lowQualScore : 11111111111111 1111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111 11111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 1 222 3333 22 22222 222 22 555555 11 1 11 1 3333 1 1 333 11 55555 6666666 333 2 8888888888 2 6666666 2 2 2 11111111111111 11111 11 1 111 2 3333333 44444 11 333 2222 4444444444 333 22 33333333333 222 2222 333333 2222 777777777777777777777777 2222222222 2222 11 1 2222 1 22 1111 2 33333333 222 77777777777777 1 2222222222222222222222222222222222222222222222222222222222222 1 44 1111 1 11 2222 33333333 11 1 1 1 1 66666666666666666666 11 3333333333 1 8888888888 222 444444444444444444444444444444444444444444 1 22 333333 1 5555 1 88888888888888888 1 1 1 22 1 4444 1 111 2222 1 1 22 2 1 66666666666666666666666666 1 1 22222222 333 2 333 4444 666666666666666 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 1 11 1 333333333 0000000 222 2222 222222 1 1 2 111 22 22 1 222 1 66666666666666 111 4444444 333333 333333 111111 33333 11 2222 11 11 22222222222222222 6666666666666666666666 1 1 55555555 333333333333333333 11 333 11 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1 2
lowQualScore : 22 3 1 000 3 7777 3 77 55555 777 77 222222 33 7 88 4 33 5 7777 5 4 5 4 2 555 00 2 4 4 00000 2 5555555 000 3 3 2 7 7777777777 0 999 4 5555555 0 3 0 0 77777777777777 4 77777 4 2 2 33 3 5 111 6 0 4 4 2 4 3 4444444 55555 88 555 3 4 4444 4 1111111111 2 2 2 55 4 6 555 77 88888888888 7 222 6 8 2222 7 666666 0 8888 7 999999999999999999999999 7777777777 8 0 1 0 9999 0 7 6 1 2222 88 3 8888 11 88 8 5 11 6 55 6 8 7 6 44 1 1111 6 33333333 1 7 1 7 6 77 7 0 8 555 55555555555555 5 6 7777777777777777777777777777777777777777777777777777777777777 6 1 6 5 66 6 7777 6 7 6 22 6 9999 6 44 55555555 0 77 0 11 0 7 88 7 66 99 6 77 6 6 0 6 7 6 5 5 88 33333333333333333333 22 3333333333 7 0000000000 6 6 777 111111111111111111111111111111111111111111 6 7 11 6 000000 6 5 6 5555 6 7 33333333333333333 5 6 5 7 11 5 6 3333 6 7 888 7777 7 5 33 0 3 5 22222222222222222222222222 7 3 6 6 7 88 6 88888888 8 4 3 333 0 000 6 1111 6 6 6 555555555555555 6 6 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 88 44 1 3 99 6 0 222222222 4 5555555 9999 4 333 7777 7 666666 3 4 3 6 77 1 7 55 4 3 5 0 3 777 4 4 11 77 2 2 4 5 888 5 66666666666666 222 3333333 4 888888 3 888888 666666 0 33333 00 0000 77 33 00000000000000000 4 4444444444444444444444 0 2 88 5 00000000 6 000000000000000000 2 6 6 88 666 7 88 3 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 44 7 7 77 7 5 0 2
lowQualScore : .. . . ... . .... . .. ..... ... .. ...... .. . .. . .. . .... . . . . . ... .. . . . ..... . ....... ... . . . . .......... . ... . ....... . . . . .............. . ..... . . . .. . . ... . . . . . . . ....... ..... .. ... . . .... . .......... . . . .. . . ... .. ........... . ... . . .... . ...... . .... . ........................ .......... . . . . .... . . . . .... .. . .... .. .. . . .. . .. . . . . .. . .... . ........ . . . . . .. . . . ... .............. . . ............................................................. . . . . .. . .... . . . .. . .... . .. ........ . .. . .. . . .. . .. .. . .. . . . . . . . . .. .................... .. .......... . .......... . . ... .......................................... . . .. . ...... . . . .... . . ................. . . . . .. . . .... . . ... .... . . .. . . . .......................... . . . . . .. . ........ . . . ... . ... . .... . . . ............... . . . ................................................................................................................................ .. .. . . .. . . ......... . ....... .... . ... .... . ...... . . . . .. . . .. . . . . . ... . . .. .. . . . . ... . .............. ... ....... . ...... . ...... ...... . ..... .. .... .. .. ................. . ...................... . . .. . ........ . .................. . . . .. ... . .. . . ............................................................................................... .. . . .. . . . .
lowQualScore : 00 0 5 555 0 5555 0 55 00000 000 55 555555 00 0 55 0 55 0 5555 0 0 0 0 5 000 00 5 0 0 00000 5 0000000 000 0 0 5 5 5555555555 0 000 0 0000000 0 0 0 0 55555555555555 0 00000 0 5 5 55 0 0 555 0 0 0 0 5 0 0 5555555 00000 00 000 0 0 0000 0 0000000000 5 5 5 00 0 0 000 33 33333333333 0 777 7 3 3333 3 000000 7 3333 7 777777777777777777777777 3333333333 3 7 0 7 7777 7 0 7 0 0000 00 3 3333 33 00 3 0 33 7 33 7 3 0 7 00 0 0000 7 00000000 0 0 0 0 7 00 7 7 3 333 77777777777777 0 0 8888888888888888888888888888888888888888888888888888888888888 0 0 0 0 00 0 0000 0 0 0 00 0 0000 0 55 88888888 2 77 7 77 7 7 00 0 33 33 7 33 0 0 5 0 0 0 0 0 55 55555555555555555555 00 0000000000 0 0000000000 0 0 000 000000000000000000000000000000000000000000 0 0 00 0 000000 0 0 0 0000 0 0 00000000000000000 0 0 0 0 00 0 0 5555 0 0 555 0000 0 0 00 0 0 0 00000000000000000000000000 0 0 0 0 0 55 0 33333333 3 0 0 555 0 555 0 5555 0 0 0 000000000000000 0 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 55 55 5 0 00 0 5 555555555 0 0000000 0000 7 333 3333 7 777777 7 7 7 7 33 0 0 00 0 0 5 0 0 555 0 0 00 55 5 5 0 5 555 5 00000000000000 333 3333333 7 333333 7 333333 777777 7 33333 33 8888 55 88 55555555555555555 7 0000000000000000000000 7 0 00 0 00000000 7 888888888888888888 5 7 7 33 000 3 33 3 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 0 3 77 3 5 0 5
consensus : NNNNNNNNNNNNNNNNCTATTCCAAATAGGAANAAANGGAAAAAGTCCAAGGAATCNCCTNGGGAAANTAAAGTCGGACCTGNATCAAAAGTGAGAAAGGACAANGAAAAAATGGCTNNAAATGGCGCGAGTTCANCNCAANNACCGCANTTTCCCACGCCACAAACNGTCGGGCATGGNGCGAACTTTGGACANCANCNGGCAAGTCAGCCNTTCAATATATNACAGCCTATGACTCCAACGCACCCGCGACCNANTCGCNATTGATGATCAAAATATGGCTATGAATTCNNNGTCNCCAAATTTTCATCANTACACATCAGCGCCGACAAATAATTCGCTACTCAACAACGATATCNTGTCNGTGNTANTNCAAAGGNTNNGCTCCGTGGACCAGAAANCNGTCCACATTAGACACNATTCNGTCGANCGTGNGCGNTATAACGGCGAGGTTGCATTATGGATCAGAATGGATCAACGACACGNAGNGAAATTAGAANGCAAANTNAACGATCTNGAANATANTNNTTCNTTTGACGCTAGCTCAAT-GTGAGCGA-GTTA-CAAAAAACAACAAGAAA--GAAGATTTGGTGANAAAAATGCAA---T-TGAAAAA----GANCAAC---AA----AGT-GGAGGAA-T-AGTT-A-AAAN-CGGATATTACGGACATAAAATGTCGCAGTATGCGCGACAATCTGATGTTTT-NTAA-CTT-CAAGAAGAAAAAGGCGAAAACTGTGACACGAAAATCCTCGAATTTATTGAACATGA-ATTGAAGCTTGTAAATGC-GNAA--CGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCC--TTCA---GTC-------AAGATAAGACCCATCT----GTTGCCAAATNCNCCTATTACCCAGATAGAGAGCGTGT-C-GAAAAG-GTCGGCCAAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAAGCGTTCATAAACATTGATAAACTNTACATTGATAACCATTTGCACANAGGANAGTTTTAAAACTAGNNCTCATGTGAGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAAAAGGAATTAAACTGATAAAAAATGACGNAAGACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTNAGATTCCCGATGATTNNTNATCTCTGTTGT-ACTTNTGTAGCACCTGAAAATTNCCCCGTCCA---TANT-ATGTATGATATTGACATNTTTNGNNAAATTAGAAANNGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTT-CTGT-GAAGATGTAAATGCAAGGATAGGG-AG----AAAATCTGATTGTATTGAAAATGACGGGCCGTTAAATGGTCA-TGATAACTTTGATATT---GATTTANACACCCCGNTACACCCGGGCNACNTNNGACANTGGTAGCTCAAATNGTTTTGGTGANCGCTTGNTNGATTTNTGCAAGTCGCTACNAATATGCGTATNGTCAATGAGCGTCTAGGTTACANCGGG---ATAA-GGTNTAGGTAAANTTACATGCGTNACANATAATGGAGAGAGTNTAGTCGACTACCTGTTGACNNCCCACGANAACGTTGACACACTTGTCCGACTTTNNNGTNCNCGATTTTAATGAGTTCTCCTAAATCACGCNCCAATCGCATNTCCATTCGACACAACGNCTCAATATGATTCACAGT-ATACAAGAAAATAC-------GTTTATTACGAGCGG------AAACCNGAATTTAA------AAACGATANTATAAACGGTATT-----TCTCGAGGTATAAATAAT-TTAGAACAATCGCTGTT--AGATGGCATATATTCAATAACTGTAGTNCTGATG----AGCT-CGTATC-AAT-NTTACTGAATTTATCGAC---AANA-TGNAAATNAATATTTTAAA-CA--TACTGTTAAACCTTCGGGTA--ATTATTTT-T-TGTCAA--ATC-AAAACAAAAATAAGTGGTTTAATAATGAATGTAAAA-TCG-CAA--A--ATANAAGGAATCTATTT-CA---------TT-----GT-TGATATAAATAAAACGGATG-CAACAGG-CA---GTT-ATG-TACAAT-GAACGAGAATTATAAATATTATTGTCGAAAATGTAAATATCGCNTACAATC
Reference ( gi|1 ) : AATATGTGTTGAAACACTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACCAT-----ATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTTATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAACGG--AGA--GCATTA--G--CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAAAATCAACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAAATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTTTGAAAGA----GATCAA----AA----AGTCAAAGAAACTGAGTT-A-AAAA-CAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTT-TTAA-CTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAAAATCAGT-AATGCTGCTA--CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCA--TTCA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACAT---AAAAAG-GTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGA--T---AA-CTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAACAAAA-CTTCAGATATCGACTTCAAAGGGTATA--GTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAAAAGGTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTATTTT-TTAATATTGATGAAGA-TATTTAT-TTGGCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCA---TAAC-ATGTATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAA--ATATTTATTGTAGGAGATATGAAT---AG--TAGAGTAGCTTTAAAAACCGA-TACATAGATAATGACAG------AAA----CATTGAGCAATTTGATTTTCTCAAAGTAGACAATCCAATAC-CTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAAGGTTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCTGTTAACGGCCCACAATAACTTTGACACACTT-TCAGATTTTTGTGTTCACAATTTTAACGAATTCTCC--AATCATGCCCCAATCACATTTTCATTCGATATAACGCCTCAATATGAATCAC-GTGATACAAGAGAATAC-------ATTTATTACAAGTGG------AAACCCGAATTTAA------AAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGAT-TTAGCACAATCGCTATT--AGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTATCGAGT-CTCACTGACTTCATGGAC---AAAAATGCAAATAAATATTTCAGG-CA--TACTGTTAAACCTTCGGGTA--ATTATTTT-TTTGTCAA--ATC-AAAACAAAAATAAGTGGTTTAATGATGAATGTAAAACTCGCCAATCACTATACAAGGAATATATTT-TA---------TT-----GTATAATATAAATAAATCGGATGCGAACAGG-CA---ATTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCG
gi|4 : CTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACCTT-----ATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCATTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG--AGG--GCATTA--G--CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAAACTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAAATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTTTGAAAGA----GATCAA----AA----AGTC-AAGAAACTGAGTTAA-AAAA-CTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTTAC-TTTTT-TTAA-CTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGTGGTAACAATCAGT-AATGCTGCTA--CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCA--TTCA---ATC-------
gi|3 : AAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAATT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTGCATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAAAA-CA------TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA-TAATGTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA------TGAAAAAATATGAGCAAT---AACGACAGTGGGAGGA--T-AGTT-ATAAGT-TGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAA-CTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGAAGCTTGTAAATG--GGAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCATC-----GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGT---GCGAAA-ATCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAccgtcca
gi|5 : atataattgaaaattgtcatgttaCAAT-GTGAGC---------AAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAATATGAACAA----GAACAACGACAG----AG--GGAGGAA---AGTT-A-TAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTT-ATAAACTTCCA-GAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGAAGCTTGTAAATGCGGAAG--CGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCC--TTC-----TCTAATGAAAAGATAAGACCCATCT-----TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTC-AAAAA---TCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACA--TTTAAA-CTAGGACTCATGTGAGAGTG
gi|12 : gcaatnnnnnnnnnntgagattggacaatatggatcagaagatcaacaacatggagagaaaaatgcaggacattgaaaatagtcgtacttttgatgctagcataattgaCAGATAGAGAGCGTGTGCCAAAATGAGCCG----AGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTT---AAATTAGTTTTCATGTGAGAGTGtt
gi|17 : tattaccGTCGGA----CATGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTATCAGGAttt
gi|2 : GATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAAAAGGAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTT-TTCAGATTCCCGATGA-TTATTATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCA---TGCT-AGGTATGATTTTGATATATTTCGCA-AATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTT-CTGT-GAAGATGTAAATGCAAGGATAGGG-AG----AAAATCTGATTGTATTGAAAATGACGGGCCGTTAAATGGTCA-TGATAACTTTGATATT---GATTTATATATTCTGA-------GGGCAACCTCAGACAGTGGTA---CAAATAGTT-TGGTGAGCACTTGATAGATTTATGCAAATTACTACAAA--TGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCATA----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGA
gi|14 : actatcgcagcaacagaaatcaaattctATAAAAAATGAC-AAAAACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGATTATTAAT-TTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTAGCAATGAATTATATAttatctcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|18 : aagccagacatcctataataatctattcacacaagtgtcaaaaattcaattgA---TAAT-ATTTATGATATTGACATTTTTAGACAAATT-GAAAATGATATTAA-TATT
gi|13 : GACACCCCATTACACCCG-GCTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAA
gi|6 : ttaaagataaggagctatttatgtgacaggggacaccaattcatgggttggccgtaaaaaagattttattgtcaatgtttgtatccttgacaatgatgacgtatatgacattGGTTATACAACG---ATAAGAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCTATTGACTTCCTATGAAAATTTTGAT-CATTTGTCCAACTTTGAAGTACTTGATTTTAAT-AGTTTTTTTAAATCATGCACCAATAGCATATCC-TTTAACACAATGA--CAA-AT---TTACAGT-ATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAACG---TTA--ACAACCGAGATTTCCGTTGGCA--------------GTAATGCTGATGTTTTGGTT-AATAT----T-TTTACTGAATTT-TTGACTGTAAGA--GGAAACTAGTATTTTAAA-CA--AACT-TCAAAACTT-AAACACCATTATTTTATGTG-CAAGGATG-AAAACAAACAAAAATGGTATAATAATGAATGTAAA------CAA-------AAAAAAAAGATATTTATAAAAACGCAGTTTACAAGTTTAATTTAAATAAAACTGAAAATAATAGATTAAATATTTATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAc
gi|11 : ggacGTTACATCGGG---ATAATGGTTTAGGTAAAATTT-TTGCGTAACACATAATGGACAGAGCCTAGTTGACTACCTGTTAACGGCCCACAATAACGTTGACACACTT-TCAGATTTTTTTGTTCACAATTTTAATGAATTCTCC--AATTACGCCCCAATCACATTTTCATTCGATATAACGTCTCAATATGATTCAC-G-----CAAGAAAATAC-------ATTTATTACGAGCGG------AAACCCGAATTTAA------AAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAAT-TTAGAACAATCGCTGTT--Aaaataattttaatagagatcaaag
gi|15 : CAAGTAAACAA-------GTTTATTACTAGTGT------AAACCAGATTTTAA------AAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAAT-ATATCAGAATTATCGCTATC--AGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAATACTCACTGATTTTATTGAC---AATACTGAAAAT--------------G--TACTGTTAAACa
gi|10 : ATAAATAAT-TTAGAACAATCGCTGTT--AAAat
gi|9 : AGTTCAGATG----ATCT-TTTATCGAAC-ATTACTGCATTCATCGAC---TTAA-TGCAAATCAATATTTCAAG-CA--TACTGTTAAACCCTCGGGTA--ATTATTTT-T--GTCAA--ATCTAAAAAAAAAATAAGTCGTTTAATAATTAATATAAAA-TCG------AC-ATATAAG-AATCTATTT-CA---------TT-----ATATGATATAAATCGAACGGATGCCAACAGG-CA---GTTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCcttcgggtaattattttttgtcaaatcaaaacaaaaataagtggttaaaggatgaatgtaaaactcgccaatgaatatacaaggaatctattttataaataaaacggattacaatcgaaaaagaattataaatattattgcagaaaatgtaaatatgcgtacaatcagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|10 : ATAAATAATTTAGAACAATCGCTGTTAAAC-TTCGGGTA--ATTATTTT--TTGTCAA--ATC-AAAACAAAAATAAGTGGTTAAAGGATGAATGTAAAACTCGCCAATGAATATACAAGGAATCTATTT-------------------------TATAAATAAAACGGAT-----------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCagaagatagaatataaaaatgaaggaaataagacgtaagcagccgaataaattctggaatttgtttaaaaacgcaaaaatcagagccacagcgacaaacaattagacaaattctatg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TAAGACAATGCGTCAAATATTTCGACACTAATGTAATTTTGATACAGTAATGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCTAATCACGCGGCGATTTTCTTCGGAATAGAAATATTGTAATGAACTCTACCTTATAAAACCCGAGAACACATATCTGGCACGTGAAAAAATAAACTTGCTTCCATAAACGAAATAACGGTAATATTGATATTGTTGTGAAGATTTTAATAATTGTAAGAACAGCAATTGCGACCTCGACGATATGTTTAACAATATGAATATCTTCCAGAGAAAGGTAATAGATGTGAAACGCGACATAAAATGCCAGTACAAGCACATTCCATAAACAAATGTAATGTATTGAATAACAAATAATATTATATTATCACGAATGCAAATGAAATCTTAATATATACAGGCAGTAAGTGTGTGGTTTTAATTTAAGTAGGACTGCTGAACATAAACCACATCATGATAAATTAAAAGATTATGAATAGCATTGCAGAATACTTAAAAGTAGATATAACAGATGAGTAACAAATGAATGCAATAAAA
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|16 ): TTAAGAGATAAGGGGGCTATTTATGTGACAGAGATCACCAATTCACGGGTTCGGCGTAAAAAATATTTTATTGACAATGATCGTATCCTTGACGACGATGACGTATATAACATTGACACCCCATTACATCGAGCTATTATATAATT
Unaligned ( gi|19 ): GTATTGATAACCATTTGTACAGAGGAAATTTAAACTCATGTGATAGTGTTTA
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 11111111111111
lowQualScore : 3333 33 22222 2 33 555555 3333 333 44444 6666666 33 1 8888888888888 6666666 2 2 2 11111111111111 2 1 333333 22222 11 2222 2222 3333 222 66666666666666666666 11 333 1111 7777777777 2222 4444444444444444444444 222 1 1 11111 1 1 222222 111 44444444444444 444444 333 222 1 5555555555 55555555555555555555555555555555555555555555555555555555555 2 222 1 2 2 11 55555 111 2 222 77777777777777777777 222222 22222 1111 1 2222 11 2 11 2 2 222 11 4444444 1 222222 2222 1 222 3333333333 22222222 333333333 3333 1 2222 22222 22222 2 33 3333 444444444 4444444444 22222 4444444444 22222 111 333333333 222222222 11 11 11 1 11 1 66666666666666 1 777777777777777777777777 1 8888888888888888888888888 33 2
lowQualScore : 77 1 1 88 0 1 7777 1 00 0 99999 3 00 222222 22 0 0 1 1 22 6 8888 0 888 11 6 0 1 0 777 1 1 1 0 22222 1 0 5555555 0 0 0 0 00 1 1 0 1 5 0 9999999999999 333 1 5555555 3 1 3 3 33333333333333 11 11 0 1 11 1 1 1 22 0 77 6 1 1 3 0 1 1 1 0 1 11 5 222222 66666 88 3333 1 1 4444 1 4444 666 1 1 1 22 1 000 55555555555555555555 2 33 000 3 4 1111 3 0000000000 1111 1 5555555555555555555555 111 1 0 4 2 2 2 2 6 2 1 0 0 66666 2 4 4 2 4 3 4 2 3 0 0 4 3 3 666666 2 2 2 6 4 666 77777777777777 222222 1 1 2 666 777 2 3 0 0 4 0 3 6 2 2 33 4 1 2 1 1 2222222222 99 99999999999999999999999999999999999999999999999999999999999 4 4 4 4 0 3 111 3 5 0 2 0 4 4 88 4 00000 4 3 3 2 111 4 0 000 4 33333333333333333333 777777 1 7 88 888 44444 1 4444 3 1 1 0 0 1 1111 0 1 1 55 3 22 2 4 88 0 0 000 88 3333333 4 5 4 4 888888 3333 3 4 333 6666666666 44 33333333 6 1 1 22 222222222 1 7 3333 11 77 1 0 1111 1 7 0 1 0 5 3333 7 1 00000 99999 1 1 4 9 0 1 1 2 1 0 22 0 1 6 7 3 6 0 333 1 1 0 6 0 00 0 1 0 1 0 7 0 0 77 7 1111 2 000000000 3333333333 4 2 1 4 55 1 2 55555 2 22 88 7 2 4 0 3333333333 1 33333 0 666 666666666 3 3 4 777777777 1 11 8 8 11 2 2 2 33 33 0 33 0 22222222222222 1 6 0 0 999999999999999999999999 0 1111111111111111111111111 33 44 3 2 3 7 3 1
lowQualScore : .. . . .. . . .... . .. . ..... . .. ...... .. . . . . .. . .... . ... .. . . . . ... . . . . ..... . . ....... . . . . .. . . . . . . ............. ... . ....... . . . . .............. .. .. . . .. . . . .. . .. . . . . . . . . . . .. . ...... ..... .. .... . . .... . .... ... . . . .. . ... .................... . .. ... . . .... . .......... .... . ...................... ... . . . . . . . . . . . . ..... . . . . . . . . . . . . . . ...... . . . . . ... .............. ...... . . . ... ... . . . . . . . . . . .. . . . . . .......... .. ........................................................... . . . . . . ... . . . . . . . .. . ..... . . . . ... . . ... . .................... ...... . . .. ... ..... . .... . . . . . . .... . . . .. . .. . . .. . . ... .. ....... . . . . ...... .... . . ... .......... .. ........ . . . .. ......... . . .... .. .. . . .... . . . . . . .... . . ..... ..... . . . . . . . . . . .. . . . . . . . ... . . . . . .. . . . . . . . . .. . .... . ......... .......... . . . . .. . . ..... . .. .. . . . . .......... . ..... . ... ......... . . . ......... . .. . . .. . . . .. .. . .. . .............. . . . . ........................ . ......................... .. .. . . . . . .
