lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 555555 11 22 222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22222222 444444444 1111 33333333333333333333 111111 11 4444444444444 55555555555 11 2222222222222 11111111111 11 111 1111111 1 2
lowQualScore : 222222 55 99 00 2 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 1 77777777 6 999999999 4444 55555555555555555555 444444 99 3 77 5 4 0000000000000 11111111111 33 88 6 2 7777777777777 2 2 00000000000 33 22 2 666 22 1 333 7777777 444444 1 1 1 1 66666666 7777777777777777 3333 7 3 1 4
lowQualScore : ...... .. .. .. . ... ........................................................................................................................... . . ........ . ......... .... .................... ...... .. . .. . . ............. ........... .. .. . . ............. . . ........... .. .. . ... .. . ... ....... ...... . . . . ........ ................ .... . . . .
lowQualScore : 777777 77 22 00 2 555 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 22222222 0 555555555 2222 33333333333333333333 333333 22 0 22 9 4 8888888888888 88888888888 55 66 2 6 4444444444444 5 2 00000000000 66 88 0 888 55 9 333 8888888 888888 7 7 7 7 00000000 9999999999999999 5555 2 3 7 3
consensus : TACATATACACCGT--GGACCCGGGCTATCATCGATCCCCTCGCCGGAAGTCCCC-------------CAAGC---------T------------------AA-------------A--------AAT-----ANT---------AAAAC---------ATAA----------ATATCATCCATA-TTACAA----GTTTCTCTCTATCTTAATTTGATTTAA---T---C-TT----TCTTT------------TA------TATACATAT----T-TGT--TTGTTCAGTTACAATAAAGNTT-TCTGTTA---T---AT----CTCTAAATGTACCGCC--TATGTTACAC--TGTAAATAGT-AC--------GCTACTTTGGAG-AAGAACTCT-ATAA-----------GAATTGTAT--T-CTT--T--CGT-TC---T--NA--TCCT------TTAT-AT-TTTGAA-TATT-G--------TA---------C------TTGTT----TATCTGTAAATAC-TGGAAAT-AAAATATGTTTAAAC
Reference ( gi|4 ) : TACATATACACCTT--A-ACCCGGGCTATCACTGATATCCTCACAAAAAGTCCCC-------------CAAG----------T------------------AA-------------A--------AAT-----AGT---------AAAAT---------ATAA----------ATATAATCCATA-TTACAA----CTTTCTCTCTATCTCAATTTGATTTAA---T---C-TT----TCTTT------------TA------TATACATAT----T-TGT--TTGTTTAGTTACAATACAGATT-TCTGTTA---T---AC----CTCTAAATGTCCCACC--CAAGTTTTAC--TGTAGATAGT-GT--------GCTACTTTGGAG-AAGAACTCT-ATAA-----------GAATTGCGT--T-CTA--T--CGT-TC---T--TG--CCCT------TTAT-AT-TTTGAA-TATT-G--------TA---------C------TTGTT----TATCTGCAAAAAC-TGGAAATAAAAATATGTTTAAAC
gi|3 : TACATATACACCGT--GGATCCAGGCTAACACAGACCAACTCGCCGAGAGTCCCC-------------CAAACTTATTTATTT------------------AA-------------AGAGAATCAAAT-----AGT---------AACAC---------ATAA----------ATACCATCCATA-TTTCCA----GTT-CTCTCTATCTTAATTTGATTTAA---T---C-TTCTTTTCTTT------------TACATGTATATACATAT----T-TGG--TTGTTCAGTTACAATGCCGTTT-TCTGTTA---TCGTGT----CTCTAAATGTTCCGCT--TT-GTTTCAC--TGTAAATATT-AA--------GCTACTTTATAG-AAGAACTCT-ATAA-----------GATTTGTAC--T-ATT--T--CGT-TC---T--AA--TCAT------TTGT-AT-GTTGAA-TATT-G--------CA---------C------TTATT----TAGCTGT--AAAC-TG--------AATCTGTATAAAC
gi|1 : tatactctctccctatgtacattatctttaattttacttggaaacgctttgcttccccatgaaaacaaaaatgtgcaaaaagttattatggctagcaatcatttctaagaaatatttcgtttatttttgacatacgtctaaaagcagatacaTACATATACACCATGGA-ACC--GGCTGTCAACGATCTCCTCGC--CAAGTCCCC-------------TAAGC---------T------------------AATTTTGGTTTATTTA--------AGT-----ACTCTTTTTAAAAAAATAAA------ATAATGAACAATAAATATCACCCATA-TTACAA----GTTTTTCTCTATCCTAATTCGATTTGA---TCTCC-TT----TCTTTATATATATTATATA------TATATATAT----T-TGT--TTGTTCAGTTACATCAAAGTTT-TCTGTTATCGT---AT----CTCTAAATG---CACCGTTATGTTACAC--TGTAAACATC-AT--------GCTACTTTGGAACAAGAACTCT-ATTC-----------GAATTGTAT--T-ATT--T--TAT-TC---T--TA--CCGT------TTAT-AT-TTTGAA-TTCT-G--------TA---------C------TTGTT----TGTCTGTTAATAC-TGAAAAT-AAAATATGTTTAAGCc
gi|2 : agacagacgaggggaactttttaaatatatctctccccctaggcacattatcttataatatgatttaacacggaaacgctttgctttcttatgaaacagatatcaataattttgaagctgaacatagtttattgtggcttgcaatcgttcctaagtcatgtttgctcaaatttccccatactcattaaaacagatacacaTACATATACACCGT--GGACCTGGAATATCATTAATCCCCTCGCCAGAAGTCCCCAACCTTCTTTAAACAAG----------TTCTTTTTTTTTTTTTTAAAA-------------A--------AATAAAAAAGT---------AAAAC---------ATTA----------ATATCATCCATA-TTACAAATTCCTTCCTCTCTATATTAATGTTATATAAAATT---CTTT----TCTTT------------TA------TGTACATAT----T-TGT--ATTTTTAGTTACAATTAAGTTT-TCTGTCA---TAGCAT----CTCTAAATGTTCCG-C--TATGTTACAC--TATAACTATT-TC--------ACTGTTTTGGAG-AAGACCTCA-ATAA-----------GAATTGTA---A-CTATTT--CAT-TC---T--AG--TTCG------TTAT-AT-TTGTAA-TACT-G--------TA---------C------TTTCT----TATTCGTAAATGC-TGGAAAT-AAAATATGTGTAA
gi|5 : gacagacgtgaagaagtttttaataccatcctcaacgcacagtaaactttttacatagtaacgctttgtttccccatgacacaaatatcactatttttgaagctgtgtaaaacatatcatggctagcaatcatttctaagtagtcaataatttcctcatacgtcttaagcagatacaCATCGATCCCCTCAACAGAAGTCCCC-------------CAA---------------------------------------------A--------GAT-----ATT---------TAAGTTTTCCTTTTATAA----------A----ATCAAAAGTTCCAG----C-----------CTTAATTTAATCTAA---T-----TT----TCTTT------------TA------TATATATCT----C-TGT--TTGTTTAGTTATAATAAAGGTT-TCTGTTT---T---CT----CTCTAAA-GTATCGCC---ATGGTAAAC--TGTAAATAGT-ATTTATAAAAGCTACTATGGAG-AAGAACTCT-ACGA-----------GAATTGTTT--T-CTT--T--TGT-TC---T--TA--TCCT------TTAT-AT-TTTCAA-TATT-G--------TA---------C------TTGCT----TATCGGTAAATTC-TGGTAAT-AAAATGTGTT
gi|6 : -------------A--------AAT-----TCT---------AAAAC---------ATAA----------ATATTATCCACA-TTACAA----GTTTCTCTCTATCTTAGTTTGGTTAAACT-T---CTTT----TCTTT------------TA------TTTACATATGTGCT-TATTCTTGTTCAGTTACAATAAAGATT-TTT-TTATCGT---AT----CTCTACATGTACCG-C--TATGTTATAC--CGTACACATT-AT--------TCTGATTTGGAG-AAGAACTTT-ACAA-----------GAATTAAAT--T-TTC--T---GT-TCCAAT--TG-----T------TTAT---------A-TATT-G--------TA---------C------TTTTT----TATCTGaga
gi|16 : cATTTGATTTAA---TATCT-TT----TCTTT------------TA------TATACATAT----TGCAT--TT-TGTAGTTACAGTAAAGGTA-TCCG----------AT----CTCTAAATGTACCG-C--TATATTACAC--GGTAAATAGT-AA--------GCTACTTTGGAA-AAGAACTCataatact
gi|9 : tgTATTCAATTACAACA-ACATTGTCTGTTA---T----CGTTTTTCTAAATGAACCGCC---ATGTTACAC--TGCATAT--T-GT--------GCTTTTTCGGAG-AAGAACCTT-ATAATAAAATTATAAGAATTATAC--T-TTT--C--CGT-TC---TAATA--CTTT------TT-C-AT-TTTTTA-TATT-G--------TA---------C------TTGTT----TATCTGAAAATAA-TGAAAAT-AAAATATGTTTAAAC
gi|11 : TTACAAT---GTTT-ACTGTGA---C---GC----TTATCACTGTACTAC------GTTT--C--TCCAGATA----C--------GC-ACTT-GGAG-AAAAACTCT-GTAA----------------------T-CTT--T--CGT-TC---T--AGATCCAT------TT-T-AT-TGTGAA-TAAT-T--------TA---------CATGATTTTTTT----TATCTATAAAAAC-TGGAAATTAAAATATGTTTAAAC
gi|10 : ATT-TCTAACA---T---AT----TTCTAAATGT---ACT--TCATTATTACACTGCAAATGGT-AA--------GTTATTTTGGGA-TAAAATTCT-ATAA-----------TA--CGCGTATT-CTT--T--CCT-TC---A--AG--TTTT------ATAT-AT-CGTAAA-CATT-G--------TA---------C------ACGTC----TCTCTGTAAACAC-GGAAAATA-AAATAAGGTTAAAC
gi|22 : agttacccgtctatttctTCTAAATGTACT-TC--TATGTTACAT--GGTAAA-AGTTAT--------ACTACTTTG----AAGAACTTT-ATAA-----------TAGTTGTAT--TCCTA--T--a
