ATGAACCGCTCATGAGATTTC---------------AATGTCCAGTAAAC-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCAGATACTTCCC-ATGTAGTGTAGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AATTTCACACCAT-TTG---ACCACAACTTCTCAAG--ACATGAAC-A----------TATCTGAAACAactgattaccccatattact
gi|11 : ATTTGAAAATG------TGCT-TTTGCA-------GCTTTTTGCATGTAC--TA-CA-TTCGTATTCAGAACCTATCAATGA---AGCC------ATTAACTCATCCCAGTTAACATACGGGTGT------ACCCTAGCAATAT------------GTGACAACAA---TTTTATTTGGAAGAGA--------------ACAAG-TTTCCT-CTTATGCGATCGCCCAAATA---CAGCTGATG---ACAATTTTTTATATTACAATTTTTTAATGCG-AAACAAAAAGGTTAAAAATGGTT-TTACAGTT-------------------------AAAT----T-GTGTTGAATATGGAATTGAAACtttggcgaagcaagatattcccccatattactc
gi|12 : AGTATTATGTGAGAAGATCGGATGCTCGG------GGT------TTTCCGGATGATTTGAAAATACTAGTATGCTATTTACA-------GCATTCTGCATGTACCTTATCA-TCC-TTATCAGACCTTATCAAAGC---AGAC-AATAAATTACCACATTCCGGGTAACATACTGTTGTTTATGCACCGTGATGATATATATATATACCGGTAATATCAA---TTTTGATTGGAAGAAGTTGG-TTCACATGAACAAG-TT--CC-CTC
gi|13 : ATAAAAG-AAACTGA--AACT--CATG---TCAGTAATTCAACAAACTGTCTG----ATGAACCCCACA--AGATTTT--------------------------------------------------CA----G--GGCCGGTA-------C--AGGACA---GATTCTCCCCCATGCAATGGTGTACAT-AGAAAAACAATTGACTAACAC--------ATATTGTTCT-----CTTTTTA-ACCATATTTACCACCAAAACTTCTC-AG--ACATGAAC-ACAGAT----CTAACAGAAATAGAACA-G
gi|14 : GGGGAACATGGGATATCCAG------GGTGGGGGG-----GGACAATTTCAAAATG------TGCTATTT-----------CTTTCTGCAAGTAC--TA-CA-TTTGTATTCAGACTCTATTAAAG-------------CATTAACACATCCC-GGTAACATACGGGTGTTTATGCACCGTGACatctaacaga
gi|15 : aatAGCACATCATATGAAATATACGAGTGTTTATATAACATGACAATAT------------ATGGCGGCAA----TTTGATTTGAAGAGAGCAGTTTCACACAAATAAG-TTATTA-TTCAAATTTTCAATGAGACATCTG-GCTGGTG---ACGAATATTTAagttgactggtatcaaggg
gi|16 : ataatacgcaaggataaacCAGTTGACTGGTATCAAGGGATGTGTTGTTTT-----AGTTTTACGACAT-TGGACCACCTTAA---------------AAAT-AT--------CTGTCGGAAATACAGGA-GTT-TATCTAAATTTCATAACATTTG-GCCAAGCAAGCCAGACACAAATCCTaa
gi|17 : AGTAATACGCGAGAATATCAGACACATAC------G--------TTTCTGGACAATTTGGAAATA------TGCTGTTTATAAATTATAGTGTTCTATGTGTAA--TA-CACTTTGTTTTCAGACCCTATCAAAGC---AGAT-GACACATTTAC
gi|18 : gAGTAATTTGGGGGAATATTGTA-----------------------------A-GATTTGAAAATG------TGCTATTGACA-------GCATTCTGCATGTAC--TT-CA-TTTGTTTTCTGACCCCATTAAAGC---A
gi|2 : agAGTAATGTGGGGGAATAGCTGACACCCGG------GGT------TTTCTGGACAATTTGA----------------TTTGCA-------GCTTTCTGCATGAAC--TA-CA-TTT-TTTTCAGACCCTATCAAAGC---AGCC-AATACATTAACACATCCCGGGTAACATATGGGTGTTTATGCACCGTGACGACAT------------GTGACAACAA---TTTTGATTGGAAGAAAGCGA-TTTATGTAAACAAA-T-----------GTGTTCGCCCAAATC---GAGCTGGTG---ACATTTTTTTATATTGCA--TTTTCAACACA-AAACAGCAAGGTT-AAAATGGTT-TTACAGTTATTGATTTTGCA--TTTATTTGATGAAATAAATT-GTGTTGAATATGAAATTGAAACAAATATATATGCTTTTTTTTTTATCATAAACAATAATTTTAAATGAAAATAAAAG-TGTCTGATAAACC--CCTGA--CGAATAATTCAATAAGCTGTCTG----ATGAACCCCACATGAGA--TC---------------AA-----------C-----------C--------CCATTTGGTTGTCTAATAAACCACAC--AAAACGTCC--TACTCAAA-ATGTGGTGGTGTACTT-AGAAAAACAGATGATTGGTAA--------GTGTTTTTCT-----AGTTTTACACCAT-TTGACCACCACATCTTCTC-GG--ACATAAAC-ATA-------C-ATCGGAAATACAAGT-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACAGACACAATTCCTTAGGTGTCCAATATTCCCC
gi|3 : TAATGTGGGGAAATGTTGGACACCCGG------GGT------TTTCCGGACAATTTGAAAACG------TGCTATTTGCA-------G
gi|3 : ATATC-----------GTTACGGTAAACATTTT---TGCAAGACAGCGG-TTCGTGTAAATAAG-TTTTCC-CTCGTGCGTTTACTCAGATA---GGGATATCT---GCAA------ATAGCACG--TTTTCAAatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgtttaccgtaacgatatgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|3 : taatgtggggaaatgttggacacccggggttttccggacaatTACCGTAACGATAT------------GTGACATCAA---TTTTGATTGGAAGAGAGCGG-TTCTTGTAAACAAG-TTTCCC-CTCATGTGTTCGCCCTGATT---GAGCCGACG---GCAATTTTTTATATCTCA--TTTTCAATACG-ACACAGAGA----------GGTT-TAACAGTTATCG-TT-----------TTTGATGAAATTAATT-GTGTTGAATAAGAAAGTGAATCAAATATAT----TCTTTATCTTATCATAAACAATAA-TTTAAATGAAAATAAAAG-TGTTTGATAAACC--CCTGA--TTAACAATTCAATAAGCTATCCA----ATGAA-CCCACATGAGTTTTCAATGGATGTCCAATAAA-----------C-----------C--------TCATTTTATTGTCTGATAAACCCCACCAAAAATGTCTGATACTCTCC-ATGCAGTGGTGTACTT-AGAAAAACAGTTGACTGGTAT--------GTGTTATTTT-----AGTTTT-TGTCAT-TTGACCAAAACAACTTCTT-AG--ACATGAAC-ACAT------CTATCAGAAATACAAGA-G-----------TTTCATAACATTTG-GCTAAGAATGACAGACACAAATCCTGAGGTGTCCGATATTCCCCgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|4 : taatgtggggaaatgttggacacccggggttttccggacaatttgaaaacgtgctatttgcagatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgttAGTTATACGGGGGAATATTGGACACCTGG------GGC------TTTCCATAC--TTTGAAAATA------TGCTATTTGCA-------GTTTTCTGCATGCAC--TA-CA-TTTGTTTTCAGACCCTAT-AAAGC---AGCA-GTTACAGAAACACATCCCGGATAACATTCAAATGTTTATGTACTGAGAGGATAT------------GTGATGACAA---TTTTGATTGCAAGAGAGCAG-TTTGTGTAAACAAA-TTACCT-TTCACATGTTCGCTCAGATA---GCGCTGGCA---ACAACATTTTTTATCGCA--TTTTCAATACA-AAACAGAAAGGTT-AAACTCGTT-TTGCAGTTAACGATTTTGCG--TTTATGTGACAAAATAAATT-GTGTTGAATGAGAAATTGAATCAAATATATG----TTTTATATTATTATAAACAATAA-TTTAAATAAAAGTA---------CGATAAACC--CCTGT--TGAATAATTCAATAAACTGTCTG----ATGAACCTCACATAAGATTTT---------------AA-----------TATCCGTTAAGAC--------CCATTTTGTTGTCCGTTAAACCCCAC--AAAA-GTCTGATTCTCCCC-ATGTATTGCAGTACTTGAAAAAAACAGTTGATTGATAC--------AAGTTGTTCTATCCAAATTTCATAACAC-GTGGCCAcata
gi|4 : aaATACAAGTTGTTCTATCCAAATTTCATAACACGTG-GCCAAGCAAGACGGACACAAATCGTAAGGTGGCAGATATTCTCCagcaagacggacacaaatcgtaaggtggcagatattctcccatatattactctagtgttcacatga