lowQualScore : 00 0 0 00 7 0 7777 0 77 7 00000 7 00 333333 00 7 7 0 0 00 7 7777 7 000 77 7 7 0 7 333 0 0 0 7 00000 0 7 0000000 7 7 7 7 33 0 0 7 0 0 7 7777777777777 000 0 7777777 3 0 3 7 00000000000000 33 77 7 0 77 0 0 0 00 7 33 7 0 0 3 7 0 0 0 7 0 77 0 888888 55555 00 0000 0 0 0000 0 5555 555 0 0 0 00 0 555 55555555555555555555 5 88 888 0 0 8888 2 2222222222 2222 0 2222222222222222222222 000 0 2 0 5 5 5 5 5 5 0 0 0 55555 5 0 2 5 2 0 0 5 0 0 0 0 2 2 000000 5 5 5 5 0 222 22222222222222 333333 0 0 5 888 000 0 2 0 2 2 2 0 5 5 5 22 0 0 0 0 0 8888888888 00 00000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 000 0 5 0 5 0 0 0 55 0 00000 0 0 0 5 000 0 0 555 0 77777777777777777777 333333 0 3 33 777 33333 0 0000 3 0 0 7 7 0 2222 7 0 0 00 7 00 5 0 00 0 0 555 00 5555555 0 5 0 0 555555 5555 3 0 333 3333333333 33 77777777 7 0 0 00 777777777 0 3 0000 77 77 0 7 7777 0 3 7 0 7 5 5555 3 0 22222 88888 0 0 0 8 2 0 0 5 0 7 00 7 0 7 3 3 7 7 000 0 0 7 7 7 77 7 0 7 0 7 3 7 7 77 3 3333 5 000000000 8888888888 2 5 0 0 00 2 0 00000 0 88 22 0 5 2 8 3333333333 0 88888 2 888 000000000 5 2 2 888888888 0 88 0 0 00 5 5 5 88 22 0 88 0 22222222222222 0 5 0 2 555555555555555555555555 0 5555555555555555555555555 22 55 2 5 2 3 3 0
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC-T---ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCATT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAAA-T-AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGA----GCG-AG-TTANCAAAAAACAANA--AGAAATTGAAGNTNTGGTAACAAAAATGCAA----T----TGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTT-ATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNT-AA-CTT-NNA-GAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGAG-TTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCN--TTCA---GTC-------AAGATAAGACCCGTC----TGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCAAAAA-GTCAGCCAAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAA-TTTTAAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTAAGACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGAT--TATTTATCTNTGTTGTA-CTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNT----ATGTATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGGTATATTTACTGTAGGAGATGTGAATGCAAGGATAGGGTAGCTTTAAAANCCGATTGCATNGANAATGACGGGCCGTTAAATGGTCAT-GATNACTT---TGATATT---GA--TA-ACANTCCGATAC-CCCGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---ATAA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCTGTTAACGGCCCACGATAACTTTGACACACTT-TCAGATTTTTNTGTTCACGATTTTAATGAATTCTCC--AATCACGCCCCAATCGCATTTTCATTCGATATAACGNCTCAATATGATTCACGGT-ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-C-GA-T-CTCACTGANTTCATCGAC---AAAA-TGNAAATNAATATT-TTA-AACA--TACTGTTAAACCTTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTTAATGATGAATGTAAAACTCGCCAAT-A-TATACAAGGA-ATCTAT----------TTTAT---TGTATAATATAAATAAAAC-GGATG-C-AACAG-----GCANTTGATGNTACAATCGAANAAGAATTATAAATATTATTGCNGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAAATAGGAANAAANGGAAAAAGTCCAAGGAATCNCCTNGGGAAANTAAAGTCGGACCTGNATCAAAAGTGAGAAAGGACAANGAAAAAATGGCTNNAAATGGCGCGAGTTCANCNCAANNACCGCANTTTCCCACGCCACAAACNGTCGGGCATGGNGCGAACTTTGGACANCANCNGGCAAGTCAGCCNTTCAATATATNACAGCCTATGACTCCAACGCACCCGCGACCNANTCGCNATTGATGATCAAAATATGGCTATGAATTCNNNGTCNCCAAATTTTCATCANTACACATCAGCGCCGACAAATAATTCGCTACTCAACAACGATATCNTGTCNGTGNTANTNCAAAGGNTNNGCTCCGTGGACCAGAAANCNGTCCACATTAGACACNATTCNGTCGANCGTGNGCGNTATAACGGCGAGGTTG--CATTATGGATCAGAATGGATCAACGACACGNAGNGAAATTAGAANGCAAANTNAACGATCTNGAANATANTNNTTCNTTTGACGCTAGCTCAAT-GTGA----GCG-AG-TTA-CAAAAAACAACA--AGAAA--GAAGATTTGGTGANAAAAATGCAA----T----TGAAAAA----GANCAACAA----AGTGGAGGAA--T--AGTT-A-AAANCGGATATTACGGACATAAAATGTCGCAGTATGCGCGACAATCTGATGTTTTNT-AA-CTT-CAA-GAAGAAAAAGGCGAAAACTGTGACACGAAAATCCTCGAATTTATTGAACATGAA-TTGA-AGCTTGTAAATGC-GNAA-CGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCC--TTCA---GTC-------AAGATAAGACCCATC----TGTTGCCAAATNCNCCTATTACCCAGATAGAGAGCGTGT-CGAAAAGGTCGGCCAAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAAGCGTTCATAAACATTGATAAACTNTACATTGATAACCATTTGCACANAGGANAGTTTTAAAACTAGNNCTCATGTGAGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGNAAGACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTNAGATTCCCGATGAT--TNNTNATCTCTGTTGTA-CTTNTGTAGCACCTGAAAATTNCCCCGTCCATANT----ATGTATGATATTGACATNTTTNGNNAAATTAGAAANNGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTT-CTGT-GAAGATGTAAATGCAAGGATAGGG-AG----AAAATCTGATTGTATTGAAAATGACGGGCCGTTAAATGGTCAT-GATAACTT---TGATATT---GATTTANACACCCCGNTACACCCGGGCNACNTNNGACANTGGTAGCTCAAATNGTTTTGGTGANCGCTTGNTNGATTTNTGCAAGTCGCTACNAATATGCGTATNGTCAATGAGCGTCTAGGTTACANCGGG---ATAA-GG-TNTAGGTAAANTTACATGCGTNACANATAATGGAGAGAGTNTAGTCGACTACCTGTTGACNNCCCACGANAACGTTGACACACTTGTCCGACTTTNNNGTNCNCGATTTTAATGAGTTCTCCTAAATCACGCNCCAATCGCATNTCCATTCGACACAACGNCTCAATATGATTCACAGT-ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGGAAACCNGAATTTAAAAACGATANTATAAACGGTATT-----TCTCGAGGTATAAATAATTTAGAACAATCGCTGTTAGATGGCATATATTCAATAACTGTAGTNCTGATG----AGCT-CGTAT-C-AA-T-NTTACTGAATTTATCGAC---AANA-TGNAAATNAATATT-TTA-AACA--TACTGTTAAACCTTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTTAATAATGAATGTAAAA-TCGCAAA-----ATANAAGGA-ATCTAT----------TTCAT---TGT-TGATATAAATAAAAC-GGATG-C-AACAG-----GCAGTT-ATG-TACAAT-GAACGAGAATTATAAATATTATTGTCGAAAATGTAAATATCGCNTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTTATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAACGGAGAG------CATTA--G--CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAAAATCAACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGA----GCG-AAATTAATAAAAAACAAAA--AGAAATTGAAGCTATGGTAACAAAAATGCAA----TCTTTTGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTT-A-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTT-AA-CTT-GAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGTAA-TGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCA--TTCA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACAT--AAAAAGGTCGGCTA-GAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGA----TAA--CTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAACAAAA-CTTCAGATATCGACTTCAAAGGGTATA--GTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTATTTTTT-AATATT---GATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAAC----ATGTATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAA--ATATTTATTGTAGGAGATATGAAT---AG--TAGAGTAGCTTTAAAAACCGAT-ACATAGATAATGACAG------AAA----CATTGAGCAATT---TGATTTTCTCAAAGTAGACAATCCAATAC-CTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAAGG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCTGTTAACGGCCCACAATAACTTTGACACACTT-TCAGATTTTTGTGTTCACAATTTTAACGAATTCTCC--AATCATGCCCCAATCACATTTTCATTCGATATAACGCCTCAATATGAATCAC-GTGATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-C-GAGT-CTCACTGACTTCATGGAC---AAAAATGCAAATAAATATT-TCA-GGCA--TACTGTTAAACCTTCGGGTA--ATTATTTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTTAATGATGAATGTAAAACTCGCCAATCACTATACAAGGA-ATATAT----------TTTAT---TGTATAATATAAATAAATC-GGATG-CGAACAG-----GCAATTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAAT-TTAGAACAATCGCTGTTAAAC-TTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTAAAGGATGAATGTAAAACTCGCCAATGAATATACAAGGA-ATCTAT----------TT-------------TATAAATAAAAC-GGAT-------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---ATAATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCTGTTAACGGCCCACAATAACGTTGACACACTT-TCAGATTTTTTTGTTCACAATTTTAATGAATTCTCC--AATTACGCCCCAATCACATTTTCATTCGATATAACGTCTCAATATGATTCACG------CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAATG--AGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTT---AAATTAGTTTTCATGTGAGAGTGa
gi|13 : AT-GATGACGTATATGACATT---GA------CACCCCATTACACCCGG-CTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaaagataaggagctatttatgtgacaggggacaccaattcatgggttggccgtaaaaaagattttattgtcaatgtttgtatccttgacaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACAAAA-ACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGAT--TATTAAT-TTTGTTGTA-CTTATGTAGTACCTGAAAATTACCCTGTTTATGCTAGCAATGAATTATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCC-AA-TACTCACTGATTTTATTGAC---AATACTGAAAATG--TACTGTTA-AACA--Ta
gi|17 : TGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTAT
gi|18 : gtcggacaATAAT----ATTTATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAA--TTTAAA-------CTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGT-AGACTGTATATTATGGTTAAAATTAGATCGAACA-TTTTTTCAGATTCCCGATGAT--T-ATTATCTCTGTTGTA-CTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCT----AGGTATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTT-CTGT-GAAGATGTAAATGCAAGGATAGGG-AG----AAAATCTGATTGTATTGAAAATGACGGGCCGTTAAATGGTCAT-GATAACTT---TGATATT---GATTTATATATTCTGA-------GGGCAACCTCAGACAGTGGTA---CAAATAG-TTTGGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCATA-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTttta
gi|3 : actatcgcagcaacagaaatcaaattctAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAATT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGA-TAGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAA----AACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA----TAA-TG-TTAGCAAAAAACAACAACAAAAA--GAAGATTTGGT--TAAAA--GCA----------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTT-ATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAA-CTT-CCA-GAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGAA-TTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCATC-----GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAA--TCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACCTT-----ATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCATTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG--AGG--G--CATTA--G--CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAAACTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGA----GCGAAA-TTATTAAAATGCAAAA--GGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTT----TGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAA-AAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTT-AA-CTTGAAA-GAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGTG-GTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCA--TTCA---ATC-------
gi|5 : GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAG-------GACATTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGACAATGTG-AG-----CAAAAAACAACA--AGTA---GAAGATTTGGTGAAAAGCATGAAAAAA-TA---TGAACAA----GAACAACGACAG-AG-GGAGGAA-----AGTT-ATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTAT-AAACTT-CCA-GAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGAA-TTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCC--TTC-----TCTAATGAAAAGATAAGACCCATC----T-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAA--TCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACA-TTT--AAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----ATAA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCTATTGACTTCCTATGAAAATTTTGAT-CATTTGTCCAACTTTGAAGTACTTGATTTTAAT-AGTTTTTTTAAATCATGCACCAATAGCATATCC-TTTAACACAATGA--CAA----ATTTACAGT-ATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT------T-TTTACTGAATTT-TTGACTGTAAGA--GGAAACTAGTATT-TTA-AACA--AACT-TCAAAACTT-AAACACCATTA-TTTTATGTGCAAGGATG-AAAACAAACAAAAATGGTATAATAATGAATGTAAA-----CAAA-----AAAAAAAGATATTTATAAAAACGCAGTTTACAAGT-T-TAATTTAAATAAAACTGAAAA-T-AATAGATTAAATATTT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|9 : ggacggttaAGTTCAGATG----ATCT-TTTAT-CGAA-C-ATTACTGCATTCATCGAC---TTAA-TGCAAATCAATATT-TCA-AGCA--TACTGTTAAACCCTCGGGTA--ATTA--TTTTTGT-CAA--ATCTAAAAAAAAAATAAGTCGTTTAATAATTAATATAAAA-TCG--AC-----ATATAA-GA-ATCTAT----------TTCAT---TATATGATATAAATCGAAC-GGATGCC-AACAG-----GCAGTTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCaaataattttaatagagatcaaag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAAGACAATGCGTCAAATATTTCGACACTAATGTAATTTTGATACAGTAATGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCTAATCACGCGGCGATTTTCTTCGGAATAGAAATATTGTAATGAACTCTACCTTATAAAACCCGAGAACACATATCTGGCACGTGAAAAAATAAACTTGCTTCCATAAACGAAATAACGGTAATATTGATATTGTTGTGAAGATTTTAATAATTGTAAGAACAGCAATTGCGACCTCGACGATATGTTTAACAATATGAATATCTTCCAGAGAAAGGTAATAGATGTGAAACGCGACATAAAATGCCAGTACAAGCACATTCCATAAACAAATGTAATGTATTGAATAACAAATAATATTATATTATCACGAATGCAAATGAAATCTTAATATATACAGGCAGTAAGTGTGTGGTTTTAATTTAAGTAGGACTGCTGAACATAAACCACATCATGATAAATTAAAAGATTATGAATAGCATTGCAGAATACTTAAAAGTAGATATAACAGATGAGTAACAAATGAATGCAATAAAA
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|16 ): TTAAGAGATAAGGGGGCTATTTATGTGACAGAGATCACCAATTCACGGGTTCGGCGTAAAAAATATTTTATTGACAATGATCGTATCCTTGACGACGATGACGTATATAACATTGACACCCCATTACATCGAGCTATTATATAATT
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 222 11 1 1 1 11 33333 222 222 555555 4444444 11 1 1 5555555555 1 4444444 1 1 1 77777777777777 1 1 1 111111 22222 11 222 2222 5555555 222 22 333333 111 7777777 2222 4444444 44444 2 222 1 1 1 1 1 55555555555555555 3333333 2 1 4444444 1 222 1 1 1 11 22222 1 1 77777777777777777777 22222 11 1 1 1 1111 1 3333 11 3333 4444444 111 1 66666666666666666 222 777777777777 1111111 1 222 1 11 1 2222 22222222222222 1 111 2222 1 22 444444444 4444444444 22222 5555555555 22222 111 333333333 333333 11 11 11 1 11 1 11 33333 44444444444444444444 1 444444444444444444444 1
lowQualScore : 22 3 7 333 88 0 3 3 3 88 33333 3 1 6 333 77 6 0 333 111111 3333333 0 0 88 0 3 3 8888888888 3 3333333 3 3 3 88888888888888 3 1 6 3 0 0 2 0 999999 66666 88 111 1 4444 1 0000000 666 1 1 22 1 000 22 000000 1 1 000 1 1 7777 3 0000000 1111 1 2222222 8 44444 9 1 0 1 2 1 1 2 6 1 1 0 222 2 1 4 1 4 1 1 1 1 0 0 1 5 5 22 5 1 1 1 1 1 1 11111111111111111 0 2222222 2 2 333 7 7 0 2 0 4 0 1 1 1 1 22 1 0 1 0 0000000 0 2 1 1 1 1 5 1 111 2 5 5 1 5 1 1 88 1 77777 1 2 2 1 333 1 5 1 5 1 33333333333333333333 77777 1 7 7 888 88 6 2 88 3 0 0 1 0000 3 2 7 3 1 2 1 3333 99 0000 0 3 0000000 7 777 1 2 7 44 1 1 3 99999999999999999 1 333 666666666666 1 5555555 3 3 6 555 2 1 6 1 88 3 7 5 3333 7 1 33333333333333 1 1 1 9 0 1 0 1 1 0 3 0 0 0 1 3 666 0000 8 2 5 1 77 7 22 2 000000000 3333333333 4 1 1 1 11 1 55555 22 88 7 2 0 0 1111111111 1 33333 0 111 111111111 1 3 4 222222 3 1 11 8 8 11 2 2 2 33 33 0 33 0 22 8 11111 55 0 44444444444444444444 0 0 444444444444444444444 44 55 1 3 1 3 7 3
lowQualScore : .. . . ... .. . . . . .. ..... . . . ... .. . . ... ...... ....... . . .. . . . .......... . ....... . . . .............. . . . . . . . . ...... ..... .. ... . .... . ....... ... . . .. . ... .. ...... . . ... . . .... . ....... .... . ....... . ..... . . . . . . . . . . . . ... . . . . . . . . . . . . . . .. . . . . . . . ................. . ....... . . ... . . . . . . . . . . . .. . . . . ....... . . . . . . . . ... . . . . . . . .. . ..... . . . . ... . . . . . .................... ..... . . . ... .. . . .. . . . . .... . . . . . . . .... .. .... . . ....... . ... . . . .. . . . ................. . ... ............ . ....... . . . ... . . . . .. . . . .... . . .............. . . . . . . . . . . . . . . . . ... .... . . . . .. . .. . ......... .......... . . . . .. . ..... .. .. . . . . .......... . ..... . ... ......... . . . ...... . . .. . . .. . . . .. .. . .. . .. . ..... .. . .................... . . ..................... .. .. . . . . . .
