lowQualScore : 11111 111111 1 11 3333333 22222222 11 2222222222222222222222222 444444444444444444444 11111111111111 111
lowQualScore : 44444 3 77 5 444444 5 888 9999 1 3 66 7777 1 0 4444444 3 7 3 1 6 44444444 4 11 44 7777777777777777777777777 77 777 444 0 66666 444444444444444444444 55555555555555 666 555
lowQualScore : ..... . .. . ...... . ... .... . . .. .... . . ....... . . . . . ........ . .. .. ......................... .. ... ... . ..... ..................... .............. ... ...
lowQualScore : 88888 0 99 4 444444 0 888 4444 2 6 77 1111 2 3 6666666 6 3 6 1 7 22222222 1 22 22 7777777777777777777777777 99 555 777 8 77777 333333333333333333333 77777777777777 999 000
consensus : TCCTCAA--ANAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGT----GAAGATAATAATAATGA-AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCGGGGGGG--GG--GGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA---------------------CA--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
Reference ( gi|1 ) : TCCTCAA--AGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGT----GAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTGGGGGGG--GG--GGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA---------------------CA--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
gi|3 : TCCTCAA--AGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGT----GAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTGGGGGGG--GG--GGG-G-----------------------GGGAGGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA---------------------CA--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTT
gi|4 : TCCTCAA--ATTAGTCAATTTTGTAAATGTATATAATACTTTATAATTGCATA------TATAT-TACTT---GATCTCTGTTAA----GAATGGGGAGAATTAATACTAAAA-AAGGA---AGGAAAGGT----GAA-----------TGATAATAAAAA-A-TA-TTGGGGATAGGGTG--------GGGGTGTGGGGGT-GG--GGGTG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----CTTTA---------------------CA--------------GTCCACATCCAA----G--ATTTTT---TTTTTTa
gi|5 : TCCTCAA--ATTAGTCAATTTTGTAAATGTATA--ATACTTTATAGTTGTATATACATGTATAT-TAATT---GATCTCTATTAAGAATGAATGGGGAGAATTAATAATAAAA-AA--AGGAAAGAAAGGT----GAAGATAATAATAAT-------AAAA-A-TA-TTGGGGA-------------------TGGGGGGG--GG----------------------------------TG-CAAAAGAGGTTGAAGCAAATATCA--A---AATC-----ATATA---------------------CA--------------GTCCACACCCAAGTT-----TTTTTGGGTTTTTTTA
gi|9 : TCCTCAA--AGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAAAAAAAAGGAAGGTGGAGGAAGGGGA-AATGGAGAAAGGAGGGA-G-GG-GGGGGGGGGGGGGG--------GGGGGGGGGGGG--GG--GGG-G-----------------------GT--TGCCAAAAGAGG
gi|6 : TCTTCAA--TTAAT-CAGTTTTGTAAATTTATA--AAACCTTGTAACTATATA------TA-----ACTT---GGTCTGTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGA--AAAGAAAAGT----GAAGATAA---------------AAA-A-TA-TTGGGGATAGGGTG--------GACCCGGAGGGG--TG--GGG-G------------------------T--TACCAAAGGATGTTGAAGCAAATATCA--C---CAAC-----ATATA---------------------CA--------------GTCTACATT---GTT----GTTTTT---TTTT
gi|13 : TCTTCAATTAG---TCAGTTTTGTAA-------------TTTATAATTATA-A------TATAT-TACTT---GATCTCTACTAA----GAATGGGGAGAATTAATAATAAAA-AAA-AGAAAAGAAAAGT----GAAGATAATAATAAc