gi|12 : catTTACA-TATAAA-AGT--T--------G--ACTTTGGAG-AAGAACTCT-ATAA-----------AAATTGTAT--T-CTT--T--CAT-TC---T--AA--TTCT------TTAT-AT-TTTGAA-TATT-GTACATGTTTA---------C------TTGTT----TTTCTGTAAAAAC-TGGAAATAAA---ATGTTTAAACtttttcc
gi|13 : aatggcagtgttaatataataTACTTTGGAG-AAAAACTTTAATAA-----------AAATTGTAT--T-CTT--T--TCT-TC---T--CG--TCCT------TTAT-A--TATGAA-TATT-C--------TA---------C------TTGTT----TATCTGTAAATAC-TGGAAAT-AAAATATGTT
gi|8 : agcactatgttacactgtacatattacatgtatgctacatgactgTAGTTTTGAG-AAGAACTCT-GTAA-----------GAATTGTAT--T-CTT--G--CAT-TC---T--AA--TCCT------TTAC-AT-TTTGTA-TACT-G--------TA---------C------TTGTT----TATCTGATTATAC-TGAAAAT-AAAATATGTTTa
gi|15 : aagctcacttgtttcattttcagtattagtgattatattagttgcagttaattatattttctttaagaaagaagcaattattggttatgatttctacaatcaaTATTTTG-AG-AAGATCCCT-ATAA-----------GAAT-G-GT--A-CTA--T--TTTATC---T--AA--TCCT------TTGT-ATGTTTAAAATTTT-A--------TAAAACATTATT------TTGTT----TATCTGTAAATAA-TAAAAAT-AAAATGTGTTTAAA
gi|17 : aaaatatcaTTGGGAG-AACAACTCT-ACAA-----------GAATGATAT--T-TT---T--CAT-GC---T--AA--TCTT------TTAT-AC-TTTGAA-TGTT-G--------TA---------C------TCGTTCTGGCATACGTAAACACGCGGGGGGGGGGATACGTTTAAAC
gi|18 : ctcacattacatgTGGAG-AAGAACTCA-ATAG-----------GAATCGTAT--T-ATT--T--CGT-CT---T--AA--TCCT------TTTT-AT-TTCGAA-TA------------TA------------------GTT----TATCTGTAAATAC-TGGAAAT-AAAATATGTTTAAc
gi|7 : aAGAACTCT-ATGA-----------GAATTGTAT--T-TTT--TTTCGT-TC---A--TA--TCCT------TTAT-AT-TTTGAA-CATT-G--------TA---------T------TTGTT----AATCTGTAAAAAC-TGGAAAT-AAAATATGTTTAA
gi|20 : ttgtatgaatattgttgtgttatatggttgctttatcaactaccaatcgcctgtttaaaactttgattgtaataaacagtgcatgtgttagttatcttaatgcacgtgctaaaaatAACTCT-ATAA-----------GACGTGTAT--T-ATT--T--CAT-TC---T--TA--CACT------TTGT-AT-TTTAAA-TATT-G--------TA---------C------TTATT----TATCTGTGAATAC-TGGAAAT-ACAACATGTTTA
gi|21 : -ATAA-----------GGATCATAT--T-CTT--C--CGT-TC---T--AA--TCCT------TTAC-AT-TTTGTA-AACT-G--------TA---------C------GTGTT----TATCTGAAAATAC-TGAAAAT-TAAATATGTGTAAc
gi|19 : A-----------GAATTGAAT--T-CTT--T--TGC-TC---C--TA--TCCTGAGACTCTAT-GT-TGTGAA-TATT-G--------TA---------TA-----TGGTT----TGTTT-TAAATAT-TGGAAAT-AAAATAGGTTTAA
gi|24 : TTGTAT--T-CTT--T--TGT-TC---T--TA--TCCT------TTAT-GT-TTTG----ATT-G--------TA---------T------GCACC----TTTCTGTAAATAC-TGGAAATAGAttaa
gi|23 : --T--CAT-TC---T--AA--TCCT------TTCC-AT-TGGTAA-TAGT-G--------TA---------C------ATGTC----TTTCTGTAAGTAC-TGGAAAT-GTAATGTTTTTAAAtcatgttg
gi|14 : attatt--CGT-TG---T--AA--TCCT------TTATTAT-TTTGAA-TATT-G--------TA---------C------TTTTT----TGTCTGTAAATAT-TGGAAATAAG---ATGTTTAAAC
gi|27 : actttaaataaatacaagcatatataacggtgctaataagaattaagaaaccatacagcgtattgctagcgtttgttta--CCTT------TTAT-GT-TTTGCA-TATTTG--------TA---------C------TTGTT----AATCTGTAAA----T-------AAAATATGTTT
gi|26 : atCCT------TCAT-GA-TTTGAA-C--T-G--------TA---------C------TTGTT----TATCTGTAAATAC-TGGAAATTAA---ATGTTTTAAca
gi|25 : tT------TTAT-AT-TTTGAA-TGGT-G--------TA---------C------TTGTT----TATCTGTAAATAC-TGGAAATGAAATAATTTTTAA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|28 ): CTTTTCTGTAAATACTGGAAATAAAACATGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 1111 333333333 1111 222222222222 111111 1111 111111 22222222222 2222222222222222222222222222222 11111111111
lowQualScore : 0 2 0 6 33 1 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 99 111 4444 4 6 999999999 2222 999999999999 666666 2222 222222 1 1 88888888888 9999 0 9999999999999999999999999999999 2 00000000000 2 1 4 44 22 444444 1 3 1 1 1 55555555 7777777777777777 3333 22 1 1 1 1
lowQualScore : . . . . .. . .. ............................................................................................. .. ... .... . . ......... .... ............ ...... .... ...... . . ........... .... . ............................... . ........... . . . .. .. ...... . . . . . ........ ................ .... .. . . . .
lowQualScore : 2 5 2 5 66 4 00 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22 777 2222 2 7 777777777 1111 333333333333 444444 1111 333333 0 0 77777777777 3333 8 6666666666666666666666666666666 4 00000000000 1 8 4 33 77 666666 6 2 6 6 6 88888888 2222222222222222 3333 11 6 6 6 6
consensus : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAGCT--TTT-TTT--------AA-------------AAAT-----ANT-------AAAACATA---------------AATAT--CATCCATA---TTACAAG----TTTCTCTCTA-TCTTAATTTGATTTAA---T---C-TT----TCTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GC----------TACTTTGGAG-AAGAACT-----------CT-ATAAGAATTGT-ATTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
Reference ( family-1224 ) : TACATATACACCGTGGACCCGGGCTATCATCGATCCCCTCGCCGGAAGTCCCC-------------CAAGCT-----------------AA-------------AAAT-----ANT-------AAAACATA---------------AATAT--CATCCATA---TTACAAG----TTTCTCTCTA-TCTTAATTTGATTTAA---T---C-TT----TCTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAC--------GC----------TACTTTGGAG-AAGAACT-----------CT-ATAAGAATTGT-ATTCTTT--CGTTCTN-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
gi|1 : TACATATACACCATGGAACC-GGCTGTCAACGATCTCCTCGCC--AAGTCCCC-------------TAAGCT-----------------AATTTTGGTTTATTTAAGT-----ACTCTTTTTAAAAAAATAAAATAATGAACAATAAATAT--CACCCATA---TTACAAG----TTTTTCTCTA-TCCTAATTCGATTTGA---TCTCC-TT----TCTTTATATATATTATATA------TATATATAT----TTG---T--TTGTTCAGTTACATCAAAGTTTTCTGTTATCGT---A---TCTCTAAATGCACCG-TTATGTTACACTGTAAACA------T-CAT--------GC----------TACTTTGGAACAAGAACT-----------CT-ATTCGAATTGT-ATTATTT--TATTCTT-ACCGT------TT-AT-AT-TTTGAA-TTCT-G--------TA---------C------TTGTTT----GTCTGTTAATACT--GAAAA-T-AAAAT-ATGT-TTAAGC
gi|10 : agacagacgaggggaactttttaaatatatctctccccctaggcacattatcttataatatgatttaacacggaaacgctttgctttcttatgaaacagatatcaataattttgaagctgaacatagtttattgtggcttgcaatcgttcctaagtcatgtttgctcaaatttccccatactcattaaaacagatacacaTTTCTAACA---T---A---TTTCTAAATGTACTTCAT-TATTACACTGCAAATG------G-TAA--------GT----------TATTTTGGGA-TAAAATT-----------CT-ATAATACGCGT-ATTCTTT--CCTTCAA-GTTTT------AT-AT-AT-CGTAAA-CATT-G--------TA---------C------ACGTCT----CTCTGTAAACACG--GAAAA-T-AAAAT-AAGG-TTAAAC
gi|11 : agttacccgtctatttctaTTACAAT---GTTTACTGTGA---C---G---CTTATCACTGTAC----TACGTTTC--TCCAGATA----------C--------GC-----------ACTT-GGAG-AAAAACT-----------CT-GTAA----------TCTTT--CGTTCTAGATCCA------TT-TT-AT-TGTGAA-TAAT-T--------TA---------CATGATTTTTTTT----ATCTATAAAAACT--GGAAATT-AAAAT-ATGT-TTAAACa
gi|12 : ATATTACA-TATAAA-A------G-T-T--------G------------ACTTTGGAG-AAGAACT-----------CT-ATAAAAATTGT-ATTCTTT--CATTCTA-ATTCT------TT-AT-AT-TTTGAA-TATT-GTACATGTTTA---------C------TTGTTT----TTCTGTAAAAACT--GGAAA-T-AAA---ATGT-TTAAAC
gi|13 : aatggcagtgttaatataCTATGTTACACTGTACATATTACATG-TAT--------GCTACATGACTGTACTTTGGAG-AAAAACT-----------TTAATAAAAATTGT-ATTCTTT--TCTTCTC-GTCCT------TT-AT-A--TATGAA-TATT-C--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-
gi|14 : agcaTTGTTTA-CGTTGTA-ATCCT------TT-ATTAT-TTTGAA-TATT-G--------TA---------C------TTTTTT----GTCTGTAAATATT--GGAAA-T-AAG---ATGT-TTAAACa
