lowQualScore : 555555555555555555555 11 111 1 1111111 11111111 11111111 2222222222222 11 2222222222222222222222222 3333333
lowQualScore : 88 2 000000000000000000000 8 66 2 3 999 44 1 999999 4444444 44444444 44 3 3 9999 11111111 2 7777777777777 44 9999999999999999999999999 2 6666 3 7777777 6 66
lowQualScore : .. . ..................... . .. . . ... .. . ...... ....... ........ .. . . .... ........ . ............. .. ......................... . .... . ....... . ..
lowQualScore : 55 5 222222222222222222222 0 00 0 6 222 66 1 666666 2222222 22222222 22 1 1 6666 99999999 8 9999999999999 11 2222222222222222222222222 9 1111 1 9999999 2 99
consensus : NNNNNNNNNNNNNTATANTTNTTTTCC-TTTTGTA--ATTGTGAT-TTTTT-TCGTCATCGTC-ATGTACATACTGTATT--TATAA------TATA-------ATAC--TATNGTTT--G-T-CAAATTGTA----TAT-------GTTCTGTCA-TT----T---ANAAAT-GTATA-------TG-T-TN-----------ATGCTC-T----CCTATACCATT-GGAGGAAATAAAATAT-CT-ATCTTATC--TTGT
Reference ( gi|6 ) : TTCATATCATCAATATGGTTGTTTT---TTTT-TA--ATTGTGAC-TTTTT-TTGCCATTGTC-ATGTAAATACTGTATT--TGTAA------TATA-------ATAC--TGTTGTTT--G-T-CAAATTGTA----TAT-------GTTCTGTCA-AT----T---AAAAAA-GTATA-------TG-T-TA-----------ATGCTC-T----CCTATACCATT-GGAGGAAATAAAAGAT-ATAATCCTATC--TTGTAGAAACGTA
gi|9 : TATACTTGTTTT---TTT-----------G---TTTTT-TTGT-ACTGTC-ATGTACATACTGTACT--TACAA------TATATGATACAATAC--TATGATTT--G-A-CAAATCATA----TAT-------GTTCTGTAA-TT----T---AAAAAT-GTATA-------TA-TGTAT----------ATGCTC-TTTGGCCTATAGCAAT-AGAGGAAATAAAATAT-
gi|1 : gtgatGTTTTTTTCC-TTTTATA--ATTGTGA--TTTTT-TCGTCATCATC-ATGTACTTACTGTATT--TATAA------TATG-------ATTC--AATAGTTT--G-T-TAAATTGTATAATTAC-------GTTCTTTTA-TT----T--------T-GTATAACTTTTGTG-T-TT-----------ATGCTC-T----CCTGTTCCATC-GCAGGAAATAAAA-----------TATC--TTGTctta
gi|5 : attgtatgttttgttcttagtttatatgaatgattttatctctataaatgtaagataaccatattacattcataaagcaataattctggcattaaataaacgatcacttacattgtattgtaatattgtataattacatgtagttagttgcaagtgattatatataattatgttgtttttttgtgtgtTTGTCTTCCCTTCTGTA--ATTGTGATATCTTTATCGTCATTGTC-A--------CCGTATT--T---A------TATA-------ATAC--TAT-GATT--G-T-TAAAGTGAA----TAT-------TGTCTGACG-TT----TTGTATATAT-GTATA-------TG-T-TT-----------ATGCTC-T----CCTATACTACT-GGAGGAAATAAAATAT-CTTATCTTATCATTTGTcgtaattcacatagttttgttaaatacacattcagtgtattcatgatt
gi|3 : tatctcaatattaaatacaaacgtaagcataaaaagttgcgttgtacgtttggtttaatttaatttaagtaattaaTTTTTTC---CTTT-TGTCATTGTG---TTTTT-TCGT-ATCATCCATGCACATACTGTATT--TATCA------TATA-------CTAT--TATGGTTT--G-T-C-AATTATA----CGT-------ATTCGGTCA-TTTTG-T---ATAAAT-GTATA-------TG-C-T------------ATGATC-T----CCTATATCACT-GGGTGGAATAAAACAT-CTTATCTTATC--gcgtgacatac
gi|8 : tgttgttgataattctaaatagtgtgtacaaaatgtttgcataaaattgttttttagtacgttttgatttaaattaatgccA--AATGTGAT-TATTT-TTGTCA--GGC-A--------CTGTGTT--TATAA------TATATA-----ATACAATATTTTTT--T-T-CAAACTGTG----TAT-------ATTCAGT-A-ATATTGT---ATAAAT-GTTTA-------TA-T-TA-----------ATGCTC-A----CTTGTACCGTT-AGAGGAAATAAAATAT-CTAATCTGATC--aatcttattaaagttcagttagcattttcaaataatt
gi|4 : tcccactctcacATCGGC-ATGTATATACTGTATT--TATTA------TTTG-------ATAA--TATGGTTT--G-T-CAAATTGTA----TAT-------ATTATGGCA-TT----T---AAAAAT-GTATA-------TG-A-TT-----------ATGCTT-T----CCTATACTATTAGAAGAAAATAGAATAT-aatttaaaggcc
gi|13 : aaatatctcatccacggatttaatcaaatgcagatgtaaaatgtttgttgcagaattaagttttgtatgattacatttggtgtttatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttatATCGTC-ATGT---CATCGTATT--TATAC------TATA-------GTAT--TACGATTT--G-T-TAAATTGTA----TAT-------GTTCTG-GA-AT----T---TGAAAA-CT-TA------------TA-----------ATGTTTAT----CATATACTACT-GGAGGAAATACAA