gi|7 : TAAATGTAAA--ATACTTTATAG----ATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-CAAGA--AAAGAAAGGT----GAAGATAATAATAAT---AATAAAAATA-TA-TTGGGAATATGGTG--------GGCCCAGGGGGC--GG--GGG-A-----------------------GT--TTCCAAAAGGGGTTGAAGCACATATCA--A---CAAC-----ATATT---------------------CA--------------AGCCACATCCACGTTTG---TTTGT---TGTTTTa
gi|2 : TTTGTAAAAGTATA------TTTATGTATTTTCCGATCTCTATT-A----GAATGGGGAGAATTGATAAAAAAAGAAAGAAAAGAGAAAAAT----GAAGGTAATAAT----ATAA-AAAAA-A-TA-TTGTGGATATGGTA--------GGCACAGGGGGAT-GG--GGC-A-----------------------GTGATGCCATAGGAGGTTGAAGCATATATCAACA---AGATTTACGATAAA---------------------CAACATTTAACAATCTATCCATATCCAAGTTTG---TTTTG---TTT
gi|8 : ttcttcaatttgtctgtTCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGA--AAAGAAAGGT----GAAGATAATAATAATAA----AAAAA-A-TATTTGGGGGGGAGGGG--------GGGGCGGGGGGG--GG--GGG-GGGGGGGGGGGAGGGCGTGGGGTAGT--TACCAAAAGAGGTTGAAGCAAATATCA--A---ACAT-----ATATA---------------------CA--------------GTCCACATCCAAGTTTA--AGTTTG---TTTa
gi|11 : AAA-AAAGACAAGAGAAAAAT----GAAGATAATAATAA----ACCAAAAA-ACTA-TTGGAGATTTGGTGGACCCAGTGGGGTGGGTGGGATGG--GGG-T-----------------------GT--TGCCATAAAAAATT-AAGCAAATATCA--A---CAAC-----ATTTACAATTAACAACATTTAAAAATCA--------------GTCCGCATCCAAGTTTG---TTTTgctg
gi|10 : tAAA-AAAGACAAGAGAAAAAT----GAAGATAATAATAA----ACCAAAAA-ACTA-TTGGGGATATGTTGGACCCAGTGGGGTGGGTGGG--AAATGGG-C-----------------------GT--TGCCATAAAA--T----GCAAATATCA--A---CGAC-----ATTTACAATTAACAACATTTAAAAT-CA--------------GTCCGCATCCAACTTTG---TTTGT---TTTTTT
gi|12 : AAAGGT----GAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGG--------------AGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA---------------------CA--------------GTCCACATCCAAGTTT----TTTTT---
gi|14 : GGGGGGGGGGGG--------GGGGGGGGGGGG--GG--GGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA---------------------CA--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTa
gi|15 : gggggg--GGG-G-----------------------AT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA---------------------CA--------------GTTCACATCCAAGTTTG--TTTTGT---TTTTTTTaaa
gi|16 : -----------------------GT--TGCCAAAACAGGTTGAAGCAAATATCA--A---ACAC-----ATATA---------------------CA--------------GTCCACATCCAAGTTTG----TTTC---TTTTTTTA
gi|17 : ttCAAAAGAGGTTGAAGCAAATATCA--GTACAG-C-----ATATA---------------------CA--------------GTCCACATCCAAGTCTGTTATTTTT---a
gi|18 : CAAATATCA--A---AGAC-----ATATA---------------------CA--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTaaaaa
Alignments
lowQualScore : 111111 22222222 22222222 1111111111111 22222222222222222222222 333333333333333333333333333333333333333333333333333333333 111
lowQualScore : 1 5 66 3 222222 4 777 8888 3 22 5 99999999 3 6 3 22 22222222 5 3 8888888888888 33 44444444444444444444444 77 33 444 0 66666 777777777777777777777777777777777777777777777777777777777 555 444
lowQualScore : . . .. . ...... . ... .... . .. . ........ . . . .. ........ . . ............. .. ....................... .. .. ... . ..... ......................................................... ... ...