gi|5 : aaagttatacgggggaatattggacacctggggctttccatactttgaaaatatgctatttgcagttttctgcatgcactacatttgttttcagaccctataaagcagcagttacagaaacacatcccggataacattcaaatgtttatgtactgagaggatatgtgatgacaattttgattgcaagagagcagtttgtgtaaacaaattacctttcacatgttcgctcagatagcgctggcaacaacattttttatcgcattttcaatacaaaacagaaaggttaaactcgttttgcagttaacgattttgcgtttatgtgacaaaataaattgtgttgaatgagaaattgaatcaaatatatgttttatattattataaacaataatttaaataaaagtacgataaacccctgttgaataattcaataaactgtctgatgaacctcacataagattttaatatccgttaagacccattttgttgtccgttaaaccccacaaaagtctgattctccccatgtattgcagtacttgaaaaaaacagttgattgAGTCATGTTGGGGAATATC----ACCTGG------GGT------TTTCCGAACGATTTGAAAATG------TGCTTTTTGCA-------GCTCTTTGCATGTAC--TA-CA-TTAGTTTTTAGACCCTATCATAGC---AACA-GGTACAGTAACACATCCCGGATAACAT--GGGTGTTTATGTACTGTGACGATAT------------GTGATAACAA---TTTTGATTCGAAGAGGGCAG-TTCGTGTTAACAAC-CTCCCT-CTCGCTTGTTCGCTCAGATA---CA-CTGGCT---A----TTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTATGCGGATTTTTTTTACATAATAAATT-GTGTTGAATATGAAATTGAAACAA--ATGTATGC--TTTATTTTATTATAAACAATCA-TTTAAATGAAAATAAAAG-TGTCCAATAAACC--CCTGT--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCTAATGAGATTTC---------------AATGT--------C-----------CGATAAACGCCATTTTGTTGTCCAACAAACCCCAC--AAAACGTCCAATACTCCCG-ATATAGTGTAGTACTT-ATAAAAACAGTTGACTTGTAT--------G---TGATCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATTAAC-ATAT------CTATCGAAAATATACGA-GTC-Tcatatattactctagtgttcacatga
gi|6 : gAGTAATGTTGGG-AATATCGGACACCCGA------G-T------TTTCCGGACAATTTGAAAATG------TGCTATTTGCA-------GCTATCTGCATGTAC--TA-CA-TTTGTTTTCAGACCATATCAAACC---AGCC-AGAATATTAACACATCCTAGGTAACATAGGGGTGTTTATGCACC------ATA----------------ATGACAA---TTTTGATTGGAAGAGAGCGG-TTTGTGTAAACAAG-TTTTTCTCTCACATGTTCGCCCAGATA---GAGATGGCA---ATATTTTTTTATATAGCA--TTTTCAACATG-AAACAGAAAGGTT-GAACTTGTT-TTACAGTTATCAGTTTTGCA--TTAATTTGAAGAAATAAATT-GTGTTGAATAAG-AATTGAAACAA--ATGTATGCTTTAT-TTTTGTTATAAACAATGA-TTTAAATGAAAATAAAA---GTCCATTAAACC--TCTGA--TGAATAATTCAATGAGCTGTCTG----ATGAACCCCACATGACATTTC---------------AA-----------------------------------------TGTCTGATAAACCGCAC--AAAACATCCGATACTCCTA-ATGCA-TGCTGTACTT-TGAAAAACAGATGAGTTGTAT--------GTGTTGTTCT-----AGTTTCACGCTAT-TTGATCAACACAACTTCTC-GG--ACATAAAC-ATgaat
gi|7 : AAAATA------TGCTTTTTACA-------GCATTCTGCATGTAC--TA-CA-CTTATTTTCATACCTTATTGAAGCTGAAGATAGGTACGTTAGCACATCCTAGA-AACATGTTGTTTTTTTTTTACCGTGACTATAC------------ATGACAGCCC---TTTTGATTGGAAGAGAATAG-TTTACATAAACAAG-TTTCCT-TTCACGTTTTCACCAAGATA---GAGCTGGTGCAAAAAA---TTTATATAGCA--TATTCAACATGAAAATAGAAAGGTT-AAAA-AGTA-TTAAGGTT-TAGATTTAGCA--TTTATTTGATAAAATGAATT-CTGTTGAATATGAAATTGAAAC----ATATATGA--TTTATTTTATTATACACAACAA-TTTAAAGGAAAATAAAAG-TGTCCGATAAACC--CCTGCTTTGAATTACTAAACAtaaacatatctatcta
gi|8 : aaataaagtagacgaaaccacatgtggcttactatatTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAATG-TATCTGATAAGCT--CCTGA--TAACTAATT----AAGCTGTCTGTCAGATGAACTGAGCATGAGATTTCCATGTCTTATG----AA-----------C-----------C--------CCATTTTGTTGTCCAATAAACCCCAC--AAAACATCCATTACCTCCC-ATGCAGAGGTGTACTT-AGAAAAACAGTTGAGTGGTAC--------ATTTTGTTCT-----AGTTTTATGCCAT-TTTACCACCACAATTTCTA-GGATATATAAACAAAA-------TTATGGCAAATACAAAA-GTT-TATCCAAATTTCATTATATTTGCACC--TCAAGACGGACACAAATCCTATGATGTCCGATATTCCCCgtgattgaaattcctaaccataattttaat
gi|9 : cgAGTAATGTGGGGGAATATCTAACACCTTG------G-T------TTTCAGGACGATTTGAAAATG------TGTTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGATCCTACCAA-GC---AGCG-GGTACAGTAACACATCCCAGATAACATACGGGTGATTAAGTACCATGTCAATAT------------GAGATGACAA---TTTTGATTGGAAGAGAGCAG-TTCATGTTAACAAGTTTTTCT-CTCACATGTTCCCTC----A---GCGCTGGCG---ATAATTTTTTATATCGCA--TTTTCAACAAT-AAACAGAATGGTT-TATCTGGTTGTTACAGTTACCAATTTTGTG------TTGGATGAAATAAATT-GTGTTGACTAAGAAAGTGGAACAAATATcatattactctaattatatgttaataatttctttgagaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTTGGAGGACAGGTTTGTTGCATAACTCTTTTGAGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111 1111111 1111 222222222222 11111 0000000000000000000000000000000000000000000000000 111111111 11111 333333333
lowQualScore : 2 555555555555555 1 1 888888 1 0000000 44 3 3 555 1111 1 0 000000000000 555 3 66 3 3 666 3 666 5 55 4 4 1 4 1 0 0 666 11 33 4 1 4 99999 4 4 55 999 1 0 9999 0 1 8888888888888888888888888888888888888888888888888 0 66 0 4 0 22 4 555555555 00000 4 1 4 66 4 777777777 5 5 2 6 0
lowQualScore : . ............... . . ...... . ....... .. . . ... .... . . ............ ... . .. . . ... . ... . .. . . . . . . . ... .. .. . . . ..... . . .. ... . . .... . . ................................................. . .. . . . .. . ......... ..... . . . .. . ......... . . . . .
lowQualScore : 0 888888888888888 2 8 888888 8 0000000 66 3 3 888 7777 8 4 444444444444 888 3 44 3 3 444 4 444 8 55 4 4 1 4 9 8 9 222 66 55 0 4 6 44444 4 0 55 000 3 7 4444 1 1 9999999999999999999999999999999999999999999999999 8 11 9 4 1 00 4 999999999 00000 0 1 4 11 4 888888888 0 7 2 7 7
consensus : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC---------------AA-----------C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
Reference ( family-1315 ) : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC---------------AA-----------C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
gi|1 : AGTAATTTAGGCATATATCAGACACCTGATGTCATGGT------TTTCTGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTCCTGCATCTAG--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCG-GATACGT-AACACATCCTGGATAATATACAGGTGTTTATGTACTGTGACAATAT------------GTGATGACAA---TTTTGATTGGAAGAGAACGG-CTCTGGTAAACAAG-TTTC-ATCTCACATGGTCGCTAAGATA---GCACTGGCG---ACAATTTTTTAAATCGCA--TTTTCAACATG-AAACAGAAATGTT-AAACTGGTT-TTACAGTTACCGATTTTCAG--TTTATTTGATAAAATAAATTAATGTTGAATAAGAAATTGAAACGAATATA-ATG--TTTTATTATATTATG---AATAA-TTC-AAT--------AAGCTGTCTGATGAACCAACATGA----GAT--TTCAA-----TGTCCG----AT------------AGAT-------------------------------------------C--------CTACTTTGTTGTCCATTAAACCCCAC--ACAACGTCTGATACTCCCC-AAGTAGTGCAGTATTT-CGTAAAAAAATCGACTGGTAA--------GTGTTGTTCT-----AGTTTCACGCAAT-TGGACCA--AC-ACTTCTT-GG--TCACGAAC-ATAATATTATCTATCAAAAATACAAGA-GTT-TATCTGATTTTCATAGCATTTG-GCTAAGCAAGACATACACAAATCTTAAGGTGTCGGTTATT
gi|10 : TTGCG--TTTATTTGACAAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATGTAT--GCTTA--ATTTTGTTATAAACAATAA-TTTAAATGAAAATAA--G-TGTCCTATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCTG----ATGAACCGCTCATGAGATTTC---------------AATGTCCAGTAAAC-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCAGATACTTCCC-ATGTAGTGTAGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AATTTCACACCAT-TTG---ACCACAACTTCTCAAG--ACATGAAC-A----------TATCTGAAACAactgattaccccatattact