gi|15 : actttaaataaatacaagcatatataacggtgctaataagaattaagaaaccatacagcgtattgctagcgt----------TATTTTG-AG-AAGATCC-----------CT-ATAAGAATGGT-ACTATTT--TAT-CTA-ATCCT------TT-GT-ATGTTTAAAATTTT-A--------TAAAACATTATT------TTGTTT----ATCTGTAAATAAT--AAAAA-T-AAAAT-GTGT-TTAAA
gi|16 : aaaatatcaTGATTTGATTTAA---TATCT-TT----TCTTT------------TA------TATACATAT----T-GCATT--TTGT--AGTTACAGTAAAGGTATCCG----------A---TCTCTAAATGTACCGC-TATATTACACGGTAAATA------G-TAA--------GC----------TACTTTGGAA-AAGAACT-----------C
gi|17 : TTGGGAG-AACAACT-----------CT-ACAAGAATGAT-ATT-TTT--CATGCTA-ATCTT------TT-AT-AC-TTTGAA-TGTT-G--------TA---------C------TCGTTCTGGCATACGTAAACACGCGGGGGG-G-GGGAT-ACGT-TTAAAC
gi|18 : ctcacattacatgTGGAG-AAGAACT-----------CA-ATAGGAATCGT-ATTATTT--CGTCTTA-ATCCT------TT-TT-AT-TTCGAA-TA------------TA------------------GTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAc
gi|19 : aAGAATTGA-ATTCTTT--TGCTCCT-ATCCTGAGACTCT-AT-GT-TGTGAA-TATT-G--------TA---------TA-----TGGTTT----GTTT-TAAATATT--GGAAA-T-AAAAT-AGGT-TTAA
gi|2 : TACATATACACCGTGGACCTGGAATATCATTAATCCCCTCGCCAGAAGTCCCCAACCTTCTTTAAACAAGTTCTTTTTTTTTTTTTTAAAA-------------AAATAAAAAAGT-------AAAACATT---------------AATAT--CATCCATA---TTACAAATTCCTTCCTCTCTA-TATTAATGTTATATAAAATT---CTTT----TCTTT------------TA------TGTACATAT----TTG---T--ATTTTTAGTTACAATTAAGTTTTCTGTCA---TAGCA---TCTCTAAATGTTCCG-CTATGTTACACTATAACTA------T-TTC--------AC----------TGTTTTGGAG-AAGACCT-----------CA-ATAAGAATTGTAACTATTT--CATTCTA-GTTCG------TT-AT-AT-TTGTAA-TACT-G--------TA---------C------TTTCTT----ATTCGTAAATGCT--GGAAA-T-AAAAT-ATGT-GTAAttaa
gi|20 : gacagacgtgaagaagtttttaataccatcctcaacgcacagtaaactttttacatagtaacgctttgtttccccatgacacaaatatcactatttttgaagctgtgtaaaacatatcatggctagcaatcatttctaagtagtcaataatttcctcatacgtcttaagcagatacaAACT-----------CT-ATAAGACGTGT-ATTATTT--CATTCTT-ACACT------TT-GT-AT-TTTAAA-TATT-G--------TA---------C------TTATTT----ATCTGTGAATACT--GGAAA-T-ACAAC-ATGT-TTA
gi|21 : -ATAAGGATCAT-ATTCTTC--CGTTCTA-ATCCT------TT-AC-AT-TTTGTA-AACT-G--------TA---------C------GTGTTT----ATCTGAAAATACT--GAAAA-T-TAAAT-ATGT-GTAAc
gi|22 : TCTAAATGTACT-TCTATGTTACATGGTAAA-A------GTTAT--------AC----------TACTTT---G-AAGAACT-----------TT-ATAATAGTTGT-ATTCCT
gi|23 : cat-ATTATTT--CATTCTA-ATCCT------TT-CC-AT-TGGTAA-TAGT-G--------TA---------C------ATGTCT----TTCTGTAAGTACT--GGAAA-T-GTAAT-GTTT-TTAAAattttttcc
gi|24 : TTGT-ATTCTTT--TGTTCTT-ATCCT------TT-AT-GT-TTTG----ATT-G--------TA---------T------GCACCT----TTCTGTAAATACT--GGAAA-T-AGATC-ATGT-
gi|25 : T------TT-AT-AT-TTTGAA-TGGT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-GAAATAATTT-TTAAg
gi|26 : atTCCT------TC-AT-GA-TTTGAA-C--T-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-TAAAT-GT-T-TTAA
gi|27 : -ATCCT------TTTAT-GT-TTTGCA-TATTTG--------TA---------C------TTGTTA----ATCTGT-----------AAA-T-AAAAT-ATGT-TT
gi|28 : TTT-----TCTGTAAATACT--GGAAA-T-AAAAC-ATGTCTTAAca
gi|3 : cTACATATACACCGTGGATCCAGGCTAACACAGACCAACTCGCCGAGAGTCCCC-------------CAAACTTATTTATTTAAAGAG--AATC-----------AAAT-----AGT-------AACACATA---------------AATAC--CATCCATA---TTTCCAG----TT-CTCTCTA-TCTTAATTTGATTTAA---T---C-TTCTTTTCTTT------------TACATGTATATACATAT----TTG---G--TTGTTCAGTTACAATGCCGTTTTCTGTTA---TCGTG---TCTCTAAATGTTCCGCTT-TGTTTCACTGTAAATA------T-TAA--------GC----------TACTTTATAG-AAGAACT-----------CT-ATAAGATTTGT-ACTATTT--CGTTCTA-ATCAT------TT-GT-AT-GTTGAA-TATT-G--------CA---------C------TTATTT----AGCTGTAA--ACT--G---------AAT-CTGT-ATAAAC
gi|4 : tatactctctccctatgtacattatctttaattttacttggaaacgctttgcttccccatgaaaacaaaaatgtgcaaaaagttattatggctagcaatcatttctaagaaatatttcgtttatttttgacatacgtctaaaagcagatacaTACATATACACCTTA-ACCCGGGCTATCACTGATATCCTCACAAAAAGTCCCC-------------CAAG-T-----------------AA-------------AAAT-----AGT-------AAAATATA---------------AATAT--AATCCATA---TTACAAC----TTTCTCTCTA-TCTCAATTTGATTTAA---T---C-TT----TCTTT------------TA------TATACATAT----TTG---T--TTGTTTAGTTACAATACAGATTTCTGTTA---T---A---CCTCTAAATGTCCCACCCAAGTTTTACTGTAGATA------G-TGT--------GC----------TACTTTGGAG-AAGAACT-----------CT-ATAAGAATTGC-GTTCTAT--CGTTCTT-GCCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGCAAAAACT--GGAAA-TAAAAAT-ATGT-TTAAACc
gi|5 : CATCGATCCCCTCAACAGAAGTCCCC-------------CAA-----------------------------------AGAT-----ATT-------------TA---------------AGTTTTCCTTTTATAAAATCAAAAG----TTCC-----AGCCTTAATTTAATCTAA---T-----TT----TCTTT------------TA------TATATATCT----CTG---T--TTGTTTAGTTATAATAAAGGTTTCTGTTT---T---C---TCTCTAAA-GTATCGCC-ATGGTAAACTGTAAATA------G-TATTTATAAAAGC----------TACTATGGAG-AAGAACT-----------CT-ACGAGAATTGT-TTTCTTT--TGTTCTT-ATCCT------TT-AT-AT-TTTCAA-TATT-G--------TA---------C------TTGCTT----ATCGGTAAATTCT--GGTAA-T-AAAAT-GTGT-
gi|6 : -------------AAAT-----TCT-------AAAACATA---------------AATAT--TATCCACA---TTACAAG----TTTCTCTCTA-TCTTAGTTTGGTTAAACT-T---CTTT----TCTTT------------TA------TTTACATATGTGCTTA---TTCTTGTTCAGTTACAATAAAGATTTTT-TTATCGT---A---TCTCTACATGTACCG-CTATGTTATACCGTACACA------T-TAT--------TC----------TGATTTGGAG-AAGAACT-----------TT-ACAAGAATTAA-ATT-TTC--TGTTCCA-ATTGT------TT-AT---------A-TATT-G--------TA---------C------TTTTTT----ATCTGATAATACT--aga
gi|7 : cAGAACT-----------CT-ATGAGAATTGT-ATTTTTTTTCGTTCAT-ATCCT------TT-AT-AT-TTTGAA-CATT-G--------TA---------T------TTGTTA----ATCTGTAAAAACT--GGAAA-T-AAAAT-ATGT-TTAA
gi|8 : ttgtatgaatattgttgtgttatatggttgctttatcaactaccaatcgcctgtttaaaactttgattgtaataaacagtgcatgtgttagttatcttaatgcacgtgctaaaaat----------TAGTTTTGAG-AAGAACT-----------CT-GTAAGAATTGT-ATTCTTG--CATTCTA-ATCCT------TT-AC-AT-TTTGTA-TACT-G--------TA---------C------TTGTTT----ATCTGATTATACT--GAAAA-T-AAAAT-ATGT-TT
gi|9 : aagctcacttgtttcattttcagtattagtgattatattagttgcagttaattatattttctttaagaaagaagcaattattggttatgatttctacaatcaaTATTCAATTACAACAACATTGTCTGTTA---T---CGTTTTTCTAAATGAACCGCC-ATGTTACACTGCATATT------G-T----------GC----------TTTTTCGGAG-AAGAACCTTATAATAAAATT-ATAAGAATTAT-ACTTTTC--CGTTCTA-ATACT------TT-TTCAT-TTTTTA-TATT-G--------TA---------C------TTGTTT----ATCTGAAAATAAT--GAAAA-T-AAAAT-ATGT-TTAAAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 666666666666666666666666666666666666666666666666666666666666666666666666 111111 22222222 111 1111 222222222222222222 222222222222 111111 1111 111111 22222222222 2222222222222222222 1111111111 11111111111
lowQualScore : 0 2 0 6 22 1 6 999999999999999999999999999999999999999999999999999999999999999999999999 777777 44444444 99 111 4 4444 6 888888888888888888 5 999999999999 666666 2222 222222 1 1 88888888888 8888 0 0 0000000000000000000 0000000000 2 00000000000 2 1 4 44 22 444444 1 3 1 1 1 55555555 7777777777777777 3333 22 1 1 1 1
lowQualScore : . . . . .. . . ........................................................................ ...... ........ .. ... . .... . .................. . ............ ...... .... ...... . . ........... .... . . ................... .......... . ........... . . . .. .. ...... . . . . . ........ ................ .... .. . . . .