lowQualScore : 0 0 99 7 888888 4 888 5555 3 99 2 88888888 3 7 3 33 33333333 8 1 9999999999999 99 77777777777777777777777 33 44 444 1 22222 222222222222222222222222222222222222222222222222222222222 333 777
consensus : TCCTCAAATAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGA-AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
Reference ( family-1122 ) : TCCTCAAANAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGA-AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
gi|1 : TCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
gi|10 : AAA-AAAGACAAGAGAAAAATGAAGATAATAATA---A-ACCAAAAA-ACTA-TTGGGGATATGTTGGACCCAGTGGGGTG-GGTGG----------G--AAATGGGC-----------------------GT--TGCCATAAAA--T----GCAAATATCA--A---CGAC-----ATTTACAATTAACAACATTTAAAATC---------------------A--------------GTCCGCATCCAACTTTG---TTTGT---TTTTTT
gi|11 : AAA-AAAGACAAGAGAAAAATGAAGATAATAATA---A-ACCAAAAA-ACTA-TTGGAGATTTGGTGGACCCAGTGGGGTG-GGTGG----------GATGG--GGGT-----------------------GT--TGCCATAAAAAATT-AAGCAAATATCA--A---CAAC-----ATTTA--------------------CAATTAACAACATTTAAAAATCA--------------GTCCGCATCCAAGTTTG---TTTT
gi|12 : tAAAGGTGAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGG-------------------------AGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT----TTTTT---
gi|13 : TCTTCAATTAGT-CAGTTTTGTAA-------------TTTATAATTATA-A------TATAT-TACTT---GATCTCTACTAA----GAATGGGGAGAATTAATAATAAAA-AAA-AGAAAAGAAAAGTGAAGATAATAATAAa
gi|14 : GGGGGGGGGGGG--------GGGGGG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTa
gi|15 : gggggg--GGGG-----------------------AT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA--------------------C---------------------A--------------GTTCACATCCAAGTTTG--TTTTGT---TTTTTTTaaa
gi|16 : -----------------------GT--TGCCAAAACAGGTTGAAGCAAATATCA--A---ACAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG----TTTC---TTTTTTTA
gi|17 : ttCAAAAGAGGTTGAAGCAAATATCA--GTACAG-C-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTCTGTTATTTTT---a
gi|18 : CAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTaaaaa
gi|2 : TTTGTAAAAGTATA------TTTATGTATTTTCCGATCTCTATT-A----GAATGGGGAGAATTGATAAAAAAAGAAAGAAAAGAGAAAAATGAAGGTAATAAT-ATAA----AAAAA-A-TA-TTGTGGATATGGTA--------GGCACA-GGGGG----------AT-GG--GGCA-----------------------GTGATGCCATAGGAGGTTGAAGCATATATCAACA---AGATTTACGATAAA--------------------C---------------------AACATTTAACAATCTATCCATATCCAAGTTTG---TTTTG---TTTaaa
gi|3 : ttcttcaatttgtctgtTCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTG-GGGGG----------G--GG--GGGG-----------------------GGGAGGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTa
gi|4 : TCCTCAAATTAGTCAATTTTGTAAATGTATATAATACTTTATAATTGCATA------TATAT-TACTT---GATCTCTGTTAA----GAATGGGGAGAATTAATACTAAAA-A---AGGAAGGAAAGGTGA--ATGAT---------AATAAAAA-A-TA-TTGGGGATAGGGTG--------GGGGTGTGGGGGT---------G--GG--GGTG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----CTTTA--------------------C---------------------A--------------GTCCACATCCAA----G--ATTTTT---TTTTTTa
gi|5 : TCCTCAAATTAGTCAATTTTGTAAATGTATA--ATACTTTATAGTTGTATATACATGTATAT-TAATT---GATCTCTATTAAGAATGAATGGGGAGAATTAATAATAAAA-AA--AGGAAAGAAAGGTGAAGATAATAATAAT-------AAAA-A-TA-TTGGGGAT-------------------G-GGGGG----------G--GG---------------------------------TG-CAAAAGAGGTTGAAGCAAATATCA--A---AATC-----ATATA--------------------C---------------------A--------------GTCCACACCCAAGTT-----TTTTTGGGTTTTTTTA
gi|6 : TCTTCAATTAAT-CAGTTTTGTAAATTTATA--AAACCTTGTAACTATATA------TA-----ACTT---GGTCTGTATTAA----GAATGGGGAGAATTAATAATAAAA-AA--AGAAAAGAAAAGTGAAG---------------ATAAAAA-A-TA-TTGGGGATAGGGT---------GGACCC-GGAGG----------G--GT--GGGG-----------------------GT--TACCAAAGGATGTTGAAGCAAATATCA--C---CAAC-----ATATA--------------------C---------------------A--------------GTCTACATT---GTT----GTTTTT---TTTT
gi|7 : TAAATGTAAA--ATACTTTATAG----ATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-CAAGA--AAAGAAAGGTGAAGATAATAATAAT---AATAAAAATA-TA-TTGGGAATATGGTG--------GGCCCA-GGGGG----------C--GG--GGGA-----------------------GT--TTCCAAAAGGGGTTGAAGCACATATCA--A---CAAC-----ATATT--------------------C---------------------A--------------AGCCACATCCACGTTTG---TTTGT---TGTTTTc
gi|8 : TCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGA--AAAGAAAGGTGAAGATAATAATAATAA----AAAAA-A-TATTTGGGGGGGAGGGG--------GGGGCG-GGGGG----------G--GG--GGGGGGGGGGGGGGAGGGCGTGGGGTAGT--TACCAAAAGAGGTTGAAGCAAATATCA--A---ACAT-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTA--AGTTTG---TTT
gi|9 : TCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAAAAAAAAGGAAGGTGGAGGAAGGGGAAATGG-AG-AAAGG-A-------GGGAGGGGGGG--------GGGGGG-GGGGGGGGGGGGGGGG--GG--GGGG-----------------------GT--TGCCAAAAGAGGgctg
Alignments
lowQualScore : 111111 22222222 22222222 1111111111111 22222222222222222222222 333333333333333333333333333333333333333333333333333333333 111
lowQualScore : 1 5 66 3 222222 4 777 8888 3 22 5 99999999 3 6 3 22 22222222 5 3 8888888888888 33 44444444444444444444444 77 33 444 0 66666 777777777777777777777777777777777777777777777777777777777 555 444
lowQualScore : . . .. . ...... . ... .... . .. . ........ . . . .. ........ . . ............. .. ....................... .. .. ... . ..... ......................................................... ... ...