gi|11 : ATTTGAAAATG------TGCT-TTTGCA-------GCTTTTTGCATGTAC--TA-CA-TTCGTATTCAGAACCTATCAATGA---AGCC------ATTAACTCATCCCAGTTAACATACGGGTGT------ACCCTAGCAATAT------------GTGACAACAA---TTTTATTTGGAAGAGA--------------ACAAG-TTTC-CTCTTATGCGATCGCCCAAATA---CAGCTGATG---ACAATTTTTTATATTACAATTTTTTAATGCG-AAACAAAAAGGTTAAAAATGGTT-TTACAGTT-------------------------AAAT----T-GTGTTGAATATGGAATTGAAACtttggcgaagcaagatattcccccatattactc
gi|12 : AGTATTATGTGAGAAGATCGGATGCTCGG------GGT------TTTCCGGATGATTTGAAAATACTAGTATGCTATTTACA-------GCATTCTGCATGTACCTTATCA-TCC-TTATCAGACCTTATCAAAGC---AGAC-AATAAATTACCACATTCCGGGTAACATACTGTTGTTTATGCACCGTGATGATATATATATATACCGGTAATATCAA---TTTTGATTGGAAGAAGTTGG-TTCACATGAACAAG-TTCC-CTC
gi|13 : ATAAAAG-AAACTGA--AACT--CATG---TCAGTAATTCAACAAACTGTCTG----ATGAACCCCACA--AGATTTT--------------------------------------------------CA----G--GGCCGGTA-------C--AGGACA---GATTCTCCCCCATGCAATGGTGTACAT-AGAAAAACAATTGACTAACAC--------ATATTGTTCT-----CTTTTTA-ACCATATTTACCACCAAAACTTCTC-AG--ACATGAAC-ACAGAT----CTAACAGAAATAGAACA-G
gi|14 : GGGGAACATGGGATATCCAG------GGTGGGGGG-----GGACAATTTCAAAATG------TGCTATTT-----------CTTTCTGCAAGTAC--TA-CA-TTTGTATTCAGACTCTATTAAAG-------------CATTAACACATCCC-GGTAACATACGGGTGTTTATGCACCGTGACatctaacaga
gi|15 : aatAGCACATCATATGAAATATACGAGTGTTTATATAACATGACAATAT------------ATGGCGGCAA----TTTGATTTGAAGAGAGCAGTTTCACACAAATAAG-TTAT-TATTCAAATTTTCAATGAGACATCTG-GCTGGTG---ACGAATATTTAagttgactggtatcaaggg
gi|16 : ataatacgcaaggataaacCAGTTGACTGGTATCAAGGGATGTGTTGTTTT-----AGTTTTACGACAT-TGGACCACCTTAA---------------AAAT-AT--------CTGTCGGAAATACAGGA-GTT-TATCTAAATTTCATAACATTTG-GCCAAGCAAGCCAGACACAAATCCTaa
gi|17 : AGTAATACGCGAGAATATCAGACACATAC------G--------TTTCTGGACAATTTGGAAATA------TGCTGTTTATAAATTATAGTGTTCTATGTGTAA--TA-CACTTTGTTTTCAGACCCTATCAAAGC---AGAT-GACACATTTAC
gi|18 : gAGTAATTTGGGGGAATATTGTA-----------------------------A-GATTTGAAAATG------TGCTATTGACA-------GCATTCTGCATGTAC--TT-CA-TTTGTTTTCTGACCCCATTAAAGC---A
gi|2 : agAGTAATGTGGGGGAATAGCTGACACCCGG------GGT------TTTCTGGACAATTTGA----------------TTTGCA-------GCTTTCTGCATGAAC--TA-CA-TTT-TTTTCAGACCCTATCAAAGC---AGCC-AATACATTAACACATCCCGGGTAACATATGGGTGTTTATGCACCGTGACGACAT------------GTGACAACAA---TTTTGATTGGAAGAAAGCGA-TTTATGTAAACAAA-T-----------GTGTTCGCCCAAATC---GAGCTGGTG---ACATTTTTTTATATTGCA--TTTTCAACACA-AAACAGCAAGGTT-AAAATGGTT-TTACAGTTATTGATTTTGCA--TTTATTTGATGAAATAAATT-GTGTTGAATATGAAATTGAAACAAATATATATGCTTTTTTTTTTATCATAAACAATAATTTTAAATGAAAATAAAAG-TGTCTGATAAACC--CCTGA--CGAATAATTCAATAAGCTGTCTG----ATGAACCCCACATGAGA--TC---------------AA-----------C-----------C--------CCATTTGGTTGTCTAATAAACCACAC--AAAACGTCC--TACTCAAA-ATGTGGTGGTGTACTT-AGAAAAACAGATGATTGGTAA--------GTGTTTTTCT-----AGTTTTACACCAT-TTGACCACCACATCTTCTC-GG--ACATAAAC-ATA-------C-ATCGGAAATACAAGT-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACAGACACAATTCCTTAGGTGTCCAATATTCCCC
gi|3 : TAATGTGGGGAAATGTTGGACACCCGG------GGT------TTTCCGGACAATTTGAAAACG------TGCTATTTGCA-------G
gi|3 : ATATC-----------GTTACGGTAAACATTTT---TGCAAGACAGCGG-TTCGTGTAAATAAG-TTTT-CCCTCGTGCGTTTACTCAGATA---GGGATATCT---GCAA------ATAGCACG--TTTTCAAatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgtttaccgtaacgatatgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|3 : taatgtggggaaatgttggacacccggggttttccggacaatTACCGTAACGATAT------------GTGACATCAA---TTTTGATTGGAAGAGAGCGG-TTCTTGTAAACAAG-TTTC-CCCTCATGTGTTCGCCCTGATT---GAGCCGACG---GCAATTTTTTATATCTCA--TTTTCAATACG-ACACAGAGA----------GGTT-TAACAGTTATCG-TT-----------TTTGATGAAATTAATT-GTGTTGAATAAGAAAGTGAATCAAATATAT----TCTTTATCTTATCATAAACAATAA-TTTAAATGAAAATAAAAG-TGTTTGATAAACC--CCTGA--TTAACAATTCAATAAGCTATCCA----ATGAA-CCCACATGAGTTTTCAATGGATGTCCAATAAA-----------C-----------C--------TCATTTTATTGTCTGATAAACCCCACCAAAAATGTCTGATACTCTCC-ATGCAGTGGTGTACTT-AGAAAAACAGTTGACTGGTAT--------GTGTTATTTT-----AGTTTT-TGTCAT-TTGACCAAAACAACTTCTT-AG--ACATGAAC-ACAT------CTATCAGAAATACAAGA-G-----------TTTCATAACATTTG-GCTAAGAATGACAGACACAAATCCTGAGGTGTCCGATATTCCCCgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|4 : taatgtggggaaatgttggacacccggggttttccggacaatttgaaaacgtgctatttgcagatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgttAGTTATACGGGGGAATATTGGACACCTGG------GGC------TTTCCATAC--TTTGAAAATA------TGCTATTTGCA-------GTTTTCTGCATGCAC--TA-CA-TTTGTTTTCAGACCCTAT-AAAGC---AGCA-GTTACAGAAACACATCCCGGATAACATTCAAATGTTTATGTACTGAGAGGATAT------------GTGATGACAA---TTTTGATTGCAAGAGAGCAG-TTTGTGTAAACAAA-TTAC-CTTTCACATGTTCGCTCAGATA---GCGCTGGCA---ACAACATTTTTTATCGCA--TTTTCAATACA-AAACAGAAAGGTT-AAACTCGTT-TTGCAGTTAACGATTTTGCG--TTTATGTGACAAAATAAATT-GTGTTGAATGAGAAATTGAATCAAATATATG----TTTTATATTATTATAAACAATAA-TTTAAATAAAAGTA---------CGATAAACC--CCTGT--TGAATAATTCAATAAACTGTCTG----ATGAACCTCACATAAGATTTT---------------AA-----------TATCCGTTAAGAC--------CCATTTTGTTGTCCGTTAAACCCCAC--AAAA-GTCTGATTCTCCCC-ATGTATTGCAGTACTTGAAAAAAACAGTTGATTGATAC--------AAGTTGTTCTATCCAAATTTCATAACAC-GTGGCCAcata
gi|4 : aaATACAAGTTGTTCTATCCAAATTTCATAACACGTG-GCCAAGCAAGACGGACACAAATCGTAAGGTGGCAGATATTCTCCagcaagacggacacaaatcgtaaggtggcagatattctcccatatattactctagtgttcacatga
