lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 77777777777777777777777777777777777777777 22222222 1111111 44444444444444444444444444444444444 2 111111111111111111111111111111111111111111111111111111111111111111111111111 2222222 11 1 44444444444444444 22222222222 111 11 2222222 2222222222 11 33333333 1 4
lowQualScore : 1 0 9 2 11111111111111111111111111111111111111111 2 7777 11111111 2222222 777 4 77777777777777777777777777777777777 0 6 5 222222222222222222222222222222222222222222222222222222222222222222222222222 0000000 4 2 11 55 3 4 55 3 4 55 0 4 4 66 777 00000000000000000 1 4 0 22222222222 222 0 11 6666666 3 3333333333 0 3 88 2 33333333 0 7 7 77777 0
lowQualScore : . . . . ......................................... . .... ........ ....... ... . ................................... . . . ........................................................................... ....... . . .. .. . . .. . . .. . . . .. ... ................. . . . ........... ... . .. ....... . .......... . . .. . ........ . . . ..... .
lowQualScore : 8 4 0 4 77777777777777777777777777777777777777777 9 7777 88888888 1111111 888 4 44444444444444444444444444444444444 3 0 0 333333333333333333333333333333333333333333333333333333333333333333333333333 6666666 0 3 33 55 8 0 66 2 4 00 9 2 4 11 888 99999999999999999 0 0 4 44444444444 888 8 00 0000000 0 2222222222 8 6 88 0 77777777 7 3 0 77777 0
consensus : NNNNACAAGAAAAACTTGATGCAAAGCATCAATTC---C--GC---AAA--A--A--T---GT-----CAGGAC-TCTCCCG---AAGCATCGATTGA-------ATAGTTTG---ATTC---T-CTT--------CCAT-----------CA----------ATCCATTGCAATCTCTGCCAG-AA-------ANAGA-CTG--------------T------------CT---A-T---------------T-TT-----AGATCGAAAT---CCTCACT-AGAATTATAA--ACCAATCAAA-TC-TTGCTTACATCAA-GC-ATGTGTCCGACAGT-GTA--AACAAA---GTGACAGTGCGC---------TATTTCTAAAATAAATGAATAN--AAATGACGTTATT--TAAA-------GTGAGA-GAA------ATATTNTCT-TATTCTTACAGC--GCGGGAAATACGCCGTACCGGCAAANTCGCT-TATTG
Reference ( gi|3 ) : TACGACAAGATAAACTTAATGAAAAGCATCGATTT-A-C--GC---AAA--A--A--T---GT-----C------TTTCCCA---AAGCATCGATTGA-------CTAGTTAG---ACTC---T-CTT--------CCAT-----------CA----------ATCCATTGCAATCACTGACAG-AA-------ATAGA-CTG--------------T------------TT---A-T---------------T-TT-----AGATCGAACT---TTTCACT-AGAATTCTAA--ACCAATCTAA-TC-TTGCTTACATCAA-GT-ATGTGTCCGGCAGT-GTA--AACAAA---GTGACAGTGCGT---------TATTTCTAAGATAATTGAATAC--AAATGACGTTATT--TAAA-------GTGAAA-TAA------ATATTTTCG-TGTTCTTACAGCGTGCGAAAAATACACCGTGCAGGCAAATTCGCTATATTG
gi|6 : ACAAGAAAAACTTATTAAAAATAATGAA---------AA---AAA--A--A--T---GTAAGGAC------TCCCTCA---AAGCATTGATTGA-------ATAGTTTG---ATTC---T-CTTCCATCAATCCATTCAAGTACCTACATAATTCCTTGATCCATTGCAATCTCTGACAG-AA-------AAAGA-CTA--------------T------------TTTTTG-T---------------T-TA-----AGTTTGAAAT---CCTCACT-AGAATCCTAA--AGCAATCAAA-TC-TTGCTTACATTAA-GT-TTGTTTCCAACAGT-GTA--AACAAA---GCGACAGTGCAC---------TGTTTCTAAAATAA
gi|5 : gtACAAGAAAAAGCTGATGCAAATCATCAATTT-T-TTTGC---AAA--A--A--A---AT-----C------TCTACAAGAGAAGCATTGATTGAAAATGTTCCA-TCAGTCCATTCAAGTACCT--------CTAT-----------AATTTCTTG---ATCCATTGCAATCTCTGCCAG-GA-------AAAGA---------------------------------------------------------T-----AAA---AA-T---TCTCTCT-AGAATTATAA--ACCAATCGAA-TC-TTGTTTACATAAA-GC-ATGTTTCCGACAGT-TTA--AACAAA---GTGACA--GCGTC--------TATTTCTTAAATAAACAAA-ACAAAAATGTGGTTATT--TAAA-------GTAAGA-GAA------ATA-TTTCT-TATTCacg
gi|17 : AGAAAAACTTAATGCAAAGCATCAATTCAA-C--ACAAAAAA--A--A--TACAGA-----C------TATCCCG---AAGCATTGACTGA-------
gi|14 : AGAAAAACTTGATGCATAGAATCGATTC-GCC--GC---AAGTTA--A--T---GTCAGGAC------TCTCCCG---AAGCATTGATTGA-------ATAat
gi|13 : TAAACTTAATGAAAAGCATCGATTT-A-C--GC---AAA--A--A--T---GT-----C------TTTCCCA---AAGCATCGATTGA-------CTAGTTAG---ACTC---T-CTT--------CCAT-----------CA----------ATCCATTGCAAtcgtcataaatcaacct
gi|1 : AAACTTGATGCAAAGCATCAATTC-C-T--CC---AAG--AGAA--T---TT-----CAGGAC-TCTCCCG---AAGCATCCATTGA-------ATAGTTTG---ATTC---T-CTT--------GAAT-----------CA----------ATCCATT-CAA