gi|10 : ATTGTA-ATGTTAGT--TGTATA--TCTAAGTTCCATATG-------ATTA--TATTTGGT--G-T-CAAATCGCA----TAG-------GTTGT-TCA-TT----T---AAAAAT-ATATG-------TG-T-TT-----------ATGCTC-T----CCTATATTATA-TGAGGAAATACAATATCAT-ATCTTATC--TCGta
gi|2 : TCGTC-ATGTACGTACTGTATA--TTTAA------TATA-------ATAC--TATGGTTT--G-T-CAAATTGTA----TAT-------CGTCTGTCA-TTTTG-T---ATAAAT-GTATA-------TGTT-TATGCATATATTTATGCTC-T----CCTTTACCATT-GGAAGAActgtcgcgatgtaa
gi|7 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtggttttccttattaactgtgatttttgcgccatcgtcatcaaagaactatacctcccaatttaaattccttgGTC-ATGTGCATACTGTATTTATATAA------TATA-------ATAT--TATT-TTT--G-T-GTATTCGGAC---TA----------TCTGTCATAT----T---GTATAA-ATATATACATG-TG-T-TT-----------ATACTC-T----CCTGT---ATT-TCAGGAAATAA---AT-AT-ATCTTATC--
gi|12 : tgatttttaTC-ATGTACATACTGTATT--TATAA------TATA-------ATAC--TA-TGTTA--GAT-CAGATTGTA----TAT-------ATTCTGTCA-TT----TTGCATAAAT-GTATA-------CG-T-TA-----------ATGCTC-T----CCAATACCATT-GGAGGAAATAAAAaattcaatcattaatattcatgtttgtagtttattaatt
gi|11 : GTTTT--TTTTA------TATA-------AT----TGTCACTTAAG-CACATACTGCA----TCT-------ATAATAT-A-AT----T---CAAAAACGTATA-------TG-T-GC-----------ATGGTC-T----CCTATAACATT-GGAAGAAATAAAATAT-CTTATCATATC--TTta
gi|15 : tataATA-------ATA---TG--GTTT--G-T-TAAATTATA----CATCGTTTGTGTTCTGTCA-TT----T---AAAAAT-GTATA-------TG-T-TT-----------ATGCTC-T----CCTACACagcttaccataactcatcagtaatatttt
gi|14 : -----------ATGCTC-T----CCTATACCATT-GGAGGAAATAAA--GT----ATCCTATC--TTAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CATGTGAAACTGGTTGTTCATGTAGTATACTTAA
Alignments
lowQualScore : 1111111 11111111 2222222 111111111111 1
lowQualScore : 1 1 6 5 8 1 0 0 5 4 5 1 3 1 44 3333333 444 55 44444 2 2 8888 00000000 33 2 4444444 1 33 2 5555 333333333333 4 5555 2 3 6 8 66
lowQualScore : . . . . . . . . . . . . . . .. ....... ... .. ..... . . .... ........ .. . ....... . .. . .... ............ . .... . . . . ..
lowQualScore : 0 0 7 7 9 4 3 1 0 4 7 3 3 2 66 2222222 555 55 22222 9 9 9999 44444444 77 7 3333333 0 77 7 7777 777777777777 5 7777 9 6 0 0 99
consensus : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-TCGTCATCGTC-ATGTACATACTGTATT--TATAATATA-------ATAC--TATGGTT--T--G-T-CAAATTGTA----TAT-------GTTCTGT--CAT-T---T---ANAAATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
Reference ( family-1149 ) : NNNNNNNNNNNNNTATANTTNTTTTCCTTT-TGTAATTGTGAT-TTTTT-TCGTCATCGTC-ATGTACATACTGTATT--TATAATATA-------ATAC--TATNGTT--T--G-T-CAAATTGTA----TAT-------GTTCTGT--CAT-T---T---ANAAATG--TAT-A----TG------------TTNATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
gi|1 : TTTTTTTCCTTT-TATAATTGTGAT-TTT-T-TCGTCATCATC-ATGTACTTACTGTATT--TATAATATG-------ATTC--AATAGTT--T--G-T-TAAATTGTATAATTAC-------GTTCTTT--TAT-TTTGT---ATAACTT--T-T-G----TG------------TTTATGCTCT----CCTGTTCCATC-GCAGGAAATAAAATAT-C-T-
gi|10 : attgtatgttttgttcttagtttatatgaatgattttatctctataaatgtaagataaccatattacattcataaagcaataattctggcattaaataaacgatcacttacattgtattgtaatattgtataattacatgtagttagttgcaagtgattatatataattatgttgtttttttgtgtgtgATATG-------AT----TATATTTGGT--G-T-CAAATCGCA----TAG-------GTTGT-T--CAT-T---T---AAAAATA--TAT-G----TG------------TTTATGCTCT----CCTATATTATA-TGAGGAAATACAATAT-CAT-ATCTTATC--TCGtgtcgtaattcacatagttttgttaaatacacattcagtgtattcatgatt
gi|11 : attgtaatgttagttgtatatctaagttccGTTTT--TTTTATATA-------AT----TGTCACT--TAAG-CACATACTGCA----TCT-------ATAATAT--AAT-T---C---AAAAACG--TAT-A----TG------------TGCATGGTCT----CCTATAACATT-GGAAGAAATAAAATAT-CTT-ATCATATC--TTctgtcgcgatgtaa
gi|12 : tataTC-ATGTACATACTGTATT--TATAATATA-------ATAC--TAT-GTT--A--GAT-CAGATTGTA----TAT-------ATTCTGT--CAT-T---TTGCATAAATG--TAT-A----CG------------TTAATGCTCT----CCAATACCATT-GGAGGAAATAAAATAagcttaccataactcatcagtaatatttt