lowQualScore : 3 0 99 7 888888 4 888 5555 3 99 2 88888888 3 7 3 33 33333333 8 1 9999999999999 99 77777777777777777777777 33 44 444 1 22222 222222222222222222222222222222222222222222222222222222222 333 777
consensus : TCCTCAAATAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGA-AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
Reference ( family-1122 ) : TCCTCAAATAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGA-AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
gi|1 : TCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
gi|10 : AAA-AAAGACAAGAGAAAAATGAAGATAATAATA---A-ACCAAAAA-ACTA-TTGGGGATATGTTGGACCCAGTGGGGTG-GGTGG----------G--AAATGGGC-----------------------GT--TGCCATAAAA--T----GCAAATATCA--A---CGAC-----ATTTACAATTAACAACATTTAAAATC---------------------A--------------GTCCGCATCCAACTTTG---TTTGT---TTTTTT
gi|11 : AAA-AAAGACAAGAGAAAAATGAAGATAATAATA---A-ACCAAAAA-ACTA-TTGGAGATTTGGTGGACCCAGTGGGGTG-GGTGG----------GATGG--GGGT-----------------------GT--TGCCATAAAAAATT-AAGCAAATATCA--A---CAAC-----ATTTA--------------------CAATTAACAACATTTAAAAATCA--------------GTCCGCATCCAAGTTTG---TTTT
gi|12 : tAAAGGTGAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGG-------------------------AGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT----TTTTT---
gi|13 : TCTTCAATTAGT-CAGTTTTGTAA-------------TTTATAATTATA-A------TATAT-TACTT---GATCTCTACTAA----GAATGGGGAGAATTAATAATAAAA-AAA-AGAAAAGAAAAGTGAAGATAATAATAAa
gi|14 : GGGGGGGGGGGG--------GGGGGG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTa
gi|15 : gggggg--GGGG-----------------------AT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA--------------------C---------------------A--------------GTTCACATCCAAGTTTG--TTTTGT---TTTTTTTaaa
gi|16 : -----------------------GT--TGCCAAAACAGGTTGAAGCAAATATCA--A---ACAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG----TTTC---TTTTTTTA
gi|17 : ttCAAAAGAGGTTGAAGCAAATATCA--GTACAG-C-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTCTGTTATTTTT---a
gi|18 : CAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTaaaaa
gi|2 : TTTGTAAAAGTATA------TTTATGTATTTTCCGATCTCTATT-A----GAATGGGGAGAATTGATAAAAAAAGAAAGAAAAGAGAAAAATGAAGGTAATAAT-ATAA----AAAAA-A-TA-TTGTGGATATGGTA--------GGCACA-GGGGG----------AT-GG--GGCA-----------------------GTGATGCCATAGGAGGTTGAAGCATATATCAACA---AGATTTACGATAAA--------------------C---------------------AACATTTAACAATCTATCCATATCCAAGTTTG---TTTTG---TTTaaa
gi|3 : ttcttcaatttgtctgtTCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTG-GGGGG----------G--GG--GGGG-----------------------GGGAGGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTa
gi|4 : TCCTCAAATTAGTCAATTTTGTAAATGTATATAATACTTTATAATTGCATA------TATAT-TACTT---GATCTCTGTTAA----GAATGGGGAGAATTAATACTAAAA-A---AGGAAGGAAAGGTGA--ATGAT---------AATAAAAA-A-TA-TTGGGGATAGGGTG--------GGGGTGTGGGGGT---------G--GG--GGTG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----CTTTA--------------------C---------------------A--------------GTCCACATCCAA----G--ATTTTT---TTTTTTa