gi|7 : gaAACTTGGTGCAAAGCATCAGTTT-G-CC-AC---AAA--A--AC-T---GT-----CGGGATTTTCCCCG---AAGCATCAATTGA-------ATACCTTG---ATTC---T-CTC--------CCAT-----------CA----------ATCCATTGCAATCTCTGCCAGAAA-------AAAGA-CTGTAATTCTGCTATCTT------------CT---G-T---------------T-TT-----AGATCAATAT---CCTCACTAAAAATTATAA--GCCAATCAAA-TC-TTGCTTACGTCAG-GC-ATGTGTCTGACAGT-GTA--AACATA---GTGACAGTggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagtgatgatatttctaaaaaaaatgaataaagatattgttatttaaagtgagagaaatattgtcttattcttacagtgggcggaaaatacaccataccggcaaaactatcg
gi|15 : agaaacAGCTTGACGCAAAGCATCAATT----C--GCCTAAAA--A--A--T---GT-----CAGGAC-TCTCCCC---AAGCCTCGATTGA-------ATAGTTCG---ATTC---T-CTT--------
gi|4 : taacAAAGTTTCAATT----C--GC---AGA--A--AATT---GT-----CATCAC-TCTCCCG---AAG-AGCAA-------------AGTTAA------------------------TAT-----------TA----------TTCTATTGCATTTTCTGCCAT-AA------------------------------T------------CG---A-T---------------T-TT-----AGAGCAAAAT---TCTAACT-ATTATTATAA--A-------------TTGCTTACATCAA-GC-ATGTGTCCGGCAGTGGTAACAATAAAAACATAAC--TACATCCTAAATAATATTT-TAAACTGCTTGCATAT---AAT-ACGTT-TTAGTGAATTGCTTTGTAAGACTAAGTGCGTATATTTTTGATGCTATTACAG--------AAACACGCCGT-CAGG----TTCATT-TATTG
gi|8 : gataaaaaaagaaagac-C--GC---AAA--G--AAGT---GT-----CAGGAC-TCTCCCG---AAGCATCGATTGA-------ATAGTTTC---ATGC---T-CTT--------CGGC-----------CA----------TTGCATTGCAATC--TGA--------------TAGA-CTG--------------T------------TC---A-TCTCGTATATTCCATTT-TC-----AGATCGAAAT---CCTCACT-GAAATTATAG--ACCAGTCGAA-T---TGGTTACATCCA-GC-ATACGTCCGACAGT-GTA--AACACA---ACGAAAGTGCAC---------TAGTTCTAAAATAAATGAA
gi|9 : TTCCCA---TAGCATTGATTGA-------ATAGTTTG---ATTC---T-CTT--------TCAC-----------CA----------ATTCATTGCAATCTCTGCTAA-AA-------AT-TA-CTG--------------TAAATCTGCTATCTTCAAA-T---------------T-TT-----AGATAGAAAT---CCTCACT-AAAATTATAA--ACCAATCAAA-CC-TTGCTTACATCAAGGT-AT-TATTTGACAGT-GAA--AATAAA---GTGACTGTGTGC---------TTTTTCTAAAATAAATGAA
gi|2 : tcTT--------CC-T-----------TG----------ATTCATTGCATTCTCTGACAG-GACAAGAATATAAAGCTG--------------C------------T----A-T---------------C-TTCTGTGAGATCTAAAT---CCTCACT-AGAATCATAA--ACCAATCAAA-TC-GTGCTTA-------GT-ATGCACCCGACAGT-GTA--AATAAA---GTAACAGTGTTC---------TGGTTCTAAAATAG-TGAATAA--AATTGA-GTTATT--TAAA-------GCGTGT-GAA------ATGTCGTCT-TATTCGTATAGCTTGCGGGAAATACACCACACCAGCAAAATCGC
gi|12 : agaaaaatgcaaagaaaatgtcaggtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatccacttaaggacctatattaCTGCCAG-AA-------AAAAA-CTGAACTGATATGT---T------------CT---AGT---------------T-TT-----AGATCAAATTCATTTTTGTT-A-----CCAACCACCAATCAAA-TTATCGCTTACATTAG-GA-AAATGTCCGATAAC-ATA--AA
gi|10 : -------ATTGA-TTA--------------TA-----------TT---A-T---------------TAGT-----AGATCGCAAT---CCTCACT-AGAAT---------CAATCTTA-TC-TTGGTAAAAT-AA-TTCATATGTCCGACAGT-ATA--AACAAA---ATGA------------------------AGGA-------------AAGTGACGTTATT--TGAA-------GTGAAA-GAA------ATATTCTCacgatagacag
gi|16 : ctatacaattccttgatcc--------------T------------CT---A-T---------------T-TA-----AGATAGAAAT---CCTCACT-TGAACTGTCA--ACCAATAAAACTA-TTCCTTACATCAtaattt
gi|1 : gtaaatgggcttgctgtatACAAA---GTGAT-----GA---------TATTTCTAAAAAAAATGAATAA--AGATATTGTTATT--TAAA-------GTGAGA-GAA------ATATTGTCT-TATTCTTACAGTGGGCGGAAAATACACCATACCGGCAAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AACTGAATGCAGAGCAGCTATTCGCCGCAATACATTTCAGGACTCTTCAGAAGCAGTTTATTCTATACCATCAATTCATTGCAATATGTGTCCGGAAACGACTGTAAATCTGCAATCTTATATTTTTAG
Unaligned ( gi|18 ): GAAGCTTGATGCAAGCCATCAACAATCGTCGCAATAATTTCAGGACTCGCCTGAAGCAT
Alignments
lowQualScore : 333333333 111 11 1111111111111111111 33333333333333333333333 8888888888888888888888888888888888888888888888888888888888 11111 55 4
lowQualScore : 3 44 000000000 000 3 999 11 55 777 3 33 666 5555555555555555555 22222222222222222222222 4 4 2222222222222222222222222222222222222222222222222222222222 22222 2 3 3 55 0 3 44 4 0 2 88 1 5 1 99 8 55 0 6 0 1 0
lowQualScore : . .. ......... ... . ... .. .. ... . .. ... ................... ....................... . . .......................................................... ..... . . . .. . . .. . . . .. . . . .. . .. . . . . .