gi|13 : ATCGTC-ATGT-CAT--CGTATT--TATACTATA-------GTAT--TACGATT--T--G-T-TAAATTGTA----TAT-------GTTCTGG--AAT-T---T---GAAAACT--TATAA----TG------------TTTA-----T----CATATACTACT-GGAGGAAATACAATA
gi|14 : TTCTGA--CAT-T---TT--CCAAATG--TTT-A-----A------------T--ATGCTCT----CCTATACCATT-GGAGGAAATAAAGTATCC-T-ATCTTATC--
gi|15 : a-------ATAA--TATGGTT--T--G-T-TAAATTATA----CATCGTTTGTGTTCTGT--CAT-T---T---AAAAATG--TAT-A----TG------------TTTATGCTCT----CCTACACcaaatacacaaaagcta
gi|2 : TTTTCCTTA-T-TAACTGTGAT-TTTTG--CGCCATCGTC-AT
gi|2 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtggT-TCCTTGTCGTC-ATGTACGTACTGTATA--TTTAATATA-------ATAC--TATGGTT--T--G-T-CAAATTGTA----TAT-------CGTCTGT--CAT-TTTGT---ATAAATG--TAT-A----TGTTTATGCATATATTTATGCTCT----CCTTTACCATT-GGAAGAAcaaagaactatacctcccaatttaaattccttgtcgtcatgtacgtactgtatatttaatataatactatggtttgtcaaattgtatatcgtctgtcattttgtataaatgtatatgtttatgcatatatttatgctctcctttaccattggaagaa
gi|3 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtggttttccttattaactgtgatttttgcgccatcgtcatcaaagaactatacctcccaatttaaaATGCCTTTTTTCCTTT-TGTCATTGTG---TTTTT-TCGT-ATCATCCATGCACATACTGTATT--TATCATATA-------CTAT--TATGGTT--T--G-T-C-AATTATA----CGT-------ATTCGGT--CAT-TTTGT---ATAAATG--TAT-A----TG------------CT-ATGATCT----CCTATATCACT-GGGTGGAATAAAACAT-CTT-ATCTTATC--
gi|4 : tgttgttgataattctaaatagtgtgtacaaaatgtttgcataaaattgttttttagtacgttttgatttaaattaATCGGC-ATGTATATACTGTATT--TATTATTTG-------ATAA--TATGGTT--T--G-T-CAAATTGTA----TAT-------ATTATGG--CAT-T---T---AAAAATG--TAT-A----TG------------ATTATGCTTT----CCTATACTATTAGAAGAAAATAGAATAT-aatcttattaaagttcagttagcattttcaaataatt
gi|5 : aaatatctcatccacggatttaatcaaatgcagatgtaaaatgtttgttgcagaattaagttttgtatgattacatttggtgtttatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttatTAATTGTCTTCCCTTCTGTAATTGTGATATCTTTATCGTCATTGTC-A--------CCGTATT--TATA---TA-------ATAC--TATGATT-----G-T-TAAAGTGAA----TAT-------TGTCTGA--CGT-T---TTGTATATATG--TAT-A----TG------------TTTATGCTCT----CCTATACTACT-GGAGGAAATAAAATAT-CTT-ATCTTATCATTTGT
gi|6 : tatctcaatattaaatacaaacgtaagcataaaaagttgcgttgtacgtttggtttaatttaatttaagtaatTATGGTTGTTTT--TTT-T-TAATTGTGAC-TTTTT-TTGCCATTGTC-ATGTAAATACTGTATT--TGTAATATA-------ATAC--TGTTGTT--T--G-T-CAAATTGTA----TAT-------GTTCTGT--CAA-T---T---AAAAAAG--TAT-A----TG------------TTAATGCTCT----CCTATACCATT-GGAGGAAATAAAAGAT-A-TAATCCTATC--TTGTgcgtgacatac
gi|7 : ttcatatcatcaaTGAT-TTTT-------A--GTC-ATGTGCATACTGTATTTATATAATATA-------ATAT--TATT-TT--T--G-T-GTATTCGGAC---TA----------TCTGT--CATATTG-T---ATAAATA--TAT-ACATGTG------------TTTATACTCT----CCTGT---ATT-TCAGGAAAT-AAATA----T-ATCTTATC--agaaacgta
gi|8 : CTCT-CACAAATGTGAT-TATTT-TTGTCA--GGC-A--------CTGTGTT--TATAATATATA-----ATACAATATTTTT--T--T-T-CAAACTGTG----TAT-------ATTCAGTAATAT-TG--T---ATAAATG--TTT-A----TA------------TTAATGCTCA----CTTGTACCGTT-AGAGGAAATAAAATAT-C-TAATCTGATC--aattcaatcattaatattcatgtttgtagtttattaatt
gi|9 : tcccaTATACTTGTTTT---TT-TGT-----------TTTT-TTGT-ACTGTC-ATGTACATACTGTACT--TACAATATATGATACAATAC--TATGATT--T--G-A-CAAATCATA----TAT-------GTTCTGT--AAT-T---T---AAAAATGTATAT-A----TG------------TATATGCTCTTTGGCCTATAGCAAT-AGAGGAAATAAAATAT-C-T-aatttaaaggcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CATGTGAAACTGGTTGTTCATGTAGTATACTTAA
Alignments
lowQualScore : 11111111 2222222 111111111111 1
lowQualScore : 1 2 6 5 8 1 0 0 4 666 6 0 3 6666 0 44 44 9999999 44 4 44 3 9999 00000000 33 2 4444444 1 33 2 5555 333333333333 5555 2 3 6 8 66
lowQualScore : . . . . . . . . . ... . . . .... . .. .. ....... .. . .. . .... ........ .. . ....... . .. . .... ............ .... . . . . ..
