lowQualScore : 333 2 33333 3 1 9999999999999999999999999999 4444 11111 11 7777777777777777777777777777777777777 11 55555555555555 1 2222222222222222 1 33333333333 1 111111111 11111 1 1 77777777777777777777 111 22222 44444444444 1 11111
lowQualScore : 222 6 6 7 6 66666 4 3 3 6 1111111111111111111111111111 2222 99999 33 8888888888888888888888888888888888888 8 33 0 99999999999999 0 2 0 3 4444444444444444 6 11111111111 5 3 66 55 5 777 666666666 8888 8888 666 44444 3 5 1 1 1 1 33333 33333333333333333333 11 55 222 1 11 2222 555 333 2 22 11 2 1 55555 888 1 11 444 00000 11 6 1 55555555555 1 222 44 1 2 1 4 11 77 2 44444 5 1 5 4
lowQualScore : ... . . . . ..... . . . . ............................ .... ..... .. ..................................... . .. . .............. . . . . ................ . ........... . . .. .. . ... ......... .... .... ... ..... . . . . . . ..... .................... .. .. ... . .. .... ... ... . .. .. . . ..... ... . .. ... ..... .. . . ........... . ... .. . . . . .. .. . ..... . . . .
lowQualScore : 000 7 7 0 7 00000 2 5 2 5 8888888888888888888888888888 5555 22222 88 9999999999999999999999999999999999999 1 66 6 00000000000000 4 0 2 9 1111111111111111 2 77777777777 0 9 99 55 5 000 000000000 5555 5555 444 11111 9 4 1 5 4 4 66666 11111111111111111111 88 00 333 3 77 7777 999 333 4 99 77 4 2 99999 444 2 77 222 99999 77 1 2 77777777777 3 333 77 4 8 4 2 99 33 9 11111 9 5 4 0
consensus : NTTCTAGCTTTGGCGGCCTTTCTTTACCCATATTTGCATTCTTTTAACATGAACCAA-TAACCAANTATTTAATAAACTAC--------T-------NT---A---T--ATATATTA-AATAGAAAATAGTTTACTAGAGCTTAAG-TTAACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAAATGG--AATTT-CATTCATA-A--CTTGTTTATTGCATTGCTTTGTTAGAGTGAAAGAA--G--CATAACATGTAGAAGATACANATATTCC-----------AGTTTGTATTAAGTAGAA--GTAGC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAG-T--ATTTTCAGAACCATTTATAA-ATAAAAA-TAAG-GC-----CAAAG----C------ATTCAACA--A--A---AT-GCGTATATTT--GCAGAAA----AANN-GT--CA-T--T--T-T-T-----CT--T-A--T---TT--T-GGCGGCCAT--TTTGTCC-CTTATTTAGAC-TT--CTTGTT-GTACATGAAT---CAACCA--T-A-T-TTT--TA--C-T--TN-T-T-TTACCCTANCAC
Reference ( gi|4 ) : TTTCTAGCTTTGGATACCTTTCTT-ACACATATTTGCATTCTGTTAGAAT-AACCAAATAACCAAATATTTATTAAACTAC--------T-------GT---A---T--ATATAT----ATAGAAAATAGTTTATAAGAGCTTAACCATAACATATTCAATTGTA--TTTTACAGATT---ATATCTTAAAAATTG--AATTT-CGTTTATA----CTTGTTTATTGCGTTGCTTTGTTAGAGTGACAGAG--G--TATAGTGTGAAGAAGATACACATATTCC-----------AGTTTGTATTAAGGAGAA--GTAGC--AAAGTAT---A---------ATCCTGAAAC----AT----GTT---CAG-T--GTTCTCAGAACTATTTATTA-ATAAAAA-TAAG-GC-----CATAG----C------A-----CA--A--A---AT-GCGTATATTT--GCAGAAA----AACA-GT--CA-T--T--T-T-T-----CT--T-A--T---TT--A-AGCGGCCAT--TTTATCC-CTTATTTAGAC-TT-ACTTGTT-GTACATGAAT---CAACCA--T-A-T-TCT--TA--C-T--TA-T-T-TTACCATATCAC
gi|3 : TTCTAGCTTTGGTGACCTTTCTTTACACATATTTGCATTTTGTTAACAT-AACCAATTAACCAAATAT-----AAACTACATAGAAAAT-------AT---G---T--ATACAT----ATAGAA-------TATA-GATCTTAA--GT----TGTTCAGTTGTA--TGTT---------------TTAAAAATGG--ATTTTTCATATAAA----CGTGTTTATTGCATTGCTTTGTTAGAGTGAAAGAC--A--CACAACATAAAGAAAATACAACTATTTC-----------AGTGTGTATTAAGTAGAA--GTAAC---AAGAAT---A---------ATCCTTAAAC----AT----GTT---CAG-T--ATTCTCAGAACGATTTATAA-ATAAAAA-TAAG-AC-----TAAAG----C------ATT---CACCA--A---AT-GCGTATATTA--GCAGAAA----AAGT-GT--CA-T--T--T-T-T-----TT--TCA--TATGTT--G-A-CCACCAT--TTTGTCC-CTTTTTTAGAC-T----TTA-T-GTACATGAAT---CAA-CA--T-A-T-ATT--TA--T-TC-TA-T-A-TTAC
gi|2 : aatttgaaacatacataatagtcttaagaacttaacaaaatatgcatgcatattaatgaataaaagcacacccTTCTAGCTTTGGCGGCCTTT--T-ACCCATACTTGCATTCTTTTAACATGAACCAA-CAACCAACTATTTAATACATTAC--------T-------TT---AACAT--ATATATTACAATGGAAAATAGTTTACTAAAGCTGAAGTTTAACATA----GTTGTACTTTTTTCAGATT---ATATCGTAAAAAATG--AATTT----TCATAAA--CTTGTTT--TGCATTGCTTTGTTAGAGTGAAAGAT--G--CATAACGTATAGAAGATACA-ATATTTT-----------AGTTTCTATTAAGTAGAA--GTAGT--AAAGTAT---A---------ACCCTGAAAC----AT----GTT---CAA-T--TTTTTCAGAACCATTTATAA-ATAAAtttaaacca
gi|1 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaagcaaaatattgaaatttgaaacttacataaaagttatacagacgtttcagaaccaattaatcataaaaaaggtctcaagaatttaacaatagatatatgtgtgcacattccagcacattcTTCCAGTTTTGC-TGCCATTCTTTACCAATATTTGCATTCTTTTAATATGAATCAA-TAACTAAACTTTTAATAAACTGC--------T-------CTCAAA---T--ATATATTAAAATAGAAAAC--TTTATTAGAGCTTAA-------------------G--TTTTACA---T---CCATCTTA----TTGGTATTTT-CATCAAT------TTGTTTATTGCATTGCTTTGTTATAGTAATAAAAATG--TCTTATATGTAAACTATAAATATATTCC-----------AGTTTGTATTAAGCAGAT--GTAGC--AAA-TAT---A---------ATCCGGAAAG----GC----ATT---CA
gi|5 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaaaaatttaaacctgcatttatagacttgtcagaaccatttatttataaagatatgtcccaaaactttaacaatatgcatattcaagaataaaatcacattaTTA-AATGAACCAA-TAACCAGTTATTTAATAAGTTAC--------TCTAAAATGT---A---TGCATATTT----ATAGAATATAGTTTACTAGAGCTTAAGATTAACATATTAAGTTGCA--TTT-----ATTTCGAGATCTAAAAAATGG--AATTT---TTCATAGAAACCTGTTCATTACATTGCTTTGTTAGAGTGAAAGAA--G--CATAACGTGTAGAAGATACAGATATTCCTGGTCCAGACCAGTTTGTATTCAATAGAA--GTAGC--AAACTAT---A---------ATCCTTAAAC----AT----GTT---CAG-T--ATTTTTAGAACCGTTTACAA-ATAAAAA-TAAG-GC-----CAAAG----C------ATT---CA--A--GAACAT-GCGTATAATT--ACAGAA-----------T--TT-T--T--T-T-T-----TT--C-ATTT---TT--T-AGCGGCCAT--TTTGTCC-CTTA-TTAG------ACTTGTT-GTACATGAAT---CAACCA--T-C-T-GTT--TA--C-A--TAGT-T-TTACtcaa
gi|7 : tatTATTCATTTTTT--TTTTCAAGATT---ATATCTTAAAAATGGT-AGTTT-CATA-ATA-----TTGTTTATTGAGATGTTTTGTTTGAGTGAAAGAA--GCCTAAAATAT--AGAAGATtctaa
gi|8 : TCAGTTGTA--TTTTTAAGATT---TTATCTTTAAAATGG--AATTT----TCATAAA--TTTGTTTTTTGTGTTGCTTTGCTCGAGTGAAATAA--G--CTTAATATGTAGAAAATACATTTATTCC-----------GGTTTGT-------AGAA--GTAGC--AAAATAT---A---------GTTATGAAAC----AT----GTG---TAT-TACATTCCTGAAACC-TTTATCA-ATGAAA---AAT-GC-----CAAAGGAGTCA-----A-----CA--A--C---AT-GAATACATTT--GCAATCA----AACA-CC--CA-------T-A-T-----CT--T-A--T---TT--T-AGCGGTCAT--TTTGTTC-TTTATTCCGAT-TT--TTTGTgtcatcctgaaacatatctattactttctataaattaaagtaaggcaaaggtcttcaacaaattgcatatctttgcataaaatcactcatttttttcttatttttgtggtcattttgtcacttgtttgaatgttttgtgcatgtatcacccccatcttttatttgttttaccctgaaaa
gi|9 : TTATG--TTTTACGAGTT----TATCTTAAAAACGG--AACTT-T-TTTAAA----CTTATTTATAACATTGCTTTGTTCGATTAAAAGAA--A--CATAACATGTAGACGATACActttt
gi|6 : TTGTTTATTGCATAGTTTTGTTAGAATGAAAGAA--G--CATACC-TGCAAAAGATACAAATATTCA-----------AATTTGTATTAAACAGAA--GTAGC--AAAGTAC---A---------ATCCTGAAAT----AT----GTT---CTG-T--ATT-TTAGAATCATTTATCA-ATAAAAT-TAAG-GT-----TGAAG----CATTCA-A-----CA--A--A---AT-GC--ATATTT--AGAGAAA----AGCA-GT--TC-T--T--T-T-T-----CT--T-A--T---TTTCA-AGT--CCAT--TTTGTCC-CTTATTTGG------ATTTGTT-GTACATAGA---------A--C-A-T-T-T--TA--C-T--TG-TAT-TTACCATAatcagtattttcagaatcagttataaataaaaaatggtcaaagcttcaacaaaatgcgtatatttgcagaaaaaaataattgttcttattttatcccgtatttagacttgttgtacatgaatcaacacttgtttaa
gi|7 : taaaatatgtannnnnnnnnnTTTGT-TTGAGTGAAA--GAAGCCTAAAATAT---AGAAGATGTCATCCTGAAAC----AT----ATC---TA------TT------ACTTTCTATAA-ATTAAAG-TAAG-GC-----AAAGG----TCTTCA-A-----CA--A--A---TT-GCATATCTTT--GCATAAA----ATCA-CT--CA-T--TTTT-T-T-----CT--T-A--T---TT--T-TGTGGTCAT--TTTGTCA-CTTGTTTGAA---T-GTT--TT-GTGCATGTAT---CACCCC--C-A-TCTTT--TA--T-T--TG-T-T-TTACCgaaaca
gi|10 : tattcattttttttttcaagattatatcttaaaaatggtagtttcataatattgtttattgagatgtAAGAAGAACAATAG----AAATAT---A--------------GAAAC----AT----GCT---CAG-T--ATTTGCAGAACCATTTATGA-ATACAAA-TAGA-GC-----TAAAC----C------ATT---CA--ACTA---ATTGCGTATATTT--GCATAAA----AACG-GT--AA-T--T--T-T-T-----CT--T-A--T---TT----GGCGGCCAT--TTTGTCT-CTTATTTAG------ACTTGTT-GTACATGAAT---CAATCC--TCA-T-T-T--TA--C-T--TT-C-T-GTAACATActgaaaa
gi|2 : AGC--AAAATATTGAA---------ATT-TGAAACTTACATAAAAGTTATACAGAC--GTT-TCAGAACCAATTAATC-ATAAAAA---AG-GT-----CTCAA----G------AATT--TA--AC-A---AT-AGATATATGT--GTGCACATTCCAGCA-----CA-T--T--C-T-T-----CT--A-G--C---TT--T-GGCGGCC-T--TTTA-CC-CATACTTGCAT-T---CTT-TT-A-ACATGAACCAACAACCAACT-A-T-T-TAATA--CAT--TA-C-T-TTAACATATa