lowQualScore : 3 66 000000000 888 1 666 55 00 999 3 55 444 4444444444444444444 55555555555555555555555 0 0 3333333333333333333333333333333333333333333333333333333333 77777 0 6 6 00 6 6 22 0 9 0 88 0 0 0 66 8 00 7 0 7 0 0
consensus : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--T--C--C---GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTA-TAA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAANTCGCTATATTG
Reference ( family-1119 ) : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--T--C--C---GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTA-TAA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATANAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGC--GCGGGAAATACGCCGTACCGGCAAANTCGCT-TATTG
gi|1 : AA-AACTTGATGCAAAGCATCAAT--T--C--C---TC---CA-AGAGAA--TTTCAGGACTCTCCC---GAAGCATCCATTGAATA-GTTTGAT---TCT---------CT--------TGAAT-----------CA----------ATCCATT-CAA
gi|1 : gACAAAGTGAT-----GATATTTCTAAAAAAAAT-GAATAAAGATATTGTTATTTAAAGTGAGAGAAATATTGTCTTATTCTTACAGTGGGCGGAAAATACACCATACCGGCAAAggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagtgatgatatttctaaaaaaaatgaataaagatattgttatttaaagtgagagaaatattgtcttattcttacagtgggcggaaaatacaccataccggcaaaactatcg
gi|10 : gaaaacttgatgcaaagcatcaattcctccaagagaatttcaggactctcccgaagcatccattgaatagtttgattctcttgaatcaatccattcaaggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-----AGATCGCAATCCTCACT-AGAAT----------CAATCTTA-TC-TTGGTAAAATAAT-TCATATGTCCGACAGTATAAACA--------------------------AAAT-GAAGGAAAGTGACGTTATTTGAAGTGAAAGAAATATTCTCTAATTactatcg
gi|11 : ctatacaattccttgatccattgattatattattag-AACTGAATGCAGAGCAGCTAT--T--CGCC---GC---AATA---CA--TTTCAGGACTCTTCA---GAAGCA------------GTTT-AT---TCT---------AT--------ACCAT-----------CA----------ATTCATTGCAATATGTGTCCGG-AAA------C-GA--------CTG--------------T--------------t
gi|12 : CTG-CCAG-AAA------AAAA--------CTGAACTGATATGT---T--------------CT----AGTTTT-----AGATC-AAAT--TCATT-TTTGTTACCAACCACCAATCAAA-TTATCGCTTACATTAG-GAAAATGTCCGATAACATAAAaaatctgcaatcttatatttttag
gi|13 : A-AACTTAATGAAAAGCATCGAT--T--TA-C---GC---AA-A---AA--TGTC-----TTTCCC---AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAAacgatagacag
gi|14 : tAGAAA-AACTTGATGCATAGAATCGAT--T--CGCC---GC---AA-GTT-AA--TGTCAGGACTCTCCC---GAAGCATTGATTGAATA-
gi|15 : AAC-AGCTTGACGCAAAGCATCAAT--T--C------GCCTAAA-A---AA--TGTCAGGACTCTCCC---CAAGCCTCGATTGAATA-GTTCGAT---TCT---------CT--------Ttcgtcataaatcaacct
gi|16 : t--------------T--------------CT----A-TTTA-----AGATAGAAATCCTCACT-TGAACTG-TCA--ACCAATAAAACTA-TTCCTTACATCA
gi|17 : gtaaatgggcttgctgtatAGAAA-AACTTAATGCAAAGCATCAAT--T--CAAC---ACAAAAA-A---AA--TA-CA-GACTATCCC---GAAGCATTGACTGAAT
gi|18 : A-AGCTTGATGCAAGCCATCAACAAT--CGTC---GC---AA-T---AA--TTTCAGGACTCGCCT---GAAGCAT
gi|2 : gT--------TCC-T-----------TG----------ATTCATTGCATTCTCTG-ACAG-GAC------AAGAATATAAAGCTG-----------------------------CT----A-TCTTCTGTGAGATCTAAATCCTCACT-AGAATCA-TAA--ACCAATCAAA-TC-GTGCTT------A-GTATGCACCCGACAGTGTAAATAAAGTAACAGTGTTCTGGTTCTAAAAT-AGT-GAATAAAATTGA-GTTATTTAAAGCGTGTGAAATGTCGTCTTATTCGTATAGCTTGCGGGAAATACACCACACCAGCAAAATCGC
gi|3 : agaaaaatgcaaagaaaatgtcaggtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatccacttaaggacctatattaACAAGATA-AACTTAATGAAAAGCATCGAT--T--TA-C---GC---AA-A---AA--TGTC-----TTTCCC---AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCACTG-ACAG-AAA------TAGA--------CTG--------------T--------------TT----A-TTTT-----AGATCGAACTTTTCACT-AGAATTC-TAA--ACCAATCTAA-TC-TTGCTTACATCAA-GTATGTGTCCGGCAGTGTAAACAAAGTGACAGTGCGTTATTTCTAAGATAATT-GAATACAAATGACGTTATTTAAAGTGAAATAAATATTTTCGTGTTCTTACAGCGTGCGAAAAATACACCGTGCAGGCAAATTCGCTATATTG
gi|4 : tacgAAGAAA-GAC-------AAAGTTTCAAT--T--C------GC---AG-A---AAATTGTCATCACTCTCCC---GAAG-AGCAA------A-GTT-AAT----------------------------AT-----------TA----------TTCTATTGCATTTTCTG-CCAT-AA------------------------------------T--------------CG----A-TTTT-----AGAGCAAAATTCTAACT-ATTATTA-TAA--A-------------TTGCTTACATCAA-GCATGTGTCCGGCAGTGGTAACAA
gi|5 : gataaaaaACAAGAAA-AAGCTGATGCAAATCATCAAT--T--T--TTTTGC---AA-A---AA--AATC-----TCTACAAGAGAAGCATTGATTGAAAATGTTCCATCAGTCCATTCAAGTACC--------TCTAT-----------AATTTCTTG---ATCCATTGCAATCTCTG-CCAG-GAA------AAGA---------------------------------------------------T-----AAA----AATTCTCTCT-AGAATTA-TAA--ACCAATCGAA-TC-TTGTTTACATAAA-GCATGTTTCCGACAGTTTAAACAAAGTGACAGCGT-CTATTTCTTAAATAAACAAAACAAAAATGTGGTTATTTAAAGTAAGAGAAATATT-TCTTATTCtaaaaacataactacatcctaaataatattttaaactgcttgcatataatacgttttagtgaattgctttgtaagactaagtgcgtatatttttgatgctattacagaaacacgccgtcaggttcatttattg