gi|5 : aaagttatacgggggaatattggacacctggggctttccatactttgaaaatatgctatttgcagttttctgcatgcactacatttgttttcagaccctataaagcagcagttacagaaacacatcccggataacattcaaatgtttatgtactgagaggatatgtgatgacaattttgattgcaagagagcagtttgtgtaaacaaattacctttcacatgttcgctcagatagcgctggcaacaacattttttatcgcattttcaatacaaaacagaaaggttaaactcgttttgcagttaacgattttgcgtttatgtgacaaaataaattgtgttgaatgagaaattgaatcaaatatatgttttatattattataaacaataatttaaataaaagtacgataaacccctgttgaataattcaataaactgtctgatgaacctcacataagattttaatatccgttaagacccattttgttgtccgttaaaccccacaaaagtctgattctccccatgtattgcagtacttgaaaaaaacagttgattgAGTCATGTTGGGGAATATC----ACCTGG------GGT------TTTCCGAACGATTTGAAAATG------TGCTTTTTGCA-------GCTCTTTGCATGTAC--TA-CA-TTAGTTTTTAGACCCTATCATAGC---AACA-GGTACAGTAACACATCCCGGATAACAT--GGGTGTTTATGTACTGTGACGATAT------------GTGATAACAA---TTTTGATTCGAAGAGGGCAG-TTCGTGTTAACAAC-CTCC-CTCTCGCTTGTTCGCTCAGATA---CA-CTGGCT---A----TTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTATGCGGATTTTTTTTACATAATAAATT-GTGTTGAATATGAAATTGAAACAA--ATGTATGC--TTTATTTTATTATAAACAATCA-TTTAAATGAAAATAAAAG-TGTCCAATAAACC--CCTGT--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCTAATGAGATTTC---------------AATGT--------C-----------CGATAAACGCCATTTTGTTGTCCAACAAACCCCAC--AAAACGTCCAATACTCCCG-ATATAGTGTAGTACTT-ATAAAAACAGTTGACTTGTAT--------G---TGATCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATTAAC-ATAT------CTATCGAAAATATACGA-GTC-Tcatatattactctagtgttcacatga
gi|6 : gAGTAATGTTGGG-AATATCGGACACCCGA------G-T------TTTCCGGACAATTTGAAAATG------TGCTATTTGCA-------GCTATCTGCATGTAC--TA-CA-TTTGTTTTCAGACCATATCAAACC---AGCC-AGAATATTAACACATCCTAGGTAACATAGGGGTGTTTATGCACC------ATA----------------ATGACAA---TTTTGATTGGAAGAGAGCGG-TTTGTGTAAACAAG-TTTTTCTCTCACATGTTCGCCCAGATA---GAGATGGCA---ATATTTTTTTATATAGCA--TTTTCAACATG-AAACAGAAAGGTT-GAACTTGTT-TTACAGTTATCAGTTTTGCA--TTAATTTGAAGAAATAAATT-GTGTTGAATAAG-AATTGAAACAA--ATGTATGCTTTAT-TTTTGTTATAAACAATGA-TTTAAATGAAAATAAAA---GTCCATTAAACC--TCTGA--TGAATAATTCAATGAGCTGTCTG----ATGAACCCCACATGACATTTC---------------AA-----------------------------------------TGTCTGATAAACCGCAC--AAAACATCCGATACTCCTA-ATGCA-TGCTGTACTT-TGAAAAACAGATGAGTTGTAT--------GTGTTGTTCT-----AGTTTCACGCTAT-TTGATCAACACAACTTCTC-GG--ACATAAAC-ATgaat
gi|7 : AAAATA------TGCTTTTTACA-------GCATTCTGCATGTAC--TA-CA-CTTATTTTCATACCTTATTGAAGCTGAAGATAGGTACGTTAGCACATCCTAGA-AACATGTTGTTTTTTTTTTACCGTGACTATAC------------ATGACAGCCC---TTTTGATTGGAAGAGAATAG-TTTACATAAACAAG-TTTC-CTTTCACGTTTTCACCAAGATA---GAGCTGGTGCAAAAAA---TTTATATAGCA--TATTCAACATGAAAATAGAAAGGTT-AAAA-AGTA-TTAAGGTT-TAGATTTAGCA--TTTATTTGATAAAATGAATT-CTGTTGAATATGAAATTGAAAC----ATATATGA--TTTATTTTATTATACACAACAA-TTTAAAGGAAAATAAAAG-TGTCCGATAAACC--CCTGCTTTGAATTACTAAACAtaaacatatctatcta
gi|8 : aaataaagtagacgaaaccacatgtggcttactatatTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAATG-TATCTGATAAGCT--CCTGA--TAACTAATT----AAGCTGTCTGTCAGATGAACTGAGCATGAGATTTCCATGTCTTATG----AA-----------C-----------C--------CCATTTTGTTGTCCAATAAACCCCAC--AAAACATCCATTACCTCCC-ATGCAGAGGTGTACTT-AGAAAAACAGTTGAGTGGTAC--------ATTTTGTTCT-----AGTTTTATGCCAT-TTTACCACCACAATTTCTA-GGATATATAAACAAAA-------TTATGGCAAATACAAAA-GTT-TATCCAAATTTCATTATATTTGCACC--TCAAGACGGACACAAATCCTATGATGTCCGATATTCCCCgtgattgaaattcctaaccataattttaat
gi|9 : cgAGTAATGTGGGGGAATATCTAACACCTTG------G-T------TTTCAGGACGATTTGAAAATG------TGTTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGATCCTACCAA-GC---AGCG-GGTACAGTAACACATCCCAGATAACATACGGGTGATTAAGTACCATGTCAATAT------------GAGATGACAA---TTTTGATTGGAAGAGAGCAG-TTCATGTTAACAAGTTTTT-CTCTCACATGTTCCCTC----A---GCGCTGGCG---ATAATTTTTTATATCGCA--TTTTCAACAAT-AAACAGAATGGTT-TATCTGGTTGTTACAGTTACCAATTTTGTG------TTGGATGAAATAAATT-GTGTTGACTAAGAAAGTGGAACAAATATcatattactctaattatatgttaataatttctttgagaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTTGGAGGACAGGTTTGTTGCATAACTCTTTTGAGAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111 1111111 1111 222222222222 11111 0000000000000000000000000000000000000000000000000 111111111 11111 333333333
lowQualScore : 2 555555555555555 1 1 888888 1 0000000 44 3 3 555 1111 1 0 000000000000 555 3 66 3 3 666 3 666 5 55 4 4 1 4 1 0 0 666 11 33 4 1 4 99999 4 4 55 999 1 0 9999 0 1 8888888888888888888888888888888888888888888888888 0 66 0 4 0 22 4 555555555 00000 4 1 4 66 4 777777777 5 5 2 6 0
lowQualScore : . ............... . . ...... . ....... .. . . ... .... . . ............ ... . .. . . ... . ... . .. . . . . . . . ... .. .. . . . ..... . . .. ... . . .... . . ................................................. . .. . . . .. . ......... ..... . . . .. . ......... . . . . .
lowQualScore : 0 888888888888888 2 8 888888 8 0000000 66 3 3 888 7777 8 4 444444444444 888 3 44 3 3 444 4 444 8 55 4 4 1 4 9 8 9 222 66 55 0 4 6 44444 4 0 55 000 3 7 4444 1 1 9999999999999999999999999999999999999999999999999 8 11 9 4 1 00 4 999999999 00000 0 1 4 11 4 888888888 0 7 2 7 7
consensus : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC---------------AA-----------C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
Reference ( family-1315 ) : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC---------------AA-----------C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
gi|1 : AGTAATTTAGGCATATATCAGACACCTGATGTCATGGT------TTTCTGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTCCTGCATCTAG--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCG-GATACGT-AACACATCCTGGATAATATACAGGTGTTTATGTACTGTGACAATAT------------GTGATGACAA---TTTTGATTGGAAGAGAACGG-CTCTGGTAAACAAG-TTTC-ATCTCACATGGTCGCTAAGATA---GCACTGGCG---ACAATTTTTTAAATCGCA--TTTTCAACATG-AAACAGAAATGTT-AAACTGGTT-TTACAGTTACCGATTTTCAG--TTTATTTGATAAAATAAATTAATGTTGAATAAGAAATTGAAACGAATATA-ATG--TTTTATTATATTATG---AATAA-TTC-AAT--------AAGCTGTCTGATGAACCAACATGA----GAT--TTCAA-----TGTCCG----AT------------AGAT-------------------------------------------C--------CTACTTTGTTGTCCATTAAACCCCAC--ACAACGTCTGATACTCCCC-AAGTAGTGCAGTATTT-CGTAAAAAAATCGACTGGTAA--------GTGTTGTTCT-----AGTTTCACGCAAT-TGGACCA--AC-ACTTCTT-GG--TCACGAAC-ATAATATTATCTATCAAAAATACAAGA-GTT-TATCTGATTTTCATAGCATTTG-GCTAAGCAAGACATACACAAATCTTAAGGTGTCGGTTATT
gi|10 : TTGCG--TTTATTTGACAAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATGTAT--GCTTA--ATTTTGTTATAAACAATAA-TTTAAATGAAAATAA--G-TGTCCTATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCTG----ATGAACCGCTCATGAGATTTC---------------AATGTCCAGTAAAC-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCAGATACTTCCC-ATGTAGTGTAGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AATTTCACACCAT-TTG---ACCACAACTTCTCAAG--ACATGAAC-A----------TATCTGAAACAactgattaccccatattact