lowQualScore : 2 5 2 5 88 4 4 666666666666666666666666666666666666666666666666666666666666666666666666 777777 22222222 22 777 2 2222 7 111111111111111111 7 333333333333 444444 1111 333333 0 0 77777777777 7777 8 8 8888888888888888888 9999999999 4 00000000000 1 7 4 33 11 666666 6 2 6 6 6 88888888 2222222222222222 3333 11 6 6 6 6
consensus : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
Reference ( family-1224 ) : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
gi|1 : TACATATACACCATGGAACCGG-CTGTCAACGATCTCCTCGCCA--AGTCCCC-------------TAAG--CTAATTTTGGTTTATTTAAGTACTC--TT-TTT---------AAA--------AA-AA-----TAAAATAATGAACAATAAATAT--CACCCATA---TTACAAGTTTTT----CTCTA-TCCTAATTCGATTTGA---T---C-TCCTT----T-CTTTATATATATTATATA------TATATATAT----TTG---T--TTGTTCAGTTACATCAAAGTTTTCTGTTA---TCGTA---TCTCTAAATGCACCGT-TATGTTACACTGTAAACA------T-CAT--------GCTAC----------TTTGGAACAAGAACT-----------CT-ATTCGAATTGTA-TTATTT--TATTCTT-ACCGT------TT-AT-AT-TTTGAA-TTCT-G--------TA---------C------TTGTTT----GTCTGTTAATACT--GAAAA-T-AAAAT-ATGT-TTAAGC
gi|10 : agacagacgaggggaactttttaaatatatctctccccctaggcacattatcttataatatgatttaacacggaaacgctttgctttcttatgaaacagatatcaataattttgaagctgaacatagtttattgtggcttgcaatcgttcctaagtcatgtttgctcaaatttccccatactcattaaaacagatacacaTTTCTAACA---T---A---TTTCTAAATGTACTTCAT-TATTACACTGCAAATG------G-TAA--------GTTAT----------TTTGGGA-TAAAATT-----------CT-ATAATACGCGTA-TTCTTT--CCTTCAA-GTTTT------AT-AT-AT-CGTAAA-CATT-G--------TA---------C------ACGTCT----CTCTGTAAACACG--GAAAA-T-AAAAT-AAGG-TTAAAC
gi|11 : agttacccgtctatttctaTTACAAT---GTTTACTGTGA---C---G---CTTATCACTGTAC----TACGTTTC--TCCAGATA----------C--------GC-AC----------TT-GGAG-AAAAACT-----------CT-GTAA----------TCTTT--CGTTCTAGATCCA------TT-TT-AT-TGTGAA-TAAT-T--------TA---------CATGATTTTTTTT----ATCTATAAAAACT--GGAAATT-AAAAT-ATGT-TTAAACa
gi|12 : ATATTACA-TATAAA-A------G-T-T--------G--AC----------TTTGGAG-AAGAACT-----------CT-ATAAAAATTGTA-TTCTTT--CATTCTA-ATTCT------TT-AT-AT-TTTGAA-TATT-GTACATGTTTA---------C------TTGTTT----TTCTGTAAAAACT--GGAAA-T-AAA---ATGT-TTAAAC
gi|13 : aatggcagtgttaatataCTATGTTACACTGTACATATTACATG-TAT--------GCTACATGACTGTACTTTGGAG-AAAAACT-----------TTAATAAAAATTGTA-TTCTTT--TCTTCTC-GTCCT------TT-AT-A--TATGAA-TATT-C--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-
gi|14 : agca-TTGTTTA-CGTTGTA-ATCCT------TT-ATTAT-TTTGAA-TATT-G--------TA---------C------TTTTTT----GTCTGTAAATATT--GGAAA-T-AAG---ATGT-TTAAACa
gi|15 : actttaaataaatacaagcatatataacggtgctaataagaattaagaaaccatacagcgtattgctagcgtTAT----------TTTG-AG-AAGATCC-----------CT-ATAAGAATGGTA-CTATTT--TAT-CTA-ATCCT------TT-GT-ATGTTTAAAATTTT-A--------TAAAACATTATT------TTGTTT----ATCTGTAAATAAT--AAAAA-T-AAAAT-GTGT-TTAAA
gi|16 : aaaatatcaTGATTTGATTTAA---TATCT-T---T----T-CTTT------------TA------TATACATAT----T-GCATT--TTGT--AGTTACAGTAAAGGTATCCG----------A---TCTCTAAATGTACCGC-TATATTACACGGTAAATA------G-TAA--------GCTAC----------TTTGGAA-AAGAACT-----------C
gi|17 : ----------TTGGGAG-AACAACT-----------CT-ACAAGAATGATA-TT-TTT--CATGCTA-ATCTT------TT-AT-AC-TTTGAA-TGTT-G--------TA---------C------TCGTTCTGGCATACGTAAACACGCGGGGGG-G-GGGAT-ACGT-TTAAAC
gi|18 : ctcacattacatgTGGAG-AAGAACT-----------CA-ATAGGAATCGTA-TTATTT--CGTCTTA-ATCCT------TT-TT-AT-TTCGAA-TA------------TA------------------GTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAc
gi|19 : aAGAATTGAA-TTCTTT--TGCTCCT-ATCCTGAGACTCT-AT-GT-TGTGAA-TATT-G--------TA---------TA-----TGGTTT----GTTT-TAAATATT--GGAAA-T-AAAAT-AGGT-TTAA
gi|2 : TACATATACACCGTGGACCTGGAATATCATTAATCCCCTCGCCAGAAGTCCCCAACCTTCTTTAAACAAGTTCT----------------------T--TT-TTTTTTTTTTAAAAA--------AATAAAAAAGTAAAACA--------TTAATAT--CATCCATA---TTACAAATTCCTTCCTCTCTA-TATTAATGTTATATAAAATT---C-T---T----TTCTTT------------TA------TGTACATAT----TTG---T--ATTTTTAGTTACAATTAAGTTTTCTGTCA---T---AGCATCTCTAAATGTTCCGC-TATGTTACACTATAACTA------T-TTC--------ACTGT----------TTTGGAG-AAGACCT-----------CA-ATAAGAATTGTAACTATTT--CATTCTA-GTTCG------TT-AT-AT-TTGTAA-TACT-G--------TA---------C------TTTCTT----ATTCGTAAATGCT--GGAAA-T-AAAAT-ATGT-GTAAttaa
gi|20 : gacagacgtgaagaagtttttaataccatcctcaacgcacagtaaactttttacatagtaacgctttgtttccccatgacacaaatatcactatttttgaagctgtgtaaaacatatcatggctagcaatcatttctaagtagtcaataatttcctcatacgtcttaagcagatacaAACT-----------CT-ATAAGACGTGTA-TTATTT--CATTCTT-ACACT------TT-GT-AT-TTTAAA-TATT-G--------TA---------C------TTATTT----ATCTGTGAATACT--GGAAA-T-ACAAC-ATGT-TTA
gi|21 : -ATAAGGATCATA-TTCTTC--CGTTCTA-ATCCT------TT-AC-AT-TTTGTA-AACT-G--------TA---------C------GTGTTT----ATCTGAAAATACT--GAAAA-T-TAAAT-ATGT-GTAAc
gi|22 : TCTAAATGTACT-TCTATGTTACATGGTAAA-A------GTTAT--------ACTAC----------TTT---G-AAGAACT-----------TT-ATAATAGTTGTA-TTCCT