gi|6 : ACAAGAAA-AACTTATTAAAAATAATGAA-------------AA---AA-A---AA--TGTAAGGACTCCCTC---AAAGCATTGATTGAATA-GTTTGAT---TCT---------CTTCCATCAATCCATTCAAGTACCTACATAATTCCTTGATCCATTGCAATCTCTG-ACAG-AAA------AAGA--------CTA--------------T--------------TTTTT-G-TTTA-----AGTTTGAAATCCTCACT-AGAATCC-TAA--AGCAATCAAA-TC-TTGCTTACATTAA-GTTTGTTTCCAACAGTGTAAACAAAGCGACAGTGCACTGTTTCTAAAATAAAC-G
gi|7 : gtAGAAACAACTTGGTGCAAAGCATCAGT--TTGC--C---AC---AA-A---AAC-TGTCGGGATTTTCCCC--GAAGCATCAATTGAATA-CCTTGAT---TCT---------CT--------CCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAGAAAA------AAGA--------CTGTAATTCTGCTATCTT--------------CT----G-TTTT-----AGATCAATATCCTCACTAAAAATTA-TAA--GCCAATCAAA-TC-TTGCTTACGTCAG-GCATGTGTCTGACAGTGTAAACATAGTGACAGT
gi|8 : --C---GC---AA-A---GAAGTGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTCAT---GCT---------CT--------TCGGC-----------CA----------TTGCATTGCAATCT----------GA------TAGA--------CTG--------------TTCATCTCGTATATTCC----A-TTTTC----AGATCGAAATCCTCACT-GAAATTA-TAG--ACCAGTCGAA-T---TGGTTACATCCA-GCATACGTCCGACAGTGTAAACACAACGAAAGTGCACTAGTTCTAAAATAAAT-GAA
gi|9 : TCCC---ATAGCATTGATTGAATA-GTTTGAT---TCT---------CT--------TTCAC-----------CA----------ATTCATTGCAATCTCTG-CTAA-AAATTACTGTAAATCTG----CTA--------------T--------------CTTCAAA-TTTT-----AGATAGAAATCCTCACT-AAAATTA-TAA--ACCAATCAAA-CC-TTGCTTACATCAAGGTAT-TATTTGACAGTGAAAATAAAGTGACTGTGTGCTTTTTCTAAAATAAAT-GAA
Alignments
lowQualScore : 333333333 111 11 1111111111111111111 33333333333333333333333 8888888888888888888888888888888888888888888888888888888888 11111
lowQualScore : 3 44 000000000 000 3 999 11 55 777 3 33 666 5555555555555555555 22222222222222222222222 4 4 2222222222222222222222222222222222222222222222222222222222 22222 2 3 3 55 0 3 44 4 0 2 88 1 0 5 99 8 0 88
lowQualScore : . .. ......... ... . ... .. .. ... . .. ... ................... ....................... . . .......................................................... ..... . . . .. . . .. . . . .. . . . .. . . ..
lowQualScore : 3 66 000000000 888 1 666 55 00 999 3 55 444 4444444444444444444 55555555555555555555555 0 0 3333333333333333333333333333333333333333333333333333333333 77777 0 6 6 00 6 6 22 0 9 0 88 0 4 0 66 8 7 33
consensus : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--T--C--C---GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAAATCGCTATATTG
Reference ( family-1119 ) : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--T--C--C---GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAANTCGCTATATTG
gi|1 : AA-AACTTGATGCAAAGCATCAAT--T--C--C---TC---CA-AGAGAA--TTTCAGGACTCTCCC---GAAGCATCCATTGAATA-GTTTGAT---TCT---------CT--------TGAAT-----------CA----------ATCCATT-CAA
gi|1 : gACAAAGTGAT-----GATATTTCTAAAAAAAAT-GAATAAAGATATTGTTATTTAAAGTGAGAGAAATATTGTCTTATTCTTACAGTGGGCGGAAAATACACCATACCGGCAAAA---CTATggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagtgatgatatttctaaaaaaaatgaataaagatattgttatttaaagtgagagaaatattgtcttattcttacagtgggcggaaaatacaccataccggcaaaactatcg
gi|10 : gaaaacttgatgcaaagcatcaattcctccaagagaatttcaggactctcccgaagcatccattgaatagtttgattctcttgaatcaatccattcaaggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-----AGATCGCAATCCTCACT-AGAAT----------CAATCTTA-TC-TTGGTAAAATAAT-TCATATGTCCGACAGTATAAACA--------------------------AAAT-GAAGGAAAGTGACGTTATTTGAAGTGAAAGAAATATTCTCTAATTcg
gi|11 : ctatacaattccttgatccattgattatattattag-AACTGAATGCAGAGCAGCTAT--T--CGCC---GC---AATA---CA--TTTCAGGACTCTTCA---GAAGCA------------GTTT-AT---TCT---------AT--------ACCAT-----------CA----------ATTCATTGCAATATGTGTCCGG-AAA------C-GA--------CTG--------------T--------------t
gi|12 : CTG-CCAG-AAA------AAAA--------CTGAACTGATATGT---T--------------CT----AGTTTT-----AGATC-AAAT--TCATT-TTTGTTACCAACCACCAATCAAA-TTATCGCTTACATTAG-GAAAATGTCCGATAACATAAAaaatctgcaatcttatatttttag
gi|13 : A-AACTTAATGAAAAGCATCGAT--T--TA-C---GC---AA-A---AA--TGTC-----TTTCCC---AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAAacgatagacag
gi|14 : tAGAAA-AACTTGATGCATAGAATCGAT--T--CGCC---GC---AA-GTT-AA--TGTCAGGACTCTCCC---GAAGCATTGATTGAATA-