gi|1 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcaca--AAAATTT---A---------AACCTG---C----AT----TTA---TAG-A--CTTGTCAGAACCATTTATTT-ATAAAGA-TATGTCC-----CAAAA----CTTTA--A-----CA--A--T---AT-GC--ATATTCAAGAATAAA----ATCA-----CA-T--T--A-T-T-----CC--A-G--T---TT----TGCTGCCATTCTTTA-CC-AATATTTGCAT-T---CTT-TT-A-ATATGAAT---CAAatattacaatggaaaatagtttactaaagctgaagtttaacatagttgtacttttttcagattatatcgtaaaaaatgaattttcataaacttgttttgcattgctttgttagagtgaaagatgcataacgtatagaagatacaatattttagtttctattaagtagaagtagtaaagtataaccctgaaacatgttcaattttttcagaaccatttataaataaa
gi|9 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaT---CAG-T--ATTTTCAGAATCAGTTATAA-ATAAAAA--ATG-GT-----CAAAG----CTTCA--A-----CA--A--A---AT-GCGTATATTT--GCAGAAA----AA-A-AT--AA-T--T--G-T-T-----CT--T---------------------AT--TTTATCC-CGTATTTAG------ACTTGTT-GTACATGAAT---CAACtaactaaacttttaataaactgctctcaaatatatattaaaatagaaaactttattagagcttaagttttacatccatcttattggtattttcatcaatttgtttattgcattgctttgttatagtaataaaaatgtcttatatgtaaactataaatatattccagtttgtattaagcagatgtagcaaatataatccggaaaggcattcatcaa
gi|11 : ttatgttttacgagtttatcttaaaaacggaacttttttaaacttatttataacattgctttgttcgattaaaagaaacataacatgtagacgatacaaTTTATAA-ATAAGAA-TAAA-GC-----CAAAG----C------ATTCGGCG--A--A---AT-GAGTATATTT--GTAGAAA----AAAG-GT--CA-T--T--TCT-T-----CA--T-A--T---TT--T-GGCGGCCAT--TTTGTCC-CTTATTTAGAC-TT---T--TT-GTACATGTAT---CAACCA--T---T-GTT--TAT-C-T--CA-T-TATTATCCTAacttgtttaa
gi|18 : TTTATAA-ACAAAAC-TAGG-GC-----AAAAA----C------ATTCAACA--A--A---AT-GCG-ATATTT--GCTGTAA----AAGT-GT--AT-T--T--T-T-T-----CA--T-A--T---TT--A-A-CGGCCAT--TTTAATC-CTTATTTAG------ACTTGTT-GTACTTAAAT---CCACCA--T-A-G-CTT--TG--C-T--CATT-T-TTACCCTAACACaaacat
gi|26 : TTTTTCA-ATAAAAG-TAAG-AC-----CAAAG----C------ATTCAACA--A--A---AT-GAGTAT--TT--GCAGAAA----AAAA-GTG-TA-T--T--T-T-T-----TTCAT-A--T---TT--T-GGCGGCCAT--AAGATCC-CTTATTTAAAC-TT---TTTTT-G--CTTAAAT---CAACCA--C-A-T-TTT--T
gi|13 : TTTATAA-ATAAAAA-TAAG-GC-----AAAAG----C------ATTAAACA--A--A---AT-GAGTATATTT--GCCAAAA----AAT--GT---A-T--T--T-T-T-----TTTAT-A--T---TT--T-GGCAGCCAT--TTTGTGC-CTCATTGAGA--TT-GATTGTTCTTATAT--------AACCA--T-A-A-TTT--TA--T-TC-TA-T-T-TTACCtacc
gi|16 : TTATAA-ATAAAAAATAAA-GC-----CAAAG----CTTTCA-A-----CA--A--A---AT-GTGTATATTT---CAGTAA----AAGT-GT--AA-TG-T--T-T-T-----CA--T-A--T---TT--T-GGAGGCCAT--TTTGTCC-CTTATTTAGAC-TT---T--TT-GTATTTATAT---CAA-CA--T-ATT-TTT--TA--C-TC-TT-T-T-TTACCCTActtcaaca
gi|15 : TTATGA-ATATATA-TACG-GCAAAATCAT-T----C------A-----CC--A--A---AT-GCGTTTATTT--ACGGCAA----AAGT-AT--CA-T--T--T-T-T-----CA--T-A--T---TT--T-GGCTGTTAT--TTTGCCC-CTTGTTTAGAC-TTCA-----T-GTACATAAAT---CAACCA--T-A-T-T-T--CA--C-TGCT--T-T-TTACCCTAaaa
gi|22 : TATAA-ATAAAAA-TAAG-AC-----CAAAG----C------ATTCAACA--A--A---AT-GTGTATATTT--GCAGAAA----A--A-GC--CA-T--T--T-T-TTCATATT--T-T--T---TT--A---TGGCCAT--TTTGTCC-CTTATTTCAAC-TT---T--TT-GTACTTAAAT---CAACCA--C-A-T-TTT--TA--CTT--TA-T-T-TTACCaaacat
gi|19 : TATAA-ATAAATA-TAAG-GC-----CAAAA----C------ATTCAACA--A--A---AT-GCGTATATTT--GCAG-AA----AACG-GT--TA-T--T--T-TGT-----CA--T-A--T---GC--A-GGCGGCCAT--TTTGTCC-CTTATTTAGACGTT------TT-GTACATTAAT---CAA-TA--T-C-T-GTT--TA--C-T--CG-TAT-TTACCATAggaa
gi|24 : TATAA-ATAAAAA-TAAG-GT-----CAAAG----C------ATTCAACA--A--A---AT-GCGTATATTT--GCAGAAA----TAGT-GT--CA-T--T--T-T-T-----CA--T-A--T---TT--T-GGCAGTCAT--TTTGTCC-CTTATTTA-AC-TT----------TATATACTT---CAACTA--T-A-C-TTT--TA--C-TC-TT-T-C-TTACCCTAaaaca
gi|14 : TATAA-ATAAATA-TACG-GC-----CAAAG----C------ATTTA-CC--A--A---AT-GCGTATATTT--CCAAGAA----AGT--GT--CA-TGTT--T-T-T-----CA--T-A--T---TT--T-GGCTGTCAT--TTTGTCC-CTAATTTAGAC-T----TTA-T-GTACATGAAG---CAACCA--T-A-T-ATT--TA--C-TC-TC-T-G-TTACCCTAaaca
gi|12 : TATAA-ATAAAAT-TAAA-CC-----CAAAA----C------ATTCCACA--A--A---AT-GAGTATATTT--GCAGAAA----TAGT-GT--CATT--T--T-T-T-----CA--T-A--T---TT--T-TGCGACCAT--TTTGACC-CTAATTTAGAC-TT---TT-TT-GTAAACAAAT---CAACTA--T-A-T-TTT--TATTC-T--TA-T-C-Taaaca
gi|17 : ATAA-ATGAAAA-TAAG-CC-----CAAAT----C------ATTTAACA--A--G---AT-ACATATATTT--GCAGAAA----AATT-GT--CA-T--T--T-T-TT----CT--T-A--G---TT--T-GGCGGCCAT--TTTGTCC-CTTATTTAG------ACTTGTT-GTACATGAAT---CAACCAT-T-A-T-T-T--TA--C-T--CG-T-T-TTatcctaaaacgt
gi|21 : TTAGATAAAAT-TAAG-GC-----CAAAG----C------ATTCAACA--A--A---AT-GTGTTTTTTT--GCAGAAA----AAGT-GT---A-T--T--T-T-T-----TT--C-A--TAATTT--G-A-CAGTCAT--TTTGTCC-CTTATTTAGAC-TT------TT-TAACTTGAAT---CTACCA--T-AGT-TTT--TA--T-T--TT-TAT-TTACCCTAtaacctaaaat
gi|36 : ttTA-ATAAAAA-TAGG-GC-----CAAAA----C------ATTCAACA--A--A---AT-GAGTATATTT--ACAGAAA----AAa
gi|20 : taA-ATACAAA-TAAG-CC-----CA-AG----TCTTTTAA-----CA--A--A---AT-ACATATATTT--GCAGAAA----AATG-GC--CA-T--T--T-T-TTT---CT--T-A--G---TT--T-GGCGGCCAT--TTTGTCC-CTTATTTAG------ACTTGTT-GTACACGAAT---CAACTAT-T-A-C-T-T--TA--C-T--CA-T-T-TT
gi|23 : acaA-ATAAAAA-TAAG-GC-----CAAAG----T------ATTCAACG--A--A---AT-AAATATATTT--GCGGGAA----AAGT-GT--CA-T--T--T-T-T-----CA--T-A--T---TT--T-GGCGGCCAT--TTTGTCC-CTTATTTAGAC-T---CTT-TT--TACTTGAAT---CAACCG--T-A-T-TTT--TATTC-T--T--T-T-TTACCCTAtaacctaaaa
gi|35 : A-ATAAATA-TACG-GC-----CAAAG----T------ATT---CA--ACAA---AT-GCGTATATAT--GCAGAAA----AAGT-GT--CATT--T--T-T-T-----CA--T-A--T---TT--T-GGCTGTCAT--TTTGTCaaaca
gi|29 : tgtaAAAAA-TAAG-GC-----CAAAG----C------ATTCAACA--A--A---AT-GCTTATACTT--GCAGAAA----AAGT-GT---A-T--T--T-T-T-----TTTAT-A--T---TT--T-GGTCGCCAT--TTTGTCCATTTA-TTA-----T-ACTTTTT-GT-------T---CTACCA--T-G-T-TTT--TA--C-
gi|25 : AAA-CAAG-AT-----CAAAG----C------ATTCAACA--A--A---AT-GCGTATATTT--GCAGAAA----AACA-GT--CA-T--T--T-T-T-----CT--T-A--T---TT--T-GGCGTCCAT--TTTTTCC-CTTATTTAG------ACTTGTT-GTACATGAAT---CAACCT--T-A-T-TTT--TA--C-T--TC-T-T-TTATCATAcctaca
gi|28 : c------A-----CA--C--A---AT-GCGTATATTT--GCAGAAA----AAAG-GTGTTT-T--T--T-T-T-----CT--T-A--T---TT--T-GGAGGTCAT--TTT-TCC-CTTA----GAT-GA-ACTTGCT-GTACATGAAT---CAACAA--T-T-T-GTT--CA--C-T--TG-T-T-TTaaac
gi|27 : gcattca------A-----CA--A--G---TT-AAGTGTATTT--ACAGTAA----A-CG-GA--CA-A--T--T-T-T-----CA--T-A--T---TT--T-GGCGACCAT--TTTGTCC-TTTATTTAGAC---------TT-GTACTTGAAG---CA------------CTT--TA--C-T--TACT-T-TTCCCGTAtacactaaac
gi|31 : tttaatataccgaagcattcaATATTT--G-AGAAA----AATT-GA--CA-T--T--TAT-T-----CT--A-A--T---TT--A-AGCGCCCAA--TTT-TCC-CTTACTT-GAA-TT--CTT-TT--TACACGAAC---CAAGCA--T-C-T-TTT--T---C-T--TT-TAT-CTGCCATAaaag
gi|30 : cT--GCAGAAA----A-CGTGT--CA-T--T--T-T-T-----TTCAT-A--T---TT--C-GTCGGCCAT--TTTGTCC-CTTCTTTAAAC-TT---TT-TT--TACTTGAAC---CATCCA--T-A-T-TTT--TA----T--TA-T-T-TTaacac
gi|33 : ta-GT--CG-T--T--T-T-T-----CA--G-A--T---TT--GTATCAGCCAT--TT-GTCG-CTTATTTGGAC-TT---T--TT-ATACATTAAT---CAGCTA--T-G-T-T-T--TA--C-T--CT-T-T-TTAttagccttaaacat
gi|34 : gt-T--T--T-T-T-----CA--T-A--T---TT--T-GGCTCTCAT--TTTGTCC-TTAATTCAGAC-TT----TAT--GTACATGAAT---CAACCA--T-A-G-TTT--TACCC-T--TT-T-T-TTATCCTAttcttaactat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|32 ): ATTCATCTTGTTTGCATTTTAATTTTGTCCAGAAGTGTTTGCCATCAATGAAAAATCATTCAGTTTATACAGAATTGTATATAAACATATTAAA
Unaligned ( gi|37 ): ACATGAATCAACCATATATTTTCTCTTTTTTTTACCTT
Alignments
lowQualScore : 1 111 555555555 11 222222 222222222222 11111111111 4444444444444444 22222222222 1111 22222222222 111111111 1111 2222222222 1111
lowQualScore : 555 2 3 2 0 8 0 000 1 0 1 11 999999999 11 999999 55 1 999999999999 0 66 88888888888 0 55 0000000000000000 4 4 1 11111111111 0000 33333333333 777 2 55 44 44 555 333333333 2 7777 7777 555 7777 1 1 1 2222 1 7777 22 66 1 2 22 11 0000 11 22 1 1 1 5555555555 1 222 222 11 444 11 1 33 4 4444 7 1 1 88
lowQualScore : ... . . . . . . ... . . . .. ......... .. ...... .. . ............ . .. ........... . .. ................ . . . ........... .... ........... ... . .. .. .. ... ......... . .... .... ... .... . . . .... . .... .. .. . . .. .. .... .. .. . . . .......... . ... ... .. ... .. . .. . .... . . . ..