gi|23 : catA-TTATTT--CATTCTA-ATCCT------TT-CC-AT-TGGTAA-TAGT-G--------TA---------C------ATGTCT----TTCTGTAAGTACT--GGAAA-T-GTAAT-GTTT-TTAAAattttttcc
gi|24 : TTGTA-TTCTTT--TGTTCTT-ATCCT------TT-AT-GT-TTTG----ATT-G--------TA---------T------GCACCT----TTCTGTAAATACT--GGAAA-T-AGATC-ATGT-
gi|25 : T------TT-AT-AT-TTTGAA-TGGT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-GAAATAATTT-TTAAg
gi|26 : atTCCT------TC-AT-GA-TTTGAA-C--T-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-TAAAT-GT-T-TTAA
gi|27 : -ATCCT------TTTAT-GT-TTTGCA-TATTTG--------TA---------C------TTGTTA----ATCTGT-----------AAA-T-AAAAT-ATGT-TT
gi|28 : TTT-----TCTGTAAATACT--GGAAA-T-AAAAC-ATGTCTTAAca
gi|3 : cTACATATACACCGTGGATCCAGGCTAACACAGACCAACTCGCCGAGAGTCCCC-------------CAAA--CT----------------------TATTTATTT---------AAAGAGAATCAAATAG-----TAACACA--------TAAATAC--CATCCATA---TTTCCAGTT-CT----CTCTA-TCTTAATTTGATTTAA---T---C-T---TCTTTT-CTTT------------TACATGTATATACATAT----TTG---G--TTGTTCAGTTACAATGCCGTTTTCTGTTA---TCGTG---TCTCTAAATGTTCCGCTT-TGTTTCACTGTAAATA------T-TAA--------GCTAC----------TTTATAG-AAGAACT-----------CT-ATAAGATTTGTA-CTATTT--CGTTCTA-ATCAT------TT-GT-AT-GTTGAA-TATT-G--------CA---------C------TTATTT----AGCTGTAA--ACT--G---------AAT-CTGT-ATAAAC
gi|4 : tatactctctccctatgtacattatctttaattttacttggaaacgctttgcttccccatgaaaacaaaaatgtgcaaaaagttattatggctagcaatcatttctaagaaatatttcgtttatttttgacatacgtctaaaagcagatacaTACATATACACCTTA-ACCCGGGCTATCACTGATATCCTCACAAAAAGTCCCC-------------CAAG----------------------------------T---------AAA--------AATAG-----TAAAATA--------TAAATAT--AATCCATA---TTACAACTTTCT----CTCTA-TCTCAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTTAGTTACAATACAGATTTCTGTTA---T---A---CCTCTAAATGTCCCACCCAAGTTTTACTGTAGATA------G-TGT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGCG-TTCTAT--CGTTCTT-GCCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGCAAAAACT--GGAAA-TAAAAAT-ATGT-TTAAACc
gi|5 : CATCGATCCCCTCAACAGAAGTCCCC-------------CAA-----------------------------------------------A--------GATAT-----T--------------TAAGTTTTCCTTTTATAAAATCAAAAGTTCC---------AGCCTTAATTTAATCTAA---T-----T---T----T-CTTT------------TA------TATATATCT----CTG---T--TTGTTTAGTTATAATAAAGGTTTCTGTTT---T---C---TCTCTAAA-GTATCGCC-ATGGTAAACTGTAAATA------G-TATTTATAAAAGCTAC----------TATGGAG-AAGAACT-----------CT-ACGAGAATTGTT-TTCTTT--TGTTCTT-ATCCT------TT-AT-AT-TTTCAA-TATT-G--------TA---------C------TTGCTT----ATCGGTAAATTCT--GGTAA-T-AAAAT-GTGT-
gi|6 : A--------AATTC-----TAAAACA--------TAAATAT--TATCCACA---TTACAAGTTTCT----CTCTA-TCTTAGTTTGGTTAAACT-T---CTT---T----T-CTTT------------TA------TTTACATATGTGCTTA---TTCTTGTTCAGTTACAATAAAGATTTTT-TTATCGT---A---TCTCTACATGTACCG-CTATGTTATACCGTACACA------T-TAT--------TCTGA----------TTTGGAG-AAGAACT-----------TT-ACAAGAATTAAA-TT-TTC--TGTTCCA-ATTGT------TT-AT---------A-TATT-G--------TA---------C------TTTTTT----ATCTGATAATACT--aga
gi|7 : cAGAACT-----------CT-ATGAGAATTGTA-TTTTTTTTCGTTCAT-ATCCT------TT-AT-AT-TTTGAA-CATT-G--------TA---------T------TTGTTA----ATCTGTAAAAACT--GGAAA-T-AAAAT-ATGT-TTAA
gi|8 : ttgtatgaatattgttgtgttatatggttgctttatcaactaccaatcgcctgtttaaaactttgattgtaataaacagtgcatgtgttagttatcttaatgcacgtgctaaaaatTAG----------TTTTGAG-AAGAACT-----------CT-GTAAGAATTGTA-TTCTTG--CATTCTA-ATCCT------TT-AC-AT-TTTGTA-TACT-G--------TA---------C------TTGTTT----ATCTGATTATACT--GAAAA-T-AAAAT-ATGT-TT
gi|9 : aagctcacttgtttcattttcagtattagtgattatattagttgcagttaattatattttctttaagaaagaagcaattattggttatgatttctacaatcaaTATTCAATTACAACAACATTGTCTGTTA---T---CGTTTTTCTAAATGAACCGCC-ATGTTACACTGCA--TA------T-TGT--------GCTTT----------TTCGGAG-AAGAACCTTATAATAAAATT-ATAAGAATTATA-CTTTTC--CGTTCTA-ATACT------TT-TTCAT-TTTTTA-TATT-G--------TA---------C------TTGTTT----ATCTGAAAATAAT--GAAAA-T-AAAAT-ATGT-TTAAAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 666666666666666666666666666666666666666666666666666666666666666666666666 111111 22222222 111 1111 222222222222222222 222222222222 111111 1111 111111 22222222222 2222222222222222222 1111111111 11111111111
lowQualScore : 0 2 0 6 22 1 6 999999999999999999999999999999999999999999999999999999999999999999999999 777777 44444444 99 111 4 4444 6 888888888888888888 5 999999999999 666666 2222 222222 1 1 88888888888 8888 0 0 0000000000000000000 0000000000 2 00000000000 2 1 4 44 22 444444 1 3 1 1 1 55555555 7777777777777777 3333 22 1 1 1 1
lowQualScore : . . . . .. . . ........................................................................ ...... ........ .. ... . .... . .................. . ............ ...... .... ...... . . ........... .... . . ................... .......... . ........... . . . .. .. ...... . . . . . ........ ................ .... .. . . . .