gi|15 : AAC-AGCTTGACGCAAAGCATCAAT--T--C------GCCTAAA-A---AA--TGTCAGGACTCTCCC---CAAGCCTCGATTGAATA-GTTCGAT---TCT---------CT--------Ttcgtcataaatcaacct
gi|16 : t--------------T--------------CT----A-TTTA-----AGATAGAAATCCTCACT-TGAACTGT-CA--ACCAATAAAACTA-TTCCTTACATCA
gi|17 : gtaaatgggcttgctgtatAGAAA-AACTTAATGCAAAGCATCAAT--T--CAAC---ACAAAAA-A---AA--TA-CA-GACTATCCC---GAAGCATTGACTGAAT
gi|18 : A-AGCTTGATGCAAGCCATCAACAAT--CGTC---GC---AA-T---AA--TTTCAGGACTCGCCT---GAAGCAT
gi|2 : gT--------TCC-T-----------TG----------ATTCATTGCATTCTCTG-ACAG-GAC------AAGAATATAAAGCTG-----------------------------CT----A-TCTTCTGTGAGATCTAAATCCTCACT-AGAATCAT-AA--ACCAATCAAA-TC-GTGCTTA-------GTATGCACCCGACAGTGTAAATAAAGTAACAGTGTTCTGGTTCTAAAATAG-T-GAATAAAATTGA-GTTATTTAAAGCGTGTGAAATGTCGTCTTATTCGTATAGCTTGCGGGAAATACACCACACCAGCAAAATCGC
gi|3 : agaaaaatgcaaagaaaatgtcaggtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatccacttaaggacctatattaACAAGATA-AACTTAATGAAAAGCATCGAT--T--TA-C---GC---AA-A---AA--TGTC-----TTTCCC---AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCACTG-ACAG-AAA------TAGA--------CTG--------------T--------------TT----A-TTTT-----AGATCGAACTTTTCACT-AGAATTCT-AA--ACCAATCTAA-TC-TTGCTTACATCAA-GTATGTGTCCGGCAGTGTAAACAAAGTGACAGTGCGTTATTTCTAAGATAATT-GAATACAAATGACGTTATTTAAAGTGAAATAAATATTTTCGTGTTCTTACAGCGTGCGAAAAATACACCGTGCAGGCAAATTCGCTATATTG
gi|4 : tacgAAGAAA-GAC-------AAAGTTTCAAT--T--C------GC---AG-A---AAATTGTCATCACTCTCCC---GAAG-AGCAA------A-GTT-AAT----------------------------AT-----------TA----------TTCTATTGCATTTTCTG-CCAT-AA------------------------------------T--------------CG----A-TTTT-----AGAGCAAAATTCTAACT-ATTATTAT-AA--A-------------TTGCTTACATCAA-GCATGTGTCCGGCAGTGGTAACAA
gi|5 : gataaaaaACAAGAAA-AAGCTGATGCAAATCATCAAT--T--T--TTTTGC---AA-A---AA--AATC-----TCTACAAGAGAAGCATTGATTGAAAATGTTCCATCAGTCCATTCAAGTACC--------TCTAT-----------AATTTCTTG---ATCCATTGCAATCTCTG-CCAG-GAA------AAGA---------------------------------------------------T-----AAA----AATTCTCTCT-AGAATTAT-AA--ACCAATCGAA-TC-TTGTTTACATAAA-GCATGTTTCCGACAGTTTAAACAAAGTGACAGCGT-CTATTTCTTAAATAAACAAAACAAAAATGTGGTTATTTAAAGTAAGAGAAATATT-TCTTATTCtaaaaacataactacatcctaaataatattttaaactgcttgcatataatacgttttagtgaattgctttgtaagactaagtgcgtatatttttgatgctattacagaaacacgccgtcaggttcatttattg
gi|6 : ACAAGAAA-AACTTATTAAAAATAATGAA-------------AA---AA-A---AA--TGTAAGGACTCCCTC---AAAGCATTGATTGAATA-GTTTGAT---TCT---------CTTCCATCAATCCATTCAAGTACCTACATAATTCCTTGATCCATTGCAATCTCTG-ACAG-AAA------AAGA--------CTA--------------T--------------TTTTT-G-TTTA-----AGTTTGAAATCCTCACT-AGAATCCT-AA--AGCAATCAAA-TC-TTGCTTACATTAA-GTTTGTTTCCAACAGTGTAAACAAAGCGACAGTGCACTGTTTCTAAAATAAAC-G
gi|7 : gtAGAAACAACTTGGTGCAAAGCATCAGT--TTGC--C---AC---AA-A---AAC-TGTCGGGATTTTCCCC--GAAGCATCAATTGAATA-CCTTGAT---TCT---------CT--------CCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAGAAAA------AAGA--------CTGTAATTCTGCTATCTT--------------CT----G-TTTT-----AGATCAATATCCTCACTAAAAATTAT-AA--GCCAATCAAA-TC-TTGCTTACGTCAG-GCATGTGTCTGACAGTGTAAACATAGTGACAGT
gi|8 : --C---GC---AA-A---GAAGTGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTCAT---GCT---------CT--------TCGGC-----------CA----------TTGCATTGCAATCT----------GA------TAGA--------CTG--------------TTCATCTCGTATATTCC----A-TTTTC----AGATCGAAATCCTCACT-GAAATTAT-AG--ACCAGTCGAA-T---TGGTTACATCCA-GCATACGTCCGACAGTGTAAACACAACGAAAGTGCACTAGTTCTAAAATAAAT-GAA
gi|9 : TCCC---ATAGCATTGATTGAATA-GTTTGAT---TCT---------CT--------TTCAC-----------CA----------ATTCATTGCAATCTCTG-CTAA-AAATTACTGTAAATCTG----CTA--------------T--------------CTTCAAA-TTTT-----AGATAGAAATCCTCACT-AAAATTAT-AA--ACCAATCAAA-CC-TTGCTTACATCAAGGTAT-TATTTGACAGTGAAAATAAAGTGACTGTGTGCTTTTTCTAAAATAAAT-GAA
Alignments
lowQualScore : 333333333 111 11 1111111111111111111 33333333333333333333333 8888888888888888888888888888888888888888888888888888888888 11111
lowQualScore : 3 44 000000000 000 3 999 11 55 777 3 33 666 5555555555555555555 22222222222222222222222 4 4 2222222222222222222222222222222222222222222222222222222222 22222 2 3 3 55 0 3 44 4 0 2 88 1 0 5 99 8 0 7
lowQualScore : . .. ......... ... . ... .. .. ... . .. ... ................... ....................... . . .......................................................... ..... . . . .. . . .. . . . .. . . . .. . . .