lowQualScore : 00 7 3 333 33 7 3 3 3 33 33333 7 0 7 333 33 7 7 333 333333 3333333 7 7 33 7 3 3 3333333333 3 3333333 3 3 3 33333333333333 7 0 7 3 7 7 0 0 222222 55555 00 000 0 0000 0 5555555 555 0 0 00 0 555 00 555555 0 0 222 0 0 5555 2 2222222 2222 0 8888888 8 55555 8 0 2 0 5 0 0 5 5 0 0 0 000 5 0 2 0 2 0 0 0 0 0 0 0 5 5 00 0 0 0 0 0 0 0 00000000000000000 7 3333333 5 0 555 5 0 0 0 2 2 2 0 0 0 0 88 0 7 0 8 2222222 2 5 0 0 0 0 5 0 000 5 5 5 0 0 0 0 55 0 00000 0 5 5 0 000 0 5 0 5 0 77777777777777777777 00000 0 3 3 777 33 0 0 33 3 7 7 0 2222 2 5 3 3 0 5 0 0000 33 7777 7 7 0000000 3 777 0 0 3 33 0 0 7 77777777777777777 0 333 000000000000 0 3333333 7 3 7 777 0 0 7 0 33 7 3 5 5555 3 0 00000000000000 0 0 0 8 2 2 2 0 0 7 2 2 0 8 0 5 222 5555 8 5 5 2 77 3 00 5 000000000 8888888888 2 0 0 0 88 2 00000 88 22 0 5 8 8 0000000000 2 88888 2 222 222222222 0 2 2 555555 2 0 88 0 0 00 5 5 5 88 22 0 88 0 00 8 88888 88 2 88888888888888888888 8 0 000000000000000000000 88 88 0 2 0 2 3 3
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAAA--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGAA-GTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTT-TGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCAAAAA-TCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTT--AAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGA--TTATT-ATCTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAG--ATATTTACTGT---AGGAGATATNAAT-CAAG--TAGGGTAGCC-TAAAAACCGATTNTATTGANAATGACGG-GCC-TTAAA----CA-TGATNACTT---TGATATT-----GA--TA-ACANTCCGATAC-CCGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCTGTTAACGGCCCACGATAACTTTGACACACTT-TCGGACTTTTGTGTTCNCGATTTTAATG--AATTCTCC--AATCACGCCCCAATCGCATTTTCATTCGATATAACGNCTCAATATGATTCACG--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGNAAATNAATATT-TTA-AACA--TACTGTTAAACCTTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTTAATGATGAATGTAAAACTCGCCAAT--A-TATACAAGGAATCTAT----------TTTAT-TGTATAATATAAATAAAAC-GGATG-C-AACAG-----GCANTTGATGNTACAATCGAANAAGAATTATAAATATTATTGCNGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAAA--T--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCG-A-GTTANCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAA----T-TGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAA-CTT-NNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCAAAAAGTCAGCCAAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTTAAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTAAGACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGA--TTATTTATCTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGGTATATTTACTGT---AGGAGATGTGAATGCAAGGATAGGGTAGCTTTAAAANCCGATTGCATNGANAATGACGG-GCCGTTAAATGGTCA-TGATNACTT---TGATATT-----GA--TA-ACANTCCGATACCCCGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCTGTTAACGGCCCACGATAACTTTGACACACTT-TCAGATTTTTNTGTTCACGATTTTAATG--AATTCTCC--AATCACGCCCCAATCGCATTTTCATTCGATATAACGNCTCAATATGATTCACGGTATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGNAAATNAATATT-TTA-AACA--TACTGTTAAACCTTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTTAATGATGAATGTAAAACTCGCCAAT--A-TATACAAGGAATCTAT----------TTTAT-TGTATAATATAAATAAAAC-GGATG-C-AACAG-----GCANTTGATGNTACAATCGAANAAGAATTATAAATATTATTGCNGAAAATGTAAATAT-GCGTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAAC-G-GAGA--G--CATTA-G---CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAAAATC--AACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAA-ATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTT-TGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTTA-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTTAA-CTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCATT--CA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACATA-AAAAGGTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGAT-----AACTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAAC-AAAACTTCAGATATCGACTTCAAAGGGTAT--AGTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTA-TTTTTTAATATT---GATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAACATGT-ATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAA--ATATTTATTGT---AGGAGATATGAAT---AG--TAGAGTAGCTTTAAAAACCGA-TACATAGATAATGACAG-------AAA----CATTGAGCAATT---TGATTTTCTCAAAG--TAGACAATCCAATACCTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAA-GG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCTGTTAACGGCCCACAATAACTTTGACACACTT-TCAGATTTTTGTGTTCACAATTTTAACG--AATTCTCC--AATCATGCCCCAATCACATTTTCATTCGATATAACGCCTCAATATGAATCACGTGATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-CGAGT-C-TCACTGACTTCATGGACA--AA-AATGCAAATAAATATT-TCA-GGCA--TACTGTTAAACCTTCGGGTA--ATTATTTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTTAATGATGAATGTAAAACTCGCCAATC-ACTATACAAGGAATATAT----------TTTAT-TGTATAATATAAATAAATC-GGATG-CGAACAG-----GCAATTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAAT-TTAGAACAATCGCTGTTAAAC-TTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAAAATAAGTGGTTAAAGGATGAATGTAAAACTCGCCAATGAA-TATACAAGGAATCTAT----------TT-----------TATAAATAAAAC-GGAT-------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---AT-AATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCTGTTAACGGCCCACAATAACGTTGACACACTT-TCAGATTTTTTTGTTCACAATTTTAATG--AATTCTCC--AATTACGCCCCAATCACATTTTCATTCGATATAACGTCTCAATATGATTCACG-----CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAA-TGAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTT--AAATTAGTTTTCATGTGAGAGTGa
gi|13 : AAGATAAGGAGC-----TATTTA-TGTGACAGGGGACACCAATTCA----TGGGTTGGCCGTAAAAAA-GATTTTATTGTCAATGTTTGTATCCTTGA-----CAATGATGACGTATATGACATT-----GA------CACCCCATTACACCCGGCTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACA-AAAACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGA--TTATTAAT-TTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTA-GCAATGA-ATT-ATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAA-TAC-TCACTGATTTTATTGAC---AATACTGAAAATG--TACTGTTA-AACA--Ta
gi|17 : TGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTAT
gi|18 : gtcggacaATAATATTT-ATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAA-TTTAA-------ACTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTTTTCA-GATTCCCGATGA--TTATT-ATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCTAGGT-ATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTT-CTGT----GAAGATGTAAATGCAAGGATAGGG-AG----AAAATCTGATTGTATTGAAAATGACGG-GCCGTTAAATGGTCA-TGATAACTT---TGATATT-----GATTTATATATTCTGA------GGGCAACCTCAGACAGTGGTA---CAAATAGTTT-GGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCAT-A-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTttta
gi|3 : actatcgcagcaacagaaatcaaattctAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAA-TT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAAA------ACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGATAA-T-GTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA-------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTTATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAACTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCAT----C-GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAA-TCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACC--T---TATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCA-TTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG-AGG---G--CATTA-G---CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAAA--CTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAA-ATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTT-TGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAAAAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTTAA-CTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGT-GGTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCATT--CA---ATC-------
gi|5 : -GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAG---------GACATTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGA-CA-ATGTGAGCAAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAA-TATGAACAA----GAACAACGACAG-AGG-GAGGAA-----AGTTATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTATAAACTT-CCAGAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCCTT--C-----TCTAATGAAAAGATAAGACCCAT----CT-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAA-TCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACATTT--AAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----AT-AA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCTATTGACTTCCTATGAAAATTTTGAT-CATTTGTCCAACTTTGAAGTACTTGATTTTAAT---AGTTTTTTTAAATCATGCACCAATAGCATATCC-TTTAACACAATGA--CAA----ATTTACAGTATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT-----T-T-TTACTGAATTT-TTGACTGTAA-GA-GGAAACTAGTATT-TTA-AACA--AACT-TCAAAACTT-AAACACCATTA-TTTTATGTGCAAGGATG-AAAACAAACAAAAATGGTATAATAATGAATGTAAA------CAA---A-AAAAAAAGATATTTATAAAAACGCAGTTTACAAGTTTAATTTAAATAAAACTGAAAA-T-AATAGATTAAATATTT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|7 : ggacggttaTAATTTTGATACAGTA-ATGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCT----AATCACGC----GGCG-ATTTTC-TTCGGAATAaaataattttaatagagatcaaag
gi|9 : taagacaatgcgtcaaatatttcgacactaatgAGTTCAGATG----ATCT-TTTAT-CGA-A-CATTACTGCATTCATCGAC---TT-AATGCAAATCAATATT-TCA-AGCA--TACTGTTAAACCCTCGGGTA--ATTA--TTTTTGT-CAA--ATCTAAAAAAAAAATAAGTCGTTTAATAATTAATATAAAA-TCG---AC--A-TAT---AAGAATCTAT----------TTCAT-TATATGATATAAATCGAAC-GGATGCC-AACAG-----GCAGTTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCgaaatattgtaatgaactctaccttataaaacccgagaacacatatctggcacgtgaaaaaataaacttgcttccataaacgaaataacggtaatattgatattgttgtgaagattttaataattgtaagaacagcaattgcgacctcgacgatatgtttaacaatatgaatatcttccagagaaaggtaatagatgtgaaacgcgacataaaatgccagtacaagcacattccataaacaaatgtaatgtattgaataacaaataatattatattatcacgaatgcaaatgaaatcttaatatatacaggcagtaagtgtgtggttttaatttaagtaggactgctgaacataaaccacatcatgataaattaaaagattatgaatagcattgcagaatacttaaaagtagatataacagatgagtaacaaatgaatgcaataaaa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|16 ): TTAAGAGATAAGGGGGCTATTTATGTGACAGAGATCACCAATTCACGGGTTCGGCGTAAAAAATATTTTATTGACAATGATCGTATCCTTGACGACGATGACGTATATAACATTGACACCCCATTACATCGAGCTATTATATAATT
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 222 11 1 1 1 11 33333 222 222 555555 4444444 11 1 1 5555555555 1 4444444 1 1 1 77777777777777 1 1 1 111111 22222 11 222 2222 44444444444444 222 22 1 111 111111 2222 4444444 44444 1 111 1 1 1 1 1 55555555555555555 3333333 1 1 1 222 1 1 1 11 22222 1 1 77777777777777777777 11111 1 1111 1 11111111 22 2222 55555555555555555555555 111 666666666666666666666666666666666666666666666666666666 111111 1 222 1 11 1 2222 22222222222222 1 11111 1111 1111 1 1 333333 444444444 4444444444 22222 5555555555 22222 111 333333333 333333 11 11 11 1 11 1 44444444444444444444 3333333333333333333333 66666666666666666666666666 11 1
lowQualScore : 22 3 7 333 88 0 3 3 3 88 33333 3 1 6 333 77 6 0 333 111111 3333333 0 0 88 0 3 3 8888888888 3 3333333 3 3 3 88888888888888 3 1 6 3 0 0 2 0 999999 66666 88 111 1 4444 1 22222222222222 1 1 22 1 000 22 5 4 0 1 000 1 1 7777 3 333333 1111 1 2222222 8 44444 9 1 0 1 2 1 1 2 6 1 1 5 777 2 1 4 1 4 1 1 1 1 0 0 1 5 5 22 5 1 1 1 1 1 1 11111111111111111 0 2222222 2 2 0 0 0 0 2 0 4 0 1 1 1 1 22 1 0 1 0 3 33 2 1 1 1 1 5 1 111 2 5 5 1 5 1 1 88 1 77777 1 2 2 1 333 1 5 1 5 1 33333333333333333333 66666 1 7 7 0 0 88 3 0 0 1 0000 3 2 7 3 1 2 1 99999999 22 4444 0 0 1 3 99999999999999999999999 555 3 1 1 444444444444444444444444444444444444444444444444444444 1 22 666666 3 3 6 555 2 1 6 1 88 3 7 5 3333 7 1 33333333333333 1 1 1 9 0 1 0 1 1 0 0 3 0 77 66666 1 1 1 5 6666 7777 0 2 5 1 77 7 999999 2 000000000 3333333333 4 1 1 1 11 1 55555 22 88 7 2 0 0 1111111111 1 33333 0 111 111111111 1 3 4 222222 3 1 11 8 8 11 2 2 2 33 33 0 33 0 8 1 99999999999999999999 0 0 6666666666666666666666 1 8 33333333333333333333333333 3 00 1 6 1 3 7 3
lowQualScore : .. . . ... .. . . . . .. ..... . . . ... .. . . ... ...... ....... . . .. . . . .......... . ....... . . . .............. . . . . . . . . ...... ..... .. ... . .... . .............. . . .. . ... .. . . . . ... . . .... . ...... .... . ....... . ..... . . . . . . . . . . . . ... . . . . . . . . . . . . . . .. . . . . . . . ................. . ....... . . . . . . . . . . . . . . .. . . . . . .. . . . . . . . ... . . . . . . . .. . ..... . . . . ... . . . . . .................... ..... . . . . . .. . . . . .... . . . . . . . ........ .. .... . . . . ....................... ... . . . ...................................................... . .. ...... . . . ... . . . . .. . . . .... . . .............. . . . . . . . . . . . . . .. ..... . . . . .... .... . . . . .. . ...... . ......... .......... . . . . .. . ..... .. .. . . . . .......... . ..... . ... ......... . . . ...... . . .. . . .. . . . .. .. . .. . . . .................... . . ...................... . . .......................... . .. . . . . . .