lowQualScore : 2 5 2 5 88 4 4 666666666666666666666666666666666666666666666666666666666666666666666666 777777 22222222 22 777 2 2222 7 111111111111111111 7 333333333333 444444 1111 333333 0 0 77777777777 7777 8 8 8888888888888888888 9999999999 4 00000000000 1 7 4 33 11 666666 6 2 6 6 6 88888888 2222222222222222 3333 11 6 6 6 6
consensus : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
Reference ( family-1224 ) : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
gi|1 : TACATATACACCATGGAACCGG-CTGTCAACGATCTCCTCGCCA--AGTCCCC-------------TAAG--CTAATTTTGGTTTATTTAAGTACTC--TT-TTT---------AAA--------AA-AA-----TAAAATAATGAACAATAAATAT--CACCCATA---TTACAAGTTTTT----CTCTA-TCCTAATTCGATTTGA---T---C-TCCTT----T-CTTTATATATATTATATA------TATATATAT----TTG---T--TTGTTCAGTTACATCAAAGTTTTCTGTTA---TCGTA---TCTCTAAATGCACCGT-TATGTTACACTGTAAACA------T-CAT--------GCTAC----------TTTGGAACAAGAACT-----------CT-ATTCGAATTGTA-TTATTT--TATTCTT-ACCGT------TT-AT-AT-TTTGAA-TTCT-G--------TA---------C------TTGTTT----GTCTGTTAATACT--GAAAA-T-AAAAT-ATGT-TTAAGC
gi|10 : agacagacgaggggaactttttaaatatatctctccccctaggcacattatcttataatatgatttaacacggaaacgctttgctttcttatgaaacagatatcaataattttgaagctgaacatagtttattgtggcttgcaatcgttcctaagtcatgtttgctcaaatttccccatactcattaaaacagatacacaTTTCTAACA---T---A---TTTCTAAATGTACTTCAT-TATTACACTGCAAATG------G-TAA--------GTTAT----------TTTGGGA-TAAAATT-----------CT-ATAATACGCGTA-TTCTTT--CCTTCAA-GTTTT------AT-AT-AT-CGTAAA-CATT-G--------TA---------C------ACGTCT----CTCTGTAAACACG--GAAAA-T-AAAAT-AAGG-TTAAAC
gi|11 : agttacccgtctatttctaTTACAAT---GTTTACTGTGA---C---G---CTTATCACTGTAC----TACGTTTC--TCCAGATA----------C--------GC-AC----------TT-GGAG-AAAAACT-----------CT-GTAA----------TCTTT--CGTTCTAGATCCA------TT-TT-AT-TGTGAA-TAAT-T--------TA---------CATGATTTTTTTT----ATCTATAAAAACT--GGAAATT-AAAAT-ATGT-TTAAACa
gi|12 : ATATTACA-TATAAA-A------G-T-T--------G--AC----------TTTGGAG-AAGAACT-----------CT-ATAAAAATTGTA-TTCTTT--CATTCTA-ATTCT------TT-AT-AT-TTTGAA-TATT-GTACATGTTTA---------C------TTGTTT----TTCTGTAAAAACT--GGAAA-T-AAA---ATGT-TTAAAC
gi|13 : aatggcagtgttaatataCTATGTTACACTGTACATATTACATG-TAT--------GCTACATGACTGTACTTTGGAG-AAAAACT-----------TTAATAAAAATTGTA-TTCTTT--TCTTCTC-GTCCT------TT-AT-A--TATGAA-TATT-C--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-
gi|14 : agca-TTGTTTA-CGTTGTA-ATCCT------TT-ATTAT-TTTGAA-TATT-G--------TA---------C------TTTTTT----GTCTGTAAATATT--GGAAA-T-AAG---ATGT-TTAAACa
gi|15 : actttaaataaatacaagcatatataacggtgctaataagaattaagaaaccatacagcgtattgctagcgtTAT----------TTTG-AG-AAGATCC-----------CT-ATAAGAATGGTA-CTATTT--TAT-CTA-ATCCT------TT-GT-ATGTTTAAAATTTT-A--------TAAAACATTATT------TTGTTT----ATCTGTAAATAAT--AAAAA-T-AAAAT-GTGT-TTAAA
gi|16 : aaaatatcaTGATTTGATTTAA---TATCT-T---T----T-CTTT------------TA------TATACATAT----T-GCATT--TTGT--AGTTACAGTAAAGGTATCCG----------A---TCTCTAAATGTACCGC-TATATTACACGGTAAATA------G-TAA--------GCTAC----------TTTGGAA-AAGAACT-----------C
gi|17 : ----------TTGGGAG-AACAACT-----------CT-ACAAGAATGATA-TT-TTT--CATGCTA-ATCTT------TT-AT-AC-TTTGAA-TGTT-G--------TA---------C------TCGTTCTGGCATACGTAAACACGCGGGGGG-G-GGGAT-ACGT-TTAAAC
gi|18 : ctcacattacatgTGGAG-AAGAACT-----------CA-ATAGGAATCGTA-TTATTT--CGTCTTA-ATCCT------TT-TT-AT-TTCGAA-TA------------TA------------------GTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAc
gi|19 : aAGAATTGAA-TTCTTT--TGCTCCT-ATCCTGAGACTCT-AT-GT-TGTGAA-TATT-G--------TA---------TA-----TGGTTT----GTTT-TAAATATT--GGAAA-T-AAAAT-AGGT-TTAA
gi|2 : TACATATACACCGTGGACCTGGAATATCATTAATCCCCTCGCCAGAAGTCCCCAACCTTCTTTAAACAAGTTCT----------------------T--TT-TTTTTTTTTTAAAAA--------AATAAAAAAGTAAAACA--------TTAATAT--CATCCATA---TTACAAATTCCTTCCTCTCTA-TATTAATGTTATATAAAATT---C-T---T----TTCTTT------------TA------TGTACATAT----TTG---T--ATTTTTAGTTACAATTAAGTTTTCTGTCA---T---AGCATCTCTAAATGTTCCGC-TATGTTACACTATAACTA------T-TTC--------ACTGT----------TTTGGAG-AAGACCT-----------CA-ATAAGAATTGTAACTATTT--CATTCTA-GTTCG------TT-AT-AT-TTGTAA-TACT-G--------TA---------C------TTTCTT----ATTCGTAAATGCT--GGAAA-T-AAAAT-ATGT-GTAAttaa
gi|20 : gacagacgtgaagaagtttttaataccatcctcaacgcacagtaaactttttacatagtaacgctttgtttccccatgacacaaatatcactatttttgaagctgtgtaaaacatatcatggctagcaatcatttctaagtagtcaataatttcctcatacgtcttaagcagatacaAACT-----------CT-ATAAGACGTGTA-TTATTT--CATTCTT-ACACT------TT-GT-AT-TTTAAA-TATT-G--------TA---------C------TTATTT----ATCTGTGAATACT--GGAAA-T-ACAAC-ATGT-TTA
gi|21 : -ATAAGGATCATA-TTCTTC--CGTTCTA-ATCCT------TT-AC-AT-TTTGTA-AACT-G--------TA---------C------GTGTTT----ATCTGAAAATACT--GAAAA-T-TAAAT-ATGT-GTAAc
gi|22 : TCTAAATGTACT-TCTATGTTACATGGTAAA-A------GTTAT--------ACTAC----------TTT---G-AAGAACT-----------TT-ATAATAGTTGTA-TTCCT
gi|23 : catA-TTATTT--CATTCTA-ATCCT------TT-CC-AT-TGGTAA-TAGT-G--------TA---------C------ATGTCT----TTCTGTAAGTACT--GGAAA-T-GTAAT-GTTT-TTAAAattttttcc
gi|24 : TTGTA-TTCTTT--TGTTCTT-ATCCT------TT-AT-GT-TTTG----ATT-G--------TA---------T------GCACCT----TTCTGTAAATACT--GGAAA-T-AGATC-ATGT-
gi|25 : T------TT-AT-AT-TTTGAA-TGGT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-GAAATAATTT-TTAAg
gi|26 : atTCCT------TC-AT-GA-TTTGAA-C--T-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-TAAAT-GT-T-TTAA
gi|27 : -ATCCT------TTTAT-GT-TTTGCA-TATTTG--------TA---------C------TTGTTA----ATCTGT-----------AAA-T-AAAAT-ATGT-TT
gi|28 : TTT-----TCTGTAAATACT--GGAAA-T-AAAAC-ATGTCTTAAca
gi|3 : cTACATATACACCGTGGATCCAGGCTAACACAGACCAACTCGCCGAGAGTCCCC-------------CAAA--CT----------------------TATTTATTT---------AAAGAGAATCAAATAG-----TAACACA--------TAAATAC--CATCCATA---TTTCCAGTT-CT----CTCTA-TCTTAATTTGATTTAA---T---C-T---TCTTTT-CTTT------------TACATGTATATACATAT----TTG---G--TTGTTCAGTTACAATGCCGTTTTCTGTTA---TCGTG---TCTCTAAATGTTCCGCTT-TGTTTCACTGTAAATA------T-TAA--------GCTAC----------TTTATAG-AAGAACT-----------CT-ATAAGATTTGTA-CTATTT--CGTTCTA-ATCAT------TT-GT-AT-GTTGAA-TATT-G--------CA---------C------TTATTT----AGCTGTAA--ACT--G---------AAT-CTGT-ATAAAC
gi|4 : tatactctctccctatgtacattatctttaattttacttggaaacgctttgcttccccatgaaaacaaaaatgtgcaaaaagttattatggctagcaatcatttctaagaaatatttcgtttatttttgacatacgtctaaaagcagatacaTACATATACACCTTA-ACCCGGGCTATCACTGATATCCTCACAAAAAGTCCCC-------------CAAG----------------------------------T---------AAA--------AATAG-----TAAAATA--------TAAATAT--AATCCATA---TTACAACTTTCT----CTCTA-TCTCAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTTAGTTACAATACAGATTTCTGTTA---T---A---CCTCTAAATGTCCCACCCAAGTTTTACTGTAGATA------G-TGT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGCG-TTCTAT--CGTTCTT-GCCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGCAAAAACT--GGAAA-TAAAAAT-ATGT-TTAAACc
gi|5 : CATCGATCCCCTCAACAGAAGTCCCC-------------CAA-----------------------------------------------A--------GATAT-----T--------------TAAGTTTTCCTTTTATAAAATCAAAAGTTCC---------AGCCTTAATTTAATCTAA---T-----T---T----T-CTTT------------TA------TATATATCT----CTG---T--TTGTTTAGTTATAATAAAGGTTTCTGTTT---T---C---TCTCTAAA-GTATCGCC-ATGGTAAACTGTAAATA------G-TATTTATAAAAGCTAC----------TATGGAG-AAGAACT-----------CT-ACGAGAATTGTT-TTCTTT--TGTTCTT-ATCCT------TT-AT-AT-TTTCAA-TATT-G--------TA---------C------TTGCTT----ATCGGTAAATTCT--GGTAA-T-AAAAT-GTGT-
gi|6 : A--------AATTC-----TAAAACA--------TAAATAT--TATCCACA---TTACAAGTTTCT----CTCTA-TCTTAGTTTGGTTAAACT-T---CTT---T----T-CTTT------------TA------TTTACATATGTGCTTA---TTCTTGTTCAGTTACAATAAAGATTTTT-TTATCGT---A---TCTCTACATGTACCG-CTATGTTATACCGTACACA------T-TAT--------TCTGA----------TTTGGAG-AAGAACT-----------TT-ACAAGAATTAAA-TT-TTC--TGTTCCA-ATTGT------TT-AT---------A-TATT-G--------TA---------C------TTTTTT----ATCTGATAATACT--aga
gi|7 : cAGAACT-----------CT-ATGAGAATTGTA-TTTTTTTTCGTTCAT-ATCCT------TT-AT-AT-TTTGAA-CATT-G--------TA---------T------TTGTTA----ATCTGTAAAAACT--GGAAA-T-AAAAT-ATGT-TTAA
gi|8 : ttgtatgaatattgttgtgttatatggttgctttatcaactaccaatcgcctgtttaaaactttgattgtaataaacagtgcatgtgttagttatcttaatgcacgtgctaaaaatTAG----------TTTTGAG-AAGAACT-----------CT-GTAAGAATTGTA-TTCTTG--CATTCTA-ATCCT------TT-AC-AT-TTTGTA-TACT-G--------TA---------C------TTGTTT----ATCTGATTATACT--GAAAA-T-AAAAT-ATGT-TT
gi|9 : aagctcacttgtttcattttcagtattagtgattatattagttgcagttaattatattttctttaagaaagaagcaattattggttatgatttctacaatcaaTATTCAATTACAACAACATTGTCTGTTA---T---CGTTTTTCTAAATGAACCGCC-ATGTTACACTGCA--TA------T-TGT--------GCTTT----------TTCGGAG-AAGAACCTTATAATAAAATT-ATAAGAATTATA-CTTTTC--CGTTCTA-ATACT------TT-TTCAT-TTTTTA-TATT-G--------TA---------C------TTGTTT----ATCTGAAAATAAT--GAAAA-T-AAAAT-ATGT-TTAAAC
blockSeqs : G A TT C G AACCTTCTTTAAACAAGTTCTTTTTTTTTTTTTTAAAAA AAAAAG . TC AAA C TCCT G TCTTCTTT T . CATGTA GTGC CATT A T TAGCA TCAT GTATTTATAAAA ATGACTGTAC . TTATAATAAAA A A C TT AG GAGACT T T G A T TACATGTT AAACATTATT TGGC CG T A A C
blockSeqs : G G CA A A CAAACTTATTTATTTAAAGAGAATCA G . . . T . . TATCTTT . . . . TTC T G TCGTG GCTT TTACATGTAT . . . . . C A A . . C . . . . CATGATT . . . . . .