gi|5 : TCCTCAAATTAGTCAATTTTGTAAATGTATA--ATACTTTATAGTTGTATATACATGTATAT-TAATT---GATCTCTATTAAGAATGAATGGGGAGAATTAATAATAAAA-AA--AGGAAAGAAAGGTGAAGATAATAATAAT-------AAAA-A-TA-TTGGGGAT-------------------G-GGGGG----------G--GG---------------------------------TG-CAAAAGAGGTTGAAGCAAATATCA--A---AATC-----ATATA--------------------C---------------------A--------------GTCCACACCCAAGTT-----TTTTTGGGTTTTTTTA
gi|6 : TCTTCAATTAAT-CAGTTTTGTAAATTTATA--AAACCTTGTAACTATATA------TA-----ACTT---GGTCTGTATTAA----GAATGGGGAGAATTAATAATAAAA-AA--AGAAAAGAAAAGTGAAG---------------ATAAAAA-A-TA-TTGGGGATAGGGT---------GGACCC-GGAGG----------G--GT--GGGG-----------------------GT--TACCAAAGGATGTTGAAGCAAATATCA--C---CAAC-----ATATA--------------------C---------------------A--------------GTCTACATT---GTT----GTTTTT---TTTT
gi|7 : TAAATGTAAA--ATACTTTATAG----ATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-CAAGA--AAAGAAAGGTGAAGATAATAATAAT---AATAAAAATA-TA-TTGGGAATATGGTG--------GGCCCA-GGGGG----------C--GG--GGGA-----------------------GT--TTCCAAAAGGGGTTGAAGCACATATCA--A---CAAC-----ATATT--------------------C---------------------A--------------AGCCACATCCACGTTTG---TTTGT---TGTTTTc
gi|8 : TCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGA--AAAGAAAGGTGAAGATAATAATAATAA----AAAAA-A-TATTTGGGGGGGAGGGG--------GGGGCG-GGGGG----------G--GG--GGGGGGGGGGGGGGAGGGCGTGGGGTAGT--TACCAAAAGAGGTTGAAGCAAATATCA--A---ACAT-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTA--AGTTTG---TTT
gi|9 : TCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATAAATAATAAAA-AAAAAAAAAAGGAAGGTGGAGGAAGGGGAAATGG-AG-AAAGG-A-------GGGAGGGGGGG--------GGGGGG-GGGGGGGGGGGGGGGG--GG--GGGG-----------------------GT--TGCCAAAAGAGGgctg
blockSeqs : T T TA T TACATG G TCC GAAT G AG C ATGATAAT T C T AT GACCCAGT T T GGGGGGGGGGG AT GGGGGGGGGGAGGGCGTGGGGTA GA AC TAC TTACG CAATTAACAACATTTAAAAATCA TTA GGG
blockSeqs : G T . A . . . . . AG C ATGATAAT . C . TT GACCCAGT T . GAT . . GA . . . CAATTAACAACATTTAAAATCA A .
blockSeqs : T T . C . . . . . AG G ATGGAG . . . AA . G . AT . . . . . . CAACATTTAACAATCT T .
blockSeqs : T T . T . . . . . AG A ATAAT . . . GG . C . TG . . . . . . CA A .
blockSeqs : T . . T . . . . . AG G AACC . . . AT . T . G . . . . . . CA A .
blockSeqs : G . . C . . . . . AG G AACC . . . AA . T . G . . . . . . CA A .
blockSeqs : . C . . . . . AA G ATAA . . . AG . C . G . . . . . . CA G .
blockSeqs : . . . . . . A G ATAA . . . AG . C . G . . . . . . CA A .
blockSeqs : . . . A AAT . . . AT . C . G . . . . . . CA . .
blockSeqs : . . . AT . . . GA . G . C . . . . . . CA . .
blockSeqs : . . . AT . . . GG . . . G . . . . . . CA . .
blockSeqs : . . . . . . . . . . . CA . .
blockSeqs : . . . . . . CA . .
blockSeqs : . . . . . CA . .
blockSeqs : . . . CA .