lowQualScore : 222 5 2 5 6 2 0 000 0 8 0 88 000000000 00 000000 88 4 888888888888 7 99 55555555555 4 44 2222222222222222 4 4 4 11111111111 0000 88888888888 000 7 00 66 22 888 333333333 5 1111 1111 888 7777 4 4 3 6666 2 4444 00 33 2 4 88 66 7777 66 88 2 2 2 6666666666 2 222 222 88 666 88 3 22 1 4444 1 4 7 55
consensus : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTACTNT---AAAA--TAT--ATATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAAATGG-AATTT--TTCAT---A---A-CTTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-AAA--GTGT-CA--T-TT-T--T--CN---TA--T--TT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCCT-AAAAC
Reference ( family-1091 ) : NTTCTAGCTTTGGCGGCCTTTCTTTACCCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAANTATTTAATAAACTACTNT---A-----TAT--ATATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAAATGG-AATTTCATTCAT---A---A-CTTGTTTATTGCATTGCTTTGTTAGAGTGA-AAGAA-GCATAACATGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-AAA--NNGT-CA--T-TT-T--T--CT---TA--T--TT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCCT-ANCAC
gi|1 : --AAAATTT---A---------AACCTG---C----AT----TTA---TAGACT----TGTCAGAACCATTTATTTATAAAGA-TATGTCCC-AAAAC-TTTAACAATATGC--ATATTCA-AGA----ATAAA--ATCA-CA--T-TA-T--T--CC---AG--T--TT-T-GCTGCCATTCTTTACC-AATATTTGCA--TT-CTT-TT-A-ATATGAAT---CAATAACTA--AA-C-T--T-TTA--
gi|1 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaTTCCAGTTTTG-CTGCCATTCTTTACCAATATTTGCATTCTTTTAATATGAATCAA-T-AACTAAACTTTTAATAAACTGCTCTCAAA-----TAT--ATATTAA-AATAGAAAAC--TTTATTAGAGCTTAAG-----------------------TTTTACA---T---CCATCTT---ATTGG-TATT---TTCATC--A---A-TTTGTTTATTGCATTGCTTTGTTATAGTAATAAAAATGTCTTATATGTAAACTAT-----------AAATA--TATTCC-----------AGTTTGT---ATTAAGCAGAT--GTA--GC---AAATAT---A---------ATCCGGAAAG----GC----ATT---CAataaactgctctcaaatatatattaaaatagaaaactttattagagcttaagttttacatccatcttattggtattttcatcaatttgtttattgcattgctttgttatagtaataaaaatgtcttatatgtaaactataaatatattccagtttgtattaagcagatgtagcaaatataatccggaaaggcattcatcaa
gi|10 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaaaaatttaaacctgcatttatagacttgtcagaaccatttatttataaagatatgtcccaaaactttaacaatatgcatattcaagaataaaatcacattaAAGAAGAACAATA--G----AAATAT---A--------------GAAAC----AT----GCT---CAGTAT----TTGCAGAACCATTTATGAATACAAA-TAGA-GCT-AAACCATTCAACTAATTGCGTATATTTGCATA----A-AAA--CGGT-AA--T-TT-T--T--CT---TA-----TT-TGGCGGCCATTTTGT-CT-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AATCC--TC-A-T--T-TTA--C-T-T-TC-T-GTAtcaa
gi|11 : TTTATAAATAAGAA-TAAA-GCC-AAAGCATTCGGCGAAATGAGTATATTTGTAGA----A-AAA--AGGT-CA--T-TTCT--T--CA---TA--T--TT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-T---TT-GTACATGTAT---C---AACCA--T--T-G--T-TTAT-C-T-C-AT-TATTATCCT-AAAACacataa
gi|12 : TATAAATAAAAT-TAAA-CCC-AAAACATTCCACAAAATGAGTATATTTGCAGA----A-ATA--GTGT-CAT-T-TT-T--T--CA---TA--T--TT-TTGCGACCATTTTGA-CC-CTAATTTAGAC-TT-TT--TT-GTAAACAAAT---C---AACTA--TA-T-T--T-TTA--T-T-C-TTAT-CTATCCT-AAAACat
gi|13 : TTTATAAATAAAAA-TAAG-GCA-AAAGCATTAAACAAAATGAGTATATTTGC-CA----A-AAA--ATGT--A--T-TT-T--T--TTTA-TA--T--TT-TGGCAGCCATTTTGT-GC-CTCATTGAGAT-TG-ATTGTTCTTATAT-----------AACCA--TA-A-T--T-TTA--T-TCT-AT-T-TTACCCT-gt
gi|14 : TATAAATAAATA-TACG-GCC-AAAGCATTT-ACCAAATGCGTATATTTCCA-A----G-AAA--GTGT-CATGT-TT-T--T--CA---TA--T--TT-TGGCTGTCATTTTGT-CC-CTAATTTAGAC-T---TTA-T-GTACATGAAG---C---AACCA--TA-T-A--T-TTA--C-TCT-CT-G-TTACCCT-AAAACtcaaca
gi|15 : TTATGAATATATA-TACG-GCA-AAATCATTCACCAAA-TGCGTTTATTTACGGC----A-AAA--GTAT-CA--T-TT-T--T--CA---TA--T--TT-TGGCTGTTATTTTGC-CC-CTTGTTTAGAC-TT-C---AT-GTACATAAAT---C---AACCA--TA---T--T-TCA--C-TGC-TT-T-TTACCCT-AAAACa
gi|16 : TTATAAATAAAAAATAAA-GCC-AAAGCTTTCAACAAAATGTGTATATTT-CAGT----A-AAA--GTGT-AA--TGTT-T--T--CA---TA--T--TT-TGGAGGCCATTTTGT-CC-CTTATTTAGAC-TT-TTTG-T-ATTTAT--AT---C---AA-CA--TATT-T--T-TTA--C-TCT-TT-T-TTACCCT-Aat
gi|17 : ATAAATGAAAA-TAAG-CCC-AAATCATTTAACAAGATACATATATTTGCAGA----A-AAA--TTGT-CAT-T-TT-T--T--CT---TA--G--TT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TT-A-T--T-TTA--C-T-CGTT-T-TTAACCT-Aaaa
gi|18 : TTTATAAACAAAAC-TAGG-GCA-AAAACATTCAACAAAATGCG-ATATTTGCTGT----A-AAA--GTGT--A--T-TT-T--T---T---CA--TA-TT-TAACGGCCATTTTAA-TC-CTTATTTAGA-----CTTGTT-GTACTTAAAT---C---CACCA--TA-G-C--T-TTG--C-T-CATT-T-TTACCCT-AACACaaat
gi|19 : TATAAATAAATA-TAAG-GCC-AAAACATTCAACAAAATGCGTATATTTGCAG-----A-AAA--CGGT-TA--T-TT-TG-T--CA---TA--T--GC-AGGCGGCCATTTTGT-CC-CTTATTTAGACGTT-----TT-GTACATTAAT---C---AA-TA--TC-T-G--T-TTA--C-T-C-GTAT-TTACCAT-AAAAC
gi|2 : A--GC--AAAATATTGAA---------ATT-TGAAACTTACATAAAAGTTATACAGACG----TTTCAGAACCAATTAATCATAAAAA---AG-GTCTCAAGAATTTAACAATAGATATATGTGTGCACATTCCA-GCA-------CA--T-TC-T--T--CT---AG--C--TT-TGGCGGCC-TTTTA--CC-CATACTTGCA--TT-CTT-TT-A-ACATGAACCAAC---AACCAACTA-T-T--TAATA--CAT-T-AC-T-TTAa
gi|2 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaTTCTAGCTTTGGCGGCCTTT---TACCCATACTTGCATTCTTTTAACATGAACCAA-C-AACCAACTATTTAATACATTACTTT---AACA--TAT--ATATT-ACAATGGAAAATAGTTTACTAAAGCTGAAG-T-TTAACATA----GTTGTACTTTTTTCAGATT---ATATCGTAAAAAATG-AATTT---TCAT---A---AACTTGTTT--TGCATTGCTTTGTTAGAGTGA-AAGAT-GCATAACGTATAGAAGAT-----------ACA-A--TATTTT-----------AGTTTCT---ATTAAGTAGAA--GTA--GT--AAAGTAT---A---------ACCCTGAAAC----AT----GTT---CAATTT----TTTCAGAACCATTTATAAATAAAacatatatattacaatggaaaatagtttactaaagctgaagtttaacatagttgtacttttttcagattatatcgtaaaaaatgaattttcataaacttgttttgcattgctttgttagagtgaaagatgcataacgtatagaagatacaatattttagtttctattaagtagaagtagtaaagtataaccctgaaacatgttcaattttttcagaaccatttataaataaa
gi|20 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaagcaaaatattgaaatttgaaacttacataaaagttatacagacgtttcagaaccaattaatcataaaaaaggtctcaagaatttaacaatagatatatgtgtgcacattccagcacattcACAAATACAAA-TAAG-CCC-AAGTCTTTTAACAAAATACATATATTTGCAGA----A-AAA--TGGC-CA--T-TT-T--TTTCT---TA--G--TT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACACGAAT---C---AAC----TA-T-TACT-TTA--C-T-CATT-T-TTAACCT-A
gi|21 : TTT-TAGATAAAAT-TAAG-GCC-AAAGCATTCAACAAAATGTGTTTTTTTGCAGA----A-AAA--GTGT--A--T-TT-T--T--TT---CA--TAATT-TGACAGTCATTTTGT-CC-CTTATTTAGAC-TT-TTTA-----ACTTGAAT---C---TACCA--TAGT-T--T-TTA--T-T-T-TTAT-TTACCCT-Aaaa
gi|22 : TATAAATAAAAA-TAAG-ACC-AAAGCATTCAACAAAATGTGTATATTTGCAGA----A-AAA----GC-CAT-T-TT-T--T--CA---TATTT--TT-TTATGGCCATTTTGT-CC-CTTATTTCAAC-TT-T---TT-GTACTTAAAT---C---AACCA--CA-T-T--T-TTA--CTT-T-AT-T-TTACCa
gi|23 : AATAAAAA-TAAG-GCC-AAAGTATTCAACGAAATAAATATATTTGCGGG----A-AAA--GTGT-CA--T-TT-T--T--CA---TA--T--TT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC--T-CTT-TT--TACTTGAAT---C---AACCG--TA-T-T--T-TTA--T-TCT-TT-T-TTACCCT-AAAACggaa
gi|24 : TATAAATAAAAA-TAAG-GTC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-ATA--GTGT-CA--T-TT-T--T--CA---TA--T--TT-TGGCAGTCATTTTGT-CC-CTTATTTA-AC-TT---------TATATACTT---C---AACTA--TA-C-T--T-TTA--C-TCT-TT-C-TTACCCT-Aa