gi|11 : ATTTGAAAATG------TGCT-TTTGCA-------GCTTTTTGCATGTAC--TA-CA-TTCGTATTCAGAACCTATCAATGA---AGCC------ATTAACTCATCCCAGTTAACATACGGGTGT------ACCCTAGCAATAT------------GTGACAACAA---TTTTATTTGGAAGAGA--------------ACAAG-TTTC-CTCTTATGCGATCGCCCAAATA---CAGCTGATG---ACAATTTTTTATATTACAATTTTTTAATGCG-AAACAAAAAGGTTAAAAATGGTT-TTACAGTT-------------------------AAAT----T-GTGTTGAATATGGAATTGAAACtttggcgaagcaagatattcccccatattactc
gi|12 : AGTATTATGTGAGAAGATCGGATGCTCGG------GGT------TTTCCGGATGATTTGAAAATACTAGTATGCTATTTACA-------GCATTCTGCATGTACCTTATCA-TCC-TTATCAGACCTTATCAAAGC---AGAC-AATAAATTACCACATTCCGGGTAACATACTGTTGTTTATGCACCGTGATGATATATATATATACCGGTAATATCAA---TTTTGATTGGAAGAAGTTGG-TTCACATGAACAAG-TTCC-CTC
gi|13 : ATAAAAG-AAACTGA--AACT--CATG---TCAGTAATTCAACAAACTGTCTG----ATGAACCCCACA--AGATTTT--------------------------------------------------CA----G--GGCCGGTA-------C--AGGACA---GATTCTCCCCCATGCAATGGTGTACAT-AGAAAAACAATTGACTAACAC--------ATATTGTTCT-----CTTTTTA-ACCATATTTACCACCAAAACTTCTC-AG--ACATGAAC-ACAGAT----CTAACAGAAATAGAACA-G
gi|14 : GGGGAACATGGGATATCCAG------GGTGGGGGG-----GGACAATTTCAAAATG------TGCTATTT-----------CTTTCTGCAAGTAC--TA-CA-TTTGTATTCAGACTCTATTAAAG-------------CATTAACACATCCC-GGTAACATACGGGTGTTTATGCACCGTGACatctaacaga
gi|15 : aatAGCACATCATATGAAATATACGAGTGTTTATATAACATGACAATAT------------ATGGCGGCAA----TTTGATTTGAAGAGAGCAGTTTCACACAAATAAG-TTAT-TATTCAAATTTTCAATGAGACATCTG-GCTGGTG---ACGAATATTTAagttgactggtatcaaggg
gi|16 : ataatacgcaaggataaacCAGTTGACTGGTATCAAGGGATGTGTTGTTTT-----AGTTTTACGACAT-TGGACCACCTTAA---------------AAAT-AT--------CTGTCGGAAATACAGGA-GTT-TATCTAAATTTCATAACATTTG-GCCAAGCAAGCCAGACACAAATCCTaa
gi|17 : AGTAATACGCGAGAATATCAGACACATAC------G--------TTTCTGGACAATTTGGAAATA------TGCTGTTTATAAATTATAGTGTTCTATGTGTAA--TA-CACTTTGTTTTCAGACCCTATCAAAGC---AGAT-GACACATTTAC
gi|18 : gAGTAATTTGGGGGAATATTGTA-----------------------------A-GATTTGAAAATG------TGCTATTGACA-------GCATTCTGCATGTAC--TT-CA-TTTGTTTTCTGACCCCATTAAAGC---A
gi|2 : agAGTAATGTGGGGGAATAGCTGACACCCGG------GGT------TTTCTGGACAATTTGA----------------TTTGCA-------GCTTTCTGCATGAAC--TA-CA-TTT-TTTTCAGACCCTATCAAAGC---AGCC-AATACATTAACACATCCCGGGTAACATATGGGTGTTTATGCACCGTGACGACAT------------GTGACAACAA---TTTTGATTGGAAGAAAGCGA-TTTATGTAAACAAA-T-----------GTGTTCGCCCAAATC---GAGCTGGTG---ACATTTTTTTATATTGCA--TTTTCAACACA-AAACAGCAAGGTT-AAAATGGTT-TTACAGTTATTGATTTTGCA--TTTATTTGATGAAATAAATT-GTGTTGAATATGAAATTGAAACAAATATATATGCTTTTTTTTTTATCATAAACAATAATTTTAAATGAAAATAAAAG-TGTCTGATAAACC--CCTGA--CGAATAATTCAATAAGCTGTCTG----ATGAACCCCACATGAGA--TC---------------AA-----------C-----------C--------CCATTTGGTTGTCTAATAAACCACAC--AAAACGTCC--TACTCAAA-ATGTGGTGGTGTACTT-AGAAAAACAGATGATTGGTAA--------GTGTTTTTCT-----AGTTTTACACCAT-TTGACCACCACATCTTCTC-GG--ACATAAAC-ATA-------C-ATCGGAAATACAAGT-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACAGACACAATTCCTTAGGTGTCCAATATTCCCC
gi|3 : TAATGTGGGGAAATGTTGGACACCCGG------GGT------TTTCCGGACAATTTGAAAACG------TGCTATTTGCA-------G
gi|3 : ATATC-----------GTTACGGTAAACATTTT---TGCAAGACAGCGG-TTCGTGTAAATAAG-TTTT-CCCTCGTGCGTTTACTCAGATA---GGGATATCT---GCAA------ATAGCACG--TTTTCAAatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgtttaccgtaacgatatgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|3 : taatgtggggaaatgttggacacccggggttttccggacaatTACCGTAACGATAT------------GTGACATCAA---TTTTGATTGGAAGAGAGCGG-TTCTTGTAAACAAG-TTTC-CCCTCATGTGTTCGCCCTGATT---GAGCCGACG---GCAATTTTTTATATCTCA--TTTTCAATACG-ACACAGAGA----------GGTT-TAACAGTTATCG-TT-----------TTTGATGAAATTAATT-GTGTTGAATAAGAAAGTGAATCAAATATAT----TCTTTATCTTATCATAAACAATAA-TTTAAATGAAAATAAAAG-TGTTTGATAAACC--CCTGA--TTAACAATTCAATAAGCTATCCA----ATGAA-CCCACATGAGTTTTCAATGGATGTCCAATAAA-----------C-----------C--------TCATTTTATTGTCTGATAAACCCCACCAAAAATGTCTGATACTCTCC-ATGCAGTGGTGTACTT-AGAAAAACAGTTGACTGGTAT--------GTGTTATTTT-----AGTTTT-TGTCAT-TTGACCAAAACAACTTCTT-AG--ACATGAAC-ACAT------CTATCAGAAATACAAGA-G-----------TTTCATAACATTTG-GCTAAGAATGACAGACACAAATCCTGAGGTGTCCGATATTCCCCgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|4 : taatgtggggaaatgttggacacccggggttttccggacaatttgaaaacgtgctatttgcagatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgttAGTTATACGGGGGAATATTGGACACCTGG------GGC------TTTCCATAC--TTTGAAAATA------TGCTATTTGCA-------GTTTTCTGCATGCAC--TA-CA-TTTGTTTTCAGACCCTAT-AAAGC---AGCA-GTTACAGAAACACATCCCGGATAACATTCAAATGTTTATGTACTGAGAGGATAT------------GTGATGACAA---TTTTGATTGCAAGAGAGCAG-TTTGTGTAAACAAA-TTAC-CTTTCACATGTTCGCTCAGATA---GCGCTGGCA---ACAACATTTTTTATCGCA--TTTTCAATACA-AAACAGAAAGGTT-AAACTCGTT-TTGCAGTTAACGATTTTGCG--TTTATGTGACAAAATAAATT-GTGTTGAATGAGAAATTGAATCAAATATATG----TTTTATATTATTATAAACAATAA-TTTAAATAAAAGTA---------CGATAAACC--CCTGT--TGAATAATTCAATAAACTGTCTG----ATGAACCTCACATAAGATTTT---------------AA-----------TATCCGTTAAGAC--------CCATTTTGTTGTCCGTTAAACCCCAC--AAAA-GTCTGATTCTCCCC-ATGTATTGCAGTACTTGAAAAAAACAGTTGATTGATAC--------AAGTTGTTCTATCCAAATTTCATAACAC-GTGGCCAcata
gi|4 : aaATACAAGTTGTTCTATCCAAATTTCATAACACGTG-GCCAAGCAAGACGGACACAAATCGTAAGGTGGCAGATATTCTCCagcaagacggacacaaatcgtaaggtggcagatattctcccatatattactctagtgttcacatga
gi|5 : aaagttatacgggggaatattggacacctggggctttccatactttgaaaatatgctatttgcagttttctgcatgcactacatttgttttcagaccctataaagcagcagttacagaaacacatcccggataacattcaaatgtttatgtactgagaggatatgtgatgacaattttgattgcaagagagcagtttgtgtaaacaaattacctttcacatgttcgctcagatagcgctggcaacaacattttttatcgcattttcaatacaaaacagaaaggttaaactcgttttgcagttaacgattttgcgtttatgtgacaaaataaattgtgttgaatgagaaattgaatcaaatatatgttttatattattataaacaataatttaaataaaagtacgataaacccctgttgaataattcaataaactgtctgatgaacctcacataagattttaatatccgttaagacccattttgttgtccgttaaaccccacaaaagtctgattctccccatgtattgcagtacttgaaaaaaacagttgattgAGTCATGTTGGGGAATATC----ACCTGG------GGT------TTTCCGAACGATTTGAAAATG------TGCTTTTTGCA-------GCTCTTTGCATGTAC--TA-CA-TTAGTTTTTAGACCCTATCATAGC---AACA-GGTACAGTAACACATCCCGGATAACAT--GGGTGTTTATGTACTGTGACGATAT------------GTGATAACAA---TTTTGATTCGAAGAGGGCAG-TTCGTGTTAACAAC-CTCC-CTCTCGCTTGTTCGCTCAGATA---CA-CTGGCT---A----TTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTATGCGGATTTTTTTTACATAATAAATT-GTGTTGAATATGAAATTGAAACAA--ATGTATGC--TTTATTTTATTATAAACAATCA-TTTAAATGAAAATAAAAG-TGTCCAATAAACC--CCTGT--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCTAATGAGATTTC---------------AATGT--------C-----------CGATAAACGCCATTTTGTTGTCCAACAAACCCCAC--AAAACGTCCAATACTCCCG-ATATAGTGTAGTACTT-ATAAAAACAGTTGACTTGTAT--------G---TGATCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATTAAC-ATAT------CTATCGAAAATATACGA-GTC-Tcatatattactctagtgttcacatga