lowQualScore : 0 5 7 7 9 4 3 1 4 333 6 4 1 5555 3 66 22 3333333 22 0 22 1 6666 77777777 99 7 3333333 0 77 7 7777 777777777777 7777 9 6 0 0 99
consensus : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-T---T---ANAAATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
Reference ( family-1149 ) : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-T---T---ANAAATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
gi|1 : TGTGTTT-TTTTCCTTT-TATAATTGTGAT-TTT-T-T-CGTCATCATC-AT----GTACTTACTGTATT--TATA--ATATG-------ATTC--AATAGTT--TG-TTAAATTGTATAATTAC-------GTTCTTT--TAT-TTTGT---ATAACTT--T-T-G----TG------------TTTATGCTCT----CCTGTTCCATC-GCAGGAAATAAAATAT-C-T-
gi|10 : attgtatgttttgttcttagtttatatgaatgattttatctctataaatgtaagataaccatattacattcataaagcaataattctggcattaaataaacgatcacttacattgtattgtaatattgtataattacatgtagttagttgcaagtgattatatataattatgttgtttttttgtg--ATATG-------AT----TATATTTGGTG-TCAAATCGCA----TAG-------GTTGT-T--CAT-T---T---AAAAATA--TAT-G----TG------------TTTATGCTCT----CCTATATTATA-TGAGGAAATACAATAT-CAT-ATCTTATC--TCGtgtcgtaattcacatagttttgttaaatacacattcagtgtattcatgatt
gi|11 : attgtaatgttagttgtatatctaagttccT-TTTTT-TATATAATTGTC-ACTTAAGCACATACTGCATC--TATA--ATATA-------ATctgtcgcgatgtaa
gi|11 : tatagtAT-T---C---AAAAACG--TAT-A----TG------------TGCATGGTCT----CCTATAACATT-GGAAGAAATAAAATAT-CTT-ATCATATC--TTtcaaaaacgtatatgtgcatggtctcctataacattggaagaaataaaatatcttatcatatcttagcttaccataactcatcagtaatatttt
gi|12 : tatagttttttttatataattgtcacttaagcacatactgcatctataatataTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TAT-GTT--AGATCAGATTGTA----TAT-------ATTCTGT--CAT-T---TTGCATAAATG--TAT-A----CG------------TTAATGCTCT----CCAATACCATT-GGAGGAAATAAAATAagcttaccataactcatcagtaatatttt
gi|13 : ATCGTC-AT----GT-CAT--CGTATT--TATA--CTATA-------GTAT--TACGATT--TG-TTAAATTGTA----TAT-------GTTCTGG--AAT-T---T---GAAAACT--TATAA----TG------------TTTA-----T----CATATACTACT-GGAGGAAATACAATA
gi|14 : TTCTGA--CAT-T---TT--CCAAATG--TTT-A----A---------------TATGCTCT----CCTATACCATT-GGAGGAAATAAAGTATCC-T-ATCTTATC--
gi|15 : a-------ATAA--TATGGTT--TG-TTAAATTATA----CATCGTTTGTGTTCTGT--CAT-T---T---AAAAATG--TAT-A----TG------------TTTATGCTCT----CCTACACcaaatacacaaaagcta
gi|2 : GTTTTCCTTA-T-TAACTGTGAT-TTTTG---CGCCATCGTC-AT----
gi|2 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtgT-T-CCTTGTCGTC-AT----GTACGTACTGTATA--TTTA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------CGTCTGT--CAT-TTTGT---ATAAATG--TAT-A----TGTTTATGCATATATTTATGCTCT----CCTTTACCATT-GGAAGAAcaaagaactatacctcccaatttaaattccttgtcgtcatgtacgtactgtatatttaatataatactatggtttgtcaaattgtatatcgtctgtcattttgtataaatgtatatgtttatgcatatatttatgctctcctttaccattggaagaa
gi|3 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtggttttccttattaactgtgatttttgcgccatcgtcatcaaagaactatacctcccaatttaaaATGCCTTTTTTCCTTT-TGTCATTGTG---TTTTT-T-CGT-ATCATCCAT----GCACATACTGTATT--TATC--ATATA-------CTAT--TATGGTT--TG-TC-AATTATA----CGT-------ATTCGGT--CAT-TTTGT---ATAAATG--TAT-A----TG-------------CTATGATCT----CCTATATCACT-GGGTGGAATAAAACAT-CTT-ATCTTATC--
gi|4 : tgttgttgataattctaaatagtgtgtacaaaatgtttgcataaaattgttttttagtacgttttgatttaaattaATCGGC-AT----GTATATACTGTATT--TATT--ATTTG-------ATAA--TATGGTT--TG-TCAAATTGTA----TAT-------ATTATGG--CAT-T---T---AAAAATG--TAT-A----TG------------ATTATGCTTT----CCTATACTATTAGAAGAAAATAGAATAT-aatcttattaaagttcagttagcattttcaaataatt