gi|25 : AAA-CAAG-ATC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-AAA--CAGT-CA--T-TT-T--T--CT---TA--T--TT-TGGCGTCCATTTTTT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCT--TA-T-T--T-TTA--C-T-T-CT-T-TTATCAT-AAAACaaca
gi|26 : cTTTTTCAATAAAAG-TAAG-ACC-AAAGCATTCAACAAAATGAG--TATTTGCAGA----A-AAA--AAGTGTA--T-TT-T--T--TTCA-TA--T--TT-TGGCGGCCATAAGAT-CC-CTTATTTAAAC-TT-TTT-TT-G--CTTAAAT---C---AACCA--CA-T-T--T-TT
gi|27 : CC-GAAGCATTCAACAAGTTAAGTGTATTTACAGT----A-AA---CGGA-CA--A-TT-T--T--CA---TA--T--TT-TGGCGACCATTTTGT-CC-TTTATTTAGAC--------TT-GTACTTGAAG---C---A-----------C--T-TTA--C-T-T-AC-T-TTTCCCtacc
gi|28 : tttaatataGCATTCAACACAATGCGTATATTTGCAGA----A-AAAAGGTGT-TT--T-TT-T--T--CT---TA--T--TT-TGGAGGTCATTTT-T-CC-CTTAGATGAA-----CTTGCT-GTACATGAAT---C---AACAA--TT-T-G--T-TCA--C-T-TGTT-T-TTACACT-Agtaaaag
gi|29 : AAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCTTATACTTGCAGA----A-AAA--GTGT--A--T-TT-T--T--TTTA-TA--T--TT-TGGTCGCCATTTTGT-CCATTTA-TTATAC-TT-TTTGTT-CT----------------ACCA--TG-T-T--T-TTA--C-aac
gi|3 : TTCTAGCTTTGGTGACCTTTCTTTACACATATTTGCATTTTGTTAACAT-AACCAA-TTAACCAAATAT-----AAACTAC-AT---AGAAAATAT--GTAT--A-CATATAGAATA------TAGATCTTAAG-T-T-G-----TTCAGTTGTA--TGTT---------------TTAAAAATGG--ATTT--TTCATATAA---A-CGTGTTTATTGCATTGCTTTGTTAGAGTGA-AAGAC-ACACAACATAAAGAAAAT-----------ACAAC--TATTTC-----------AGTGTGT---ATTAAGTAGAA--GTA--AC--AAGA-AT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TCTCAGAACGATTTATAAATAAAAA-TAAG-ACT-AAAGCATTC-ACCAAATGCGTATATTAGCAGA----A-AAA--GTGT-CA--T-TT-T--T--TTTCATA--T--GT-TGACCACCATTTTGT-CC-CTTTTTTAGAC-T---TTA-T-GTACATGAAT---C---AA-CA--TA-T-A--T-TTA--T-TCT-AT-A-TTACTTT-Acctaca
gi|30 : aatttgaaacatacataatagtcttaagaacttaacaaaatatgcatgcatattaatgaataaaagcacacccTGCAGA----A-AAC--GTGT-CA--T-TT-T--T--TTCA-TA--T--TT-CGTCGGCCATTTTGT-CC-CTTCTTTAAAC-TT-TTT-T---TACTTGAAC---C---ATCCA--TA-T-T--T-TTA--T-TAT-TT-T-TTAGCCT-aacca
gi|31 : taATATTTG-AGA----A-AAA--TTGA-CA--T-TTAT--T--CT---AA--T--TT-AAGCGCCCAATTT-T-CC-CTTACTT-GAA-TT-CTT-TT--TACACGAAC---C---AAGCA--TC-T-T--T-TT---C-T-T-TTAT-CTGCCATAAACACtaaacat
gi|33 : cGT-CG--T-TT-T--T--CA---GA--T--TTGTATCAGCCATTT-GT-CG-CTTATTTGGAC-TT-T---TT-ATACATTAAT---C---AGCTA--TG---T--T-TTA--C-T-C-TT-T-TTATTCT-
gi|34 : gt--T-TT-T--T--CA---TA--T--TT-TGGCTCTCATTTTGT-CC-TTAATTCAGAC-T---TTA-T-GTACATGAAT---C---AACCA--TA-G-T--T-TTACCC-T-T-TT-T-TTATCCT-Ataactat
gi|35 : catTGTAAATAAATA-TACG-GCC-AAAGTATTCAACAAA-TGCGTATATATGCAGA----A-AAA--GTGT-CAT-T-TT-T--T--CA---TA--T--TT-TGGCTGTCATTTTGT-Caac
gi|36 : TATAA-TAAAAA-TAGG-GCC-AAAACATTCAACAAAATGAGTATATTTACAGA----A-AAA--
gi|4 : TTCTAGCTTTGGATACCTTTCTT-ACACATATTTGCATTCTGTTAGAAT-AACCAAAT-AACCAAATATTTATTAAACTACTGT---A-----TAT--ATAT-----ATAGAAAATAGTTTATAAGAGCTTAAC-CAT-AACATATTCAATTGTA--TTTTACAGATT---ATATCTTAAAAATTG-AATTTCGTTTAT---A-----CTTGTTTATTGCGTTGCTTTGTTAGAGTGA-CAGAG-GTATAGTGTGAAGAAGAT-----------ACACA--TATTCC-----------AGTTTGT---ATTAAGGAGAA--GTA--GC--AAAGTAT---A---------ATCCTGAAAC----AT----GTT---CAGTGT----TCTCAGAACTATTTATTAATAAAAA-TAAG-GCC-ATAGC-----ACAAAATGCGTATATTTGCAGA----A-AAA--CAGT-CA--T-TT-T--T--CT---TA--T--TT-AAGCGGCCATTTTAT-CC-CTTATTTAGAC-TTACTTGTT-GTACATGAAT---C---AACCA--TA-T-T--C-TTA--C-T-T-AT-T-TTACCAT-ATCAC
gi|5 : tTTTAA-ATGAACCAA-T-AACCAGTTATTTAATAAGTTACTCT---AAAATGTATGCATATT-T-A-TAGAATATAGTTTACTAGAGCTTAAGAT-T-AACATATTAAGTTGCA--TTT-----ATTTCGAGATCTAAAAAATGG-AATTT--TTCAT---AGAAA-CCTGTTCATTACATTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACAGA--TATTCCTGGTCCAGACCAGTTTGT---ATTCAATAGAA--GTA--GC--AAACTAT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TTTTAGAACCGTTTACAAATAAAAA-TAAG-GCC-AAAGCATTCAAGAACATGCGTATAATTACAGA----A-------TTT-TT--T-TT-T--T--CA---TT--T--TT-TAGCGGCCATTTTGT-CC-CTTA-TTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TC-T-G--T-TTA--CAT-A-GT-T-TTACTCT-A
gi|6 : taTTGTTTATTGCATAGTTTTGTTAGAATGA-AAGAA-GCATACC-TGCAAAAGAT-----------ACAAA--TATTCA-----------AATTTGT---ATTAAACAGAA--GTA--GC--AAAGTAC---A---------ATCCTGAAAT----AT----GTT---CTGTAT----TTT-AGAATCATTTATCAATAAAAT-TAAG-GTT-GAAGCATTCAACAAAATGC--ATATTTAGAGA----A-AAG--CAGT-TC--T-TT-T--T--CT---TA--T--TT-TCAAGTCCATTTTGT-CC-CTTATTTGGA-----TTTGTT-GTACATAGAA---C---A-----------T--T-TTA--C-T-T-GTAT-TTACCAT-Aa
gi|7 : taaaatatgtannnnnnnnnnTATTCATTTTTT--TTTTCAAGATT---ATATCTTAAAAATGGTAGTTTCAT-AAT---A------TTGTTTATTGAGATGTTTTGTTTGAGTGA-AAGAA-GCCTAAAATATAGAAGATGTCATCCTGAAACATATCTATTAC-------------TTTCT---ATAAATTA-AA--GTAAGGC--AAAgaaaca
gi|7 : TTTGT----TTGAGTGAAA--GAA--GCCTAAAATAT---AGAAGATGTCATCCTGAAAC----AT----ATC---TATTAC----TTTC---------TATAAATTAAAG-TAAG-GCA-AAGGTCTTCAACAAATTGCATATCTTTGCATA----A-AAT--CACT-CA--T-TT-TTTT--CT---TA--T--TT-TTGTGGTCATTTTGT-CA-CTTGTTTGAA---T-GTT-TT-GTGCATGTAT---C---ACCCC--CA-TCT--T-TTA--T-T-T-GT-T-TTACCCT-ggtcttcaacaaattgcatatctttgcataaaatcactcatttttttcttatttttgtggtcattttgtcacttgtttgaatgttttgtgcatgtatcacccccatcttttatttgttttaccctgaaaa
gi|8 : tattcattttttttttcaagattatatcttaaaaatggtagtttcataatattgtttattgagatgtTCAGTTGTA--TTTTTAAGATT---TTATCTTTAAAATGG-AATTT---TCAT---A---AATTTGTTTTTTGTGTTGCTTTGCTCGAGTGA-AATAA-GCTTAATATGTAGAAAAT-----------ACATT--TATTCC-----------GGTTT----------GTAGAA--GTA--GC--AAAATAT---A---------GTTATGAAAC----AT----GT------GTATTACATTCCTGAAACCTTTATCAATGAAA---AAT-GCC-AAAGGAGTCAACAACATGAATACATTTGCAAT----C-AAA--CACC-CA-----T-A--T--CT---TA--T--TT-TAGCGGTCATTTTGT-TC-TTTATTCCGAT-TT-TTTGTgaaaa
gi|9 : TTATG--TTTTACGAGTT----TATCTTAAAAACGG-AACTTT-TTTA----A---A-CTTATTTATAACATTGCTTTGTTCGATTAA-AAGAA-ACATAACATGTAGACGAT-----------ACActttt
gi|9 : TTTGTTCGATTAAA-AGAA--ACA---T--AACATGT---A---------GAC--GATAC----AA------T---CAGTAT----TTTCAGAATCAGTTATAAATAAAAA--ATG-GTC-AAAGC-TTCAACAAAATGCGTATATTTGCAGA----A-AAA--AA-T-AA--T-TG-T--T--CT---T-----------------ATTTTAT-CC-CGTATTTAGA-----CTTGTT-GTACATGAAT---C---AACatcagtattttcagaatcagttataaataaaaaatggtcaaagcttcaacaaaatgcgtatatttgcagaaaaaaataattgttcttattttatcccgtatttagacttgttgtacatgaatcaacacttgtttaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATTCATCTTGTTTGCATTTTAATTTTGTCCAGAAGTGTTTGCCATCAATGAAAAATCATTCAGTTTATACAGAATTGTATATAAACATATTAAA
Unaligned ( gi|37 ): ACATGAATCAACCATATATTTTCTCTTTTTTTTACCTT
Alignments
lowQualScore : 1 111 1111 222222 222222222222 11111111111 11 222222222 22222222222 1111 22222222222 111111111 111111 2222222222 1111
lowQualScore : 555 2 3 1 0 8 0 000 1 0 1 8 1 11 7777 999999 55 1 999999999999 0 66 88888888888 4 22 66 555555555 0 4 4 4 11111111111 0000 33333333333 777 2 55 44 44 555 333333333 2 7777 7777 555 7777 1 1 1 11 2222 1 11 7777 666666 1 11 2 1 33 1 11 1 1 1 5555555555 1 222 222 11 444 11 1 33 4 4444 7 1 1
lowQualScore : ... . . . . . . ... . . . . . .. .... ...... .. . ............ . .. ........... . .. .. ......... . . . . ........... .... ........... ... . .. .. .. ... ......... . .... .... ... .... . . . .. .... . .. .... ...... . .. . . .. . .. . . . .......... . ... ... .. ... .. . .. . .... . . .