gi|6 : gAGTAATGTTGGG-AATATCGGACACCCGA------G-T------TTTCCGGACAATTTGAAAATG------TGCTATTTGCA-------GCTATCTGCATGTAC--TA-CA-TTTGTTTTCAGACCATATCAAACC---AGCC-AGAATATTAACACATCCTAGGTAACATAGGGGTGTTTATGCACC------ATA----------------ATGACAA---TTTTGATTGGAAGAGAGCGG-TTTGTGTAAACAAG-TTTTTCTCTCACATGTTCGCCCAGATA---GAGATGGCA---ATATTTTTTTATATAGCA--TTTTCAACATG-AAACAGAAAGGTT-GAACTTGTT-TTACAGTTATCAGTTTTGCA--TTAATTTGAAGAAATAAATT-GTGTTGAATAAG-AATTGAAACAA--ATGTATGCTTTAT-TTTTGTTATAAACAATGA-TTTAAATGAAAATAAAA---GTCCATTAAACC--TCTGA--TGAATAATTCAATGAGCTGTCTG----ATGAACCCCACATGACATTTC---------------AA-----------------------------------------TGTCTGATAAACCGCAC--AAAACATCCGATACTCCTA-ATGCA-TGCTGTACTT-TGAAAAACAGATGAGTTGTAT--------GTGTTGTTCT-----AGTTTCACGCTAT-TTGATCAACACAACTTCTC-GG--ACATAAAC-ATgaat
gi|7 : AAAATA------TGCTTTTTACA-------GCATTCTGCATGTAC--TA-CA-CTTATTTTCATACCTTATTGAAGCTGAAGATAGGTACGTTAGCACATCCTAGA-AACATGTTGTTTTTTTTTTACCGTGACTATAC------------ATGACAGCCC---TTTTGATTGGAAGAGAATAG-TTTACATAAACAAG-TTTC-CTTTCACGTTTTCACCAAGATA---GAGCTGGTGCAAAAAA---TTTATATAGCA--TATTCAACATGAAAATAGAAAGGTT-AAAA-AGTA-TTAAGGTT-TAGATTTAGCA--TTTATTTGATAAAATGAATT-CTGTTGAATATGAAATTGAAAC----ATATATGA--TTTATTTTATTATACACAACAA-TTTAAAGGAAAATAAAAG-TGTCCGATAAACC--CCTGCTTTGAATTACTAAACAtaaacatatctatcta
gi|8 : aaataaagtagacgaaaccacatgtggcttactatatTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAATG-TATCTGATAAGCT--CCTGA--TAACTAATT----AAGCTGTCTGTCAGATGAACTGAGCATGAGATTTCCATGTCTTATG----AA-----------C-----------C--------CCATTTTGTTGTCCAATAAACCCCAC--AAAACATCCATTACCTCCC-ATGCAGAGGTGTACTT-AGAAAAACAGTTGAGTGGTAC--------ATTTTGTTCT-----AGTTTTATGCCAT-TTTACCACCACAATTTCTA-GGATATATAAACAAAA-------TTATGGCAAATACAAAA-GTT-TATCCAAATTTCATTATATTTGCACC--TCAAGACGGACACAAATCCTATGATGTCCGATATTCCCCgtgattgaaattcctaaccataattttaat
gi|9 : cgAGTAATGTGGGGGAATATCTAACACCTTG------G-T------TTTCAGGACGATTTGAAAATG------TGTTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGATCCTACCAA-GC---AGCG-GGTACAGTAACACATCCCAGATAACATACGGGTGATTAAGTACCATGTCAATAT------------GAGATGACAA---TTTTGATTGGAAGAGAGCAG-TTCATGTTAACAAGTTTTT-CTCTCACATGTTCCCTC----A---GCGCTGGCG---ATAATTTTTTATATCGCA--TTTTCAACAAT-AAACAGAATGGTT-TATCTGGTTGTTACAGTTACCAATTTTGTG------TTGGATGAAATAAATT-GTGTTGACTAAGAAAGTGGAACAAATATcatattactctaattatatgttaataatttctttgagaa
blockSeqs : G GGTGGGGGG C G CTAGTA A AATTATA CT T C TGA TAGG A ATATATATACCG ACA T AC T T TCT A CAA T AT A A A G A GAT TA CA . A A ATGCT T . . CTT T TCAG T AATGGATGTCCAATAAACC CA C TA G TCAAGGGAT ATCCA A C A AT A CAGAT T C A C
blockSeqs : G GGT T A . A . . . . . CAA G C . . AC . . . A . A . . . A . A T TA TG . T A ATGCT . . . A C . A AATGTCCAGTAAACC . . GT . C . . C . . . CAT . . G .
blockSeqs : A GGT T A . G . . . . . TGA A . . . AT . . . G . T . . . C . A T TA TG . T A ATGC . . . A T . A AATATCCGTTAAGAC . . GT . C . . C . . . TAT . . A .
blockSeqs : G GGT C G . A . . . . . CAA G . . . GT . . . A . T . . . C . A T TT CA . A A ATGA . . . A T . A AATGTCCGATAAACG . . GT . A . . C . . . TA . . A .
blockSeqs : T GGC C A . A . . . . . AGT G . . . TT . . . C . C . . . C . A T AA CA . A A GCT . . . T T . A CATGTCTTATGAACC . . CA . T . . A . . . AA . . . .
blockSeqs : G GGT C A . A . . . . . AGG G . . . GT . . . A . T . . . A . A T TA AG . T . T . . . T T . T AACC . . TA . C . . C . . . T . .
blockSeqs : G GT C G . T . . . . . CAG A . . . GT . . . A . T . . . C . . . . TA . A . G . . . A T . A AA . . CT . T . . A . . . . .
blockSeqs : G GT A A . A . . . . . GGG A . . . GT . . . A . . . . . . . . . . TG . T . . . . A C . G . . . GT . T . . C . . .
blockSeqs : T G . G . T . . . . . C A . . . AC . . . C . . . . . . . A . . . . C . .
blockSeqs : . . . . . A . . . . . . . . . . AT . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : GGT************ ATGCT ** AATGTCCATAAACC*********************************** CAT******
originalCons : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTC---------------AA-----------C-----------C--------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ATA-------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
finalCons : AGTAATGTGGGGGAATATCGGACACCCGGGGT------------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTCAATGTCCATAAACC-----------------------------------CCATTTTGTTGTCCGATAAACCCCAC--AAAACGTCCGATACTCCCC-ATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACATGAAC-ACAT------CTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTTGGAGGACAGGTTTGTTGCATAACTCTTTTGAGAA
Alignments
lowQualScore : 111111111111111 1111111 1111 222222222222 22222 444444444444444 111111 222222222222 111111111 11111 1111111 222222222
lowQualScore : 2 555555555555555 1 1 888888 1 0000000 44 3 3 555 1111 1 0 000000000000 555 3 66 3 3 666 3 666 5 55 4 4 1 4 1 0 0 666 11 33 4 1 22222 4 4 4 55 999 1 0 9999 0 1 111111111111111 66 222222 222222222222 0 22 4 555555555 00000 4 1 66 66 4444444 222222222 5 5 2 6 0
lowQualScore : . ............... . . ...... . ....... .. . . ... .... . . ............ ... . .. . . ... . ... . .. . . . . . . . ... .. .. . . ..... . . . .. ... . . .... . . ............... .. ...... ............ . .. . ......... ..... . . .. .. ....... ......... . . . . .