gi|5 : aaatatctcatccacggatttaatcaaatgcagatgtaaaatgtttgttgcagaattaagttttgtatgattacatttggtgtttatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttatTAATTGTCTTCCCTTCTGTAATTGTGATATCTTTAT-CGTCATTGTC-A------------CCGTATT--TATA-----TA-------ATAC--TATGATT---G-TTAAAGTGAA----TAT-------TGTCTGA--CGT-T---TTGTATATATG--TAT-A----TG------------TTTATGCTCT----CCTATACTACT-GGAGGAAATAAAATAT-CTT-ATCTTATCATTTGT
gi|6 : tatctcaatattaaatacaaacgtaagcataaaaagttgcgttgtacgtttggtttaatttaatttaagtaatTATGGTTGTTTT--TTT-T-TAATTGTGAC-TTTTT-T-TGCCATTGTC-AT----GTAAATACTGTATT--TGTA--ATATA-------ATAC--TGTTGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAA-T---T---AAAAAAG--TAT-A----TG------------TTAATGCTCT----CCTATACCATT-GGAGGAAATAAAAGAT-A-TAATCCTATC--TTGTgcgtgacatac
gi|7 : ttcatatcatcaaTGAT-TTTT--------A--GTC-AT----GTGCATACTGTATTTATATA--ATATA-------ATAT--TAT-TTT--TG-TGTATTCGGAC---TA----------TCTGT--CATATTG-T---ATAAATA--TAT-ACATGTG------------TTTATACTCT----CCTGT---ATT-TCAGGAAAT-AAATA----T-ATCTTATC--agaaacgta
gi|8 : CTCT-CACAAATGTGAT-TATTT-T-TGTCA--GGC-A------------CTGTGTT--TATAATATATA-------ATACAATATTTTT--TT-TCAAACTGTG----TAT-------ATTCAGTAATAT-TG--T---ATAAATG--TTT-A----TA------------TTAATGCTCA----CTTGTACCGTT-AGAGGAAATAAAATAT-C-TAATCTGATC--aattcaatcattaatattcatgtttgtagtttattaatt
gi|9 : tcccaTATACTTGTTTT---TT-TGT-----------TTTT-T-TGT-ACTGTC-AT----GTACATACTGTACT--TACA--ATATATGATACAATAC--TATGATT--TG-ACAAATCATA----TAT-------GTTCTGT--AAT-T---T---AAAAATGTATAT-A----TG------------TATATGCTCTTTGGCCTATAGCAAT-AGAGGAAATAAAATAT-C-T-aatttaaaggcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CATGTGAAACTGGTTGTTCATGTAGTATACTTAA
Alignments
lowQualScore : 11111111 2222222 111111111111 1
lowQualScore : 1 2 6 5 8 1 0 0 4 666 6 0 3 6666 0 44 44 9999999 44 4 44 3 9999 00000000 33 2 4444444 1 33 2 5555 333333333333 5555 2 3 6 8 66
lowQualScore : . . . . . . . . . ... . . . .... . .. .. ....... .. . .. . .... ........ .. . ....... . .. . .... ............ .... . . . . ..
lowQualScore : 0 5 7 7 9 4 3 1 4 333 6 4 1 5555 3 66 22 3333333 22 0 22 1 6666 77777777 99 7 3333333 0 77 7 7777 777777777777 7777 9 6 0 0 99
consensus : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-T---T---ANAAATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
Reference ( family-1149 ) : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-T---T---ANAAATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
gi|1 : TGTGTTT-TTTTCCTTT-TATAATTGTGAT-TTT-T-T-CGTCATCATC-AT----GTACTTACTGTATT--TATA--ATATG-------ATTC--AATAGTT--TG-TTAAATTGTATAATTAC-------GTTCTTT--TAT-TTTGT---ATAACTT--T-T-G----TG------------TTTATGCTCT----CCTGTTCCATC-GCAGGAAATAAAATAT-C-T-
gi|10 : attgtatgttttgttcttagtttatatgaatgattttatctctataaatgtaagataaccatattacattcataaagcaataattctggcattaaataaacgatcacttacattgtattgtaatattgtataattacatgtagttagttgcaagtgattatatataattatgttgtttttttgtg--ATATG-------AT----TATATTTGGTG-TCAAATCGCA----TAG-------GTTGT-T--CAT-T---T---AAAAATA--TAT-G----TG------------TTTATGCTCT----CCTATATTATA-TGAGGAAATACAATAT-CAT-ATCTTATC--TCGtgtcgtaattcacatagttttgttaaatacacattcagtgtattcatgatt
gi|11 : attgtaatgttagttgtatatctaagttccT-TTTTT-TATATAATTGTC-ACTTAAGCACATACTGCATC--TATA--ATATA-------ATctgtcgcgatgtaa
gi|11 : tatagtAT-T---C---AAAAACG--TAT-A----TG------------TGCATGGTCT----CCTATAACATT-GGAAGAAATAAAATAT-CTT-ATCATATC--TTtcaaaaacgtatatgtgcatggtctcctataacattggaagaaataaaatatcttatcatatcttagcttaccataactcatcagtaatatttt
gi|12 : tatagttttttttatataattgtcacttaagcacatactgcatctataatataTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TAT-GTT--AGATCAGATTGTA----TAT-------ATTCTGT--CAT-T---TTGCATAAATG--TAT-A----CG------------TTAATGCTCT----CCAATACCATT-GGAGGAAATAAAATAagcttaccataactcatcagtaatatttt