lowQualScore : 222 5 2 0 6 2 0 000 0 8 0 0 0 44 0000 000000 88 4 888888888888 7 99 55555555555 4 99 11 444444444 7 4 4 4 11111111111 0000 88888888888 000 7 00 66 22 888 333333333 5 1111 1111 888 7777 4 4 3 77 6666 2 77 0000 666666 2 66 4 2 22 0 66 2 2 2 6666666666 2 222 222 88 666 88 3 22 1 4444 1 4 5
consensus : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T-T--T-T-T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
Reference ( family-1091 ) : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T-T--T-T-T--CNTA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
gi|1 : --AAAATTT---A---------AACCTG---C----AT----TTA---TAGACT----TGTCAGAACCATTTATTTATAAAGA-TATGTCCC-AAAAC-TTTAACAATATGC--ATATTCA-AG--A----ATAA--A--ATCACA------T-T--A-T-T--CCAG--TTT-T-GCTGCCATTCTTTACC-AATATTTGCA--TT-CTT-TT-A-ATATGAAT---CAATAACTA--AA-C-T--T-TTA--
gi|1 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaTTCCAGTTTTG-CTGCCATTCTTTACCAATATTTGCATTCTTTTAATATGAATCAA-T-AACTAAACTTTTAATAAACTGC-TCTCAAATATAT----ATTAA-AATAGAAAAC--TTTATTAGAGCTTAAG-----------------------TTTTACA---T---CCATCTT---A-TTGGTA--TT--TTCATCA---A-T-TTGTTTATTGCATTGCTTTGTTATAGTAATAAAAATGTCTTATATGTAAACTAT-----------AAATA--TATTCC-----------AGTTTGT---ATTAAGCAGAT--GTA--GC---AAATAT---A---------ATCCGGAAAG----GC----ATT---CAataaactgctctcaaatatatattaaaatagaaaactttattagagcttaagttttacatccatcttattggtattttcatcaatttgtttattgcattgctttgttatagtaataaaaatgtcttatatgtaaactataaatatattccagtttgtattaagcagatgtagcaaatataatccggaaaggcattcatcaa
gi|10 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaaaaatttaaacctgcatttatagacttgtcagaaccatttatttataaagatatgtcccaaaactttaacaatatgcatattcaagaataaaatcacattaAAGAAGAACAATA--G----AAATAT---A--------------GAAAC----AT----GCT---CAGTAT----TTGCAGAACCATTTATGAATACAAA-TAGA-GCT-AAACCATTCAACTAATTGCGTATATTTGCAT--A----A-AA--A--CGGTAA------T-T--T-T-T--CTTA---TT-TGGCGGCCATTTTGT-CT-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AATCC--TC-A-T--T-TTA--C-T-T-TC-T-GTAACA-TAAtcaa
gi|11 : TTTATAAATAAGAA-TAAA-GCC-AAAGCATTCGGCGAAATGAGTATATTTGTAG--A----A-AA--A--AGGTCA------T-T--TCT-T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-T---TT-GTACATGTAT---C---AACCA--T--T-G--T-TTAT-C-T-C-AT-TATTATCC-TAAAAC
gi|12 : TATAAATAAAAT-TAAA-CCC-AAAACATTCCACAAAATGAGTATATTTGCAG--A----A-AT--A--GTGTCAT-----T-T--T-T-T--CATA--TTT-TTGCGACCATTTTGA-CC-CTAATTTAGAC-TT-TT--TT-GTAAACAAAT---C---AACTA--TA-T-T--T-TTA--T-T-C-TTAT-CTATCC-TAAAACat
gi|13 : TTTATAAATAAAAA-TAAG-GCA-AAAGCATTAAACAAAATGAGTATATTTGCCA--A----A-AA--AT-GTATT-------T-T--T-T-T--TATA--TTT-TGGCAGCCATTTTGT-GC-CTCATTGAGAT-TG-ATTGTTCTTATAT-----------AACCA--TA-A-T--T-TTA--T-TCT-AT-T-TTACCC-gt
gi|14 : TATAAATAAATA-TACG-GCC-AAAGCATTT-ACCAAATGCGTATATTTCCA---A----G-AA--A--GTGTCATG----T-T--T-T-T--CATA--TTT-TGGCTGTCATTTTGT-CC-CTAATTTAGAC-T---TTA-T-GTACATGAAG---C---AACCA--TA-T-A--T-TTA--C-TCT-CT-G-TTACCC-TAAAACtcaaca
gi|15 : TTATGAATATATA-TACG-GCA-AAATCATTCACCAAA-TGCGTTTATTTACGG--C----A-AA--A--GTATCA------T-T--T-T-T--CATA--TTT-TGGCTGTTATTTTGC-CC-CTTGTTTAGAC-TT-C---AT-GTACATAAAT---C---AACCA--TA---T--T-TCA--C-TGC-TT-T-TTACCC-TAAAACa
gi|16 : TTATAAATAAAAAATAAA-GCC-AAAGCTTTCAACAAAATGTGTATATTT-CAG--T----A-AA--A--GTGTAA------TGT--T-T-T--CATA--TTT-TGGAGGCCATTTTGT-CC-CTTATTTAGAC-TT-TTTG-T-ATTTAT--AT---C---AA-CA--TATT-T--T-TTA--C-TCT-TT-T-TTACCC-TAAAAat
gi|17 : ATAAATGAAAA-TAAG-CCC-AAATCATTTAACAAGATACATATATTTGCAG--A----A-AA--A--TTGTCAT-----T-T--T-T-T--CTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TT-A-T--T-TTA--C-T-CGTT-T-TTAACC-TAAAA
gi|18 : TTTATAAACAAAAC-TAGG-GCA-AAAACATTCAACAAAATGCG-ATATTTGCTG--T----A-AA--A--GTGTAT------T-T--T-T-T--CATA---TT-TAACGGCCATTTTAA-TC-CTTATTTAGA-----CTTGTT-GTACTTAAAT---C---CACCA--TA-G-C--T-TTG--C-T-CATT-T-TTACCC-TAACACt
gi|19 : TATAAATAAATA-TAAG-GCC-AAAACATTCAACAAAATGCGTATATTTGCAG--A----A-AA--C--G-GTTA------T-T--T-TGT--CATA--TGC-AGGCGGCCATTTTGT-CC-CTTATTTAGACGTT-----TT-GTACATTAAT---C---AA-TA--TC-T-G--T-TTA--C-T-C-GTAT-TTACCA-TAAAAC
gi|2 : A--GC--AAAATATTGAA---------ATT-TGAAACTTACATAAAAGTTATACAGACG----TTTCAGAACCAATTAATCATAAAAA---AG-GTCTCAAGAATTTAACAATAGATATATGTGTGCAC--ATTCCA-GC--A------CA------T-T--C-T-T--CTAG--CTT-TGGCGGCC-TTTTA--CC-CATACTTGCA--TT-CTT-TT-A-ACATGAACCAAC---AACCAACTA-T-T--TAATA--CAT-T-AC-T-TTAa
gi|2 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaTTCTAGCTTTGGCGGCCTTT---TACCCATACTTGCATTCTTTTAACATGAACCAA-C-AACCAACTATTTAATACATTAC-TTTAACATATAT----ATT-ACAATGGAAAATAGTTTACTAAAGCTGAAG-T-TTAACATA----GTTGTACTTTTTTCAGATT---ATATCGTAAAA-AATGAA-TTT--T-CAT-A---AAC-TTGTTT--TGCATTGCTTTGTTAGAGTGA-AAGAT-GCATAACGTATAGAAGAT-----------ACA-A--TATTTT-----------AGTTTCT---ATTAAGTAGAA--GTA--GT--AAAGTAT---A---------ACCCTGAAAC----AT----GTT---CAATTT----TTTCAGAACCATTTATAAATAAAacatatatattacaatggaaaatagtttactaaagctgaagtttaacatagttgtacttttttcagattatatcgtaaaaaatgaattttcataaacttgttttgcattgctttgttagagtgaaagatgcataacgtatagaagatacaatattttagtttctattaagtagaagtagtaaagtataaccctgaaacatgttcaattttttcagaaccatttataaataaa
gi|20 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaagcaaaatattgaaatttgaaacttacataaaagttatacagacgtttcagaaccaattaatcataaaaaaggtctcaagaatttaacaatagatatatgtgtgcacattccagcacattcACAAATACAAA-TAAG-CCC-AAGTCTTTTAACAAAATACATATATTTGCAG--A----A-AA--A--TGGCCA------T-T--T-T-TTTCTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACACGAAT---C---AAC----TA-T-TACT-TTA--C-T-CATT-T-TTAACC-TAAAA
gi|21 : TTT-TAGATAAAAT-TAAG-GCC-AAAGCATTCAACAAAATGTGTTTTTTTGCAG--A----A-AA--A--GTGT-ATT----T-T--T-T-T--CATA--ATT-TGACAGTCATTTTGT-CC-CTTATTTAGAC-TT-TTTA-----ACTTGAAT---C---TACCA--TAGT-T--T-TTA--T-T-T-TTAT-TTACCC-TAA
gi|22 : TATAAATAAAAA-TAAG-ACC-AAAGCATTCAACAAAATGTGTATATTTGCAG--A----A-AA--A----GCCAT-----T-T--T-T-T--CATATTTTT-TTATGGCCATTTTGT-CC-CTTATTTCAAC-TT-T---TT-GTACTTAAAT---C---AACCA--CA-T-T--T-TTA--CTT-T-AT-T-TTACC
gi|23 : AATAAAAA-TAAG-GCC-AAAGTATTCAACGAAATAAATATATTTGCGG--G----A-AA--A--GTGTCA------T-T--T-T-T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC--T-CTT-TT--TACTTGAAT---C---AACCG--TA-T-T--T-TTA--T-TCT-TT-T-TTACCC-TAAAACggaa
gi|24 : TATAAATAAAAA-TAAG-GTC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AT--A--GTGTCA------T-T--T-T-T--CATA--TTT-TGGCAGTCATTTTGT-CC-CTTATTTA-AC-TT---------TATATACTT---C---AACTA--TA-C-T--T-TTA--C-TCT-TT-C-TTACCC-TAAAa
gi|25 : AAA-CAAG-ATC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--CAGTCA------T-T--T-T-T--CTTA--TTT-TGGCGTCCATTTTTT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCT--TA-T-T--T-TTA--C-T-T-CT-T-TTATCA-TAAAACca
gi|26 : cTTTTTCAATAAAAG-TAAG-ACC-AAAGCATTCAACAAAATGAG--TATTTGCAGAAA----A-AA--A--GTGT-ATT----T-T--T-T-T--CATA--TTT-TGGCGGCCATAAGAT-CC-CTTATTTAAAC-TT-TTT-TT-G--CTTAAAT---C---AACCA--CA-T-T--T-TT