blockSeqCons : ATAAT*** ***
originalCons : TCCTCAAATAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGA-AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG--ATTTTT---TTTTTTTA
finalCons : TCCTCAAATAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATA------TATAT-TACTT---GATCTCTATTAA----GAATGGGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATAAT---AAAAA-A-TA-TTGGGGATANGGTG--------GGGGCG-GGGGG----------G--GG--GGGG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTG---TTTTT---TTTTTTTA
Alignments
lowQualScore : 111111 1 11111111 22222222 11111111 2222222222222222222222222 333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 5 66 3 222222 4 777 8888 3 3 33333333 7 3 6 3 22 22222222 5 33333333 33 5555555555555555555555555 77 33 444 0 66666 777777777777777777777777777777777777777777777777777777777 33 2 555
lowQualScore : . . .. . ...... . ... .... . . ........ . . . . .. ........ . ........ .. ......................... .. .. ... . ..... ......................................................... .. . ...
lowQualScore : 3 0 99 7 888888 4 888 5555 3 5 99999999 8 3 7 3 33 33333333 8 22222222 99 2222222222222222222222222 33 44 444 1 22222 222222222222222222222222222222222222222222222222222222222 44 5 000
consensus : TCCTCAAATAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATATA------TAT-TACTT---GATCTCTATTAAGAATG----GGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATA---AT---AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCGGGGGG-----G--GG--GGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--G-TTTTT---TTTTTTTA
Reference ( family-1122 ) : TCCTCAAATAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATATA------TAT-TACTT---GATCTCTATTAAGAATG----GGGAGAATTAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATA---AT---AATAAAAA-A-TA-TTGGGGATANGGTG--------GGGGCGGGGGG-----G--GG--GGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--G-TTTTT---TTTTTTTA
gi|1 : TCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATATA------TAT-TACTT---GATCTCTATTAAGAATG----GGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGAT---AATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTGGGGGG-----G--GG--GGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--GATTTTT---TTTTTTTA
gi|10 : AAA-AAAGACAAGAGAAAAATGAAGATAATAATA---A----ACCAAAAA-ACTA-TTGGGGATATGTTGGACCCAGTGGGGTGGGTGG-----G--AAATGGG-C-----------------------GT--TGCCATAAAA--T----GCAAATATCA--A---CGAC-----ATTTACAATTAACAACATTTAAAATC---------------------A--------------GTCCGCATCCAACTTT--G-TTTGT---TTTTTT
gi|11 : AAA-AAAGACAAGAGAAAAATGAAGATAATAATA---A----ACCAAAAA-ACTA-TTGGAGATTTGGTGGACCCAGTGGGGTGGGTGG-----GATGG--GGG-T-----------------------GT--TGCCATAAAAAATT-AAGCAAATATCA--A---CAAC-----ATTTA--------------------CAATTAACAACATTTAAAAATCA--------------GTCCGCATCCAAGTTT--G-TTTT
gi|12 : tAAAGGTGAAGATAATAATA---ATGATAATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGG-------------------AGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--T-TTTT
gi|13 : TCTTCAATTAGT-CAGTTTTGTAA-------------TTTATAATTATA-ATA------TAT-TACTT---GATCTCTACTAAGAATG----GGGAGAATTAATAATAAAA-AAA-AGAAAAGAAAAGTGAAGATAATAATA---Aa
gi|14 : GGGGGGGGGGGG--------GGGGGGGGGGG-----G--GG--GGG-G-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--G-ATTTT---TTTTTTa