lowQualScore : 00 7 3 333 33 7 3 3 3 33 33333 7 0 7 333 33 7 7 333 333333 3333333 7 7 33 7 3 3 3333333333 3 3333333 3 3 3 33333333333333 7 0 7 3 7 7 0 0 222222 55555 00 000 0 0000 0 55555555555555 0 0 00 0 555 00 0 0 2 0 222 0 0 5555 2 222222 2222 0 8888888 8 55555 8 0 2 0 5 0 0 5 5 0 0 5 000 5 0 2 0 2 0 0 0 0 0 0 0 5 5 00 0 0 0 0 0 0 0 00000000000000000 7 3333333 5 0 2 8 5 0 0 2 2 2 0 0 0 0 88 0 7 0 8 2 55 5 0 0 0 0 5 0 000 5 5 5 0 0 0 0 55 0 00000 0 5 5 0 000 0 5 0 5 0 77777777777777777777 77777 0 3 3 7 7 33 3 7 7 0 2222 2 5 3 3 0 5 0 88888888 22 5555 2 8 0 2 55555555555555555555555 555 2 0 0 000000000000000000000000000000000000000000000000000000 0 88 555555 7 3 7 777 0 0 7 0 33 7 3 5 5555 3 0 00000000000000 0 0 0 8 2 2 2 0 0 0 2 2 8 22 66666 4 0 0 6 6666 4444 0 5 5 2 77 3 333333 5 000000000 8888888888 2 0 0 0 88 2 00000 88 22 0 5 8 8 0000000000 2 88888 2 222 222222222 0 2 2 555555 2 0 88 0 0 00 5 5 5 88 22 0 88 0 0 4 00000000000000000000 8 8 2222222222222222222222 4 0 66666666666666666666666666 8 88 0 0 0 2 3 3
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAG--NTATTTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TTGAN----NA-TGATGACTT---TGATATT-----GA--TA-ACATTCCGATAC-C-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCNCCAATCGCATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGNAAATNAATATT-TTA-AACA--TACTGTTAAACCTTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAA-AATAAGTGGTTTAATGATGAATGTAAAACTCGCCAAC--A-T-----ATACAAGGAATCTAT----------TTTAT-CGTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCA-----NTTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGAAGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCAAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATCTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAG--ATATTTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--AGC-C-TAAAAACCGATTNTATTGANAATGA-CG-GG--CC-TTAAA----CA-TGATNACTT---TGATATT-----GA--TA-ACANTCCGATAC-C-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAACTTTGACACACTT-T--CGGACTTTTGTGTTCNCGATTTTAATG--AATTCTCC--AATCACGCCCCAATCGCATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGNAAATNAATATT-TTA-AACA--TACTGTTAAACCTTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAA-AATAAGTGGTTTAATGATGAATGTAAAACTCGCCAAT--A-T-----ATACAAGGAATCTAT----------TTTAT-TGTAT-AATATAAATAAAAC-GGATG-C-AACAG-----GCA-----NTTGATGNTACAATCGAANAAGAATTATAAATATTATTGCNGAAAATGTAAATAT-GCGTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAAC-G-GAGA--G--CATTA-G---CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAA-AATC--AACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAAATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTTA-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCATT--CA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACATAAAAAGGTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGAT---AACTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAAC-AAAACTTCAGATATCGACTTCAAAGGGTAT--AGTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTA-TTTTTTAATATTGATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAACATGT-ATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAA--ATATTTATTGT---AGGAGATATGAAT---AG--T-A-GAGT--AGCTT-TAAAAACCGA-TACATAGATAATGA-CA-G--------AAA----CATTGAGCAATT---TGATTTTCTCAAAG--TAGACAATCCAATAC-CTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAA-GG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCT-GTTAACGGCCCACAATAACTTTGACACACTT-T--CAGATTTTTGTGTTCACAATTTTAACG--AATTCTCC--AATCATGCCCCAATCACATTTTCATTCGATATAACGCCTCAATATGAATCACGTG--ATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-CGAGT-C-TCACTGACTTCATGGACA--AA-AATGCAAATAAATATT-TCA-GGCA--TACTGTTAAACCTTCGGGTA--ATTATTTTTTTGT-CAA--ATC-AAAACAAA-AATAAGTGGTTTAATGATGAATGTAAAACTCGCCAATC-ACT-----ATACAAGGAATATAT----------TTTAT-TGTAT-AATATAAATAAATC-GGATG-CGAACAG-----GCA-----ATTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAAT-TTAGAACAATCGCTGTTAAAC-TTCGGGTA--ATTA-TTTTTTGT-CAA--ATC-AAAACAAA-AATAAGTGGTTAAAGGATGAATGTAAAACTCGCCAATGAA-T-----ATACAAGGAATCTAT----------TT------------TATAAATAAAAC-GGAT------------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---AT-AATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCT-GTTAACGGCCCACAATAACGTTGACACACTT-T--CAGATTTTTTTGTTCACAATTTTAATG--AATTCTCC--AATTACGCCCCAATCACATTTTCATTCGATATAACGTCTCAATATGATTCAC--G-----CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAATGAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTTAAATTAGTTTTCATGTGAGAGTGa
gi|13 : AAGATAAGG---AG--CTATTTA-TGTGACAGGGGACACCAATTCA----T-G-GGTT--GGC-CGTAAAAAA-GATTTTATTGTCAATGT-TT-GTATCC-TTGAC----AA-TGATGACGTATATGACATT-----GA------CACCCCATTACAC-CCGGCTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACAAA-AACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGATTATTAATTTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTA-GCAATGA-ATT-ATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAA-TAC-TCACTGATTTTATTGAC---AATACTGAAAATG--TACTGTTA-AACA--Ta
gi|16 : AGATAAGGGG--G--CTATTTA-TGT---GACAGAGATCA-C-CAAT--TCACGGGTTCGGC-G-TAAAAAAT-ATTTTATTGACAATGATCGTAT--CC-TTGAC----GA-CGATGAC-------GTAT-------A--TA-ACATT--GACAC-C-C
gi|17 : ttaagTGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTATcattacatcgagctattatataatt
gi|18 : gtcggacaATAATATTT-ATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAATTTAA------ACTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTTTTCA-GATTCCCGATGATTATTATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCTAGGT-ATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTT-CTGT----GAAGATGTAAATGCAAGGAT-A-GGG---AG-----AAAATCTGATTGTATTGAAAATGA-CG-GG--CCGTTAAATGGTCA-TGATAACTT---TGATATT-----GATTTATATATTCTGA-------GGGCAACCTCAGACAGTGGTA---CAAATAGTTT-GGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCAT-A-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTCGTCACTGATGCGTG-T-ATTTTCA-ATACTA-TAACGGACTTCAGT-TTCATGAT--------------TCA--AATCACGCGCCGATttta
gi|2 : actatcgcagcaacagaaatcaaattctAAATAACAAATGGTTTGATCAAGAATGCAAA---CGAAAAC--A-TGGGGTATACAAGGAGGC-AG----------TTTCT-CGTTTGAATTTAAGTAGGAC-AGCTG---AAAAT-----GAATACCTCCTCATGATA-AAT--AAAAAATACTATAAATATCATTGTAGAAttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|3 : actatcgcagcaacagaaatcaaattctgattttacaaacattattggagattatgatgttatttttttctaagtgagacatggacaggcaaaaactctaaattggacttaatggatttaaagtattccattcatatagaaaatttcaatataaaagagccaaacgtaaaagtggaggtattttagcatgtcagaaactctataataaaaggaattaaactgataaaaaatgatgtagactgtatattatggttaaaattagatcgaacattttttcagattcccgatgattattatctctgttgtacttctgtagcacctgaaaattcccccgtccatgctaggtatgattttgatatatttcgcaaattagaaatggatatcggatactttcaaaataagggaaaggtatatttctgtgaagatgtaaatgcaaggatagggagaaaatctgattgtattgaaaatgacgggccgttaaatggtcatgataactttgatattgatttatatattctgagggcaacctcagacagtggtacaaatagtttggtgagcacttgatagatttatgcaaattactacaaatgcgtatagttaatgagcgtctaggaacggacgcatatataggtcaatctacatgttttacaaataatggagaaagtgttgtcgattatctcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAA-TT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAA-A------ACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA-TAATGTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTTATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAACTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCAT----C-GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAATCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACC--T---TATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCA-TTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG-AGG---G--CATTA-G---CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAA-A--CTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAAATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAAAAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGT-GGTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCATT--CA---ATC-------
gi|5 : -GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAGGA--C--A------TTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGA-CAATGTGAGCAAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAATATGAACAA----GAACAACGACAG-AGG-GAGGAA-----AGTTATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTATAAACTT-CCAGAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCCTT--C-----TCTAATGAAAAGATAAGACCCAT----CT-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAATCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACATTTAAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----AT-AA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCT-ATTGACTTCCTATGAAAATTTTGAT-CATTTGT--CCAACTTTGAAGTACTTGATTTTAAT---AGTTTTTTTAAATCATGCACCAATAGCATATCC-TTTAACACAATGA--CAA----ATTTAC--AGTATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT-----T-T-TTACTGAATTT-TTGACTGTAA-GA-GGAAACTAGTATT-TTA-AACA--AACT-TCAAAACTT-AAACACCATTA-TTTTATGTGCAAGGATG-AAAACAAA-CAAAAATGGTATAATAATGAATGTAAA------CAA---A-A-----AAAAAAGATATTTATAAAAACGCAGTTTACAAGTTT-AATTTAAATAAAACTGAAAA-T-AATAGATTAAATA-----TTT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|7 : ggacggttaTAATTTTGATACAGTA-A--TGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCT----AATCACGC----GGCG-ATTTTC-TTCGGAATAaaataattttaatagagatcaaag
gi|9 : taagacaatgcgtcaaatatttcgacactaatgAGTTCAGATG----ATCT-TTTAT-CGA-A-CATTACTGCATTCATCGAC---TT-AATGCAAATCAATATT-TCA-AGCA--TACTGTTAAACCCTCGGGTA--ATTA--TTTTTGT-CAA--ATCTAAAAAAAA-AATAAGTCGTTTAATAATTAATATAAAA-TCG---AC--A-T-----AT---AAGAATCTAT----------TTCAT-TATAT-GATATAAATCGAAC-GGATGCC-AACAG-----GCA-----GTTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCgaaatattgtaatgaactctaccttataaaacccgagaacacatatctggcacgtgaaaaaataaacttgcttccataaacgaaataacggtaatattgatattgttgtgaagattttaataattgtaagaacagcaattgcgacctcgacgatatgtttaacaatatgaatatcttccagagaaaggtaatagatgtgaaacgcgacataaaatgccagtacaagcacattccataaacaaatgtaatgtattgaataacaaataatattatattatcacgaatgcaaatgaaatcttaatatatacaggcagtaagtgtgtggttttaatttaagtaggactgctgaacataaaccacatcatgataaattaaaagattatgaatagcattgcagaatacttaaaagtagatataacagatgagtaacaaatgaatgcaataaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 222 11 1 1 1 11 33333 222 222 555555 4444444 11 1 1 5555555555 1 4444444 1 1 1 77777777777777 1 1 1 111111 22222 11 222 2222 44444444444444 222 22 1 111 111111 2222 4444444 44444 1 111 1 1 1 1 1 55555555555555555 3333333 1 1 1 222 1 1 1 11 22222 1 1 77777777777777777777 11111 1 1111 1 111 1 1 2222 55555555555555555555555 111 5555555555555555 1 22222 5555555555555555555555555 1 1 222 1 11 1 2222 22222222222222 1 11111 1111 1111 1 1 333333 444444444 4444444444 22222 5555555555 22222 111 333333333 222222222 111 222222222222222 11 11 11 222222 111 444444444444444444444 44444444444444444444444 66666666666666666666666666 11 1
lowQualScore : 22 3 7 333 88 0 3 3 3 88 33333 3 1 6 333 77 6 0 333 111111 3333333 0 0 88 0 3 3 8888888888 3 3333333 3 3 3 88888888888888 3 1 6 3 0 0 2 0 999999 66666 88 111 1 4444 1 22222222222222 1 1 22 1 000 22 5 1 0 1 000 1 1 7777 3 333333 1111 1 2222222 8 44444 9 1 0 1 2 1 1 2 6 1 1 5 777 2 1 4 1 4 1 1 1 1 0 0 1 5 5 22 5 1 1 1 1 1 1 11111111111111111 0 2222222 2 2 0 4 0 0 2 0 4 0 1 1 1 1 22 1 0 1 0 3 33 2 1 1 1 1 5 1 111 2 5 5 1 5 1 1 88 1 77777 1 2 2 1 333 1 5 1 5 1 33333333333333333333 66666 1 7 7 0 88 3 0 0 1 0000 3 2 7 3 1 2 1 222 1 0 9 4444 0 0 1 3 33333333333333333333333 000 3 1 0 2222222222222222 22 0 0 33333 0000000000000000000000000 0 6 3 3 6 555 2 1 6 1 88 3 7 5 3333 7 1 33333333333333 1 1 1 9 0 1 0 1 1 0 0 3 0 77 66666 1 1 1 5 6666 7777 1 2 0 5 1 77 7 999999 2 000000000 3333333333 4 1 1 1 11 1 55555 22 88 7 2 0 0 1111111111 1 33333 0 111 111111111 1 3 4 777777777 1 1 6 6 555 888888888888888 11 11 88 8 11 8 333333 444 1 555555555555555555555 0 0 11111111111111111111111 1 8 33333333333333333333333333 3 00 0 6 0 3 7 3
lowQualScore : .. . . ... .. . . . . .. ..... . . . ... .. . . ... ...... ....... . . .. . . . .......... . ....... . . . .............. . . . . . . . . ...... ..... .. ... . .... . .............. . . .. . ... .. . . . . ... . . .... . ...... .... . ....... . ..... . . . . . . . . . . . . ... . . . . . . . . . . . . . . .. . . . . . . . ................. . ....... . . . . . . . . . . . . . . .. . . . . . .. . . . . . . . ... . . . . . . . .. . ..... . . . . ... . . . . . .................... ..... . . . . .. . . . . .... . . . . . . . ... . . . .... . . . . ....................... ... . . . ................ .. . . ..... ......................... . . . . . ... . . . . .. . . . .... . . .............. . . . . . . . . . . . . . .. ..... . . . . .... .... . . . . . .. . ...... . ......... .......... . . . . .. . ..... .. .. . . . . .......... . ..... . ... ......... . . . ......... . . . . ... ............... .. .. .. . .. . ...... ... . ..................... . . ....................... . . .......................... . .. . . . . . .
lowQualScore : 00 7 3 333 33 7 3 3 3 33 33333 7 0 7 333 33 7 7 333 333333 3333333 7 7 33 7 3 3 3333333333 3 3333333 3 3 3 33333333333333 7 0 7 3 7 7 0 0 222222 55555 00 000 0 0000 0 55555555555555 0 0 00 0 555 00 0 0 2 0 222 0 0 5555 2 222222 2222 0 8888888 8 55555 8 0 2 0 5 0 0 5 5 0 0 5 000 5 0 2 0 2 0 0 0 0 0 0 0 5 5 00 0 0 0 0 0 0 0 00000000000000000 7 3333333 5 0 2 2 5 0 0 2 2 2 0 0 0 0 88 0 7 0 8 2 55 5 0 0 0 0 5 0 000 5 5 5 0 0 0 0 55 0 00000 0 5 5 0 000 0 5 0 5 0 77777777777777777777 77777 0 3 3 7 33 3 7 7 0 2222 2 5 3 3 0 5 0 000 0 0 0 5555 2 8 0 2 55555555555555555555555 555 2 0 2 0000000000000000 00 0 2 88888 5555555555555555555555555 0 7 7 3 7 777 0 0 7 0 33 7 3 5 5555 3 0 00000000000000 0 0 0 8 2 2 2 0 0 0 2 2 8 22 66666 4 0 0 6 6666 4444 0 5 0 5 2 77 3 333333 5 000000000 8888888888 2 0 0 0 88 2 00000 88 22 0 5 8 8 0000000000 2 88888 2 222 222222222 0 2 2 666666666 0 0 7 7 222 444444444444444 00 00 88 0 00 0 000000 000 4 000000000000000000000 8 8 00000000000000000000000 4 0 66666666666666666666666666 8 88 6 0 6 2 3 3
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-T----TGACNA-TGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-T----TGANNA-TGATGACTT---TGATATT-----GA--TA-AC--ATTCCGATACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCNCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGNAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAAC-G-GAGA--G--CATTA-G---CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAA-AATC--AACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAAATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTTA-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCATT--CA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACATAAAAAGGTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGAT---AACTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAAC-AAAACTTCAGATATCGACTTCAAAGGGTAT--AGTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTA-TTTTTTAATATTGATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAACATGT-ATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAAATAT-TTATTGT---AGGAGATATGAAT---AG--T-A-GAGT--AGCTT-TAAAAACCGA-TACATAGATAATGA-CA-G------------AAACATTGAGCAATT---TGATTTTCTCAAAG--TAGAC--AATCCAATACCTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAA-GG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCT-GTTAACGGCCCACAATAACTTTGACACACTT-T--CAGATTTTTGTGTTCACAATTTTAACG--AATTCTCC--AATCATGCCCCAATCAC-ATTTTCATTCGATATAACGCCTCAATATGAATCACGTG--ATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-CGAGT-C-TCACTGACTTCATGGACA--AA-AATGCAAATAAATATT-TCA-GGCA--TACTGTTAAAC----CTT----CG--GGTA--ATT--ATTTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAATC--ACT-----ATACAAGGAATATAT----------TTTATT--GTAT-AATATAAATAAATC-GGATG-CGAACAG-----GCAA-----TTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAAT-TTAGAACAATCGCTGTTAAAC-----TT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTAAAGGATGAATGTAAAACTCGCCAA-TGAA-T-----ATACAAGGAATCTAT----------TT-------------TATAAATAAAAC-GGAT------------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---AT-AATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCT-GTTAACGGCCCACAATAACGTTGACACACTT-T--CAGATTTTTTTGTTCACAATTTTAATG--AATTCTCC--AATTACGCCCCAATCAC-ATTTTCATTCGATATAACGTCTCAATATGATTCAC--G-----CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAATGAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTTAAATTAGTTTTCATGTGAGAGTGa
gi|13 : AAGATAAGG---AGCTAT-TTA-TGTGACAGGGGACACCAATTCA----T-G-GGTT--GGC-CGTAAAAAA-GATTTTATTGTCAATGT-TT-GTATCC-T----TGACAA-TGATGACGTATATGACATT-----GA--CA-CCCCATT---ACACC-CGG-CTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACAAA-AACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGATTATTAATTTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTA-GCAATGA-ATT-ATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAA-TAC-TCACTGATTTTATTGAC---AATACTGAAAATG--TACTGTTA-AACA--Ta
gi|16 : AGATAAGGGG--GCTAT-TTA-TGT---GACAGAGATCA-C-CAAT--TCACGGGTTCGGC-G-TAAAAAAT-ATTTTATTGACAATGATCGTAT--CC-T----TGACGA-CGATGAC-------GTAT-------A--TA-AC--ATT--GACACC-C
gi|17 : ttaagTGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTATcattacatcgagctattatataatt
gi|18 : gtcggacaATAATATTT-ATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAATTTAA------ACTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTTTTCA-GATTCCCGATGATTATTATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCTAGGT-ATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTTCTGT----GAAGATGTAAATGCAAGGAT-A-GGGA--G------AAAATCTGATTGTATTGAAAATGA-CG-GG--CCGTTAAATGGTCA-TGATAACTT---TGATATT-----GATTTATAT--ATTCTGA------GGGCAACCTCAGACAGTGGTA---CAAATAGTTT-GGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCAT-A-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTCGTCACTGATGCGTG-T-ATTTTCA-ATACTA-TAACGGACTTCAGT-TTCATGAT--------------TCA--AATCACGCGCCGATttta