lowQualScore : 0 888888888888888 2 8 888888 8 0000000 66 3 3 888 7777 8 4 444444444444 888 3 44 3 3 444 4 444 8 55 4 4 1 4 9 8 9 222 66 55 0 4 44444 8 4 0 55 000 3 7 4444 1 1 666666666666666 11 888888 888888888888 1 00 4 999999999 00000 0 1 33 11 4444444 333333333 0 7 2 7 7
consensus : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTCA----ATGTCC-A-TAAACCCCATTTTGTTGTCCGATAAACCCCAC--AAAAC------GTCCGATAC------------TCCCCATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACA-------TGAACA------T--ATCTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
Reference ( family-1315 ) : AGTAATGTGGGGGAATATCGGACACCCGG------GGT------TTTCCGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCC-GGTACATTAACACATCCCGGGTAACATACGGGTGTTTATGTACCGTGACGATAT------------GTGACGACAA---TTTTGATTGGAAGAGAGCGG-TTCGCGTAAACAAG-TTTC-CTCTCACGTGTTCGCCCAGATA---GAGCTGGCG---ACAATTTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTTTGCG--TTTATTTGACGAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATATATATGCTTTTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAAAG-TGTCCGATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCACATGAGATTTCA----ATGTCC-A-TAAACCCCATTTTGTTGTCCGATAAACCCCAC--AAAAC------GTCCGATAC------------TCCCCATGCAGTGNNGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACA-------TGAACA------C--ATCTATCGGAAATACAAGA-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACGGACACAAATCCTAAGGTGTCCGATATTCCCC
gi|1 : AGTAATTTAGGCATATATCAGACACCTGATGTCATGGT------TTTCTGGACGATTTGAAAATG------TGCTATTTGCA-------GCTTCCTGCATCTAG--TA-CA-TTTGTTTTCAGACCCTATCAAAGC---AGCG-GATACGT-AACACATCCTGGATAATATACAGGTGTTTATGTACTGTGACAATAT------------GTGATGACAA---TTTTGATTGGAAGAGAACGG-CTCTGGTAAACAAG-TTTC-ATCTCACATGGTCGCTAAGATA---GCACTGGCG---ACAATTTTTTAAATCGCA--TTTTCAACATG-AAACAGAAATGTT-AAACTGGTT-TTACAGTTACCGATTTTCAG--TTTATTTGATAAAATAAATTAATGTTGAATAAGAAATTGAAACGAATATA-ATG--TTTTATTATATTATG---AATAA-TTC-AAT--------AAGCTGTCTGATGAACCAACATGA----GAT--TTCAA-----TGTCCG----AT------------AGAT----------------------CCTACTTTGTTGTCCATTAAACCCCAC--ACAAC------GTCTGATAC------------TCCCCAAGTAGTGCAGTATTT-CGTAAAAAAATCGACTGGTAA--------GTGTTGTTCT-----AGTTTCACGCAAT-TGGACCA--AC-ACTTCTT-GG--TCA-------CGAACATAATATT--ATCTATCAAAAATACAAGA-GTT-TATCTGATTTTCATAGCATTTG-GCTAAGCAAGACATACACAAATCTTAAGGTGTCGGTTATT
gi|10 : TTGCG--TTTATTTGACAAAATAAATT-GTGTTGAATAAGAAATTGAAACAAATGTAT--GCTTA--ATTTTGTTATAAACAATAA-TTTAAATGAAAATAA--G-TGTCCTATAAACC--CCTGA--TGAATAATTCAATAAGCTGTCTG----ATGAACCGCTCATGAGATTTCA----ATGTCC-AGTAAACCCCATTTTGTTGTCCGATAAACCCCAC--AAAAC------GTCAGATAC------------TTCCCATGTAGTGTAGTACTT-AGAAAAACAGTTGACTGGTAC--------GTGTTGTTCT-----AATTTCACACCAT-TTG---ACCACAACTTCTCAAG--ACA-------TGAACA------T--ATCTactgattaccccatattact
gi|11 : ATTTGAAAATG------TGCT-TTTGCA-------GCTTTTTGCATGTAC--TA-CA-TTCGTATTCAGAACCTATCAATGA---AGCC------ATTAACTCATCCCAGTTAACATACGGGTGT------ACCCTAGCAATAT------------GTGACAACAA---TTTTATTTGGAAGAGA--------------ACAAG-TTTC-CTCTTATGCGATCGCCCAAATA---CAGCTGATG---ACAATTTTTTATATTACAATTTTTTAATGCG-AAACAAAAAGGTTAAAAATGGTT-TTACAGTT-------------------------AAAT----T-GTGTTGAATATGGAATTGAAACgaaacatttggcgaagcaagatattcccccatattactc
gi|12 : AGTATTATGTGAGAAGATCGGATGCTCGG------GGT------TTTCCGGATGATTTGAAAATACTAGTATGCTATTTACA-------GCATTCTGCATGTACCTTATCA-TCC-TTATCAGACCTTATCAAAGC---AGAC-AATAAATTACCACATTCCGGGTAACATACTGTTGTTTATGCACCGTGATGATATATATATATACCGGTAATATCAA---TTTTGATTGGAAGAAGTTGG-TTCACATGAACAAG-TTCC-CTC
gi|13 : ATAAAAG-AAACTGA--AACT--CATG---TCAGTAATTCAACAAACTGTCTG----ATGAACCCCACA--AGATTT
gi|13 : TGTCTGATGAACCCCAC--AAGATTTTCAGGGCCGGTACAGGACAGATTCTCCCCCATGCAATGGTGTACAT-AGAAAAACAATTGACTAACAC--------ATATTGTTCT-----CTTTTTA-ACCATATTTACCACCAAAACTTCTC-AG--ACA-------TGAACA------CAGATCTAACAGAAATAGAACA-Gtcagggccggtacaggacagattctcccccatgcaatggtgtacatagaaaaacaattgactaacacatattgttctctttttaaccatatttaccaccaaaacttctcagacatgaacacagatctaacagaaatagaacagatctaacaga
gi|14 : ataaaagaaactgaaactcatgtcagtaattcaacaaacGGGGAACATGGGATATCCAG------GGTGGGGGG-----GGACAATTTCAAAATG------TGCTATTT-----------CTTTCTGCAAGTAC--TA-CA-TTTGTATTCAGACTCTATTAAAG-------------CATTAACACATCCC-GGTAACATACGGGTGTTTATGCACCGTGACatctaacaga
gi|15 : aatAGCACATCATATGAAATATACGAGTGTTTATATAACATGACAATAT------------ATGGCGGCAA----TTTGATTTGAAGAGAGCAGTTTCACACAAATAAG-TTAT-TATTCAAATTTTCAATGAGACATCTG-GCTGGTG---ACGAATATTTAagttgactggtatcaaggg
gi|16 : ataatacgcaaggataaacCAGTTGACTGGTATCAAGGGATGTGTTGTTTT-----AGTTTTACGACAT-TGGACCACC--------T----------------TAAAAA------T--ATCTGTCGGAAATACAGGA-GTT-TATCTAAATTTCATAACATTTG-GCCAAGCAAGCCAGACACAAATCCTaa
gi|17 : AGTAATACGCGAGAATATCAGACACATAC------G--------TTTCTGGACAATTTGGAAATA------TGCTGTTTATAAATTATAGTGTTCTATGTGTAA--TA-CACTTTGTTTTCAGACCCTATCAAAGC---AGAT-GACACATTTAC
gi|18 : gAGTAATTTGGGGGAATATTGTA-----------------------------A-GATTTGAAAATG------TGCTATTGACA-------GCATTCTGCATGTAC--TT-CA-TTTGTTTTCTGACCCCATTAAAGC---A
gi|2 : agAGTAATGTGGGGGAATAGCTGACACCCGG------GGT------TTTCTGGACAATTTGA----------------TTTGCA-------GCTTTCTGCATGAAC--TA-CA-TTT-TTTTCAGACCCTATCAAAGC---AGCC-AATACATTAACACATCCCGGGTAACATATGGGTGTTTATGCACCGTGACGACAT------------GTGACAACAA---TTTTGATTGGAAGAAAGCGA-TTTATGTAAACAAA-T-----------GTGTTCGCCCAAATC---GAGCTGGTG---ACATTTTTTTATATTGCA--TTTTCAACACA-AAACAGCAAGGTT-AAAATGGTT-TTACAGTTATTGATTTTGCA--TTTATTTGATGAAATAAATT-GTGTTGAATATGAAATTGAAACAAATATATATGCTTTTTTTTTTATCATAAACAATAATTTTAAATGAAAATAAAAG-TGTCTGATAAACC--CCTGA--CGAATAATTCAATAAGCTGTCTG----ATGAACCCCACATGAGATC------------------AACCCCATTTGGTTGTCTAATAAACCACAC--AAAAC------GTCC--TAC------------TCAAAATGTGGTGGTGTACTT-AGAAAAACAGATGATTGGTAA--------GTGTTTTTCT-----AGTTTTACACCAT-TTGACCACCACATCTTCTC-GG--ACA-------TAAACA------T--A--CATCGGAAATACAAGT-GTT-TATCCGAATTTCATAACATTTG-GCCAAGCAAGACAGACACAATTCCTTAGGTGTCCAATATTCCCC
gi|3 : TAATGTGGGGAAATGTTGGACACCCGG------GGT------TTTCCGGACAATTTGAAAACG------TGCTATTTGCA-------G