gi|13 : ATCGTC-AT----GT-CAT--CGTATT--TATA--CTATA-------GTAT--TACGATT--TG-TTAAATTGTA----TAT-------GTTCTGG--AAT-T---T---GAAAACT--TATAA----TG------------TTTA-----T----CATATACTACT-GGAGGAAATACAATA
gi|14 : TTCTGA--CAT-T---TT--CCAAATG--TTT-A----A---------------TATGCTCT----CCTATACCATT-GGAGGAAATAAAGTATCC-T-ATCTTATC--
gi|15 : a-------ATAA--TATGGTT--TG-TTAAATTATA----CATCGTTTGTGTTCTGT--CAT-T---T---AAAAATG--TAT-A----TG------------TTTATGCTCT----CCTACACcaaatacacaaaagcta
gi|2 : GTTTTCCTTA-T-TAACTGTGAT-TTTTG---CGCCATCGTC-AT----
gi|2 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtgT-T-CCTTGTCGTC-AT----GTACGTACTGTATA--TTTA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------CGTCTGT--CAT-TTTGT---ATAAATG--TAT-A----TGTTTATGCATATATTTATGCTCT----CCTTTACCATT-GGAAGAAcaaagaactatacctcccaatttaaattccttgtcgtcatgtacgtactgtatatttaatataatactatggtttgtcaaattgtatatcgtctgtcattttgtataaatgtatatgtttatgcatatatttatgctctcctttaccattggaagaa
gi|3 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtggttttccttattaactgtgatttttgcgccatcgtcatcaaagaactatacctcccaatttaaaATGCCTTTTTTCCTTT-TGTCATTGTG---TTTTT-T-CGT-ATCATCCAT----GCACATACTGTATT--TATC--ATATA-------CTAT--TATGGTT--TG-TC-AATTATA----CGT-------ATTCGGT--CAT-TTTGT---ATAAATG--TAT-A----TG-------------CTATGATCT----CCTATATCACT-GGGTGGAATAAAACAT-CTT-ATCTTATC--
gi|4 : tgttgttgataattctaaatagtgtgtacaaaatgtttgcataaaattgttttttagtacgttttgatttaaattaATCGGC-AT----GTATATACTGTATT--TATT--ATTTG-------ATAA--TATGGTT--TG-TCAAATTGTA----TAT-------ATTATGG--CAT-T---T---AAAAATG--TAT-A----TG------------ATTATGCTTT----CCTATACTATTAGAAGAAAATAGAATAT-aatcttattaaagttcagttagcattttcaaataatt
gi|5 : aaatatctcatccacggatttaatcaaatgcagatgtaaaatgtttgttgcagaattaagttttgtatgattacatttggtgtttatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttatTAATTGTCTTCCCTTCTGTAATTGTGATATCTTTAT-CGTCATTGTC-A------------CCGTATT--TATA-----TA-------ATAC--TATGATT---G-TTAAAGTGAA----TAT-------TGTCTGA--CGT-T---TTGTATATATG--TAT-A----TG------------TTTATGCTCT----CCTATACTACT-GGAGGAAATAAAATAT-CTT-ATCTTATCATTTGT
gi|6 : tatctcaatattaaatacaaacgtaagcataaaaagttgcgttgtacgtttggtttaatttaatttaagtaatTATGGTTGTTTT--TTT-T-TAATTGTGAC-TTTTT-T-TGCCATTGTC-AT----GTAAATACTGTATT--TGTA--ATATA-------ATAC--TGTTGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAA-T---T---AAAAAAG--TAT-A----TG------------TTAATGCTCT----CCTATACCATT-GGAGGAAATAAAAGAT-A-TAATCCTATC--TTGTgcgtgacatac
gi|7 : ttcatatcatcaaTGAT-TTTT--------A--GTC-AT----GTGCATACTGTATTTATATA--ATATA-------ATAT--TAT-TTT--TG-TGTATTCGGAC---TA----------TCTGT--CATATTG-T---ATAAATA--TAT-ACATGTG------------TTTATACTCT----CCTGT---ATT-TCAGGAAAT-AAATA----T-ATCTTATC--agaaacgta
gi|8 : CTCT-CACAAATGTGAT-TATTT-T-TGTCA--GGC-A------------CTGTGTT--TATAATATATA-------ATACAATATTTTT--TT-TCAAACTGTG----TAT-------ATTCAGTAATAT-TG--T---ATAAATG--TTT-A----TA------------TTAATGCTCA----CTTGTACCGTT-AGAGGAAATAAAATAT-C-TAATCTGATC--aattcaatcattaatattcatgtttgtagtttattaatt
gi|9 : tcccaTATACTTGTTTT---TT-TGT-----------TTTT-T-TGT-ACTGTC-AT----GTACATACTGTACT--TACA--ATATATGATACAATAC--TATGATT--TG-ACAAATCATA----TAT-------GTTCTGT--AAT-T---T---AAAAATGTATAT-A----TG------------TATATGCTCTTTGGCCTATAGCAAT-AGAGGAAATAAAATAT-C-T-aatttaaaggcc
blockSeqs : C G C C G A A TA A C TTAA TA AT TGATACA AA A GG A C CGTTTGTG AA A TTGC A TA A CATG TTTATGCATATA TTGG A C A A AT
blockSeqs : A T C . G C . AT C . . . . . . G . . . G . . TTGT A . . . . . . . T A .