lowQualScore : 3 66 000000000 888 1 666 55 00 999 3 55 444 4444444444444444444 55555555555555555555555 0 0 3333333333333333333333333333333333333333333333333333333333 77777 0 6 6 00 6 6 22 0 9 0 88 0 4 0 66 8 7 3
consensus : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--T--C--C---GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAAATCGCTATATTG
Reference ( family-1119 ) : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--T--C--C---GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAAATCGCTATATTG
gi|1 : AA-AACTTGATGCAAAGCATCAAT--T--C--C---TC---CA-AGAGAA--TTTCAGGACTCTCCC---GAAGCATCCATTGAATA-GTTTGAT---TCT---------CT--------TGAAT-----------CA----------ATCCATT-CAA
gi|1 : gACAAAGTGAT-----GATATTTCTAAAAAAAAT-GAATAAAGATATTGTTATTTAAAGTGAGAGAAATATTGTCTTATTCTTACAGTGGGCGGAAAATACACCATACCGGCAAAA---CTATggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagtgatgatatttctaaaaaaaatgaataaagatattgttatttaaagtgagagaaatattgtcttattcttacagtgggcggaaaatacaccataccggcaaaactatcg
gi|10 : gaaaacttgatgcaaagcatcaattcctccaagagaatttcaggactctcccgaagcatccattgaatagtttgattctcttgaatcaatccattcaaggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-----AGATCGCAATCCTCACT-AGAAT----------CAATCTTA-TC-TTGGTAAAATAAT-TCATATGTCCGACAGTATAAACA--------------------------AAAT-GAAGGAAAGTGACGTTATTTGAAGTGAAAGAAATATTCTCTAATTcg
gi|11 : ctatacaattccttgatccattgattatattattag-AACTGAATGCAGAGCAGCTAT--T--CGCC---GC---AATA---CA--TTTCAGGACTCTTCA---GAAGCA------------GTTT-AT---TCT---------AT--------ACCAT-----------CA----------ATTCATTGCAATATGTGTCCGG-AAA------C-GA--------CTG--------------T--------------t
gi|12 : CTG-CCAG-AAA------AAAA--------CTGAACTGATATGT---T--------------CT----AGTTTT-----AGATC-AAAT--TCATT-TTTGTTACCAACCACCAATCAAA-TTATCGCTTACATTAG-GAAAATGTCCGATAACATAAAaaatctgcaatcttatatttttag
gi|13 : A-AACTTAATGAAAAGCATCGAT--T--TA-C---GC---AA-A---AA--TGTC-----TTTCCC---AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAAacgatagacag
gi|14 : tAGAAA-AACTTGATGCATAGAATCGAT--T--CGCC---GC---AA-GTT-AA--TGTCAGGACTCTCCC---GAAGCATTGATTGAATA-
gi|15 : AAC-AGCTTGACGCAAAGCATCAAT--T--C------GCCTAAA-A---AA--TGTCAGGACTCTCCC---CAAGCCTCGATTGAATA-GTTCGAT---TCT---------CT--------Ttcgtcataaatcaacct
gi|16 : t--------------T--------------CT----A-TTTA-----AGATAGAAATCCTCACT-TGAACTGT-CA--ACCAATAAAACTA-TTCCTTACATCA
gi|17 : gtaaatgggcttgctgtatAGAAA-AACTTAATGCAAAGCATCAAT--T--CAAC---ACAAAAA-A---AA--TA-CA-GACTATCCC---GAAGCATTGACTGAAT
gi|18 : A-AGCTTGATGCAAGCCATCAACAAT--CGTC---GC---AA-T---AA--TTTCAGGACTCGCCT---GAAGCAT
gi|2 : gT--------TCC-T-----------TG----------ATTCATTGCATTCTCTG-ACAG-GAC------AAGAATATAAAGCTG-----------------------------CT----A-TCTTCTGTGAGATCTAAATCCTCACT-AGAATCAT-AA--ACCAATCAAA-TC-GTGCTTA-------GTATGCACCCGACAGTGTAAATAAAGTAACAGTGTTCTGGTTCTAAAATAG-T-GAATAAAATTGA-GTTATTTAAAGCGTGTGAAATGTCGTCTTATTCGTATAGCTTGCGGGAAATACACCACACCAGCAAAATCGC
gi|3 : agaaaaatgcaaagaaaatgtcaggtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatccacttaaggacctatattaACAAGATA-AACTTAATGAAAAGCATCGAT--T--TA-C---GC---AA-A---AA--TGTC-----TTTCCC---AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCACTG-ACAG-AAA------TAGA--------CTG--------------T--------------TT----A-TTTT-----AGATCGAACTTTTCACT-AGAATTCT-AA--ACCAATCTAA-TC-TTGCTTACATCAA-GTATGTGTCCGGCAGTGTAAACAAAGTGACAGTGCGTTATTTCTAAGATAATT-GAATACAAATGACGTTATTTAAAGTGAAATAAATATTTTCGTGTTCTTACAGCGTGCGAAAAATACACCGTGCAGGCAAATTCGCTATATTG
gi|4 : tacgAAGAAA-GAC-------AAAGTTTCAAT--T--C------GC---AG-A---AAATTGTCATCACTCTCCC---GAAG-AGCAA------A-GTT-AAT----------------------------AT-----------TA----------TTCTATTGCATTTTCTG-CCAT-AA------------------------------------T--------------CG----A-TTTT-----AGAGCAAAATTCTAACT-ATTATTAT-AA--A-------------TTGCTTACATCAA-GCATGTGTCCGGCAGTGGTAACAA
gi|5 : gataaaaaACAAGAAA-AAGCTGATGCAAATCATCAAT--T--T--TTTTGC---AA-A---AA--AATC-----TCTACAAGAGAAGCATTGATTGAAAATGTTCCATCAGTCCATTCAAGTACC--------TCTAT-----------AATTTCTTG---ATCCATTGCAATCTCTG-CCAG-GAA------AAGA---------------------------------------------------T-----AAA----AATTCTCTCT-AGAATTAT-AA--ACCAATCGAA-TC-TTGTTTACATAAA-GCATGTTTCCGACAGTTTAAACAAAGTGACAGCGT-CTATTTCTTAAATAAACAAAACAAAAATGTGGTTATTTAAAGTAAGAGAAATATT-TCTTATTCtaaaaacataactacatcctaaataatattttaaactgcttgcatataatacgttttagtgaattgctttgtaagactaagtgcgtatatttttgatgctattacagaaacacgccgtcaggttcatttattg
gi|6 : ACAAGAAA-AACTTATTAAAAATAATGAA-------------AA---AA-A---AA--TGTAAGGACTCCCTC---AAAGCATTGATTGAATA-GTTTGAT---TCT---------CTTCCATCAATCCATTCAAGTACCTACATAATTCCTTGATCCATTGCAATCTCTG-ACAG-AAA------AAGA--------CTA--------------T--------------TTTTT-G-TTTA-----AGTTTGAAATCCTCACT-AGAATCCT-AA--AGCAATCAAA-TC-TTGCTTACATTAA-GTTTGTTTCCAACAGTGTAAACAAAGCGACAGTGCACTGTTTCTAAAATAAAC-G
gi|7 : gtAGAAACAACTTGGTGCAAAGCATCAGT--TTGC--C---AC---AA-A---AAC-TGTCGGGATTTTCCCC--GAAGCATCAATTGAATA-CCTTGAT---TCT---------CT--------CCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAGAAAA------AAGA--------CTGTAATTCTGCTATCTT--------------CT----G-TTTT-----AGATCAATATCCTCACTAAAAATTAT-AA--GCCAATCAAA-TC-TTGCTTACGTCAG-GCATGTGTCTGACAGTGTAAACATAGTGACAGT
gi|8 : --C---GC---AA-A---GAAGTGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTCAT---GCT---------CT--------TCGGC-----------CA----------TTGCATTGCAATCT----------GA------TAGA--------CTG--------------TTCATCTCGTATATTCC----A-TTTTC----AGATCGAAATCCTCACT-GAAATTAT-AG--ACCAGTCGAA-T---TGGTTACATCCA-GCATACGTCCGACAGTGTAAACACAACGAAAGTGCACTAGTTCTAAAATAAAT-GAA
gi|9 : TCCC---ATAGCATTGATTGAATA-GTTTGAT---TCT---------CT--------TTCAC-----------CA----------ATTCATTGCAATCTCTG-CTAA-AAATTACTGTAAATCTG----CTA--------------T--------------CTTCAAA-TTTT-----AGATAGAAATCCTCACT-AAAATTAT-AA--ACCAATCAAA-CC-TTGCTTACATCAAGGTAT-TATTTGACAGTGAAAATAAAGTGACTGTGTGCTTTTTCTAAAATAAAT-GAA
blockSeqs : C AA TTTTT CTA T TT AT AG AGA T AG CAG ATTCAAGTACC TCAAGTACCTACATAATTCCTTG . A AAGACTGTAATTCTGCTATCTTCTG CTGTG G A C CC C TA G A TT G A AC C T
blockSeqs : . . CGCC AAA . . AG AG C . CG . CTTCCATCAA AATTTCTTG . . TAGACTGTTCATCTCGTATATTCCA C T . . . . A . A CG A . AC G T
blockSeqs : . . CGCC . . . C AG . . AG . AT CA . . TTACTGTAAATCTGCTATCTTCAAA . G . . . . C . A CA A . TG T
blockSeqs : . . CAAC . . . . AG . . CC . CT CA . . AAGAATATAAAGCTGCTA . A . . . . C . A CA G . A .