gi|3 : ATATC-----------GTTACGGTAAACATTTT---TGCAAGACAGCGG-TTCGTGTAAATAAG-TTTT-CCCTCGTGCGTTTACTCAGATA---GGGATATCT---GCAA------ATAGCACG--TTTTCAAatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgtttaccgtaacgatatgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|3 : taatgtggggaaatgttggacacccggggttttccggacaatTACCGTAACGATAT------------GTGACATCAA---TTTTGATTGGAAGAGAGCGG-TTCTTGTAAACAAG-TTTC-CCCTCATGTGTTCGCCCTGATT---GAGCCGACG---GCAATTTTTTATATCTCA--TTTTCAATACG-ACACAGAGA----------GGTT-TAACAGTTATCG-TT-----------TTTGATGAAATTAATT-GTGTTGAATAAGAAAGTGAATCAAATATAT----TCTTTATCTTATCATAAACAATAA-TTTAAATGAAAATAAAAG-TGTTTGATAAACC--CCTGA--TTAACAATTCAATAAGCTATCCA----ATGAA-CCCACATGAGTTTTCAATGGATGTCCAA-TAAACCTCATTTTATTGTCTGATAAACCCCACCAAAAAT------GTCTGATAC------------TCTCCATGCAGTGGTGTACTT-AGAAAAACAGTTGACTGGTAT--------GTGTTATTTT-----AGTTTT-TGTCAT-TTGACCAAAACAACTTCTT-AG--ACA-------TGAACA------C--ATCTATCAGAAATACAAGA-G-----------TTTCATAACATTTG-GCTAAGAATGACAGACACAAATCCTGAGGTGTCCGATATTCCCCgtgacatcaattttgattggaagagagcggttcttgtaaacaagtttcccctcatgtgttcgccctgattgagccgacggcaattttttatatctcattttcaatacgacacagagaggtttaacagttatcgtttttgatgaaattaattgtgttgaataagaaagtgaatcaaatatattctttatcttatcataaacaataatttaaatgaaaataaaagtgtttgataaacccctgattaacaattcaataagctatccaatgaacccacatgagttttcaatggatgtccaataaacctcattttattgtctgataaaccccaccaaaaatgtctgatactctccatgcagtggtgtacttagaaaaacagttgactggtatgtgttattttagtttttgtcatttgaccaaaacaacttcttagacatgaacacatctatcagaaatacaagagtttcataacatttggctaagaatgacagacacaaatcctgaggtgtccgatattcccccata
gi|4 : taatgtggggaaatgttggacacccggggttttccggacaatttgaaaacgtgctatttgcagatatccctatctgagtaaacgcacgagggaaaacttatttacacgaaccgctgtcttgcaaaaatgttAGTTATACGGGGGAATATTGGACACCTGG------GGC------TTTCCATAC--TTTGAAAATA------TGCTATTTGCA-------GTTTTCTGCATGCAC--TA-CA-TTTGTTTTCAGACCCTAT-AAAGC---AGCA-GTTACAGAAACACATCCCGGATAACATTCAAATGTTTATGTACTGAGAGGATAT------------GTGATGACAA---TTTTGATTGCAAGAGAGCAG-TTTGTGTAAACAAA-TTAC-CTTTCACATGTTCGCTCAGATA---GCGCTGGCA---ACAACATTTTTTATCGCA--TTTTCAATACA-AAACAGAAAGGTT-AAACTCGTT-TTGCAGTTAACGATTTTGCG--TTTATGTGACAAAATAAATT-GTGTTGAATGAGAAATTGAATCAAATATATG----TTTTATATTATTATAAACAATAA-TTTAAATAAAAGTA---------CGATAAACC--CCTGT--TGAATAATTCAATAAACTGTCTG----ATGAACCTCACATAAGATTTTA----ATATCC-GTTAAGACCCATTTTGTTGTCCGTTAAACCCCAC--AAAA-------GTCTGATTC------------TCCCCATGTATTGCAGTACTTGAAAAAAACAGTTGATTGATAC--------AAGTTGTTCTATCCAAATTTCATAACAC-GTGGCCAcata
gi|4 : aaATACAAGTTGTTCTATCCAAATTTCATAACACGTG-GCCAAGCAAGACGGACACAAATCGTAAGGTGGCAGATATTCTCCagcaagacggacacaaatcgtaaggtggcagatattctcccatatattactctagtgttcacatga
gi|5 : aaagttatacgggggaatattggacacctggggctttccatactttgaaaatatgctatttgcagttttctgcatgcactacatttgttttcagaccctataaagcagcagttacagaaacacatcccggataacattcaaatgtttatgtactgagaggatatgtgatgacaattttgattgcaagagagcagtttgtgtaaacaaattacctttcacatgttcgctcagatagcgctggcaacaacattttttatcgcattttcaatacaaaacagaaaggttaaactcgttttgcagttaacgattttgcgtttatgtgacaaaataaattgtgttgaatgagaaattgaatcaaatatatgttttatattattataaacaataatttaaataaaagtacgataaacccctgttgaataattcaataaactgtctgatgaacctcacataagattttaatatccgttaagacccattttgttgtccgttaaaccccacaaaagtctgattctccccatgtattgcagtacttgaaaaaaacagttgattgAGTCATGTTGGGGAATATC----ACCTGG------GGT------TTTCCGAACGATTTGAAAATG------TGCTTTTTGCA-------GCTCTTTGCATGTAC--TA-CA-TTAGTTTTTAGACCCTATCATAGC---AACA-GGTACAGTAACACATCCCGGATAACAT--GGGTGTTTATGTACTGTGACGATAT------------GTGATAACAA---TTTTGATTCGAAGAGGGCAG-TTCGTGTTAACAAC-CTCC-CTCTCGCTTGTTCGCTCAGATA---CA-CTGGCT---A----TTTTTATATCGCA--TTTTCAACACG-AAACAGAAAGGTT-AAACTGGTT-TTACAGTTATCGATTATGCGGATTTTTTTTACATAATAAATT-GTGTTGAATATGAAATTGAAACAAATGTAT--GCTTT--ATTTTATTATAAACAATCA-TTTAAATGAAAATAAAAG-TGTCCAATAAACC--CCTGT--TGAATAATTCAATAAGCTGTCCG----ATGAACCCCTAATGAGATTTCA----ATGTCCGA-TAAACGCCATTTTGTTGTCCAACAAACCCCAC--AAAAC------GTCCAATAC------------TCCCGATATAGTGTAGTACTT-ATAAAAACAGTTGACTTGTAT--------G---TGATCT-----AGTTTCACGCCAT-TTGACCACCACAACTTCTC-GG--ACA-------TTAACA------T--ATCTATCGAAAATATACGA-GTC-Tcatatattactctagtgttcacatga
gi|6 : gAGTAATGTTGGG-AATATCGGACACCCGA------G-T------TTTCCGGACAATTTGAAAATG------TGCTATTTGCA-------GCTATCTGCATGTAC--TA-CA-TTTGTTTTCAGACCATATCAAACC---AGCC-AGAATATTAACACATCCTAGGTAACATAGGGGTGTTTATGCACC------ATA----------------ATGACAA---TTTTGATTGGAAGAGAGCGG-TTTGTGTAAACAAG-TTTTTCTCTCACATGTTCGCCCAGATA---GAGATGGCA---ATATTTTTTTATATAGCA--TTTTCAACATG-AAACAGAAAGGTT-GAACTTGTT-TTACAGTTATCAGTTTTGCA--TTAATTTGAAGAAATAAATT-GTGTTGAATAAG-AATTGAAACAA--ATGTATGCTTTAT-TTTTGTTATAAACAATGA-TTTAAATGAAAATAAAA---GTCCATTAAACC--TCTGA--TGAATAATTCAATGAGCTGTCTG----ATGAACCCCACATGACATTTCA----A-----------------------TGTCTGATAAACCGCAC--AAAAC------ATCCGATAC------------TCCTAATGCA-TGCTGTACTT-TGAAAAACAGATGAGTTGTAT--------GTGTTGTTCT-----AGTTTCACGCTAT-TTGATCAACACAACTTCTC-GG--ACATAAACATTAAACA------T--ATCTATCgaat
gi|7 : AAAATA------TGCTTTTTACA-------GCATTCTGCATGTAC--TA-CA-CTTATTTTCATACCTTATTGAAGCTGAAGATAGGTACGTTAGCACATCCTAGA-AACATGTTGTTTTTTTTTTACCGTGACTATAC------------ATGACAGCCC---TTTTGATTGGAAGAGAATAG-TTTACATAAACAAG-TTTC-CTTTCACGTTTTCACCAAGATA---GAGCTGGTGCAAAAAA---TTTATATAGCA--TATTCAACATGAAAATAGAAAGGTT-AAAA-AGTA-TTAAGGTT-TAGATTTAGCA--TTTATTTGATAAAATGAATT-CTGTTGAATATGAAATTGAAAC----ATATATGA--TTTATTTTATTATACACAACAA-TTTAAAGGAAAATAAAAG-TGTCCGATAAACC--CCTGCTTTGAATTACTAAACAta
gi|8 : aaataaagtagacgaaaccacatgtggcttactatatTTATTTTATTATAAACAATAA-TTTAAATGAAAATAAATG-TATCTGATAAGCT--CCTGA--TAACTAATT----AAGCTGTCTGTCAGATGAACTGAGCATGAGATTTCC----ATGTCTTA-TGAACCCCATTTTGTTGTCCAATAAACCCCAC--AAAAC------ATCCATTAC------------CTCCCATGCAGAGGTGTACTT-AGAAAAACAGTTGAGTGGTAC--------ATTTTGTTCT-----AGTTTTATGCCAT-TTTACCACCACAATTTCTA-GGATATA-------TAAACA------A--AATTATGGCAAATACAAAA-GTT-TATCCAAATTTCATTATATTTGCACC--TCAAGACGGACACAAATCCTATGATGTCCGATATTCCCCgtgattgaaattcctaaccataattttaat
gi|9 : cgAGTAATGTGGGGGAATATCTAACACCTTG------G-T------TTTCAGGACGATTTGAAAATG------TGTTATTTGCA-------GCTTTCTGCATGTAC--TA-CA-TTTGTTTTCAGATCCTACCAA-GC---AGCG-GGTACAGTAACACATCCCAGATAACATACGGGTGATTAAGTACCATGTCAATAT------------GAGATGACAA---TTTTGATTGGAAGAGAGCAG-TTCATGTTAACAAGTTTTT-CTCTCACATGTTCCCTC----A---GCGCTGGCG---ATAATTTTTTATATCGCA--TTTTCAACAAT-AAACAGAATGGTT-TATCTGGTTGTTACAGTTACCAATTTTGTG------TTGGATGAAATAAATT-GTGTTGACTAAGAAAGTGGAACAAATATcatattactctaattatatgttaataatttctttgagaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTTGGAGGACAGGTTTGTTGCATAACTCTTTTGAGAA