blockSeqs : G G C . A A . T T . . . . . . G . . . A . . TTGT T . . . . . . . T . .
blockSeqs : C G . . G A . T C . . . . . . G . . . G . . TTGT A . . . . . . . T . .
blockSeqs : G . . . A . T C . . . . . . G . . . C . . TGT C . . . . . . . . . .
blockSeqs : . . . . T C . . . . . . G . . . A . . TT A . . . . . . . . . .
blockSeqs : . T . . . . . . . G . . . A . . GT T . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . T . . T T . . . . . . . . .
blockSeqs : . . . . . . . . T . . . G . . C A . . . . . . . . .
blockSeqs : . . . . . . G . . . A . . T T . . . . . . .
blockSeqs : . . . . . . . . . . G . . T A . . . . . .
blockSeqs : . . . . . . . . . . . . T T . . . . . .
blockSeqs : . . . T T . . . . . .
blockSeqs : . T A . . . . .
blockSeqCons : **** TT*****
originalCons : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-T---T---ANAAATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
finalCons : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATA--ATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-TTT-----ANAAATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CATGTGAAACTGGTTGTTCATGTAGTATACTTAA
Alignments
lowQualScore : 1111111 11111111 11111 111111111111 1
lowQualScore : 1 2 6 5 8 1 0 0 4 666 6 0 3 6666 0 44 3333333 44 4 44 3 9999 00000000 33 44 77777 1 2 33 2 5555 333333333333 5555 2 3 6 8 66
lowQualScore : . . . . . . . . . ... . . . .... . .. ....... .. . .. . .... ........ .. .. ..... . . .. . .... ............ .... . . . . ..
lowQualScore : 0 5 7 7 9 4 3 1 4 333 6 4 1 5555 3 66 2222222 22 0 22 1 6666 77777777 99 22 55555 0 7 77 7 7777 777777777777 7777 9 6 0 0 99
consensus : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATAATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-TT--T--ANA-AATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
Reference ( family-1149 ) : NNNNNNNNNNNNNTATGNTTGTTTTCCTTT-TGTAATTGTGAT-TTTTT-T-CGTCATCGTC-AT----GTACATACTGTATT--TATAATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CAT-TT--T--ANA-AATG--TAT-A----TG------------TTTATGCTCT----CCTATACCATT-GGAGGAAATAAAATAT-C-T-ATCTTATC--TTGT
gi|1 : TGTGTTT-TTTTCCTTT-TATAATTGTGAT-TTT-T-T-CGTCATCATC-AT----GTACTTACTGTATT--TATAATATG-------ATTC--AATAGTT--TG-TTAAATTGTATAATTAC-------GTTCTTT--TAT-TT--T--GTATAACT--TTT-G----TG------------TTTATGCTCT----CCTGTTCCATC-GCAGGAAATAAAATAT-C-T-
gi|10 : attgtatgttttgttcttagtttatatgaatgattttatctctataaatgtaagataaccatattacattcataaagcaataattctggcattaaataaacgatcacttacattgtattgtaatattgtataattacatgtagttagttgcaagtgattatatataattatgttgtttttttgtgATATG-------AT----TATATTTGGTG-TCAAATCGCA----TAG-------GTTGT-T--CAT-TT-----AAA-AATA--TAT-G----TG------------TTTATGCTCT----CCTATATTATA-TGAGGAAATACAATAT-CAT-ATCTTATC--TCGtgtcgtaattcacatagttttgttaaatacacattcagtgtattcatgatt
gi|11 : attgtaatgttagttgtatatctaagttccT-TTTTT-TATATAATTGTC-ACTTAAGCACATACTGCATC--TATAATATA-------ATctgtcgcgatgtaa
gi|11 : tatagt-TT--C--AAA-AACG--TAT-A----TG------------TGCATGGTCT----CCTATAACATT-GGAAGAAATAAAATAT-CTT-ATCATATC--TTtcaaaaacgtatatgtgcatggtctcctataacattggaagaaataaaatatcttatcatatcttagcttaccataactcatcagtaatatttt
gi|12 : tatagttttttttatataattgtcacttaagcacatactgcatctataatataaTC-AT----GTACATACTGTATT--TATAATATA-------ATAC--TAT-GTT--AGATCAGATTGTA----TAT-------ATTCTGT--CAT-TT--TGCATA-AATG--TAT-A----CG------------TTAATGCTCT----CCAATACCATT-GGAGGAAATAAAATAagcttaccataactcatcagtaatatttt