gi|15 : gggggg--GGG-G-----------------------AT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----ATATA--------------------C---------------------A--------------GTTCACATCCAAGTTT--G-TTTTG---TTTTTTTaaa
gi|16 : -----------------------GT--TGCCAAAACAGGTTGAAGCAAATATCA--A---ACAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--G-TTTCT---TTTTTTt
gi|17 : ttCAAAAGAGGTTGAAGCAAATATCA--GTACAG-C-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTCT--G-TTATT---TTTaa
gi|18 : CAAATATCA--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--G-ATTTT---TTTTTTaaaaa
gi|2 : TTTGTAAAAGTATATT------TATGTATTTTCCGATCTCTATT-AGAATG----GGGAGAATTGATAAAAAAAGAAAGAAAAGAGAAAAATGAAGGTAATAAT----AT---AA-AAAAA-A-TA-TTGTGGATATGGTA--------GGCACAGGGGG-----AT-GG--GGC-A-----------------------GTGATGCCATAGGAGGTTGAAGCATATATCAACA---AGATTTACGATAAA--------------------C---------------------AACATTTAACAATCTATCCATATCCAAGTTT--G-TTTTG---TTTaaa
gi|3 : ttcttcaatttgtctgtTCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATATA------TAT-TACTT---GATCTCTATTAAGAATG----GGGAGAATAAATAATAAAA-AAAGAGAAAAGAAAGGTGAAGATAATAATAATGAT---AATAAAAA-A-TA-TTGGGGATAAGGTG--------GGGGTGGGGGG-----G--GG--GGG-G-----------------------GGGAGGCCAAAAGAGGTTGAAGCAAATATCG--A---AGAC-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTT--G-ATTTT---TTTTTTa
gi|4 : TCCTCAAATTAGTCAATTTTGTAAATGTATATAATACTTTATAATTGCATATA------TAT-TACTT---GATCTCTGTTAAGAATG----GGGAGAATTAATACTAAAA-AAGGA---AGGAAAGGTGAA--------TG---AT---AATAAAAA-A-TA-TTGGGGATAGGGTG--------GGGGTGTGGGG-----GT-GG--GGGTG-----------------------GT--TGCCAAAAGAGGTTGAAGCAAATATCA--A---AAAC-----CTTTA--------------------C---------------------A--------------GTCCACATCCAAG-----A-TTTTT---TTTTTTa
gi|5 : TCCTCAAATTAGTCAATTTTGTAAATGTATA--ATACTTTATAGTTGTATATACATGTATAT-TAATT---GATCTCTATTAAGAATGAATGGGGAGAATTAATAATAAAA-AAAGG--AAAGAAAGGTGAAGATAATAATA---AT---AA----AA-A-TA-TTGGGGAT-------------------GGGGGG-----G--GG----------------------------------TG-CAAAAGAGGTTGAAGCAAATATCA--A---AATC-----ATATA--------------------C---------------------A--------------GTCCACACCCAAGTT-----TTTTTGGGTTTTTTTA
gi|6 : TCTTCAATTAAT-CAGTTTTGTAAATTTATA--AAACCTTGTAACTATATATA-----------ACTT---GGTCTGTATTAAGAATG----GGGAGAATTAATAATAAAA-AA--AGAAAAGAAAAGTGAAG------------------ATAAAAA-A-TA-TTGGGGATAGGGT---------GGACCCGGAGG-----G--GT--GGG-G-----------------------GT--TACCAAAGGATGTTGAAGCAAATATCA--C---CAAC-----ATATA--------------------C---------------------A--------------GTCTACATT---G-TT--G-TTTTT---TTTT
gi|7 : TAAATGTAAA--ATACTTTATAG----ATATA------TAT-TACTT---GATCTCTATTAAGAATG----GGGAGAATTAATAATAAAA-CAAGA--AAAGAAAGGTGAAGATAATAATA---AT---AATAAAAATA-TA-TTGGGAATATGGTG--------GGCCCAGGGGG-----C--GG--GGG-A-----------------------GT--TTCCAAAAGGGGTTGAAGCACATATCA--A---CAAC-----ATATT--------------------C---------------------A--------------AGCCACATCCACGTTT--G-TTTGT---TGTTTTc
gi|8 : TCTCTATTAAGAATG----GGGAGAATTAATAATAAAA-AAAGA--AAAGAAAGGTGAAGATAATAATA---AT---AA-AAAAA-A-TATTTGGGGGGGAGGGG--------GGGGCGGGGGG-----G--GG--GGG-GGGGGGGGGGGAGGGCGTGGGGTAGT--TACCAAAAGAGGTTGAAGCAAATATCA--A---ACAT-----ATATA--------------------C---------------------A--------------GTCCACATCCAAGTTTAAG-TTTGT---TT
gi|9 : TCCTCAAAGAATTCAATTTTGTAAATGTATA--ATACTTTATAACTGTATATA------TAT-TACTT---GATCTCTATTAAGAATG----GGGAGAATAAATAATAAAA-AAAAAAAAAAGGAAGGTGGAGGAAGGGGAA---ATG--GAGAAAGG-A-GG-GAGGGGGGGGGGGG--------GGGGGGGGGGGGGGGGG--GG--GGG-G-----------------------GT--TGCCAAAAGAGGgctg