blockSeqs : . . CGTC . . . . AT . . TG . CT TG . . AAGACTATTTTTTG . G . . . . C . A TG A .
blockSeqs : . . TGCC . . . . AG . . TG . CT CA . . TAGACTGTTTA . A . . . . C . A T T .
blockSeqs : . . TAC . . . . GG . . TC . CT TA . . TCGA . G . . . . C . T . . .
blockSeqs : . . TAC . . . . AG . . TG . CT CA . . AAGA . G . . . . C . .
blockSeqs : . . C . . . . A . . T . CT CA . . . . . . . . . .
blockSeqs : . . C . . . . . . . A . . CA . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : CGC****** *** CG
originalCons : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--T--C--C---GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAAATCGCTATATTG
finalCons : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--TCGC------GC---AA-A---AA--TGTCAGGACTCTCCC---GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAAATCGCTATATTG
Alignments
lowQualScore : 2222222222222 1111111111111111111 33333333333333333333333 8888888888888888888888888888888888888888888888888888888888 11111
lowQualScore : 3 44 1111111111111 3 44 44 77 55555 2 3 33 666 5555555555555555555 22222222222222222222222 4 4 2222222222222222222222222222222222222222222222222222222222 22222 2 3 3 55 0 3 44 4 0 2 88 1 0 5 99 8 0 7
lowQualScore : . .. ............. . .. .. .. ..... . . .. ... ................... ....................... . . .......................................................... ..... . . . .. . . .. . . . .. . . . .. . . .
lowQualScore : 3 66 4444444444444 1 22 22 33 99999 9 3 55 444 4444444444444444444 55555555555555555555555 0 0 3333333333333333333333333333333333333333333333333333333333 77777 0 6 6 00 6 6 22 0 9 0 88 0 4 0 66 8 7 3
consensus : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--TC----G-C-GC---AA-A--A--A--TGTC---AGGACTCTCCC-GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAAATCGCTATATTG
Reference ( family-1119 ) : NNNNACAAGAAA-AACTTGATGCAAAGCATCAAT--TC----G-C-GC---AA-A--A--A--TGTC---AGGACTCTCCC-GAAGCATCGATTGAATA-GTTTGAT---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAG-AAA------NAGA--------CTG--------------T--------------CT----A-TTTT-----AGATCGAAATCCTCACT-AGAATTAT-AA--ACCAATCAAA-TC-TTGCTTACATCAA-GCATGTGTCCGACAGTGTAAACAAAGTGACAGTGCGCTATTTCTAAAATAAAT-GAATAAAAATGACGTTATTTAAAGTGAGAGAAATATTNTCTTATTCTTACAGCGTGCGGAAAATACACCGTACCGGCAAAATCGCTATATTG
gi|1 : AA-AACTTGATGCAAAGCATCAAT--TC----C-T-CC---AA-G--AGAA--TTTC---AGGACTCTCCC-GAAGCATCCATTGAATA-GTTTGAT---TCT---------CT--------TGAAT-----------CA----------ATCCATT-CAA
gi|1 : gACAAAGTGAT-----GATATTTCTAAAAAAAAT-GAATAAAGATATTGTTATTTAAAGTGAGAGAAATATTGTCTTATTCTTACAGTGGGCGGAAAATACACCATACCGGCAAAA---CTATggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaaagtgatgatatttctaaaaaaaatgaataaagatattgttatttaaagtgagagaaatattgtcttattcttacagtgggcggaaaatacaccataccggcaaaactatcg
gi|10 : gaaaacttgatgcaaagcatcaattcctccaagagaatttcaggactctcccgaagcatccattgaatagtttgattctcttgaatcaatccattcaaggacctatataatttctttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-----AGATCGCAATCCTCACT-AGAAT----------CAATCTTA-TC-TTGGTAAAATAAT-TCATATGTCCGACAGTATAAACA--------------------------AAAT-GAAGGAAAGTGACGTTATTTGAAGTGAAAGAAATATTCTCTAATTcg
gi|11 : ctatacaattccttgatccattgattatattattag-AACTGAATGCAGAGCAGCTAT--TC----G-CCGC---AATA--C--A--TTTC---AGGACTCTTCA-GAAGCA------------GTTT-AT---TCT---------AT--------ACCAT-----------CA----------ATTCATTGCAATATGTGTCCGG-AAA------C-GA--------CTG--------------T--------------t
gi|12 : CTG-CCAG-AAA------AAAA--------CTGAACTGATATGT---T--------------CT----AGTTTT-----AGATC-AAAT--TCATT-TTTGTTACCAACCACCAATCAAA-TTATCGCTTACATTAG-GAAAATGTCCGATAACATAAAaaatctgcaatcttatatttttag
gi|13 : A-AACTTAATGAAAAGCATCGAT--TT----A-C-GC---AA-A--A--A--TGTC--------TTTCCC-AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAAacgatagacag
gi|14 : tAGAAA-AACTTGATGCATAGAATCGAT--TC----G-CCGC---AA-GTTA--A--TGTC---AGGACTCTCCC-GAAGCATTGATTGAATA-
gi|15 : AAC-AGCTTGACGCAAAGCATCAAT--TC----G-C--CTA-AA-A--A--A--TGTC---AGGACTCTCCC-CAAGCCTCGATTGAATA-GTTCGAT---TCT---------CT--------Ttcgtcataaatcaacct
gi|16 : t--------------T--------------CT----A-TTTA-----AGATAGAAATCCTCACT-TGAACTGT-CA--ACCAATAAAACTA-TTCCTTACATCA
gi|17 : gtaaatgggcttgctgtatAGAAA-AACTTAATGCAAAGCATCAAT--TCA---A-C-ACAAAAA-A--A--A--TA-C---A-GACTATCCC-GAAGCATTGACTGAAT
gi|18 : A-AGCTTGATGCAAGCCATCAACAATC----GTC-GC---AA-T--A--A--TTTC---AGGACTCGCCT-GAAGCAT
gi|2 : gT--------TCC-T-----------TG----------ATTCATTGCATTCTCTG-ACAG-GAC------AAGAATATAAAGCTG-----------------------------CT----A-TCTTCTGTGAGATCTAAATCCTCACT-AGAATCAT-AA--ACCAATCAAA-TC-GTGCTTA-------GTATGCACCCGACAGTGTAAATAAAGTAACAGTGTTCTGGTTCTAAAATAG-T-GAATAAAATTGA-GTTATTTAAAGCGTGTGAAATGTCGTCTTATTCGTATAGCTTGCGGGAAATACACCACACCAGCAAAATCGC
gi|3 : agaaaaatgcaaagaaaatgtcaggtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatccacttaaggacctatattaACAAGATA-AACTTAATGAAAAGCATCGAT--TT----A-C-GC---AA-A--A--A--TGTC--------TTTCCC-AAAGCATCGATTGACTA-GTTAGAC---TCT---------CT--------TCCAT-----------CA----------ATCCATTGCAATCACTG-ACAG-AAA------TAGA--------CTG--------------T--------------TT----A-TTTT-----AGATCGAACTTTTCACT-AGAATTCT-AA--ACCAATCTAA-TC-TTGCTTACATCAA-GTATGTGTCCGGCAGTGTAAACAAAGTGACAGTGCGTTATTTCTAAGATAATT-GAATACAAATGACGTTATTTAAAGTGAAATAAATATTTTCGTGTTCTTACAGCGTGCGAAAAATACACCGTGCAGGCAAATTCGCTATATTG
gi|4 : tacgAAGAAA-GAC-------AAAGTTTCAAT--TC----G-C-AG---AA-A--A--T--TGTC---ATCACTCTCCC-GAAG-AGCAA------A-GTT-AAT----------------------------AT-----------TA----------TTCTATTGCATTTTCTG-CCAT-AA------------------------------------T--------------CG----A-TTTT-----AGAGCAAAATTCTAACT-ATTATTAT-AA--A-------------TTGCTTACATCAA-GCATGTGTCCGGCAGTGGTAACAA
gi|5 : gataaaaaACAAGAAA-AAGCTGATGCAAATCATCAAT--TTTTTTG-C-AA---AA-A--A--A--TCTCTACAAGA--------GAAGCATTGATTGAAAATGTTCCATCAGTCCATTCAAGTACC--------TCTAT-----------AATTTCTTG---ATCCATTGCAATCTCTG-CCAG-GAA------AAGA---------------------------------------------------T-----AAA----AATTCTCTCT-AGAATTAT-AA--ACCAATCGAA-TC-TTGTTTACATAAA-GCATGTTTCCGACAGTTTAAACAAAGTGACAGCGT-CTATTTCTTAAATAAACAAAACAAAAATGTGGTTATTTAAAGTAAGAGAAATATT-TCTTATTCtaaaaacataactacatcctaaataatattttaaactgcttgcatataatacgttttagtgaattgctttgtaagactaagtgcgtatatttttgatgctattacagaaacacgccgtcaggttcatttattg
gi|6 : ACAAGAAA-AACTTATTAAAAATAATGAA-------------AA---AA-A--A--A--TGTA---AGGACTCCCTC-AAAGCATTGATTGAATA-GTTTGAT---TCT---------CTTCCATCAATCCATTCAAGTACCTACATAATTCCTTGATCCATTGCAATCTCTG-ACAG-AAA------AAGA--------CTA--------------T--------------TTTTT-G-TTTA-----AGTTTGAAATCCTCACT-AGAATCCT-AA--AGCAATCAAA-TC-TTGCTTACATTAA-GTTTGTTTCCAACAGTGTAAACAAAGCGACAGTGCACTGTTTCTAAAATAAAC-G
gi|7 : gtAGAAACAACTTGGTGCAAAGCATCAGT--TT----G-CCAC---AA-A--A--AC-TGTC---GGGATTTTCCCCGAAGCATCAATTGAATA-CCTTGAT---TCT---------CT--------CCCAT-----------CA----------ATCCATTGCAATCTCTG-CCAGAAAA------AAGA--------CTGTAATTCTGCTATCTT--------------CT----G-TTTT-----AGATCAATATCCTCACTAAAAATTAT-AA--GCCAATCAAA-TC-TTGCTTACGTCAG-GCATGTGTCTGACAGTGTAAACATAGTGACAGT
gi|8 : -C-GC---AA-A--G--AAGTGTC---AGGACTCTCCC-GAAGCATCGATTGAATA-GTTTCAT---GCT---------CT--------TCGGC-----------CA----------TTGCATTGCAATCT----------GA------TAGA--------CTG--------------TTCATCTCGTATATTCC----A-TTTTC----AGATCGAAATCCTCACT-GAAATTAT-AG--ACCAGTCGAA-T---TGGTTACATCCA-GCATACGTCCGACAGTGTAAACACAACGAAAGTGCACTAGTTCTAAAATAAAT-GAA
gi|9 : TCCC-ATAGCATTGATTGAATA-GTTTGAT---TCT---------CT--------TTCAC-----------CA----------ATTCATTGCAATCTCTG-CTAA-AAATTACTGTAAATCTG----CTA--------------T--------------CTTCAAA-TTTT-----AGATAGAAATCCTCACT-AAAATTAT-AA--ACCAATCAAA-CC-TTGCTTACATCAAGGTAT-TATTTGACAGTGAAAATAAAGTGACTGTGTGCTTTTTCTAAAATAAAT-GAA