gi|13 : ATCGTC-AT----GT-CAT--CGTATT--TATACTATA-------GTAT--TACGATT--TG-TTAAATTGTA----TAT-------GTTCTGG--AAT-TT--G--AAA-ACT---TATAA----TG------------TTTA-----T----CATATACTACT-GGAGGAAATACAATA
gi|14 : TTCTGA--CAT-TT--T--CCA-AATG--TTT-A----A---------------TATGCTCT----CCTATACCATT-GGAGGAAATAAAGTATCC-T-ATCTTATC--
gi|15 : a-------ATAA--TATGGTT--TG-TTAAATTATA----CATCGTTTGTGTTCTGT--CAT-TT-----AAA-AATG--TAT-A----TG------------TTTATGCTCT----CCTACACcaaatacacaaaagcta
gi|2 : GTTTTCCTTA-T-TAACTGTGAT-TTTTG---CGCCATCGTC-AT----
gi|2 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtgT-T-CCTTGTCGTC-AT----GTACGTACTGTATA--TTTAATATA-------ATAC--TATGGTT--TG-TCAAATTGTA----TAT-------CGTCTGT--CAT-TTTGT--ATA-AATG--TAT-A----TGTTTATGCATATATTTATGCTCT----CCTTTACCATT-GGAAGAAcaaagaactatacctcccaatttaaattccttgtcgtcatgtacgtactgtatatttaatataatactatggtttgtcaaattgtatatcgtctgtcattttgtataaatgtatatgtttatgcatatatttatgctctcctttaccattggaagaa
gi|3 : attgtatgttttgttccaatttaatttaaattaatgattttatctctaaaatacaaaagtaagataactaaattacatactggcatttaataaatgctaacttgatttaaaattagttgcataattaagtggcaagcaattatatttggtgattttgttgtggttttccttattaactgtgatttttgcgccatcgtcatcaaagaactatacctcccaatttaaaATGCCTTTTTTCCTTT-TGTCATTGTG---TTTTT-T-CGT-ATCATCCAT----GCACATACTGTATT--TATCATATA-------CTAT--TATGGTT--TG-TC-AATTATA----CGT-------ATTCGGT--CAT-TTTGT--ATA-AATG--TAT-A----TG-------------CTATGATCT----CCTATATCACT-GGGTGGAATAAAACAT-CTT-ATCTTATC--
gi|4 : tgttgttgataattctaaatagtgtgtacaaaatgtttgcataaaattgttttttagtacgttttgatttaaattaATCGGC-AT----GTATATACTGTATT--TATTATTTG-------ATAA--TATGGTT--TG-TCAAATTGTA----TAT-------ATTATGG--CA--TT--T--AAA-AATG--TAT-A----TG------------ATTATGCTTT----CCTATACTATTAGAAGAAAATAGAATAT-aatcttattaaagttcagttagcattttcaaataatt
gi|5 : aaatatctcatccacggatttaatcaaatgcagatgtaaaatgtttgttgcagaattaagttttgtatgattacatttggtgtttatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttatTAATTGTCTTCCCTTCTGTAATTGTGATATCTTTAT-CGTCATTGTC-A------------CCGTATT--TATA---TA-------ATAC--TATGATT---G-TTAAAGTGAA----TAT-------TGTCTGA--CGT-TT--TGTATA-TATG--TAT-A----TG------------TTTATGCTCT----CCTATACTACT-GGAGGAAATAAAATAT-CTT-ATCTTATCATTTGT
gi|6 : tatctcaatattaaatacaaacgtaagcataaaaagttgcgttgtacgtttggtttaatttaatttaagtaatTATGGTTGTTTT--TTT-T-TAATTGTGAC-TTTTT-T-TGCCATTGTC-AT----GTAAATACTGTATT--TGTAATATA-------ATAC--TGTTGTT--TG-TCAAATTGTA----TAT-------GTTCTGT--CA--AT--T--AAA-AAAG--TAT-A----TG------------TTAATGCTCT----CCTATACCATT-GGAGGAAATAAAAGAT-A-TAATCCTATC--TTGTgcgtgacatac
gi|7 : ttcatatcatcaaTGAT-TTTT--------A--GTC-AT----GTGCATACTGTATTTATATAATATA-------ATAT--TAT-TTT--TG-TGTATTCGGAC---TA----------TCTGT--CATATTG-T--ATA-AATA--TAT-ACATGTG------------TTTATACTCT----CCTGT---ATT-TCAGGAAAT-AAATA----T-ATCTTATC--agaaacgta
gi|8 : CTCT-CACAAATGTGAT-TATTT-T-TGTCA--GGC-A------------CTGTGTT--TATAATATATA-----ATACAATATTTTT--TT-TCAAACTGTG----TAT-------ATTCAGTAATAT-TG--T--ATA-AATG--TTT-A----TA------------TTAATGCTCA----CTTGTACCGTT-AGAGGAAATAAAATAT-C-TAATCTGATC--aattcaatcattaatattcatgtttgtagtttattaatt
gi|9 : tcccaTATACTTGTTTT---TT-TGT-----------TTTT-T-TGT-ACTGTC-AT----GTACATACTGTACT--TACAATATATGATACAATAC--TATGATT--TG-ACAAATCATA----TAT-------GTTCTGT--AA--TT--T--AAA-AATGTATAT-A----TG------------TATATGCTCTTTGGCCTATAGCAAT-AGAGGAAATAAAATAT-C-T-aatttaaaggcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CATGTGAAACTGGTTGTTCATGTAGTATACTTAA