gi|27 : CC-GAAGCATTCAACAAGTTAAGTGTATTTACAG--T----A-AA--C--G-GACA------A-T--T-T-T--CATA--TTT-TGGCGACCATTTTGT-CC-TTTATTTAGAC--------TT-GTACTTGAAG---C---A-----------C--T-TTA--C-T-T-AC-T-TTTCCCGTAAAAtacc
gi|28 : tttaatataGCATTCAACACAATGCGTATATTTGCAG--A----A-AA--AAGGTGTTT------T-T--T-T-T--CTTA--TTT-TGGAGGTCATTTT-T-CC-CTTAGATGAA-----CTTGCT-GTACATGAAT---C---AACAA--TT-T-G--T-TCA--C-T-TGTT-T-TTACAC-TAAAg
gi|29 : AAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCTTATACTTGCAG--A----A-AA--A--GTGT-ATT----T-T--T-T-T--TATA--TTT-TGGTCGCCATTTTGT-CCATTTA-TTATAC-TT-TTTGTT-CT----------------ACCA--TG-T-T--T-TTA--C-c
gi|3 : TTCTAGCTTTGGTGACCTTTCTTTACACATATTTGCATTTTGTTAACAT-AACCAA-TTAACCAAATAT-----AAACTACATAGAAAATATGT----AT--A-CATATAGAATA------TAGATCTTAAG-T-T-G-----TTCAGTTGTA--TGTT---------------TTAAAA-ATGGA--TTT--TTCAT-ATAAA-C-GTGTTTATTGCATTGCTTTGTTAGAGTGA-AAGAC-ACACAACATAAAGAAAAT-----------ACAAC--TATTTC-----------AGTGTGT---ATTAAGTAGAA--GTA--AC--AAGA-AT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TCTCAGAACGATTTATAAATAAAAA-TAAG-ACT-AAAGCATTC-ACCAAATGCGTATATTAGCAG--A----A-AA--A--GTGTCATTT---T-T--T-T-T--CATA--TGT-TGACCACCATTTTGT-CC-CTTTTTTAGAC-T---TTA-T-GTACATGAAT---C---AA-CA--TA-T-A--T-TTA--T-TCT-AT-A-TTACTT-TAAAcctaca
gi|30 : aatttgaaacatacataatagtcttaagaacttaacaaaatatgcatgcatattaatgaataaaagcacacccTGCAG--A----A-AA--C--GTGTCA------T-T--T-T-TTTCATA--TTT-CGTCGGCCATTTTGT-CC-CTTCTTTAAAC-TT-TTT-T---TACTTGAAC---C---ATCCA--TA-T-T--T-TTA--T-TAT-TT-T-TTAGCC-TTAAACcca
gi|31 : taATATTTG-AG--A----A-AA--A--TTGACA------T-T--TAT-T--CTAA--TTT-AAGCGCCCAATTT-T-CC-CTTACTT-GAA-TT-CTT-TT--TACACGAAC---C---AAGCA--TC-T-T--T-TT---C-T-T-TTAT-CTGCCA-TAAAat
gi|33 : c--GTGTCG------T-T--T-T-T--CAGA--TTTGTATCAGCCATTT-GT-CG-CTTATTTGGAC-TT-T---TT-ATACATTAAT---C---AGCTA--TG---T--T-TTA--C-T-C-TT-T-TTATTC-TTAAcac
gi|34 : ------T-T--T-T-T--CATA--TTT-TGGCTCTCATTTTGT-CC-TTAATTCAGAC-T---TTA-T-GTACATGAAT---C---AACCA--TA-G-T--T-TTACCC-T-T-TT-T-TTATCC-TAAActat
gi|35 : catTGTAAATAAATA-TACG-GCC-AAAGTATTCAACAAA-TGCGTATATATGCAG--A----A-AA--A--GTGTCAT-----T-T--T-T-T--CATA--TTT-TGGCTGTCATTTTGT-Cc
gi|36 : TATAA-TAAAAA-TAGG-GCC-AAAACATTCAACAAAATGAGTATATTTACAG--A----A-AA--A--
gi|4 : TTCTAGCTTTGGATACCTTTCTT-ACACATATTTGCATTCTGTTAGAAT-AACCAAAT-AACCAAATATTTATTAAACTAC-TGTA---TATAT----AT-----ATAGAAAATAGTTTATAAGAGCTTAAC-CAT-AACATATTCAATTGTA--TTTTACAGATT---ATATCTTAAAA-ATTGAA-TTTCGTTTAT-A-----C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-CAGAG-GTATAGTGTGAAGAAGAT-----------ACACA--TATTCC-----------AGTTTGT---ATTAAGGAGAA--GTA--GC--AAAGTAT---A---------ATCCTGAAAC----AT----GTT---CAGTGT----TCTCAGAACTATTTATTAATAAAAA-TAAG-GCC-ATAGC-----ACAAAATGCGTATATTTGCAG--A----A-AA--A--CAGTCA------T-T--T-T-T--CTTA--TTT-AAGCGGCCATTTTAT-CC-CTTATTTAGAC-TTACTTGTT-GTACATGAAT---C---AACCA--TA-T-T--C-TTA--C-T-T-AT-T-TTACCA-TA
gi|5 : tTTTAA-ATGAACCAA-T-AACCAGTTATTTAATAAGTTAC-TCTAAAATGTATGCATATT-T-A-TAGAATATAGTTTACTAGAGCTTAAGAT-T-AACATATTAAGTTGCA--TTT-----ATTTCGAGATCTAAAAA-ATGGAA-TTT--TTCAT-AGAAA-C-CTGTTCATTACATTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACAGA--TATTCCTGGTCCAGACCAGTTTGT---ATTCAATAGAA--GTA--GC--AAACTAT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TTTTAGAACCGTTTACAAATAAAAA-TAAG-GCC-AAAGCATTCAAGAACATGCGTATAATTACAG--A----A---------TTTTT------T-T--T-T-T--CATT--TTT-TAGCGGCCATTTTGT-CC-CTTA-TTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TC-T-G--T-TTA--CAT-A-GT-T-TTACTC-TAAtcac
gi|6 : taTAAAATATGTAN-NNN--NNNNN-N-------TTGTTTATTGCATAGTTTTGTTAGAATGA-AAGAA-GCATACC-TGCAAAAGAT-----------ACAAA--TATTCA-----------AATTTGT---ATTAAACAGAA--GTA--GC--AAAGTAC---A---------ATCCTGAAAT----AT----GTT---CTGTAT----TTT-AGAATCATTTATCAATAAAAT-TAAG-GTT-GAAGCATTCAACAAAATGC--ATATTTAGAG--A----A-AAGCA--GT-TC-------T-T--T-T-T--CTTA--TTT-TCAAGTCCATTTTGT-CC-CTTATTTGGA-----TTTGTT-GTACATAGAA---C---A-----------T--T-TTA--C-T-T-GTAT-TTACCA-TAGAA
gi|7 : TATTCATTTTTT--TTTTCAAGATT---ATATCTTAAAA-ATGGTA--GT--TTCAT-A---A-TATTGTTTATTGAGATGTTTTGTTTGAGTGA-AAGAA-GCCTAAAATATAGAAGATGTCATCCTGAAACATATCTATTAC-------------TTTCT---ATAAATTA-AA--GTAAGGC--AAAaca
gi|7 : TTTGT----TTGAGTGAAA--GAA--GCCTAAAATAT---AGAAGATGTCATCCTGAAAC----AT----ATC---TATTAC----TTTC---------TATAAATTAAAG-TAAG-GCA-AAGGTCTTCAACAAATTGCATATCTTTGCAT--A----A-AA--------TCACTCATTT-T--T-T-T--CTTA--TTT-TTGTGGTCATTTTGT-CA-CTTGTTTGAA---T-GTT-TT-GTGCATGTAT---C---ACCCC--CA-TCT--T-TTA--T-T-T-GT-T-TTACCC-TGAAAggtcttcaacaaattgcatatctttgcataaaatcactcatttttttcttatttttgtggtcattttgtcacttgtttgaatgttttgtgcatgtatcacccccatcttttatttgttttaccctgaaaa
gi|8 : tattcattttttttttcaagattatatcttaaaaatggtagtttcataatattgtttattgagatgtTCAGTTGTA--TTTTTAAGATT---TTATCTTTAAA-ATGGAA--TT--TTCATAA---A-T-TTGTTTTTTGTGTTGCTTTGCTCGAGTGA-AATAA-GCTTAATATGTAGAAAAT-----------ACATT--TATTCC-----------GGTTT----------GTAGAA--GTA--GC--AAAATAT---A---------GTTATGAAAC----AT----GT------GTATTACATTCCTGAAACCTTTATCAATGAAA---AAT-GCC-AAAGGAGTCAACAACATGAATACATTTGCAA--T----C-AA--A------CA------C-CCAT-A-T--CTTA--TTT-TAGCGGTCATTTTGT-TC-TTTATTCCGAT-TT-TTTGTa
gi|9 : TTATG--TTTTACGAGTT----TATCTTAAAA-ACGGAACTTT--TTTA--A---A-C-TTATTTATAACATTGCTTTGTTCGATTAA-AAGAA-ACATAACATGTAGACGAT-----------ACActttt
gi|9 : TTTGTTCGATTAAA-AGAA--ACA---T--AACATGT---A---------GAC--GATAC----AA------T---CAGTAT----TTTCAGAATCAGTTATAAATAAAAA--ATG-GTC-AAAGC-TTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--A-ATAA------T-T--G-T-T--CTT---------------ATTTTAT-CC-CGTATTTAGA-----CTTGTT-GTACATGAAT---C---AACatcagtattttcagaatcagttataaataaaaaatggtcaaagcttcaacaaaatgcgtatatttgcagaaaaaaataattgttcttattttatcccgtatttagacttgttgtacatgaatcaacacttgtttaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATTCATCTTGTTTGCATTTTAATTTTGTCCAGAAGTGTTTGCCATCAATGAAAAATCATTCAGTTTATACAGAATTGTATATAAACATATTAAA
Unaligned ( gi|37 ): ACATGAATCAACCATATATTTTCTCTTTTTTTTACCTT
Alignments
lowQualScore : 1 111 1111 222222 222222222222 11111111111 11 222222222 22222222222 1111 22222222222 111111111 111111 2222222222 1111
lowQualScore : 555 2 3 1 0 8 0 000 1 0 1 8 1 11 7777 999999 55 1 999999999999 0 66 88888888888 4 22 66 555555555 0 4 4 4 11111111111 0000 33333333333 777 2 55 44 44 555 333333333 2 7777 7777 555 7777 1 1 1 11 2222 1 11 6666 555555 22 2 22 11 2 22 1 1 1 5555555555 1 222 222 11 444 11 1 33 4 4444 7 1 1
lowQualScore : ... . . . . . . ... . . . . . .. .... ...... .. . ............ . .. ........... . .. .. ......... . . . . ........... .... ........... ... . .. .. .. ... ......... . .... .... ... .... . . . .. .... . .. .... ...... .. . .. .. . .. . . . .......... . ... ... .. ... .. . .. . .... . . .