gi|2 : actatcgcagcaacagaaatcaaattctGAG---AA-A--GCAAATAAATAT------AATA---ATTGTGAAACGCGACATAAAACGCCAGTA--AATGCA-TATTTCAT--AA--ATA-AAAGTAATGTATTAAATAACAAATGGTTTGATCAAGAATGCAAA---CGAAAA-C--A-TGGGGTATACAAGGAGGC-AG----------TTTCTC--GTTTGAATTTAAGTAGGAC-AGCTG-A-AA-AT-----GAATACCTCCTCATGATA-AAT--AAAAAATACTATAAATATCATTGTAGAAttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|3 : actatcgcagcaacagaaatcaaattctgattttacaaacattattggagattatgatgttatttttttctaagtgagacatggacaggcaaaaactctaaattggacttaatggatttaaagtattccattcatatagaaaatttcaatataaaagagccaaacgtaaaagtggaggtattttagcatgtcagaaactctataataaaaggaattaaactgataaaaaatgatgtagactgtatattatggttaaaattagatcgaacattttttcagattcccgatgattattatctctgttgtacttctgtagcacctgaaaattcccccgtccatgctaggtatgattttgatatatttcgcaaattagaaatggatatcggatactttcaaaataagggaaaggtatatttctgtgaagatgtaaatgcaaggatagggagaaaatctgattgtattgaaaatgacgggccgttaaatggtcatgataactttgatattgatttatatattctgagggcaacctcagacagtggtacaaatagtttggtgagcacttgatagatttatgcaaattactacaaatgcgtatagttaatgagcgtctaggaacggacgcatatataggtcaatctacatgttttacaaataatggagaaagtgttgtcgattatctcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacaAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAA-TT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAA-A------ACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA-TAATGTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTTATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAACTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCAT----C-GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAATCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACC--T---TATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCA-TTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG-AGG---G--CATTA-G---CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAA-A--CTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAAATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAAAAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGT-GGTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCATT--CA---ATC-------
gi|5 : -GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAGGA--C--A------TTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGA-CAATGTGAGCAAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAATATGAACAA----GAACAACGACAG-AGG-GAGGAA-----AGTTATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTATAAACTT-CCAGAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCCTT--C-----TCTAATGAAAAGATAAGACCCAT----CT-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAATCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACATTTAAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----AT-AA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCT-ATTGACTTCCTATGAAAATTTTGAT-CATTTGT--CCAACTTTGAAGTACTTGATTTTAAT---AGTTTTTTTAAATCATGCACCAATAGC-ATATCC-TTTAACACAATGA--CAA----ATTTAC--AGTATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT-----T-T-TTACTGAATTT-TTGACTGTAA-GA-GGAAACTAGTATT-TTA-AACA--AACT-TCAAAA----CTT-----A--AACACCATT--A-TTTTATGTGCAAGGATG-AAAACAA------ACAAAA---ATGGTATAATAATGAATGTAAA------CAA-A--A-------AAAAAAGATATTTATAAAAACGCAGTTTA-CAAGTTT-AATTTAAATAAAACTGAAAA-T-AATAGATTAAATAT-----TT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|7 : ggacggttaTAATTTTGATACAGTA-A--TGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCT----AATCACGCG------GCGATTTTC-TTCGGAATAaaataattttaatagagatcaaag
gi|9 : taagacaatgcgtcaaatatttcgacactaatgAGTTCAGATG----ATCT-TTTAT-CGA-A-CATTACTGCATTCATCGAC---TT-AATGCAAATCAATATT-TCA-AGCA--TACTGTTAAAC----CCT----CG--GGTA--ATT--A--TTTTTGT-CAA--ATCTAAAAAAA------AAATAA---GTCGTTTAATAATTAATATAAAA-TCG---A-C--A-T-----AT---AAGAATCTAT----------TTCATT--ATAT-GATATAAATCGAAC-GGATGCC-AACAG-----GCAG-----TTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCgaaatattgtaatgaactctaccttataaaacccgagaacacatatctggcacgtgaaaaaataaacttgcttccataaacgaaataacggtaatattgatattgttgtgaagattttaataattgtaagaacagcaattgcgacctcgacgatatgtttaacaatatgaatatcttccagagaaaggtaatagatgtgaaacgcgacataaaatgccagtacaagcacattccataaacaaatgtaatgtattgaataacaaataatattatattatcacgaatgcaaatgaaatcttaatatatacaggcagtaagtgtgtggttttaatttaagtaggactgctgaacataaaccacatcatgataaattaaaagattatgaatagcattgcagaatacttaaaagtagatataacagatgagtaacaaatgaatgcaataaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 222 11 1 1 1 11 33333 222 222 555555 4444444 11 1 1 5555555555 1 4444444 1 1 1 77777777777777 1 1 1 111111 22222 11 222 2222 44444444444444 222 22 1 111 111111 2222 4444444 44444 1 111 1 1 1 1 1 55555555555555555 3333333 1 1 1 222 1 1 1 11 22222 1 1 77777777777777777777 11111 1 1111 1 111 1 1 2222 55555555555555555555555 111 5555555555555555 22222 44444444444444444444444 1 1 222 1 11 1 2222 22222222222222 1 11111 1111 1111 1 1 333333 444444444 4444444444 22222 5555555555 22222 111 333333333 222222222 111 222222222222222 11 11 11 222222 111 444444444444444444444 44444444444444444444444 66666666666666666666666666 11 1
lowQualScore : 22 3 7 333 88 0 3 3 3 88 33333 3 1 6 333 77 6 0 333 111111 3333333 0 0 88 0 3 3 8888888888 3 3333333 3 3 3 88888888888888 3 1 6 3 0 0 2 0 999999 66666 88 111 1 4444 1 22222222222222 1 1 22 1 000 22 5 1 0 1 000 1 1 7777 3 333333 1111 1 2222222 8 44444 9 1 0 1 2 1 1 2 6 1 1 5 777 2 1 4 1 4 1 1 1 1 0 0 1 5 5 22 5 1 1 1 1 1 1 11111111111111111 0 2222222 2 2 0 4 0 0 2 0 4 0 1 1 1 1 22 1 0 1 0 3 33 2 1 1 1 1 5 1 111 2 5 5 1 5 1 1 88 1 77777 1 2 2 1 333 1 5 1 5 1 33333333333333333333 66666 1 7 7 0 88 3 0 0 1 0000 3 2 7 3 1 2 1 222 1 0 9 4444 0 0 1 3 33333333333333333333333 000 3 1 0 2222222222222222 1 0 33333 88888888888888888888888 6 0 6 3 3 6 555 2 1 6 1 88 3 7 5 3333 7 1 33333333333333 1 1 1 9 0 1 0 1 1 0 0 3 0 77 66666 1 1 1 5 6666 7777 3 2 0 5 1 77 7 999999 2 000000000 3333333333 4 1 1 1 11 1 55555 22 88 7 2 0 0 1111111111 1 33333 0 111 111111111 1 3 4 777777777 1 6 6 555 888888888888888 11 11 88 8 11 8 333333 444 1 555555555555555555555 0 0 11111111111111111111111 1 8 33333333333333333333333333 3 00 0 6 0 3 7 3
lowQualScore : .. . . ... .. . . . . .. ..... . . . ... .. . . ... ...... ....... . . .. . . . .......... . ....... . . . .............. . . . . . . . . ...... ..... .. ... . .... . .............. . . .. . ... .. . . . . ... . . .... . ...... .... . ....... . ..... . . . . . . . . . . . . ... . . . . . . . . . . . . . . .. . . . . . . . ................. . ....... . . . . . . . . . . . . . . .. . . . . . .. . . . . . . . ... . . . . . . . .. . ..... . . . . ... . . . . . .................... ..... . . . . .. . . . . .... . . . . . . . ... . . . .... . . . . ....................... ... . . . ................ . . ..... ....................... . . . . . . ... . . . . .. . . . .... . . .............. . . . . . . . . . . . . . .. ..... . . . . .... .... . . . . . .. . ...... . ......... .......... . . . . .. . ..... .. .. . . . . .......... . ..... . ... ......... . . . ......... . . . ... ............... .. .. .. . .. . ...... ... . ..................... . . ....................... . . .......................... . .. . . . . . .
lowQualScore : 00 7 3 333 33 7 3 3 3 33 33333 7 0 7 333 33 7 7 333 333333 3333333 7 7 33 7 3 3 3333333333 3 3333333 3 3 3 33333333333333 7 0 7 3 7 7 0 0 222222 55555 00 000 0 0000 0 55555555555555 0 0 00 0 555 00 0 0 2 0 222 0 0 5555 2 222222 2222 0 8888888 8 55555 8 0 2 0 5 0 0 5 5 0 0 5 000 5 0 2 0 2 0 0 0 0 0 0 0 5 5 00 0 0 0 0 0 0 0 00000000000000000 7 3333333 5 0 2 2 5 0 0 2 2 2 0 0 0 0 88 0 7 0 8 2 55 5 0 0 0 0 5 0 000 5 5 5 0 0 0 0 55 0 00000 0 5 5 0 000 0 5 0 5 0 77777777777777777777 77777 0 3 3 7 33 3 7 7 0 2222 2 5 3 3 0 5 0 000 0 0 0 5555 2 8 0 2 55555555555555555555555 555 2 0 2 0000000000000000 0 2 88888 88888888888888888888888 5 0 7 7 3 7 777 0 0 7 0 33 7 3 5 5555 3 0 00000000000000 0 0 0 8 2 2 2 0 0 0 2 2 8 22 66666 4 0 0 6 6666 4444 2 5 0 5 2 77 3 333333 5 000000000 8888888888 2 0 0 0 88 2 00000 88 22 0 5 8 8 0000000000 2 88888 2 222 222222222 0 2 2 666666666 0 7 7 222 444444444444444 00 00 88 0 00 0 000000 000 4 000000000000000000000 8 8 00000000000000000000000 4 0 66666666666666666666666666 8 88 6 0 6 2 3 3
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-T----TGACGATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-T----TGACNATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAAC-G-GAGA--G--CATTA-G---CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAA-AATC--AACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAAATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTTA-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCATT--CA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACATAAAAAGGTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGAT---AACTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAAC-AAAACTTCAGATATCGACTTCAAAGGGTAT--AGTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTA-TTTTTTAATATTGATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAACATGT-ATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAAATAT-TTATTGT---AGGAGATATGAAT---AG--T-A-GAGT--AGCTT-TAAAAACCGA-TACATAGATAATGA-CA-G-----------AAACATTGAGCAATT---TGATTTTCTCAAAG--TAGAC--AATCCAATACCTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAA-GG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCT-GTTAACGGCCCACAATAACTTTGACACACTT-T--CAGATTTTTGTGTTCACAATTTTAACG--AATTCTCC--AATCATGCCCCAATCAC-ATTTTCATTCGATATAACGCCTCAATATGAATCACGTG--ATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-CGAGT-C-TCACTGACTTCATGGACA--AA-AATGCAAATAAATATT-TCA-GGCA--TACTGTTAAAC----CTT----CG--GGTA--ATT--ATTTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAATC--ACT-----ATACAAGGAATATAT----------TTTATT--GTAT-AATATAAATAAATC-GGATG-CGAACAG-----GCAA-----TTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAAT-TTAGAACAATCGCTGTTAAAC-----TT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTAAAGGATGAATGTAAAACTCGCCAA-TGAA-T-----ATACAAGGAATCTAT----------TT-------------TATAAATAAAAC-GGAT------------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---AT-AATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCT-GTTAACGGCCCACAATAACGTTGACACACTT-T--CAGATTTTTTTGTTCACAATTTTAATG--AATTCTCC--AATTACGCCCCAATCAC-ATTTTCATTCGATATAACGTCTCAATATGATTCAC--G-----CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAATGAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTTAAATTAGTTTTCATGTGAGAGTGa
gi|13 : AAGATAAGG---AGCTAT-TTA-TGTGACAGGGGACACCAATTCA----T-G-GGTT--GGC-CGTAAAAAA-GATTTTATTGTCAATGT-TT-GTATCC-T----TGACAATGATGACGTATATGACATT-----GA--CA-CCCCATT---ACACC-CGG-CTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACAAA-AACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGATTATTAATTTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTA-GCAATGA-ATT-ATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAA-TAC-TCACTGATTTTATTGAC---AATACTGAAAATG--TACTGTTA-AACA--Ta
gi|16 : AGATAAGGGG--GCTAT-TTA-TGT---GACAGAGATCA-C-CAAT--TCACGGGTTCGGC-G-TAAAAAAT-ATTTTATTGACAATGATCGTAT--CC-T----TGACGACGATGAC-------GTAT-------A--TA-AC--ATT--GACACC-C
gi|17 : ttaagTGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTATcattacatcgagctattatataatt
gi|18 : gtcggacaATAATATTT-ATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAATTTAA------ACTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTTTTCA-GATTCCCGATGATTATTATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCTAGGT-ATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTTCTGT----GAAGATGTAAATGCAAGGAT-A-GGGA--G------AAAATCTGATTGTATTGAAAATGA-CG-GG--CCGTTAAATGGTCATGATAACTT---TGATATT-----GATTTATAT--ATTCTGA------GGGCAACCTCAGACAGTGGTA---CAAATAGTTT-GGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCAT-A-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTCGTCACTGATGCGTG-T-ATTTTCA-ATACTA-TAACGGACTTCAGT-TTCATGAT--------------TCA--AATCACGCGCCGATttta
gi|2 : actatcgcagcaacagaaatcaaattctGAG---AA-A--GCAAATAAATAT------AATA---ATTGTGAAACGCGACATAAAACGCCAGTA--AATGCA-TATTTCAT--AA--ATA-AAAGTAATGTATTAAATAACAAATGGTTTGATCAAGAATGCAAA---CGAAAA-C--A-TGGGGTATACAAGGAGGC-AG----------TTTCTC--GTTTGAATTTAAGTAGGAC-AGCTG-A-AA-AT-----GAATACCTCCTCATGATA-AAT--AAAAAATACTATAAATATCATTGTAGAAttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|3 : actatcgcagcaacagaaatcaaattctgattttacaaacattattggagattatgatgttatttttttctaagtgagacatggacaggcaaaaactctaaattggacttaatggatttaaagtattccattcatatagaaaatttcaatataaaagagccaaacgtaaaagtggaggtattttagcatgtcagaaactctataataaaaggaattaaactgataaaaaatgatgtagactgtatattatggttaaaattagatcgaacattttttcagattcccgatgattattatctctgttgtacttctgtagcacctgaaaattcccccgtccatgctaggtatgattttgatatatttcgcaaattagaaatggatatcggatactttcaaaataagggaaaggtatatttctgtgaagatgtaaatgcaaggatagggagaaaatctgattgtattgaaaatgacgggccgttaaatggtcatgataactttgatattgatttatatattctgagggcaacctcagacagtggtacaaatagtttggtgagcacttgatagatttatgcaaattactacaaatgcgtatagttaatgagcgtctaggaacggacgcatatataggtcaatctacatgttttacaaataatggagaaagtgttgtcgattatctcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacaAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAA-TT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAA-A------ACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA-TAATGTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTTATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAACTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCAT----C-GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAATCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACC--T---TATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCA-TTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG-AGG---G--CATTA-G---CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAA-A--CTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAAATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAAAAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGT-GGTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCATT--CA---ATC-------
gi|5 : -GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAGGA--C--A------TTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGA-CAATGTGAGCAAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAATATGAACAA----GAACAACGACAG-AGG-GAGGAA-----AGTTATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTATAAACTT-CCAGAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCCTT--C-----TCTAATGAAAAGATAAGACCCAT----CT-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAATCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACATTTAAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----AT-AA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCT-ATTGACTTCCTATGAAAATTTTGAT-CATTTGT--CCAACTTTGAAGTACTTGATTTTAAT---AGTTTTTTTAAATCATGCACCAATAGC-ATATCC-TTTAACACAATGA--CAA----ATTTAC--AGTATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT-----T-T-TTACTGAATTT-TTGACTGTAA-GA-GGAAACTAGTATT-TTA-AACA--AACT-TCAAAA----CTT-----A--AACACCATT--A-TTTTATGTGCAAGGATG-AAAACAA------ACAAAA---ATGGTATAATAATGAATGTAAA------CAA-A--A-------AAAAAAGATATTTATAAAAACGCAGTTTA-CAAGTTT-AATTTAAATAAAACTGAAAA-T-AATAGATTAAATAT-----TT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|7 : ggacggttaTAATTTTGATACAGTA-A--TGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCT----AATCACGCG------GCGATTTTC-TTCGGAATAaaataattttaatagagatcaaag
gi|9 : taagacaatgcgtcaaatatttcgacactaatgAGTTCAGATG----ATCT-TTTAT-CGA-A-CATTACTGCATTCATCGAC---TT-AATGCAAATCAATATT-TCA-AGCA--TACTGTTAAAC----CCT----CG--GGTA--ATT--A--TTTTTGT-CAA--ATCTAAAAAAA------AAATAA---GTCGTTTAATAATTAATATAAAA-TCG---A-C--A-T-----AT---AAGAATCTAT----------TTCATT--ATAT-GATATAAATCGAAC-GGATGCC-AACAG-----GCAG-----TTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCgaaatattgtaatgaactctaccttataaaacccgagaacacatatctggcacgtgaaaaaataaacttgcttccataaacgaaataacggtaatattgatattgttgtgaagattttaataattgtaagaacagcaattgcgacctcgacgatatgtttaacaatatgaatatcttccagagaaaggtaatagatgtgaaacgcgacataaaatgccagtacaagcacattccataaacaaatgtaatgtattgaataacaaataatattatattatcacgaatgcaaatgaaatcttaatatatacaggcagtaagtgtgtggttttaatttaagtaggactgctgaacataaaccacatcatgataaattaaaagattatgaatagcattgcagaatacttaaaagtagatataacagatgagtaacaaatgaatgcaataaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 222 11 1 1 1 11 33333 222 222 555555 4444444 11 1 1 5555555555 1 4444444 1 1 1 77777777777777 1 1 1 111111 22222 11 222 2222 44444444444444 222 22 1 111 111111 2222 4444444 44444 1 111 1 1 1 1 1 55555555555555555 3333333 1 1 1 222 1 1 1 11 22222 1 1 77777777777777777777 11111 1 1111 1 111 1 1 2222 55555555555555555555555 111 33333333333333 111 22222 44444444444444444444444 1 1 222 1 11 1 2222 22222222222222 1 11111 1111 1111 1 1 333333 444444444 4444444444 22222 5555555555 22222 111 333333333 222222222 111 222222222222222 11 11 11 222222 111 444444444444444444444 44444444444444444444444 66666666666666666666666666 11 1
lowQualScore : 22 3 7 333 88 0 3 3 3 88 33333 3 1 6 333 77 6 0 333 111111 3333333 0 0 88 0 3 3 8888888888 3 3333333 3 3 3 88888888888888 3 1 6 3 0 0 2 0 999999 66666 88 111 1 4444 1 22222222222222 1 1 22 1 000 22 5 1 0 1 000 1 1 7777 3 333333 1111 1 2222222 8 44444 9 1 0 1 2 1 1 2 6 1 1 5 777 2 1 4 1 4 1 1 1 1 0 0 1 5 5 22 5 1 1 1 1 1 1 11111111111111111 0 2222222 2 2 0 4 0 0 2 0 4 0 1 1 1 1 22 1 0 1 0 3 33 2 1 1 1 1 5 1 111 2 5 5 1 5 1 1 88 1 77777 1 2 2 1 333 1 5 1 5 1 33333333333333333333 66666 1 7 7 0 88 3 0 0 1 0000 3 2 7 3 1 2 1 222 1 0 9 4444 0 0 1 3 33333333333333333333333 000 3 1 0 88888888888888 777 0 33333 88888888888888888888888 6 0 6 3 3 6 555 2 1 6 1 88 3 7 5 3333 7 1 33333333333333 1 1 1 9 0 1 0 1 1 0 0 3 0 77 66666 1 1 1 5 6666 7777 3 2 0 5 1 77 7 999999 2 000000000 3333333333 4 1 1 1 11 1 55555 22 88 7 2 0 0 1111111111 1 33333 0 111 111111111 1 3 4 777777777 1 6 6 555 888888888888888 11 11 88 8 11 8 333333 444 1 555555555555555555555 0 0 11111111111111111111111 1 8 33333333333333333333333333 3 00 0 6 0 3 7 3
lowQualScore : .. . . ... .. . . . . .. ..... . . . ... .. . . ... ...... ....... . . .. . . . .......... . ....... . . . .............. . . . . . . . . ...... ..... .. ... . .... . .............. . . .. . ... .. . . . . ... . . .... . ...... .... . ....... . ..... . . . . . . . . . . . . ... . . . . . . . . . . . . . . .. . . . . . . . ................. . ....... . . . . . . . . . . . . . . .. . . . . . .. . . . . . . . ... . . . . . . . .. . ..... . . . . ... . . . . . .................... ..... . . . . .. . . . . .... . . . . . . . ... . . . .... . . . . ....................... ... . . . .............. ... . ..... ....................... . . . . . . ... . . . . .. . . . .... . . .............. . . . . . . . . . . . . . .. ..... . . . . .... .... . . . . . .. . ...... . ......... .......... . . . . .. . ..... .. .. . . . . .......... . ..... . ... ......... . . . ......... . . . ... ............... .. .. .. . .. . ...... ... . ..................... . . ....................... . . .......................... . .. . . . . . .