blockSeqs : . G CT T A CAAGTAAA G . . . C . . AATTCTT . . . . T G T TCGTA ACCC GTTAT . . . . . C . A . . . . . . . TA . . . . . .
blockSeqs : TC C G CAAA T . . . T . . CTTCTTT . . . . G A T TCGTT GCT GTAA . . . . . C . C . . . . . . . C . . . . . .
blockSeqs : C . . . . . . TCTT . . . . T A A TA GCT GTAA . . . . . G . A . . . . . . . C . . . . . .
blockSeqs : TTT . . . . T A G CG TCT TTTC . . . . . A . A . . . . . . . C . . . . . .
blockSeqs : A A TA GCC TTAA . . . . . A . A . . . . . . . C . . . . . .
blockSeqs : . T TC GCT GTGT . . . . . C . A . . . . . . . C . . . . . .
blockSeqs : A GCC TTAT . . . . . A . T . . . . . . . C . . . . . .
blockSeqs : T TTGT . . . . . A . A . . . . . . . C . . . . . .
blockSeqs : GTT . . . . . C . T . . . . . . . C . . . . . .
blockSeqs : C . . . . . C . A . . . . . . . C . . . . . .
blockSeqs : . . . . . A . A . . . . . . . T . . . . . .
blockSeqs : . . . . . C . T . . . . . . . C . . . . . .
blockSeqs : . . . . . A . A . . . . . . . C . . . . . .
blockSeqs : . . . . C . T . . . . . . . C . . . . . .
blockSeqs : . . . C . T . . . . . . . C . . . . . .
blockSeqs : . . . T . A . . . . . . . C . . . . . .
blockSeqs : . C . T . . . . . . . C . . . . . .
blockSeqs : . T . A . . . . . . . C . . . . . .
blockSeqs : . . . A . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ******** ************
originalCons : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
finalCons : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 666666666666666666666666666666666666666666666666666666666666666666666666 111111 22222222 111 1111 222222222222222222 222222222222 111111 1111 111111 22222222222 2222222222222222222 1111111111 11111111111
lowQualScore : 0 2 0 6 22 1 6 999999999999999999999999999999999999999999999999999999999999999999999999 777777 44444444 99 111 4 4444 6 888888888888888888 5 999999999999 666666 2222 222222 1 1 88888888888 8888 0 0 0000000000000000000 0000000000 2 00000000000 2 1 4 44 22 444444 1 3 1 1 1 55555555 7777777777777777 3333 22 1 1 1 1
lowQualScore : . . . . .. . . ........................................................................ ...... ........ .. ... . .... . .................. . ............ ...... .... ...... . . ........... .... . . ................... .......... . ........... . . . .. .. ...... . . . . . ........ ................ .... .. . . . .
lowQualScore : 2 5 2 5 88 4 4 666666666666666666666666666666666666666666666666666666666666666666666666 777777 22222222 22 777 2 2222 7 111111111111111111 7 333333333333 444444 1111 333333 0 0 77777777777 7777 8 8 8888888888888888888 9999999999 4 00000000000 1 7 4 33 11 666666 6 2 6 6 6 88888888 2222222222222222 3333 11 6 6 6 6
consensus : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
Reference ( family-1224 ) : TACATATACACCGTGGACCCGGGCTATCACCGATCCCCTCGCCAGAAGTCCCC-------------CAAG--CT----------------------T--TT-TTT---------AAA--------AATAN-----TAAAACA--------TAAATAT--CATCCATA---TTACAAGTTTCT----CTCTA-TCTTAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTCAGTTACAATAAAGNTTTCTGTTA---T---A---TCTCTAAATGTACCGCCTATGTTACACTGTAAATA------G-TAT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGTA-TTCTTT--CGTTCTA-ATCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAAC
gi|1 : TACATATACACCATGGAACCGG-CTGTCAACGATCTCCTCGCCA--AGTCCCC-------------TAAG--CTAATTTTGGTTTATTTAAGTACTC--TT-TTT---------AAA--------AA-AA-----TAAAATAATGAACAATAAATAT--CACCCATA---TTACAAGTTTTT----CTCTA-TCCTAATTCGATTTGA---T---C-TCCTT----T-CTTTATATATATTATATA------TATATATAT----TTG---T--TTGTTCAGTTACATCAAAGTTTTCTGTTA---TCGTA---TCTCTAAATGCACCGT-TATGTTACACTGTAAACA------T-CAT--------GCTAC----------TTTGGAACAAGAACT-----------CT-ATTCGAATTGTA-TTATTT--TATTCTT-ACCGT------TT-AT-AT-TTTGAA-TTCT-G--------TA---------C------TTGTTT----GTCTGTTAATACT--GAAAA-T-AAAAT-ATGT-TTAAGC
gi|10 : agacagacgaggggaactttttaaatatatctctccccctaggcacattatcttataatatgatttaacacggaaacgctttgctttcttatgaaacagatatcaataattttgaagctgaacatagtttattgtggcttgcaatcgttcctaagtcatgtttgctcaaatttccccatactcattaaaacagatacacaTTTCTAACA---T---A---TTTCTAAATGTACTTCAT-TATTACACTGCAAATG------G-TAA--------GTTAT----------TTTGGGA-TAAAATT-----------CT-ATAATACGCGTA-TTCTTT--CCTTCAA-GTTTT------AT-AT-AT-CGTAAA-CATT-G--------TA---------C------ACGTCT----CTCTGTAAACACG--GAAAA-T-AAAAT-AAGG-TTAAAC
gi|11 : agttacccgtctatttctaTTACAAT---GTTTACTGTGA---C---G---CTTATCACTGTAC----TACGTTTC--TCCAGATA----------C--------GC-AC----------TT-GGAG-AAAAACT-----------CT-GTAA----------TCTTT--CGTTCTAGATCCA------TT-TT-AT-TGTGAA-TAAT-T--------TA---------CATGATTTTTTTT----ATCTATAAAAACT--GGAAATT-AAAAT-ATGT-TTAAACa
gi|12 : ATATTACA-TATAAA-A------G-T-T--------G--AC----------TTTGGAG-AAGAACT-----------CT-ATAAAAATTGTA-TTCTTT--CATTCTA-ATTCT------TT-AT-AT-TTTGAA-TATT-GTACATGTTTA---------C------TTGTTT----TTCTGTAAAAACT--GGAAA-T-AAA---ATGT-TTAAAC
gi|13 : aatggcagtgttaatataCTATGTTACACTGTACATATTACATG-TAT--------GCTACATGACTGTACTTTGGAG-AAAAACT-----------TTAATAAAAATTGTA-TTCTTT--TCTTCTC-GTCCT------TT-AT-A--TATGAA-TATT-C--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-
gi|14 : agca-TTGTTTA-CGTTGTA-ATCCT------TT-ATTAT-TTTGAA-TATT-G--------TA---------C------TTTTTT----GTCTGTAAATATT--GGAAA-T-AAG---ATGT-TTAAACa
gi|15 : actttaaataaatacaagcatatataacggtgctaataagaattaagaaaccatacagcgtattgctagcgtTAT----------TTTG-AG-AAGATCC-----------CT-ATAAGAATGGTA-CTATTT--TAT-CTA-ATCCT------TT-GT-ATGTTTAAAATTTT-A--------TAAAACATTATT------TTGTTT----ATCTGTAAATAAT--AAAAA-T-AAAAT-GTGT-TTAAA
gi|16 : aaaatatcaTGATTTGATTTAA---TATCT-T---T----T-CTTT------------TA------TATACATAT----T-GCATT--TTGT--AGTTACAGTAAAGGTATCCG----------A---TCTCTAAATGTACCGC-TATATTACACGGTAAATA------G-TAA--------GCTAC----------TTTGGAA-AAGAACT-----------C