lowQualScore : 222 5 2 0 6 2 0 000 0 8 0 0 0 44 0000 000000 88 4 888888888888 7 99 55555555555 4 99 11 444444444 7 4 4 4 11111111111 0000 88888888888 000 7 00 66 22 888 333333333 5 1111 1111 888 7777 4 4 3 77 6666 2 77 3333 000000 88 4 88 66 9 88 2 2 2 6666666666 2 222 222 88 666 88 3 22 1 4444 1 4 5
consensus : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
Reference ( family-1091 ) : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
gi|1 : --AAAATTT---A---------AACCTG---C----AT----TTA---TAGACT----TGTCAGAACCATTTATTTATAAAGA-TATGTCCC-AAAAC-TTTAACAATATGC--ATATTCA-AG--A----ATAA--A--ATCACA------T--TA-T--T--C-CA--GTT-TTGCTGCCATTCTTTACC-AATATTTGCA--TT-CTT-TT-A-ATATGAAT---CAATAACTA--AA-C-T--T-TTA--
gi|1 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaTTCCAGTTTTG-CTGCCATTCTTTACCAATATTTGCATTCTTTTAATATGAATCAA-T-AACTAAACTTTTAATAAACTGC-TCTCAAATATAT----ATTAA-AATAGAAAAC--TTTATTAGAGCTTAAG-----------------------TTTTACA---T---CCATCTT---A-TTGGTA--TT--TTCATCA---A-T-TTGTTTATTGCATTGCTTTGTTATAGTAATAAAAATGTCTTATATGTAAACTAT-----------AAATA--TATTCC-----------AGTTTGT---ATTAAGCAGAT--GTA--GC---AAATAT---A---------ATCCGGAAAG----GC----ATT---CAataaactgctctcaaatatatattaaaatagaaaactttattagagcttaagttttacatccatcttattggtattttcatcaatttgtttattgcattgctttgttatagtaataaaaatgtcttatatgtaaactataaatatattccagtttgtattaagcagatgtagcaaatataatccggaaaggcattcatcaa
gi|10 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaaaaatttaaacctgcatttatagacttgtcagaaccatttatttataaagatatgtcccaaaactttaacaatatgcatattcaagaataaaatcacattaAAGAAGAACAATA--G----AAATAT---A--------------GAAAC----AT----GCT---CAGTAT----TTGCAGAACCATTTATGAATACAAA-TAGA-GCT-AAACCATTCAACTAATTGCGTATATTTGCAT--A----A-AA--A--CGGTAA------T--TT-T--T--CTTA---TT-TGGCGGCCATTTTGT-CT-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AATCC--TC-A-T--T-TTA--C-T-T-TC-T-GTAACA-TAAtcaa
gi|11 : TTTATAAATAAGAA-TAAA-GCC-AAAGCATTCGGCGAAATGAGTATATTTGTAG--A----A-AA--A--AGGTCA------T--TTCT--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-T---TT-GTACATGTAT---C---AACCA--T--T-G--T-TTAT-C-T-C-AT-TATTATCC-TAAAAC
gi|12 : TATAAATAAAAT-TAAA-CCC-AAAACATTCCACAAAATGAGTATATTTGCAG--A----A-AT--A--GTGTCAT-----T--TT-T--T--CATA--TTT-TTGCGACCATTTTGA-CC-CTAATTTAGAC-TT-TT--TT-GTAAACAAAT---C---AACTA--TA-T-T--T-TTA--T-T-C-TTAT-CTATCC-TAAAACat
gi|13 : TTTATAAATAAAAA-TAAG-GCA-AAAGCATTAAACAAAATGAGTATATTTGCCA--A----A-AA--AT-GTATT-------T--TT-T--T--TATA--TTT-TGGCAGCCATTTTGT-GC-CTCATTGAGAT-TG-ATTGTTCTTATAT-----------AACCA--TA-A-T--T-TTA--T-TCT-AT-T-TTACCC-gt
gi|14 : TATAAATAAATA-TACG-GCC-AAAGCATTTACCAAA-TGCGTATATTTCCA---A----G-AA--A--GTGTCA------TGTTT-T--T--CATA--TTT-TGGCTGTCATTTTGT-CC-CTAATTTAGAC-T---TTA-T-GTACATGAAG---C---AACCA--TA-T-A--T-TTA--C-TCT-CT-G-TTACCC-TAAAACtcaaca
gi|15 : TTATGAATATATA-TACG-GCA-AAATCATTCACCAAA-TGCGTTTATTTACGG--C----A-AA--A--GTATCA------T--TT-T--T--CATA--TTT-TGGCTGTTATTTTGC-CC-CTTGTTTAGAC-TT-C---AT-GTACATAAAT---C---AACCA--TA---T--T-TCA--C-TGC-TT-T-TTACCC-TAAAACa
gi|16 : TTATAAATAAAAAATAAA-GCC-AAAGCTTTCAACAAAATGTGTATATTT-CAG--T----A-AA--A--GTGTAA------TG-TT-T--T--CATA--TTT-TGGAGGCCATTTTGT-CC-CTTATTTAGAC-TT-TTTG-T-ATTTAT--AT---C---AA-CA--TATT-T--T-TTA--C-TCT-TT-T-TTACCC-TAAAAat
gi|17 : ATAAATGAAAA-TAAG-CCC-AAATCATTTAACAAGATACATATATTTGCAG--A----A-AA--A--TTGTCAT-----T--TT-T--T--CTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TT-A-T--T-TTA--C-T-CGTT-T-TTAACC-TAAAA
gi|18 : TTTATAAACAAAAC-TAGG-GCA-AAAACATTCAACAAAATGCG-ATATTTGCTG--T----A-AA--A--GTGTAT------T--TT-T--T--CATA---TT-TAACGGCCATTTTAA-TC-CTTATTTAGA-----CTTGTT-GTACTTAAAT---C---CACCA--TA-G-C--T-TTG--C-T-CATT-T-TTACCC-TAACACt
gi|19 : TATAAATAAATA-TAAG-GCC-AAAACATTCAACAAAATGCGTATATTTGCAG--A----A-AA--C--G-GTTA------T--TT-TG-T--CATA--TGC-AGGCGGCCATTTTGT-CC-CTTATTTAGACGTT-----TT-GTACATTAAT---C---AA-TA--TC-T-G--T-TTA--C-T-C-GTAT-TTACCA-TAAAAC
gi|2 : A--GC--AAAATATTGAA---------ATT-TGAAACTTACATAAAAGTTATACAGACG----TTTCAGAACCAATTAATCATAAAAA---AG-GTCTCAAGAATTTAACAATAGATATATGTGTGCAC--ATTCCA-GC--A------CA------T--TC-T--T--C-TAG-CTT-TGGCGGCC-TTTTA--CC-CATACTTGCA--TT-CTT-TT-A-ACATGAACCAAC---AACCAACTA-T-T--TAATA--CAT-T-AC-T-TTAa
gi|2 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaTTCTAGCTTTGGCGGCCTTT---TACCCATACTTGCATTCTTTTAACATGAACCAA-C-AACCAACTATTTAATACATTAC-TTTAACATATAT----ATT-ACAATGGAAAATAGTTTACTAAAGCTGAAG-T-TTAACATA----GTTGTACTTTTTTCAGATT---ATATCGTAAAA-AATGAA-TTT--T-CAT-A---AAC-TTGTTT--TGCATTGCTTTGTTAGAGTGA-AAGAT-GCATAACGTATAGAAGAT-----------ACA-A--TATTTT-----------AGTTTCT---ATTAAGTAGAA--GTA--GT--AAAGTAT---A---------ACCCTGAAAC----AT----GTT---CAATTT----TTTCAGAACCATTTATAAATAAAacatatatattacaatggaaaatagtttactaaagctgaagtttaacatagttgtacttttttcagattatatcgtaaaaaatgaattttcataaacttgttttgcattgctttgttagagtgaaagatgcataacgtatagaagatacaatattttagtttctattaagtagaagtagtaaagtataaccctgaaacatgttcaattttttcagaaccatttataaataaa
gi|20 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaagcaaaatattgaaatttgaaacttacataaaagttatacagacgtttcagaaccaattaatcataaaaaaggtctcaagaatttaacaatagatatatgtgtgcacattccagcacattcACAAATACAAA-TAAG-CCC-AAGTCTTTTAACAAAATACATATATTTGCAG--A----A-AA--A--TGGCCA------T--TT-T--TTTCTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACACGAAT---C---AAC----TA-T-TACT-TTA--C-T-CATT-T-TTAACC-TAAAA
gi|21 : TTT-TAGATAAAAT-TAAG-GCC-AAAGCATTCAACAAAATGTGTTTTTTTGCAG--A----A-AA--A--GTGT-ATT----T--TT-T--T--CATA--ATT-TGACAGTCATTTTGT-CC-CTTATTTAGAC-TT-TTTA-----ACTTGAAT---C---TACCA--TAGT-T--T-TTA--T-T-T-TTAT-TTACCC-TAA
gi|22 : TATAAATAAAAA-TAAG-ACC-AAAGCATTCAACAAAATGTGTATATTTGCAG--A----A-AA--A----GCCAT-----T--TT-T--T--CATATTTTT-TTATGGCCATTTTGT-CC-CTTATTTCAAC-TT-T---TT-GTACTTAAAT---C---AACCA--CA-T-T--T-TTA--CTT-T-AT-T-TTACC
gi|23 : AATAAAAA-TAAG-GCC-AAAGTATTCAACGAAATAAATATATTTGCGG--G----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC--T-CTT-TT--TACTTGAAT---C---AACCG--TA-T-T--T-TTA--T-TCT-TT-T-TTACCC-TAAAACggaa
gi|24 : TATAAATAAAAA-TAAG-GTC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AT--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCAGTCATTTTGT-CC-CTTATTTA-AC-TT---------TATATACTT---C---AACTA--TA-C-T--T-TTA--C-TCT-TT-C-TTACCC-TAAAa
gi|25 : AAA-CAAG-ATC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--CAGTCA------T--TT-T--T--CTTA--TTT-TGGCGTCCATTTTTT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCT--TA-T-T--T-TTA--C-T-T-CT-T-TTATCA-TAAAACca
gi|26 : cTTTTTCAATAAAAG-TAAG-ACC-AAAGCATTCAACAAAATGAG--TATTTGCAGAAA----A-AA--A--GTGT-ATT----T--TT-T--T--CATA--TTT-TGGCGGCCATAAGAT-CC-CTTATTTAAAC-TT-TTT-TT-G--CTTAAAT---C---AACCA--CA-T-T--T-TT
gi|27 : CC-GAAGCATTCAACAAGTTAAGTGTATTTACAG--T----A-AA--C--G-GACA------A--TT-T--T--CATA--TTT-TGGCGACCATTTTGT-CC-TTTATTTAGAC--------TT-GTACTTGAAG---C---A-----------C--T-TTA--C-T-T-AC-T-TTTCCCGTAAAAtacc
gi|28 : tttaatataGCATTCAACACAATGCGTATATTTGCAG--A----A-AA--AAGGTGTTT------T--TT-T--T--CTTA--TTT-TGGAGGTCATTTT-T-CC-CTTAGATGAA-----CTTGCT-GTACATGAAT---C---AACAA--TT-T-G--T-TCA--C-T-TGTT-T-TTACAC-TAAAg
gi|29 : AAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCTTATACTTGCAG--A----A-AA--A--GTGT-ATT----T--TT-T--T--TATA--TTT-TGGTCGCCATTTTGT-CCATTTA-TTATAC-TT-TTTGTT-CT----------------ACCA--TG-T-T--T-TTA--C-c
gi|3 : TTCTAGCTTTGGTGACCTTTCTTTACACATATTTGCATTTTGTTAACAT-AACCAA-TTAACCAAATAT-----AAACTACATAGAAAATATGT----AT--A-CATATAGAATA------TAGATCTTAAG-T-T-G-----TTCAGTTGTA--TGTT---------------TTAAAA-ATGGA--TTT--TTCAT-ATAAA-C-GTGTTTATTGCATTGCTTTGTTAGAGTGA-AAGAC-ACACAACATAAAGAAAAT-----------ACAAC--TATTTC-----------AGTGTGT---ATTAAGTAGAA--GTA--AC--AAGA-AT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TCTCAGAACGATTTATAAATAAAAA-TAAG-ACT-AAAGCATTC-ACCAAATGCGTATATTAGCAG--A----A-AA--A--GTGTCATTT---T--TT-T--T--CATA--TGT-TGACCACCATTTTGT-CC-CTTTTTTAGAC-T---TTA-T-GTACATGAAT---C---AA-CA--TA-T-A--T-TTA--T-TCT-AT-A-TTACTT-TAAAcctaca
gi|30 : aatttgaaacatacataatagtcttaagaacttaacaaaatatgcatgcatattaatgaataaaagcacacccTGCAG--A----A-AA--C--GTGTCA------T--TT-TTTT--CATA--TTT-CGTCGGCCATTTTGT-CC-CTTCTTTAAAC-TT-TTT-T---TACTTGAAC---C---ATCCA--TA-T-T--T-TTA--T-TAT-TT-T-TTAGCC-TTAAACcca
gi|31 : taATATTTG-AG--A----A-AA--A--TTGACA------T--TTAT--T--CTAA--TTT-AAGCGCCCAATTT-T-CC-CTTACTT-GAA-TT-CTT-TT--TACACGAAC---C---AAGCA--TC-T-T--T-TT---C-T-T-TTAT-CTGCCA-TAAAat
gi|33 : c--GTGTCG------T--TT-T--T--CAGA--TTTGTATCAGCCA-TTTGT-CG-CTTATTTGGAC-TT-T---TT-ATACATTAAT---C---AGCTA--TG---T--T-TTA--C-T-C-TT-T-TTATTC-TTAAcac
gi|34 : ------T--TT-T--T--CATA--TTT-TGGCTCTCATTTTGT-CC-TTAATTCAGAC-T---TTA-T-GTACATGAAT---C---AACCA--TA-G-T--T-TTACCC-T-T-TT-T-TTATCC-TAAActat