lowQualScore : 00 7 3 333 33 7 3 3 3 33 33333 7 0 7 333 33 7 7 333 333333 3333333 7 7 33 7 3 3 3333333333 3 3333333 3 3 3 33333333333333 7 0 7 3 7 7 0 0 222222 55555 00 000 0 0000 0 55555555555555 0 0 00 0 555 00 0 0 2 0 222 0 0 5555 2 222222 2222 0 8888888 8 55555 8 0 2 0 5 0 0 5 5 0 0 5 000 5 0 2 0 2 0 0 0 0 0 0 0 5 5 00 0 0 0 0 0 0 0 00000000000000000 7 3333333 5 0 2 2 5 0 0 2 2 2 0 0 0 0 88 0 7 0 8 2 55 5 0 0 0 0 5 0 000 5 5 5 0 0 0 0 55 0 00000 0 5 5 0 000 0 5 0 5 0 77777777777777777777 77777 0 3 3 7 33 3 7 7 0 2222 2 5 3 3 0 5 0 000 0 0 0 5555 2 8 0 2 55555555555555555555555 555 2 0 2 22222222222222 555 2 88888 88888888888888888888888 5 0 7 7 3 7 777 0 0 7 0 33 7 3 5 5555 3 0 00000000000000 0 0 0 8 2 2 2 0 0 0 2 2 8 22 66666 4 0 0 6 6666 4444 2 5 0 5 2 77 3 333333 5 000000000 8888888888 2 0 0 0 88 2 00000 88 22 0 5 8 8 0000000000 2 88888 2 222 222222222 0 2 2 666666666 0 7 7 222 444444444444444 00 00 88 0 00 0 000000 000 4 000000000000000000000 8 8 00000000000000000000000 4 0 66666666666666666666666666 8 88 6 0 6 2 3 3
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAAC-G-GAGA--G--CATTA-G---CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAA-AATC--AACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAAATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTTA-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCATT--CA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACATAAAAAGGTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGAT---AACTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAAC-AAAACTTCAGATATCGACTTCAAAGGGTAT--AGTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTA-TTTTTTAATATTGATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAACATGT-ATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAAATAT-TTATTGT---AGGAGATATGAAT---AG--T-A-GAGT--AGCTT-TAAAAACCGA-TACATAGATAATGA-CA-G-------A-AACA---TTGAGCAATT---TGATTTTCTCAAAG--TAGAC--AATCCAATACCTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAA-GG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCT-GTTAACGGCCCACAATAACTTTGACACACTT-T--CAGATTTTTGTGTTCACAATTTTAACG--AATTCTCC--AATCATGCCCCAATCAC-ATTTTCATTCGATATAACGCCTCAATATGAATCACGTG--ATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-CGAGT-C-TCACTGACTTCATGGACA--AA-AATGCAAATAAATATT-TCA-GGCA--TACTGTTAAAC----CTT----CG--GGTA--ATT--ATTTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAATC--ACT-----ATACAAGGAATATAT----------TTTATT--GTAT-AATATAAATAAATC-GGATG-CGAACAG-----GCAA-----TTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAAT-TTAGAACAATCGCTGTTAAAC-----TT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTAAAGGATGAATGTAAAACTCGCCAA-TGAA-T-----ATACAAGGAATCTAT----------TT-------------TATAAATAAAAC-GGAT------------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---AT-AATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCT-GTTAACGGCCCACAATAACGTTGACACACTT-T--CAGATTTTTTTGTTCACAATTTTAATG--AATTCTCC--AATTACGCCCCAATCAC-ATTTTCATTCGATATAACGTCTCAATATGATTCAC--G-----CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAATGAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTTAAATTAGTTTTCATGTGAGAGTGa
gi|13 : AAGATAAGG---AGCTAT-TTA-TGTGACAGGGGACACCAATTCA----T-G-GGTT--GGC-CGTAAAAAA-GATTTTATTGTCAATGT-TT-GTATCC-TT-GACA---ATGATGACGTATATGACATT-----GA--CA-CCCCATT---ACACC-CGG-CTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACAAA-AACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGATTATTAATTTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTA-GCAATGA-ATT-ATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAA-TAC-TCACTGATTTTATTGAC---AATACTGAAAATG--TACTGTTA-AACA--Ta
gi|16 : AGATAAGGGG--GCTAT-TTA-TGT---GACAGAGATCA-C-CAAT--TCACGGGTTCGGC-G-TAAAAAAT-ATTTTATTGACAATGATCGTAT--CC-TT-GACG---ACGATGAC-------GTAT-------A--TA-AC--ATT--GACACC-C
gi|17 : ttaagTGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTATcattacatcgagctattatataatt
gi|18 : gtcggacaATAATATTT-ATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAATTTAA------ACTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTTTTCA-GATTCCCGATGATTATTATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCTAGGT-ATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTTCTGT----GAAGATGTAAATGCAAGGAT-A-GGGA--G------AAAATCTGATTGTATTGAAAATGA-CG-GG--CCGTTAAATGGTCATGATAACTT---TGATATT-----GATTTATAT--ATTCTGA------GGGCAACCTCAGACAGTGGTA---CAAATAGTTT-GGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCAT-A-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTCGTCACTGATGCGTG-T-ATTTTCA-ATACTA-TAACGGACTTCAGT-TTCATGAT--------------TCA--AATCACGCGCCGATttta
gi|2 : actatcgcagcaacagaaatcaaattctGAG---AA-A--GCAAATAAATAT------AATA---ATTGTGAAACGCGACATAAAACGCCAGTA--AATGCA-TATTTCAT--AA--ATA-AAAGTAATGTATTAAATAACAAATGGTTTGATCAAGAATGCAAA---CGAAAA-C--A-TGGGGTATACAAGGAGGC-AG----------TTTCTC--GTTTGAATTTAAGTAGGAC-AGCTG-A-AA-AT-----GAATACCTCCTCATGATA-AAT--AAAAAATACTATAAATATCATTGTAGAAttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|3 : actatcgcagcaacagaaatcaaattctgattttacaaacattattggagattatgatgttatttttttctaagtgagacatggacaggcaaaaactctaaattggacttaatggatttaaagtattccattcatatagaaaatttcaatataaaagagccaaacgtaaaagtggaggtattttagcatgtcagaaactctataataaaaggaattaaactgataaaaaatgatgtagactgtatattatggttaaaattagatcgaacattttttcagattcccgatgattattatctctgttgtacttctgtagcacctgaaaattcccccgtccatgctaggtatgattttgatatatttcgcaaattagaaatggatatcggatactttcaaaataagggaaaggtatatttctgtgaagatgtaaatgcaaggatagggagaaaatctgattgtattgaaaatgacgggccgttaaatggtcatgataactttgatattgatttatatattctgagggcaacctcagacagtggtacaaatagtttggtgagcacttgatagatttatgcaaattactacaaatgcgtatagttaatgagcgtctaggaacggacgcatatataggtcaatctacatgttttacaaataatggagaaagtgttgtcgattatctcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacaAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAA-TT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAA-A------ACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA-TAATGTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTTATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAACTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCAT----C-GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAATCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACC--T---TATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCA-TTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG-AGG---G--CATTA-G---CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAA-A--CTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAAATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAAAAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGT-GGTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCATT--CA---ATC-------
gi|5 : -GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAGGA--C--A------TTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGA-CAATGTGAGCAAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAATATGAACAA----GAACAACGACAG-AGG-GAGGAA-----AGTTATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTATAAACTT-CCAGAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCCTT--C-----TCTAATGAAAAGATAAGACCCAT----CT-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAATCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACATTTAAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----AT-AA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCT-ATTGACTTCCTATGAAAATTTTGAT-CATTTGT--CCAACTTTGAAGTACTTGATTTTAAT---AGTTTTTTTAAATCATGCACCAATAGC-ATATCC-TTTAACACAATGA--CAA----ATTTAC--AGTATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT-----T-T-TTACTGAATTT-TTGACTGTAA-GA-GGAAACTAGTATT-TTA-AACA--AACT-TCAAAA----CTT-----A--AACACCATT--A-TTTTATGTGCAAGGATG-AAAACAA------ACAAAA---ATGGTATAATAATGAATGTAAA------CAA-A--A-------AAAAAAGATATTTATAAAAACGCAGTTTA-CAAGTTT-AATTTAAATAAAACTGAAAA-T-AATAGATTAAATAT-----TT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|7 : ggacggttaTAATTTTGATACAGTA-A--TGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCT----AATCACGCG------GCGATTTTC-TTCGGAATAaaataattttaatagagatcaaag
gi|9 : taagacaatgcgtcaaatatttcgacactaatgAGTTCAGATG----ATCT-TTTAT-CGA-A-CATTACTGCATTCATCGAC---TT-AATGCAAATCAATATT-TCA-AGCA--TACTGTTAAAC----CCT----CG--GGTA--ATT--A--TTTTTGT-CAA--ATCTAAAAAAA------AAATAA---GTCGTTTAATAATTAATATAAAA-TCG---A-C--A-T-----AT---AAGAATCTAT----------TTCATT--ATAT-GATATAAATCGAAC-GGATGCC-AACAG-----GCAG-----TTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCgaaatattgtaatgaactctaccttataaaacccgagaacacatatctggcacgtgaaaaaataaacttgcttccataaacgaaataacggtaatattgatattgttgtgaagattttaataattgtaagaacagcaattgcgacctcgacgatatgtttaacaatatgaatatcttccagagaaaggtaatagatgtgaaacgcgacataaaatgccagtacaagcacattccataaacaaatgtaatgtattgaataacaaataatattatattatcacgaatgcaaatgaaatcttaatatatacaggcagtaagtgtgtggttttaatttaagtaggactgctgaacataaaccacatcatgataaattaaaagattatgaatagcattgcagaatacttaaaagtagatataacagatgagtaacaaatgaatgcaataaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 222 11 1 1 1 11 33333 222 222 555555 4444444 11 1 1 5555555555 1 4444444 1 1 1 77777777777777 1 1 1 111111 22222 11 222 2222 44444444444444 222 22 1 111 111111 2222 4444444 44444 1 111 1 1 1 1 1 55555555555555555 3333333 1 1 1 222 1 1 1 11 22222 1 1 77777777777777777777 11111 1 1111 1 111 1 1 2222 55555555555555555555555 111 33333333333333 111 22222 44444444444444444444444 1 1 222 1 11 1 2222 22222222222222 1 11111 1111 1111 1 1 333333 444444444 4444444444 22222 5555555555 22222 111 333333333 222222222 111 222222222222222 11 11 11 222222 111 444444444444444444444 44444444444444444444444 66666666666666666666666666 11 1
lowQualScore : 22 3 7 333 88 0 3 3 3 88 33333 3 1 6 333 77 6 0 333 111111 3333333 0 0 88 0 3 3 8888888888 3 3333333 3 3 3 88888888888888 3 1 6 3 0 0 2 0 999999 66666 88 111 1 4444 1 22222222222222 1 1 22 1 000 22 5 1 0 1 000 1 1 7777 3 333333 1111 1 2222222 8 44444 9 1 0 1 2 1 1 2 6 1 1 5 777 2 1 4 1 4 1 1 1 1 0 0 1 5 5 22 5 1 1 1 1 1 1 11111111111111111 0 2222222 2 2 0 4 0 0 2 0 4 0 1 1 1 1 22 1 0 1 0 3 33 2 1 1 1 1 5 1 111 2 5 5 1 5 1 1 88 1 77777 1 2 2 1 333 1 5 1 5 1 33333333333333333333 66666 1 7 7 0 88 3 0 0 1 0000 3 2 7 3 1 2 1 222 1 0 9 4444 0 0 1 3 33333333333333333333333 000 3 1 0 88888888888888 777 0 33333 88888888888888888888888 6 0 6 3 3 6 555 2 1 6 1 88 3 7 5 3333 7 1 33333333333333 1 1 1 9 0 1 0 1 1 0 0 3 0 77 66666 1 1 1 5 6666 7777 3 2 0 5 1 77 7 999999 2 000000000 3333333333 4 1 1 1 11 1 55555 22 88 7 2 0 0 1111111111 1 33333 0 111 111111111 1 3 4 777777777 1 6 6 555 888888888888888 11 11 88 8 11 8 333333 444 1 555555555555555555555 0 0 11111111111111111111111 1 8 33333333333333333333333333 3 00 0 6 0 3 7 3
lowQualScore : .. . . ... .. . . . . .. ..... . . . ... .. . . ... ...... ....... . . .. . . . .......... . ....... . . . .............. . . . . . . . . ...... ..... .. ... . .... . .............. . . .. . ... .. . . . . ... . . .... . ...... .... . ....... . ..... . . . . . . . . . . . . ... . . . . . . . . . . . . . . .. . . . . . . . ................. . ....... . . . . . . . . . . . . . . .. . . . . . .. . . . . . . . ... . . . . . . . .. . ..... . . . . ... . . . . . .................... ..... . . . . .. . . . . .... . . . . . . . ... . . . .... . . . . ....................... ... . . . .............. ... . ..... ....................... . . . . . . ... . . . . .. . . . .... . . .............. . . . . . . . . . . . . . .. ..... . . . . .... .... . . . . . .. . ...... . ......... .......... . . . . .. . ..... .. .. . . . . .......... . ..... . ... ......... . . . ......... . . . ... ............... .. .. .. . .. . ...... ... . ..................... . . ....................... . . .......................... . .. . . . . . .
lowQualScore : 00 7 3 333 33 7 3 3 3 33 33333 7 0 7 333 33 7 7 333 333333 3333333 7 7 33 7 3 3 3333333333 3 3333333 3 3 3 33333333333333 7 0 7 3 7 7 0 0 222222 55555 00 000 0 0000 0 55555555555555 0 0 00 0 555 00 0 0 2 0 222 0 0 5555 2 222222 2222 0 8888888 8 55555 8 0 2 0 5 0 0 5 5 0 0 5 000 5 0 2 0 2 0 0 0 0 0 0 0 5 5 00 0 0 0 0 0 0 0 00000000000000000 7 3333333 5 0 2 2 5 0 0 2 2 2 0 0 0 0 88 0 7 0 8 2 55 5 0 0 0 0 5 0 000 5 5 5 0 0 0 0 55 0 00000 0 5 5 0 000 0 5 0 5 0 77777777777777777777 77777 0 3 3 7 33 3 7 7 0 2222 2 5 3 3 0 5 0 000 0 0 0 5555 2 8 0 2 55555555555555555555555 555 2 0 2 22222222222222 555 2 88888 88888888888888888888888 5 0 7 7 3 7 777 0 0 7 0 33 7 3 5 5555 3 0 00000000000000 0 0 0 8 2 2 2 0 0 0 2 2 8 22 66666 4 0 0 6 6666 4444 2 5 0 5 2 77 3 333333 5 000000000 8888888888 2 0 0 0 88 2 00000 88 22 0 5 8 8 0000000000 2 88888 2 222 222222222 0 2 2 666666666 0 7 7 222 444444444444444 00 00 88 0 00 0 000000 000 4 000000000000000000000 8 8 00000000000000000000000 4 0 66666666666666666666666666 8 88 6 0 6 2 3 3
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAAC-G-GAGA--G--CATTA-G---CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAA-AATC--AACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAAATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTTA-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCATT--CA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACATAAAAAGGTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGAT---AACTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAAC-AAAACTTCAGATATCGACTTCAAAGGGTAT--AGTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTA-TTTTTTAATATTGATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAACATGT-ATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAAATAT-TTATTGT---AGGAGATATGAAT---AG--T-A-GAGT--AGCTT-TAAAAACCGA-TACATAGATAATGA-CA-G-------A-AACA---TTGAGCAATT---TGATTTTCTCAAAG--TAGAC--AATCCAATACCTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAA-GG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCT-GTTAACGGCCCACAATAACTTTGACACACTT-T--CAGATTTTTGTGTTCACAATTTTAACG--AATTCTCC--AATCATGCCCCAATCAC-ATTTTCATTCGATATAACGCCTCAATATGAATCACGTG--ATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-CGAGT-C-TCACTGACTTCATGGACA--AA-AATGCAAATAAATATT-TCA-GGCA--TACTGTTAAAC----CTT----CG--GGTA--ATT--ATTTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAATC--ACT-----ATACAAGGAATATAT----------TTTATT--GTAT-AATATAAATAAATC-GGATG-CGAACAG-----GCAA-----TTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAAT-TTAGAACAATCGCTGTTAAAC-----TT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTAAAGGATGAATGTAAAACTCGCCAA-TGAA-T-----ATACAAGGAATCTAT----------TT-------------TATAAATAAAAC-GGAT------------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---AT-AATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCT-GTTAACGGCCCACAATAACGTTGACACACTT-T--CAGATTTTTTTGTTCACAATTTTAATG--AATTCTCC--AATTACGCCCCAATCAC-ATTTTCATTCGATATAACGTCTCAATATGATTCAC--G-----CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAATGAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTTAAATTAGTTTTCATGTGAGAGTGa