gi|17 : ----------TTGGGAG-AACAACT-----------CT-ACAAGAATGATA-TT-TTT--CATGCTA-ATCTT------TT-AT-AC-TTTGAA-TGTT-G--------TA---------C------TCGTTCTGGCATACGTAAACACGCGGGGGG-G-GGGAT-ACGT-TTAAAC
gi|18 : ctcacattacatgTGGAG-AAGAACT-----------CA-ATAGGAATCGTA-TTATTT--CGTCTTA-ATCCT------TT-TT-AT-TTCGAA-TA------------TA------------------GTTT----ATCTGTAAATACT--GGAAA-T-AAAAT-ATGT-TTAAc
gi|19 : aAGAATTGAA-TTCTTT--TGCTCCT-ATCCTGAGACTCT-AT-GT-TGTGAA-TATT-G--------TA---------TA-----TGGTTT----GTTT-TAAATATT--GGAAA-T-AAAAT-AGGT-TTAA
gi|2 : TACATATACACCGTGGACCTGGAATATCATTAATCCCCTCGCCAGAAGTCCCCAACCTTCTTTAAACAAGTTCT----------------------T--TT-TTTTTTTTTTAAAAA--------AATAAAAAAGTAAAACA--------TTAATAT--CATCCATA---TTACAAATTCCTTCCTCTCTA-TATTAATGTTATATAAAATT---C-T---T----TTCTTT------------TA------TGTACATAT----TTG---T--ATTTTTAGTTACAATTAAGTTTTCTGTCA---T---AGCATCTCTAAATGTTCCGC-TATGTTACACTATAACTA------T-TTC--------ACTGT----------TTTGGAG-AAGACCT-----------CA-ATAAGAATTGTAACTATTT--CATTCTA-GTTCG------TT-AT-AT-TTGTAA-TACT-G--------TA---------C------TTTCTT----ATTCGTAAATGCT--GGAAA-T-AAAAT-ATGT-GTAAttaa
gi|20 : gacagacgtgaagaagtttttaataccatcctcaacgcacagtaaactttttacatagtaacgctttgtttccccatgacacaaatatcactatttttgaagctgtgtaaaacatatcatggctagcaatcatttctaagtagtcaataatttcctcatacgtcttaagcagatacaAACT-----------CT-ATAAGACGTGTA-TTATTT--CATTCTT-ACACT------TT-GT-AT-TTTAAA-TATT-G--------TA---------C------TTATTT----ATCTGTGAATACT--GGAAA-T-ACAAC-ATGT-TTA
gi|21 : -ATAAGGATCATA-TTCTTC--CGTTCTA-ATCCT------TT-AC-AT-TTTGTA-AACT-G--------TA---------C------GTGTTT----ATCTGAAAATACT--GAAAA-T-TAAAT-ATGT-GTAAc
gi|22 : TCTAAATGTACT-TCTATGTTACATGGTAAA-A------GTTAT--------ACTAC----------TTT---G-AAGAACT-----------TT-ATAATAGTTGTA-TTCCT
gi|23 : catA-TTATTT--CATTCTA-ATCCT------TT-CC-AT-TGGTAA-TAGT-G--------TA---------C------ATGTCT----TTCTGTAAGTACT--GGAAA-T-GTAAT-GTTT-TTAAAattttttcc
gi|24 : TTGTA-TTCTTT--TGTTCTT-ATCCT------TT-AT-GT-TTTG----ATT-G--------TA---------T------GCACCT----TTCTGTAAATACT--GGAAA-T-AGATC-ATGT-
gi|25 : T------TT-AT-AT-TTTGAA-TGGT-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-GAAATAATTT-TTAAg
gi|26 : atTCCT------TC-AT-GA-TTTGAA-C--T-G--------TA---------C------TTGTTT----ATCTGTAAATACT--GGAAA-T-TAAAT-GT-T-TTAA
gi|27 : -ATCCT------TTTAT-GT-TTTGCA-TATTTG--------TA---------C------TTGTTA----ATCTGT-----------AAA-T-AAAAT-ATGT-TT
gi|28 : TTT-----TCTGTAAATACT--GGAAA-T-AAAAC-ATGTCTTAAca
gi|3 : cTACATATACACCGTGGATCCAGGCTAACACAGACCAACTCGCCGAGAGTCCCC-------------CAAA--CT----------------------TATTTATTT---------AAAGAGAATCAAATAG-----TAACACA--------TAAATAC--CATCCATA---TTTCCAGTT-CT----CTCTA-TCTTAATTTGATTTAA---T---C-T---TCTTTT-CTTT------------TACATGTATATACATAT----TTG---G--TTGTTCAGTTACAATGCCGTTTTCTGTTA---TCGTG---TCTCTAAATGTTCCGCTT-TGTTTCACTGTAAATA------T-TAA--------GCTAC----------TTTATAG-AAGAACT-----------CT-ATAAGATTTGTA-CTATTT--CGTTCTA-ATCAT------TT-GT-AT-GTTGAA-TATT-G--------CA---------C------TTATTT----AGCTGTAA--ACT--G---------AAT-CTGT-ATAAAC
gi|4 : tatactctctccctatgtacattatctttaattttacttggaaacgctttgcttccccatgaaaacaaaaatgtgcaaaaagttattatggctagcaatcatttctaagaaatatttcgtttatttttgacatacgtctaaaagcagatacaTACATATACACCTTA-ACCCGGGCTATCACTGATATCCTCACAAAAAGTCCCC-------------CAAG----------------------------------T---------AAA--------AATAG-----TAAAATA--------TAAATAT--AATCCATA---TTACAACTTTCT----CTCTA-TCTCAATTTGATTTAA---T---C-T---T----T-CTTT------------TA------TATACATAT----TTG---T--TTGTTTAGTTACAATACAGATTTCTGTTA---T---A---CCTCTAAATGTCCCACCCAAGTTTTACTGTAGATA------G-TGT--------GCTAC----------TTTGGAG-AAGAACT-----------CT-ATAAGAATTGCG-TTCTAT--CGTTCTT-GCCCT------TT-AT-AT-TTTGAA-TATT-G--------TA---------C------TTGTTT----ATCTGCAAAAACT--GGAAA-TAAAAAT-ATGT-TTAAACc
gi|5 : CATCGATCCCCTCAACAGAAGTCCCC-------------CAA-----------------------------------------------A--------GATAT-----T--------------TAAGTTTTCCTTTTATAAAATCAAAAGTTCC---------AGCCTTAATTTAATCTAA---T-----T---T----T-CTTT------------TA------TATATATCT----CTG---T--TTGTTTAGTTATAATAAAGGTTTCTGTTT---T---C---TCTCTAAA-GTATCGCC-ATGGTAAACTGTAAATA------G-TATTTATAAAAGCTAC----------TATGGAG-AAGAACT-----------CT-ACGAGAATTGTT-TTCTTT--TGTTCTT-ATCCT------TT-AT-AT-TTTCAA-TATT-G--------TA---------C------TTGCTT----ATCGGTAAATTCT--GGTAA-T-AAAAT-GTGT-
gi|6 : A--------AATTC-----TAAAACA--------TAAATAT--TATCCACA---TTACAAGTTTCT----CTCTA-TCTTAGTTTGGTTAAACT-T---CTT---T----T-CTTT------------TA------TTTACATATGTGCTTA---TTCTTGTTCAGTTACAATAAAGATTTTT-TTATCGT---A---TCTCTACATGTACCG-CTATGTTATACCGTACACA------T-TAT--------TCTGA----------TTTGGAG-AAGAACT-----------TT-ACAAGAATTAAA-TT-TTC--TGTTCCA-ATTGT------TT-AT---------A-TATT-G--------TA---------C------TTTTTT----ATCTGATAATACT--aga
gi|7 : cAGAACT-----------CT-ATGAGAATTGTA-TTTTTTTTCGTTCAT-ATCCT------TT-AT-AT-TTTGAA-CATT-G--------TA---------T------TTGTTA----ATCTGTAAAAACT--GGAAA-T-AAAAT-ATGT-TTAA
gi|8 : ttgtatgaatattgttgtgttatatggttgctttatcaactaccaatcgcctgtttaaaactttgattgtaataaacagtgcatgtgttagttatcttaatgcacgtgctaaaaatTAG----------TTTTGAG-AAGAACT-----------CT-GTAAGAATTGTA-TTCTTG--CATTCTA-ATCCT------TT-AC-AT-TTTGTA-TACT-G--------TA---------C------TTGTTT----ATCTGATTATACT--GAAAA-T-AAAAT-ATGT-TT
gi|9 : aagctcacttgtttcattttcagtattagtgattatattagttgcagttaattatattttctttaagaaagaagcaattattggttatgatttctacaatcaaTATTCAATTACAACAACATTGTCTGTTA---T---CGTTTTTCTAAATGAACCGCC-ATGTTACACTGCA--TA------T-TGT--------GCTTT----------TTCGGAG-AAGAACCTTATAATAAAATT-ATAAGAATTATA-CTTTTC--CGTTCTA-ATACT------TT-TTCAT-TTTTTA-TATT-G--------TA---------C------TTGTTT----ATCTGAAAATAAT--GAAAA-T-AAAAT-ATGT-TTAAAC