gi|13 : AAGATAAGG---AGCTAT-TTA-TGTGACAGGGGACACCAATTCA----T-G-GGTT--GGC-CGTAAAAAA-GATTTTATTGTCAATGT-TT-GTATCC-TT-GACA---ATGATGACGTATATGACATT-----GA--CA-CCCCATT---ACACC-CGG-CTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACAAA-AACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGATTATTAATTTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTA-GCAATGA-ATT-ATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAA-TAC-TCACTGATTTTATTGAC---AATACTGAAAATG--TACTGTTA-AACA--Ta
gi|16 : AGATAAGGGG--GCTAT-TTA-TGT---GACAGAGATCA-C-CAAT--TCACGGGTTCGGC-G-TAAAAAAT-ATTTTATTGACAATGATCGTAT--CC-TT-GACG---ACGATGAC-------GTAT-------A--TA-AC--ATT--GACACC-C
gi|17 : ttaagTGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTATcattacatcgagctattatataatt
gi|18 : gtcggacaATAATATTT-ATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAATTTAA------ACTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTTTTCA-GATTCCCGATGATTATTATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCTAGGT-ATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTTCTGT----GAAGATGTAAATGCAAGGAT-A-GGGA--G------AAAATCTGATTGTATTGAAAATGA-CG-GG--CCGTTAAATGGTCATGATAACTT---TGATATT-----GATTTATAT--ATTCTGA------GGGCAACCTCAGACAGTGGTA---CAAATAGTTT-GGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCAT-A-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTCGTCACTGATGCGTG-T-ATTTTCA-ATACTA-TAACGGACTTCAGT-TTCATGAT--------------TCA--AATCACGCGCCGATttta
gi|2 : actatcgcagcaacagaaatcaaattctGAG---AA-A--GCAAATAAATAT------AATA---ATTGTGAAACGCGACATAAAACGCCAGTA--AATGCA-TATTTCAT--AA--ATA-AAAGTAATGTATTAAATAACAAATGGTTTGATCAAGAATGCAAA---CGAAAA-C--A-TGGGGTATACAAGGAGGC-AG----------TTTCTC--GTTTGAATTTAAGTAGGAC-AGCTG-A-AA-AT-----GAATACCTCCTCATGATA-AAT--AAAAAATACTATAAATATCATTGTAGAAttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|3 : actatcgcagcaacagaaatcaaattctgattttacaaacattattggagattatgatgttatttttttctaagtgagacatggacaggcaaaaactctaaattggacttaatggatttaaagtattccattcatatagaaaatttcaatataaaagagccaaacgtaaaagtggaggtattttagcatgtcagaaactctataataaaaggaattaaactgataaaaaatgatgtagactgtatattatggttaaaattagatcgaacattttttcagattcccgatgattattatctctgttgtacttctgtagcacctgaaaattcccccgtccatgctaggtatgattttgatatatttcgcaaattagaaatggatatcggatactttcaaaataagggaaaggtatatttctgtgaagatgtaaatgcaaggatagggagaaaatctgattgtattgaaaatgacgggccgttaaatggtcatgataactttgatattgatttatatattctgagggcaacctcagacagtggtacaaatagtttggtgagcacttgatagatttatgcaaattactacaaatgcgtatagttaatgagcgtctaggaacggacgcatatataggtcaatctacatgttttacaaataatggagaaagtgttgtcgattatctcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacaAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAA-TT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAA-A------ACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA-TAATGTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTTATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAACTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCAT----C-GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAATCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACC--T---TATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCA-TTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG-AGG---G--CATTA-G---CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAA-A--CTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAAATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAAAAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGT-GGTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCATT--CA---ATC-------
gi|5 : -GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAGGA--C--A------TTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGA-CAATGTGAGCAAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAATATGAACAA----GAACAACGACAG-AGG-GAGGAA-----AGTTATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTATAAACTT-CCAGAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCCTT--C-----TCTAATGAAAAGATAAGACCCAT----CT-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAATCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACATTTAAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----AT-AA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCT-ATTGACTTCCTATGAAAATTTTGAT-CATTTGT--CCAACTTTGAAGTACTTGATTTTAAT---AGTTTTTTTAAATCATGCACCAATAGC-ATATCC-TTTAACACAATGA--CAA----ATTTAC--AGTATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT-----T-T-TTACTGAATTT-TTGACTGTAA-GA-GGAAACTAGTATT-TTA-AACA--AACT-TCAAAA----CTT-----A--AACACCATT--A-TTTTATGTGCAAGGATG-AAAACAA------ACAAAA---ATGGTATAATAATGAATGTAAA------CAA-A--A-------AAAAAAGATATTTATAAAAACGCAGTTTA-CAAGTTT-AATTTAAATAAAACTGAAAA-T-AATAGATTAAATAT-----TT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|7 : ggacggttaTAATTTTGATACAGTA-A--TGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCT----AATCACGCG------GCGATTTTC-TTCGGAATAaaataattttaatagagatcaaag
gi|9 : taagacaatgcgtcaaatatttcgacactaatgAGTTCAGATG----ATCT-TTTAT-CGA-A-CATTACTGCATTCATCGAC---TT-AATGCAAATCAATATT-TCA-AGCA--TACTGTTAAAC----CCT----CG--GGTA--ATT--A--TTTTTGT-CAA--ATCTAAAAAAA------AAATAA---GTCGTTTAATAATTAATATAAAA-TCG---A-C--A-T-----AT---AAGAATCTAT----------TTCATT--ATAT-GATATAAATCGAAC-GGATGCC-AACAG-----GCAG-----TTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCgaaatattgtaatgaactctaccttataaaacccgagaacacatatctggcacgtgaaaaaataaacttgcttccataaacgaaataacggtaatattgatattgttgtgaagattttaataattgtaagaacagcaattgcgacctcgacgatatgtttaacaatatgaatatcttccagagaaaggtaatagatgtgaaacgcgacataaaatgccagtacaagcacattccataaacaaatgtaatgtattgaataacaaataatattatattatcacgaatgcaaatgaaatcttaatatatacaggcagtaagtgtgtggttttaatttaagtaggactgctgaacataaaccacatcatgataaattaaaagattatgaatagcattgcagaatacttaaaagtagatataacagatgagtaacaaatgaatgcaataaaa
blockSeqs : AT A T GGG AA C A A GG GAAAA C A G TTT CA C CTT ATTCAA TATGACT AC . G TCAAAATATG T AAATTTT C C A TAATTCGCTACTCA T A C C A C ATTGGA TGGAT TG ACA G TTAG T ACTAAACGATC T A CA T GCT AA G T C AAA A T GAAA A ATCTTT ATAT G TAACGAC G CTG T T T C C C C G G A A GAA C A A C C A T C T . C T A T AA G C C C A T C TTCAAATGAA CG C T C G . T T A C C C AT A C T AT T A T A T . T CTA A A . G . T T AA T . A A A C AAA A . G . C TCTATTCACACAAGTGTCAA CAAA A T A TT . C GCA T G A A T C A GAA C A C GACA C A CAATTCACGGGTTCGGCG CTG T T TTGTATCCTT GTC GTATA TGATTTATATATTCTG C . G T A G GCT T T G T CT C A A GTCT T T GGATAATGG T A T A A C C C A CA ATAA A T A T GTCC TTTA C C G A T TC T AGTA G ACTACAAGA TAGAGATGGG G G C A AG A CAAAC GG AA T C GATATATT A GTTTT CCG CCAATAC T A T TGTAAGA A G G ATC GCGACATAAAACGCC CC GC T G GG T TGTATT CAA G ACTCGCCAATGAAT AAAAACGCAGTTTACAAGTTT A T GAAAATGAATACCTCCTC A TC A T T C
blockSeqs : C . . . . . . . . G T . . G . . T . . . . . . . . . . . A T . . G . ATTG TGGAT . ACA T . A AACA G C GC A GCT . . A A ATT C A AAC A AAAATA . T CGACAG C T A A A A G A G G T T A CC A T A G T C A A G . . A A . CT G A A G T A A CTCTAATGAA CT G T G A . T T C A A A CG T G T AC G A AAG TGTA T T . CT . A TTT T G . . G GG C . . G C A TCATGGGTTGGCCG AG T T TCGTATCCTT . TT TGACACCCCATT C . . A . . . . G . A . A . . A GACGCATA A T A A T G G . A TA TGT G A A T GA CC G A . . C A . G G . . T T A T TC A . GA AT C C TTC G G AA CGAACA A A T AATACT G . . T CCTCG . . T . . . . . C CGAAAACATGGGGT TTTCTCGTTTG T . ATAATAGATTAAATATTT A TA T T . .
blockSeqs : . G G . . G . T GACA T A CG T . . . T C . A T TA . . . A AA . . T T T C C C C . G A . CC C A G C A A T C T . . T . . GA . C C C G T C CAATC C T A A . T G A T C C AG T T . . C GGT . . . G . . . A . GCAAGGATAGGGAG AT T G CGGGCCGTTA . . ATAACATTG . . A ATAAGAA G C A . G G A . . A TT C G T G A CA A . . . A . . . A T A T AT G . . G . . T . TT TT A . C TTAAT A . . A TTCG . . T . . . . . A ATCGACAT TTCATTATAT T . GCCAACAGGCAGTTG T T A .
blockSeqs : T AA G T C . . . G AAA T . . T CTTA . . . . . . . . A CAAAA TT A . . . . .
blockSeqs : C . . .
blockSeqCons : G*** TAAA***** CNCG*********** T* TCTCGCT**************** GAACGGTT******************
originalCons : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG--AATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGAC---AA-AATGCAAATNAATATT-TTA-AACA--TACTGTTAAAC----CTT----CG--GGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTAT----------TTTATC--GTNT-AATATAAATAAAAC-GGATG-C-AACAG-----GCAN-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
finalCons : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG---ATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGACTAAA-----GCAAATNAATATT-TTA-AACA--TACTGTTAAACCNCG-----------GGTA--ATT--AT-TTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATCTATTCTCGCT----------------AATATAAATAAAAC-GGATGAACGGTT------------------ATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 11 1 1 1 11 33333 222 222 555555 4444444 11 1 1 5555555555 1 4444444 1 1 1 77777777777777 1 1 1 111111 22222 11 222 2222 44444444444444 222 22 1 111 111111 2222 4444444 44444 1 111 1 1 1 1 1 55555555555555555 3333333 1 1 1 222 1 1 1 11 22222 1 1 77777777777777777777 11111 1 1111 1 111 1 1 2222 55555555555555555555555 111 33333333333333 111 22222 44444444444444444444444 1 1 222 1 11 1 2222 22222222222222 1 11111 333 1111 1 1 333333 444444444 4444444444 22222 5555555555 22222 111 333333333 333333333 111 3333333333333333 11 11 11 222222 111 444444444444444444444 11 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 1
lowQualScore : 22 3 7 333 88 0 3 3 3 88 33333 3 1 6 333 77 6 0 333 111111 3333333 0 0 88 0 3 3 8888888888 3 3333333 3 3 3 88888888888888 3 1 6 3 0 0 2 0 999999 66666 88 111 1 4444 1 22222222222222 1 1 22 1 000 22 5 1 0 1 000 1 1 7777 3 333333 1111 1 2222222 8 44444 9 1 0 1 2 1 1 2 6 1 1 5 777 2 1 4 1 4 1 1 1 1 0 0 1 5 5 22 5 1 1 1 1 1 1 11111111111111111 0 2222222 2 2 0 4 0 0 2 0 4 0 1 1 1 1 22 1 0 1 0 3 33 2 1 1 1 1 5 1 111 2 5 5 1 5 1 1 88 1 77777 1 2 2 1 333 1 5 1 5 1 33333333333333333333 66666 1 7 7 0 88 3 0 0 1 0000 3 2 7 3 1 2 1 222 1 0 9 4444 0 0 1 3 33333333333333333333333 000 3 1 0 88888888888888 777 0 33333 88888888888888888888888 6 0 6 3 3 6 555 2 1 6 1 88 3 7 5 3333 7 1 33333333333333 1 1 1 9 0 1 0 1 1 0 0 3 0 77 66666 1 1 1 5 000 7777 3 2 0 5 1 77 7 999999 2 000000000 3333333333 4 1 1 1 11 1 55555 22 88 7 2 0 0 1111111111 1 33333 0 111 111111111 1 3 4 888888888 3 4 6 555 4444444444444444 11 11 88 8 11 8 333333 444 1 555555555555555555555 0 11 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 00 0 6 0 3 7 3
lowQualScore : .. . . ... .. . . . . .. ..... . . . ... .. . . ... ...... ....... . . .. . . . .......... . ....... . . . .............. . . . . . . . . ...... ..... .. ... . .... . .............. . . .. . ... .. . . . . ... . . .... . ...... .... . ....... . ..... . . . . . . . . . . . . ... . . . . . . . . . . . . . . .. . . . . . . . ................. . ....... . . . . . . . . . . . . . . .. . . . . . .. . . . . . . . ... . . . . . . . .. . ..... . . . . ... . . . . . .................... ..... . . . . .. . . . . .... . . . . . . . ... . . . .... . . . . ....................... ... . . . .............. ... . ..... ....................... . . . . . . ... . . . . .. . . . .... . . .............. . . . . . . . . . . . . . .. ..... . . . . ... .... . . . . . .. . ...... . ......... .......... . . . . .. . ..... .. .. . . . . .......... . ..... . ... ......... . . . ......... . . . ... ................ .. .. .. . .. . ...... ... . ..................... . .. . .................................................................................... . .. . . . . . .
lowQualScore : 00 7 3 333 33 7 3 3 3 33 33333 7 0 7 333 33 7 7 333 333333 3333333 7 7 33 7 3 3 3333333333 3 3333333 3 3 3 33333333333333 7 0 7 3 7 7 0 0 222222 55555 00 000 0 0000 0 55555555555555 0 0 00 0 555 00 0 0 2 0 222 0 0 5555 2 222222 2222 0 8888888 8 55555 8 0 2 0 5 0 0 5 5 0 0 5 000 5 0 2 0 2 0 0 0 0 0 0 0 5 5 00 0 0 0 0 0 0 0 00000000000000000 7 3333333 5 0 2 2 5 0 0 2 2 2 0 0 0 0 88 0 7 0 8 2 55 5 0 0 0 0 5 0 000 5 5 5 0 0 0 0 55 0 00000 0 5 5 0 000 0 5 0 5 0 77777777777777777777 77777 0 3 3 7 33 3 7 7 0 2222 2 5 3 3 0 5 0 000 0 0 0 5555 2 8 0 2 55555555555555555555555 555 2 0 2 22222222222222 555 2 88888 88888888888888888888888 5 0 7 7 3 7 777 0 0 7 0 33 7 3 5 5555 3 0 00000000000000 0 0 0 8 2 2 2 0 0 0 2 2 8 22 66666 4 0 0 6 000 4444 2 5 0 5 2 77 3 333333 5 000000000 8888888888 2 0 0 0 88 2 00000 88 22 0 5 8 8 0000000000 2 88888 2 222 222222222 0 2 2 333333333 3 3 7 222 7777777777777777 00 00 88 0 00 0 000000 000 4 000000000000000000000 8 00 8 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 88 6 0 6 2 3 3
consensus : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATGA--ATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGACT---AAA--GCAAATAAATATTTCA-AACA--TACTGTTAAA-C-----------C-TCGGGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATC--TAT----------TT--T-CG---T-T--A----ATATAAATAAAACGGA-----------T--G--AA-A--CAG--A-----TTGATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
Reference ( family-1277 ) : NNNNNNNNNNNNNNNNCTATTCCAANNAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCGGAC-TGT-TCAAAAGTG-GAAA--ACAAC-----AATGGCTCGAAATGGCGCGAATTTACCACAAANACCGCAG---CCTACGTCACAAACTATCGGACATGGAGCGAA---TGGACAACACCAGGCAAGTCAACC--T--ATATATGACAACC-------CCAACGTATCCGCG--CAATTCGCCA-TT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGTAATAATGCAAAGGCTNTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCGTGAGCGATATAACGG-GAGATTG--CATTATGGATCAGAATGGATCAACGACATGNAGAGAAATTAGAANGCAA-A--C--AACGATCTNGAANATAGTNNTTCNTTTGACGCTAGCTCAATAGTGAGCGANGTTAGCAAAAAACAANAAGAAATTGAAGNTNTGGTAACAAAAATGCAATCTTTTGAAAGA----GANCAACAACGG-AGTCGAGGAA--T--AGTTATAAGNCGGANATCACGGACATGAAATGCCGNAGCATGNGCGACAATCTGATNTTTTNTAAACTTGNNAGAAGAAAGGGGCGAAAACTGTGNCACGAAGGTNCTCGANTTTATNGAANANGA-GTTGA-AGCCNGTAAATGCTGNNAGCGGAAATNAAACTNCANCGCGCNCACAGGATCGGNGCNTT--CA---GTC-------AAGATAAGACCCGT----CTGTTGCCAAATTCGCCTATTACCCAGATAGAGAGCGCGTGCGAAAATCAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATCGGAGAGCAATTCCCGAAGGAAATAGTCGACATCCGCCGGAAGTTGGTACCGATCATGAAGNAGGCCAGGCAGGANGGGNANGACGCGTNCATAAACATCGATAAACTNTACATTGATAACCATTTGTACAGAGGAAATTTAAACTAGGACTCATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGCAAACNTNATTGGNGATNATGATGTTATATNTTTTCTAAGCGAGACATGGACCGGCAAAAACTCCAGATATNGACTTCAANGGGTNTAAAGTANTCCTATTCATTCGTNTAGACGATTTCAGCACCGAAGGGCNAAACGCNNNAGCGGNGGTATCATTANCTATGTCAGANACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGACGTA-GACTGTATANTATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCCGATGATTATTATTTNTGTTGT-ACTTATGTAGCGCCTGAAAATTCCCCCGTTCATGNTATGT-ATGATATTGATATTTTTAGACAAATT-GAAAANGATATCGGNTACTTCCAAGATAAGGGGAAGNTAT-TTACTGT---AGGAGATATNAAT-CAAG--T-A-GGGT--GGC-N-TAAAAANTGATTNTATTGACAATGA-CG-GT--CC-TT-GACG---ATGATGACTT---TGATATT-----GA--TA-AC--ATTCCGACACC-CGGGCGACCTCAGAC-TTGGTA--TCAAATCGTTTCGGTGANTATTTAATTGATTTNTGCAAATTA--ACGAATATACGTATTGTTAATGAGCGTCTAGGTTACANCGGG---AT-AA-GG-TNTAGGTAAANTTNCATGCGTAACACATAATGGANAGAGCNTAGTCGACTACCT-GTTAACGGCCCACGATAATTTTGACACACTT-T--CGGACTTTTGTGTTCACGATTTTAATG---ATTCTCC--AATCACGCGCCAATCGC-ATTTTCATTCGATATAACGNCTCAATATGATTCAC--G--ATACAAGAAAAT---------ACGTTT----------ATTACGAGCGNAAACCNGANTTTAAAAACGATNTTATAAATGGCATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTATTAGATG--ATA-ATCCAATAACTGTAGTACTGATG----AGCT-NGTAT-CGA-T-C-TCACTGANTTCATCGACT---AAA--GCAAATNAATATTTTA-AACA--TACTGTTAAA-C-----------C-NCGGGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAA-C--A-T-----ATACAAGGAATC--TAT----------TC--T-CG---C-T--A----ATATAAATAAAACGGA-----------T--G--AA----CGG--------TT-ATGNTACAATCGAAAAAGAATTATAAATATTATTGTAGAAAATGTAAATAT-GCGTACAATC
gi|1 : CTATTCCAATGAGGAATAAATGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAGAG-GAAA--ACAAC-----AATGGCTCAAAATGGCGCGAAATTGCCACAAACACCGCAG---CCTACATCACAAACTATCGGACATGGAGCAAA---TGGACAATACCAGGCAAGTCAACC-----ATATATGACAACC-------CCAATGTATCCGTG--CAATTCACCATTT-ATAA----------GC-ATGAATTCTGGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCGGCAATAATGCAAAGGCTCTGTTCAATGGACCAGAAATTGGCCCA-ATTAGATACAATTCAGTCGACCATGAGCAATATAAC-G-GAGA--G--CATTA-G---CAAAATGGATCAACG---TGTAGAGAAATTAGAAAATAA-AATC--AACGATCTGGAACATAGTGCTTCATTCGAC---AACTCAATAGTGAGCGAAATTAATAAAAAACAAAAAGAAATTGAAGCTATGGTAACAAAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAAGAAACTG-AGTTA-AAAACAGAAATCATGGACATGAAATGCAGGAGCATGAGGGACAATTTACTTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAACTGTGTCACCAAGGTGCTTGACTTTATAGAAAAGGAGGTTAA-AATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCATGCTCACAGGATCGGAGCATT--CA---GTC-------AAGCTAAGACCCGTCCAACTGTAGCCAAATTCGCTTGGTCAGCAGATAAAGAAAACATAAAAAGGTCGGCT-AGAAACCTAAAGGGAACCACATATGGCATCAGCGAGCAGTACCCAAAAAAGATTATGGACATTCGCCGGAAACTCACGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACACGTATATCAGGATCGACAAACTATATATAGACAAGCAGTTGTACAGGGGAGAT---AACTAGGACAAATGTGAGAGTGAACTAAAGTGTTTAGCGTGGAATATTGAAGGGTTGACTATTGATAAAAGATCAAGCAAGGATTTTGTAAATTTAATTAATGATAATGATGTTATATGTTTT---AGCGAAACATGGACCAAC-AAAACTTCAGATATCGACTTCAAAGGGTAT--AGTAATCCTATTCATTCGTTTAGACGATTTTAGCACCGAAGGGCAAAATGCTCTAGCGGTGGTATCATTATTTATATAAAGGACTCGATGAGAA-----------AAG------GTATTAGCCTTATAAAGAATGAT-TATGATTGTTTAGTTTGGTTGCACTTTGATAGATTA-TTTTTTAATATTGATGAAGATATTTATTTG-GCAGTAACATATATAGCGCCAGAAAATTCTCCTGCTCATAACATGT-ATGATATAGATATTTTTAGAACAATT-GAACAAGATGTAAATTATTTCCAAGATAAGGGGAAAATAT-TTATTGT---AGGAGATATGAAT---AG--T-A-GAGT--AGCTT-TAAAAACCGA-TACATAGATAATGA-CA-G-------A-AACA---TTGAGCAATT---TGATTTTCTCAAAG--TAGAC--AATCCAATACCTCGTGCGACCTCAGAC-TTGGTA--TCAAACCGTTACGGTGAATATTTAATTGATCTGTGCAAATTA--ACGAATTTACGTATTGTTAATG-GC----AGGTTACATCGGG---ATAAA-GG-TTTAGGTAAAATTTCTTGCGTAACACATAATGGACAGAGCCTAGTTGACAACCT-GTTAACGGCCCACAATAACTTTGACACACTT-T--CAGATTTTTGTGTTCACAATTTTAACGA--ATTCTCC--AATCATGCCCCAATCAC-ATTTTCATTCGATATAACGCCTCAATATGAATCACGTG--ATACAAGAGAAT---------ACATTT----------ATTACAAGTGGAAACCCGAATTTAAAAACGATTTTATTAATGGCATT-----TCTCAAGGTATAAATGATTTAGCACAATCGCTATTAGATGGAATAGAT--AAGAACTGTAGTACTGATG----AACT-AGTAT-CGAGT-C-TCACTGACTTCATGGACA---AAAATGCAAATAAATATTTCA-GGCA--TACTGTTAAA-C-----------CTTCGGGTA--ATT--ATTTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTTAATGATGAATGTAAAACTCGCCAATC--ACT-----ATACAAGGAATA--TAT----------TTTAT-TG---TAT--A----ATATAAATAAATCGGA-----------TGCG--AA----CAGGCAA----TTGATGCTACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATC
gi|10 : aatatgtgttgaaacaATAAATAATTTAGAACAATCGCTGTTAAA-C-----------T-TCGGGTA--ATT--A-TTTTTTGT-CAA--ATC-AAAACAA------AAATAA---GTGGTTAAAGGATGAATGTAAAACTCGCCAA-TGAA-T-----ATACAAGGAATC--TAT----------TT--T------------------ATAAATAAAACGGA-----------T-----------------------------TACAATCGAAAAAGAATTATAAATATTATTGCAGAAAATGTAAATAT-GCGTACAATCg
gi|11 : GTTACATCGGG---AT-AATGG-TTTAGGTAAAATTTT-TGCGTAACACATAATGGACAGAGCCTAGTTGACTACCT-GTTAACGGCCCACAATAACGTTGACACACTT-T--CAGATTTTTTTGTTCACAATTTTAATGA--ATTCTCC--AATTACGCCCCAATCAC-ATTTTCATTCGATATAACGTCTCAATATGATTCAC--G-----CAAGAAAAT---------ACATTT----------ATTACGAGCGGAAACCCGAATTTAAAAACGATAGTATAAATGGTATT-----TCTCAAGGTATAAATAATTTAGAACAATCGCTGTTAagaacttaggatataaaatgaatgaaatgagacgtaagcgtccaaaagaattcttgaacacgtaaaaaacagagtatcagtgatatacaattggctaaattctat
gi|12 : TATTACCCAGATAGAGAGCGTGTGCCAAAATGAGCCGAGGAGCTTAAAGGGACCCA-GTATGGTATTGGAGAGCAATTCCGGAAGGAAATAGTCGACATCCGATGGAAGTTGGTACCGATCATGAAGAAGGCTAAGCAAGACGGGCACGAATCGTACATAAACATTGATAAACTCTACATTGATAACCATTTGCACAGAGGAAAGTTAAATTAGTTTTCATGTGAGAGTGa
gi|13 : AAGATAAGG---AGCTAT-TTA-TGTGACAGGGGACACCAATTCA----T-G-GGTT--GGC-CGTAAAAAA-GATTTTATTGTCAATGT-TT-GTATCC-TT-GACA---ATGATGACGTATATGACATT-----GA--CA-CCCCATT---ACACC-CGG-CTACATGTGAT-TT--TAGCTCAAATCGTTTTGATGATTGTTTACTT-ATTTTTGCAAGTCG--ACCAATATACGTATTATCAAttt
gi|14 : ttaGCCAGACATCCTATAATAATCTATTCACACAAGTGTCAAAAATTCAATTGATAAAAAATGACAAA-AACTGTATAATATGGTTAAAATTAGATCGAACATTTTTTTAAGATTCCTGATGATTATTAATTTTGTTGT-ACTTATGTAGTACCTGAAAATTACCCTGTTTATGCTA-GCAATGA-ATT-ATATc
gi|15 : aaCAAGTAAAC---------AAGTTT----------ATTACTAGTGTAAACCAGATTTTAAAAATGTTTCTGTAAATGGCATT-----TCTCAAGATGTCAATATATCAGAATTATCGCTATCAGATG--ATATATTCAATAACTGTAGAACTGAT-----AGCTCCGCATCCAA-TAC-TCACTGATTTTATTGAC----------------AATACTGAA-AATG--TACTGTTAAA-C-----------a
gi|16 : AGATAAGGGG--GCTAT-TTA-TGT---GACAGAGATCA-C-CAAT--TCACGGGTTCGGC-G-TAAAAAAT-ATTTTATTGACAATGATCGTAT--CC-TT-GACG---ACGATGAC-------GTAT-------A--TA-AC--ATT--GACACC-Cat
gi|17 : ttaagTGCCGATCATGAAACAGGCCAGACAGGAAGGAAAAGACGCGTTTATcattacatcgagctattatataatt
gi|18 : gtcggacaATAATATTT-ATGATATTGACATTTTTAGACAAATT-GAAAATGATATcagga
gi|19 : ATTGATAACCATTTGTACAGAGGAAATTTAA------ACTCATGTGATAGTGtaatatt
gi|2 : gtGATTTTACAAACATTATTGGAGATTATGATGTTAT-TTTTTTCTAAGTGAGACATGGACAGGCAAAAACTCTAAAT-TGGACTT-AATGGATTTAAAGTATTCC-----ATTCATATAGAAAATTTCAATATAAAAGAGCCAAACGTAAAAGTGGAGGTATT-TTAGC-ATGTCAGAAACTCTATAATAA-----------AAG------GAATTAAACTGATAAAAAATGATGTA-GACTGTATATTATGGTTAAAATTAGATCGAACATTTTTTCA-GATTCCCGATGATTATTATCTCTGTTGT-ACTTCTGTAGCACCTGAAAATTCCCCCGTCCATGCTAGGT-ATGATTTTGATATATTTCG-CAAATTAGAAATGGATATCGGATACTTTCAAAATAAGGGAAAGGTATATTTCTGT----GAAGATGTAAATGCAAGGAT-A-GGGA--G------AAAATCTGATTGTATTGAAAATGA-CG-GG--CCGTTAAATGGTCATGATAACTT---TGATATT-----GATTTATAT--ATTCTGA------GGGCAACCTCAGACAGTGGTA---CAAATAGTTT-GGTGAGCACTTGATAGATTTATGCAAATTACTACAA--ATGCGTATAGTTAATGAGCGTCTAGG----AACGGACGCAT-A-----TATAGGTCAATCTACATGTTTTACAAATAATGGAGAAAGTGTTGTCGATTATCTCGTCACTGATGCGTG-T-ATTTTCA-ATACTA-TAACGGACTTCAGT-TTCATGAT--------------TCA--AATCACGCGCCGATttta
gi|2 : actatcgcagcaacagaaatcaaattct---AAA--GCAAATAAATAT-----AATA---ATTGTGAAA-CGCGACATAAAAC-GCCAGTA--AATGCA-TATTTCAT--AA--ATA-AAAGTAATGTATTAAATAACAAATGGTTTGATCAAGAATGCAAA---CGAAAA-C--A-TGGGGTATACAAGGAGGCAGT-T----------TC--T-CG---T-TTGA----ATTTAAGTAGGACAGC-----------T--G--AAAA--TGAATACCTCCTC-ATGATA-AAT--AAAAAATACTATAAATATCATTGTAGAAttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagaaagcaaataaatataataattgtgaaacgcgacataaaacgccagtaaatgcatatttcataaataaaagtaatgtattaaataacaaatggtttgatcaagaatgcaaacgaaaacatggggtatacaaggaggcagtttctcgtttgaatttaagtaggacagctgaaaatgaatacctcctcatgataaataaaaaatactataaatatcattgtagaacagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|3 : actatcgcagcaacagaaatcaaattctgattttacaaacattattggagattatgatgttatttttttctaagtgagacatggacaggcaaaaactctaaattggacttaatggatttaaagtattccattcatatagaaaatttcaatataaaagagccaaacgtaaaagtggaggtattttagcatgtcagaaactctataataaaaggaattaaactgataaaaaatgatgtagactgtatattatggttaaaattagatcgaacattttttcagattcccgatgattattatctctgttgtacttctgtagcacctgaaaattcccccgtccatgctaggtatgattttgatatatttcgcaaattagaaatggatatcggatactttcaaaataagggaaaggtatatttctgtgaagatgtaaatgcaaggatagggagaaaatctgattgtattgaaaatgacgggccgttaaatggtcatgataactttgatattgatttatatattctgagggcaacctcagacagtggtacaaatagtttggtgagcacttgatagatttatgcaaattactacaaatgcgtatagttaatgagcgtctaggaacggacgcatatataggtcaatctacatgttttacaaataatggagaaagtgttgtcgattatctcgtcactgatgcgtgtattttcaatactataacggacttcagtttcatgattcaaatcacgcgccgatttacttcggattaaaaatattgtcattacctcgagctattgaaacccaaaaacgcgtatcgtataaatggaacacggaaacaaatatgatttcataaacgacataacggtaaatattgatattttgtgtaatgatttaaatgattgtaaaaacagccattgcgaccccgatgatatggttaaaatattcttggaatatcttacagagAAGAAAAGGAAAAAG---AAGGAATCGCCTGGGGAAACTAAAGTTGAACCTGAATCAAAAGTGAGAAAGGACAAGGAAAAAATGGCTACAAATAGCGCGAGTTCAACTCAACAACC-CATTTTCCCA-GTTATAAATAAT-GGGCATAGTGAGAACTTTGGACATCAACAAGCAAGTCAGTCATTCAATATATCACAGCCTATGACTCCAACGCACCCGCCACCAAGTTATAA-TT-ATAATCAAAATATGGCTATGAATTCAGCGTCTCTAAATTTTCATCAGTATACATCAACACCGACAAATAATTCGCTACTCAACAACGATATCATGTCTATGTTATTTCAAAGGATAGACTCCGTGGAT-AGAAAGCTGTTTACATTAGACACTATTCTGTCAAGCGTGAGCGCTATAACAGCGAGATTG--CATTATGGATCAGAA--GATCAACAACACGGAGAGAAA----AATGTAA-A------ACA---TTGAAAATAGTCATTCTTTTGATGCTAGCTTAAT--TGA-TAATGTTAGCAAAAAACAACAACAAAAAGAAGATTTGGT--TAAAA--GCA------TGAAAAAATATGAGCAATAACGACAGTGGGAGGA--T--AGTTATAAGTTGGATATTACGGACCTAAATTGTCACAGTATGCGCAACAATCTGATGTTTTACAAACTT-CCAGAAGAAAAAGGCAAAAACTGTGACACAAAAATCCTCAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGG-GAAAGCGGAATTCAAACTCCACCGCGCACACAAGATCGGTGCCTTTTCAAATGAA-------AAGATAAGACCCAT----C-GTTGCCAAATTCCCCTATTACCCTGACAGGGAGGGTGTGCGAAAATCAGCCAAGGAGCTTAAAGGGACCCA-GCATGGTATTGGAGATCAATTCCCGAAGGAAATAGTTGACATCCACTGGAAGTTAGTACAGATCATGAcagccaaaagaagatataacaggcaaaaggcgtcacaaatgaatgaaa
gi|4 : atataattgaaaattgtcatgttaCTATTCCAAATAGGAATAAACGGAAAAAATCCAAAGAATCTCCTC---AAAATA--GTCAGAC-TGT-TCAAAAATG-GAAA--ACAAC-----AATGGCTCGAAATGACGCGAATTTACCACAAATACCGCAG---CCTACACCACAAACTGTCGGACATGGAGCAAA---TGGACAACACCTGGCAAGTCAACC--T---TATATGACAACC-------CCAATGTATCTGTG--CCATTCGCCA-TTGATGA----------GC-ATGAATTCTCGGTCACC-------CAT-ATTACA-ATCAGCGCCG-CAAA--------------ACAATAATATTTTATCAGTAATAATGCAAAGGCTTTGTTCAATGGACCAGAAATCGGTCCA-ATTAGATACAATTCAGTCGACCATGTGCAATATAACGG-AGG---G--CATTA-G---CAAAATGGATCAACG---TGTAGTGAAATTAGAAAACAA-A--CTAAACGATCTGGAACATATTGCTTCATTTGAC---AACTCAATAATGAGCGAAATTATTAAAATGCAAAAGGAAATTGAAGCTATGGTAAC-AAAATGCAATCTTTTGAAAGA----GATCAA-AA----AGTCAAGAAA--CTGAGTTAAAAAACTGAAATCATGGACATGACATGCAGGAGCATGAGGGACAATTT-ACTTTTTTT-AACTTGAAAGAAGAAAGGGAAGAAAGCTATATCACAAAGGTGCTTGACTTTATAGAAAAGGT-GGTAACAATCAGT-AATGCTGCTA-CAGAAATAAAATTACAGCGTGCTCACAGGATAGGAGCATT--CA---ATC-------
gi|5 : -GAGATTGGACAATATGGATCAGAA--GATCAACAACATGGAGAGAAA----AATGCAGGA--C--A------TTGAAAATAGTCGTACTTTTGATGCTAGCATAAT--TGA-CAATGTGAGCAAAAAACAACAAGTA---GAAGATTTGGTGAAAAGCATGAAAAAATATGAACAA----GAACAACGACAG-AGG-GAGGAA-----AGTTATAAGTCGGATATTACAGACATAAAATGTCGCAGTATGCGCGACAACCTGATGTTTTATAAACTT-CCAGAAGAAAAAGGCGAAAACTGTGAAACGAAAATCCTAAAATTTATTGAACATGA-ATTGA-AGCTTGTAAATGC-GGAAGCGGAAATCAAACTCCACCGCGCGCACAAGATCGGTGCCTT--C-----TCTAATGAAAAGATAAGACCCAT----CT-TTGCCAAATACGCCTATTACCCAGATAGAGAGCGTGTTCAAAAATCAGCCAAGGAACTTGAAGGGACCCA-GTATGGTATTGGAGAGCAATTTCCGAAGGAAATAGTCGACATCCGCGGGAAGTTGGTACTGATCATGAAGAAGGCTAAGCAAGATGGGCACGAAGCATTCATAAACATTGATAAACTGTACATTGATAACCATTTGTACACAGGACATTTAAACTAGGACTCATGTGAGAGTGccgtcca
gi|6 : gcaatnnnnnnnnnntTACAACG-----AT-AA-GAATGTAGGTAAACTAACATGCATGACTTATAATGGAGTGAGTACAGTCGATTATCT-ATTGACTTCCTATGAAAATTTTGAT-CATTTGT--CCAACTTTGAAGTACTTGATTTTAATA---GTTTTTTTAAATCATGCACCAATAGC-ATATCC-TTTAACACAATGA--CAA----ATTTAC--AGTATACAA-AAAATACTACAAGAACGTTTTAGAGATGGGATGATAAACATAAATTAGATTTTTTAAACGATATCACGAACGATATTCAAACTCTCGA---ACAAAC-GTT---AACAACCG-----AGAT----T---TCCGTTGGCAGTAATGCTGATGTTTTGGTT-AATAT-----T-T-TTACTGAATTT-TTGACTGTAAGA--GGAAACTAGTATTTTA-AACA--AACT-TCAAA-A-----------C-TTAAACACCATT--A-TTTTATGTGCAAGGATG-AAAACAA------ACAAAA---ATGGTATAATAATGAATGTAAA------CAA-A--A-------AAAAAAGATATT--TATAAAAACGCAGTT--TACAAGTT-T--A----ATTTAAATAAAACTGAAAATAATAGATT--A--AA----TAT--------TT-ATGAAACAA---AACGAG-ATTATAAATATTGCTGTCGTAAG-GTAAAtt
gi|7 : ggacggttaTAATTTTGATACAGTA-A--TGGACGTCTGTGTTCCCGGTGTTAATGTCCATTCT----AATCACGCG------GCGATTTTC-TTCGGAATAaaataattttaatagagatcaaag
gi|9 : taagacaatgcgtcaaatatttcgacactaatgAGTTCAGATG----ATCT-TTTAT-CGA-A-CATTACTGCATTCATCGACT---TAAT-GCAAATCAATATTTCA-AGCA--TACTGTTAAACC-----------C-TCGGGTA--ATT--A--TTTTTGT-CAA--ATCTAAAAAAA------AAATAA---GTCGTTTAATAATTAATATAAAA-TCG---A-C--A-T-----AT---AAGAATC--TAT----------T---T-CA---T-T--ATATGATATAAATCGAACGGA-----------T--GCCAACAGGCAG--------TTGATATTACAATAGAACAGGAATTATAAATATTATTGTCGAAAATAGAAA-ATCGCTTACAATCgaaatattgtaatgaactctaccttataaaacccgagaacacatatctggcacgtgaaaaaataaacttgcttccataaacgaaataacggtaatattgatattgttgtgaagattttaataattgtaagaacagcaattgcgacctcgacgatatgtttaacaatatgaatatcttccagagaaaggtaatagatgtgaaacgcgacataaaatgccagtacaagcacattccataaacaaatgtaatgtattgaataacaaataatattatattatcacgaatgcaaatgaaatcttaatatatacaggcagtaagtgtgtggttttaatttaagtaggactgctgaacataaaccacatcatgataaattaaaagattatgaatagcattgcagaatacttaaaagtagatataacagatgagtaacaaatgaatgcaataaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAATAACAATCCGTTAGACCGTGATTGCAAACGAAAACTTGTGGTTTATAAGGAGGCAATTTCTCGTTTTATTATTTATAGAACTGTTGCAAACAAACACCTGCTCATGACCAATAAGATATATAATTATTATCATTGTTCAACAGCTTAAAGAAAAATGACATAGCAAATTACTAAATGAAACAACAAACTAGAGAATTTTAGATACTGTATAGACACAATTAAACATCCCAACTAAATGATAATGTAAGCATGGCTGGTTTATAAAAAATAATTCCAAAAATTGTTTGAGCTCAAAATTGGAGAAGGTATAAAAATATTGCGTAATTTTGAAATTGTGGAGTTGCGTTTTATGAACTTGATTTACCATTTACATTAGAAGAA
Unaligned ( gi|20 ): AAGATAAGGGGACAGGGGACACCAATTCACGGGTTGGCCGTACAA