gi|35 : catTGTAAATAAATA-TACG-GCC-AAAGTATTCAACAAA-TGCGTATATATGCAG--A----A-AA--A--GTGTCAT-----T--TT-T--T--CATA--TTT-TGGCTGTCATTTTGT-Cc
gi|36 : TATAA-TAAAAA-TAGG-GCC-AAAACATTCAACAAAATGAGTATATTTACAG--A----A-AA--A--
gi|4 : TTCTAGCTTTGGATACCTTTCTT-ACACATATTTGCATTCTGTTAGAAT-AACCAAAT-AACCAAATATTTATTAAACTAC-TGTA---TATAT----AT-----ATAGAAAATAGTTTATAAGAGCTTAAC-CAT-AACATATTCAATTGTA--TTTTACAGATT---ATATCTTAAAA-ATTGAA-TTTCGTTTAT-A-----C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-CAGAG-GTATAGTGTGAAGAAGAT-----------ACACA--TATTCC-----------AGTTTGT---ATTAAGGAGAA--GTA--GC--AAAGTAT---A---------ATCCTGAAAC----AT----GTT---CAGTGT----TCTCAGAACTATTTATTAATAAAAA-TAAG-GCC-ATAGC-----ACAAAATGCGTATATTTGCAG--A----A-AA--A--CAGTCA------T--TT-T--T--CTTA--TTT-AAGCGGCCATTTTAT-CC-CTTATTTAGAC-TTACTTGTT-GTACATGAAT---C---AACCA--TA-T-T--C-TTA--C-T-T-AT-T-TTACCA-TA
gi|5 : tTTTAA-ATGAACCAA-T-AACCAGTTATTTAATAAGTTAC-TCTAAAATGTATGCATATT-T-A-TAGAATATAGTTTACTAGAGCTTAAGAT-T-AACATATTAAGTTGCA--TTT-----ATTTCGAGATCTAAAAA-ATGGAA-TTT--TTCAT-AGAAA-C-CTGTTCATTACATTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACAGA--TATTCCTGGTCCAGACCAGTTTGT---ATTCAATAGAA--GTA--GC--AAACTAT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TTTTAGAACCGTTTACAAATAAAAA-TAAG-GCC-AAAGCATTCAAGAACATGCGTATAATTACAG--A----A---------TTTTT------T--TT-T--T--CATT--TTT-TAGCGGCCATTTTGT-CC-CTTA-TTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TC-T-G--T-TTA--CAT-A-GT-T-TTACTC-TAAtcac
gi|6 : taTAAAATATGTAN-NNN--NNNNN-N-------TTGTTTATTGCATAGTTTTGTTAGAATGA-AAGAA-GCATACC-TGCAAAAGAT-----------ACAAA--TATTCA-----------AATTTGT---ATTAAACAGAA--GTA--GC--AAAGTAC---A---------ATCCTGAAAT----AT----GTT---CTGTAT----TTT-AGAATCATTTATCAATAAAAT-TAAG-GTT-GAAGCATTCAACAAAATGC--ATATTTAGAG--A----A-AAGCA--GT-TC-------T--TT-T--T--CTTA--TTT-TCAAGTCCATTTTGT-CC-CTTATTTGGA-----TTTGTT-GTACATAGAA---C---A-----------T--T-TTA--C-T-T-GTAT-TTACCA-TAGAA
gi|7 : TATTCATTTTTT--TTTTCAAGATT---ATATCTTAAAA-ATGGTA--GT--TTCAT-A---A-TATTGTTTATTGAGATGTTTTGTTTGAGTGA-AAGAA-GCCTAAAATATAGAAGATGTCATCCTGAAACATATCTATTAC-------------TTTCT---ATAAATTA-AA--GTAAGGC--AAAaca
gi|7 : TTTGT----TTGAGTGAAA--GAA--GCCTAAAATAT---AGAAGATGTCATCCTGAAAC----AT----ATC---TATTAC----TTTC---------TATAAATTAAAG-TAAG-GCA-AAGGTCTTCAACAAATTGCATATCTTTGCAT--A----A-AA--------TCACTCATTT--TT-T--T--CTTA--TTT-TTGTGGTCATTTTGT-CA-CTTGTTTGAA---T-GTT-TT-GTGCATGTAT---C---ACCCC--CA-TCT--T-TTA--T-T-T-GT-T-TTACCC-TGAAAggtcttcaacaaattgcatatctttgcataaaatcactcatttttttcttatttttgtggtcattttgtcacttgtttgaatgttttgtgcatgtatcacccccatcttttatttgttttaccctgaaaa
gi|8 : tattcattttttttttcaagattatatcttaaaaatggtagtttcataatattgtttattgagatgtTCAGTTGTA--TTTTTAAGATT---TTATCTTTAAA-ATGGAA--TT--TTCATAA---A-T-TTGTTTTTTGTGTTGCTTTGCTCGAGTGA-AATAA-GCTTAATATGTAGAAAAT-----------ACATT--TATTCC-----------GGTTT----------GTAGAA--GTA--GC--AAAATAT---A---------GTTATGAAAC----AT----GT------GTATTACATTCCTGAAACCTTTATCAATGAAA---AAT-GCC-AAAGGAGTCAACAACATGAATACATTTGCAA--T----C-AA--A--CACCCA------T--AT-C--T----TA--TTT-TAGCGGTCATTTTGT-TC-TTTATTCCGAT-TT-TTTGTa
gi|9 : TTATG--TTTTACGAGTT----TATCTTAAAA-ACGGAACTTT--TTTA--A---A-C-TTATTTATAACATTGCTTTGTTCGATTAA-AAGAA-ACATAACATGTAGACGAT-----------ACActttt
gi|9 : TTTGTTCGATTAAA-AGAA--ACA---T--AACATGT---A---------GAC--GATAC----AA------T---CAGTAT----TTTCAGAATCAGTTATAAATAAAAA--ATG-GTC-AAAGC-TTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--A-ATAA------T--TG-T--T--C-----TT----------ATTTTAT-CC-CGTATTTAGA-----CTTGTT-GTACATGAAT---C---AACatcagtattttcagaatcagttataaataaaaaatggtcaaagcttcaacaaaatgcgtatatttgcagaaaaaaataattgttcttattttatcccgtatttagacttgttgtacatgaatcaacacttgtttaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATTCATCTTGTTTGCATTTTAATTTTGTCCAGAAGTGTTTGCCATCAATGAAAAATCATTCAGTTTATACAGAATTGTATATAAACATATTAAA
Unaligned ( gi|37 ): ACATGAATCAACCATATATTTTCTCTTTTTTTTACCTT
Alignments
lowQualScore : 1 111 1111 222222 222222222222 11111111111 11 222222222 22222222222 1111 22222222222 111111111 111111 2222222222 1111
lowQualScore : 555 2 3 1 0 8 0 000 1 0 1 8 1 11 7777 999999 55 1 999999999999 0 66 88888888888 4 22 66 555555555 0 4 4 4 11111111111 0000 33333333333 777 2 55 44 44 555 333333333 2 7777 7777 555 7777 1 1 1 11 2222 1 11 6666 555555 22 2 22 11 2 22 1 1 1 5555555555 1 222 222 11 444 11 1 33 4 4444 7 1 1
lowQualScore : ... . . . . . . ... . . . . . .. .... ...... .. . ............ . .. ........... . .. .. ......... . . . . ........... .... ........... ... . .. .. .. ... ......... . .... .... ... .... . . . .. .... . .. .... ...... .. . .. .. . .. . . . .......... . ... ... .. ... .. . .. . .... . . .
lowQualScore : 222 5 2 0 6 2 0 000 0 8 0 0 0 44 0000 000000 88 4 888888888888 7 99 55555555555 4 99 11 444444444 7 4 4 4 11111111111 0000 88888888888 000 7 00 66 22 888 333333333 5 1111 1111 888 7777 4 4 3 77 6666 2 77 3333 000000 88 4 88 66 9 88 2 2 2 6666666666 2 222 222 88 666 88 3 22 1 4444 1 4 5
consensus : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
Reference ( family-1091 ) : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
gi|1 : --AAAATTT---A---------AACCTG---C----AT----TTA---TAGACT----TGTCAGAACCATTTATTTATAAAGA-TATGTCCC-AAAAC-TTTAACAATATGC--ATATTCA-AG--A----ATAA--A--ATCACA------T--TA-T--T--C-CA--GTT-TTGCTGCCATTCTTTACC-AATATTTGCA--TT-CTT-TT-A-ATATGAAT---CAATAACTA--AA-C-T--T-TTA--
gi|1 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaTTCCAGTTTTG-CTGCCATTCTTTACCAATATTTGCATTCTTTTAATATGAATCAA-T-AACTAAACTTTTAATAAACTGC-TCTCAAATATAT----ATTAA-AATAGAAAAC--TTTATTAGAGCTTAAG-----------------------TTTTACA---T---CCATCTT---A-TTGGTA--TT--TTCATCA---A-T-TTGTTTATTGCATTGCTTTGTTATAGTAATAAAAATGTCTTATATGTAAACTAT-----------AAATA--TATTCC-----------AGTTTGT---ATTAAGCAGAT--GTA--GC---AAATAT---A---------ATCCGGAAAG----GC----ATT---CAataaactgctctcaaatatatattaaaatagaaaactttattagagcttaagttttacatccatcttattggtattttcatcaatttgtttattgcattgctttgttatagtaataaaaatgtcttatatgtaaactataaatatattccagtttgtattaagcagatgtagcaaatataatccggaaaggcattcatcaa
gi|10 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaaaaatttaaacctgcatttatagacttgtcagaaccatttatttataaagatatgtcccaaaactttaacaatatgcatattcaagaataaaatcacattaAAGAAGAACAATA--G----AAATAT---A--------------GAAAC----AT----GCT---CAGTAT----TTGCAGAACCATTTATGAATACAAA-TAGA-GCT-AAACCATTCAACTAATTGCGTATATTTGCAT--A----A-AA--A--CGGTAA------T--TT-T--T--CTTA---TT-TGGCGGCCATTTTGT-CT-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AATCC--TC-A-T--T-TTA--C-T-T-TC-T-GTAACA-TAAtcaa
gi|11 : TTTATAAATAAGAA-TAAA-GCC-AAAGCATTCGGCGAAATGAGTATATTTGTAG--A----A-AA--A--AGGTCA------T--TTCT--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-T---TT-GTACATGTAT---C---AACCA--T--T-G--T-TTAT-C-T-C-AT-TATTATCC-TAAAAC
gi|12 : TATAAATAAAAT-TAAA-CCC-AAAACATTCCACAAAATGAGTATATTTGCAG--A----A-AT--A--GTGTCAT-----T--TT-T--T--CATA--TTT-TTGCGACCATTTTGA-CC-CTAATTTAGAC-TT-TT--TT-GTAAACAAAT---C---AACTA--TA-T-T--T-TTA--T-T-C-TTAT-CTATCC-TAAAACat
gi|13 : TTTATAAATAAAAA-TAAG-GCA-AAAGCATTAAACAAAATGAGTATATTTGCCA--A----A-AA--AT-GTATT-------T--TT-T--T--TATA--TTT-TGGCAGCCATTTTGT-GC-CTCATTGAGAT-TG-ATTGTTCTTATAT-----------AACCA--TA-A-T--T-TTA--T-TCT-AT-T-TTACCC-gt
gi|14 : TATAAATAAATA-TACG-GCC-AAAGCATTTACCAAA-TGCGTATATTTCCA---A----G-AA--A--GTGTCA------TGTTT-T--T--CATA--TTT-TGGCTGTCATTTTGT-CC-CTAATTTAGAC-T---TTA-T-GTACATGAAG---C---AACCA--TA-T-A--T-TTA--C-TCT-CT-G-TTACCC-TAAAACtcaaca
gi|15 : TTATGAATATATA-TACG-GCA-AAATCATTCACCAAA-TGCGTTTATTTACGG--C----A-AA--A--GTATCA------T--TT-T--T--CATA--TTT-TGGCTGTTATTTTGC-CC-CTTGTTTAGAC-TT-C---AT-GTACATAAAT---C---AACCA--TA---T--T-TCA--C-TGC-TT-T-TTACCC-TAAAACa
gi|16 : TTATAAATAAAAAATAAA-GCC-AAAGCTTTCAACAAAATGTGTATATTT-CAG--T----A-AA--A--GTGTAA------TG-TT-T--T--CATA--TTT-TGGAGGCCATTTTGT-CC-CTTATTTAGAC-TT-TTTG-T-ATTTAT--AT---C---AA-CA--TATT-T--T-TTA--C-TCT-TT-T-TTACCC-TAAAAat
gi|17 : ATAAATGAAAA-TAAG-CCC-AAATCATTTAACAAGATACATATATTTGCAG--A----A-AA--A--TTGTCAT-----T--TT-T--T--CTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TT-A-T--T-TTA--C-T-CGTT-T-TTAACC-TAAAA
gi|18 : TTTATAAACAAAAC-TAGG-GCA-AAAACATTCAACAAAATGCG-ATATTTGCTG--T----A-AA--A--GTGTAT------T--TT-T--T--CATA---TT-TAACGGCCATTTTAA-TC-CTTATTTAGA-----CTTGTT-GTACTTAAAT---C---CACCA--TA-G-C--T-TTG--C-T-CATT-T-TTACCC-TAACACt
gi|19 : TATAAATAAATA-TAAG-GCC-AAAACATTCAACAAAATGCGTATATTTGCAG--A----A-AA--C--G-GTTA------T--TT-TG-T--CATA--TGC-AGGCGGCCATTTTGT-CC-CTTATTTAGACGTT-----TT-GTACATTAAT---C---AA-TA--TC-T-G--T-TTA--C-T-C-GTAT-TTACCA-TAAAAC
gi|2 : A--GC--AAAATATTGAA---------ATT-TGAAACTTACATAAAAGTTATACAGACG----TTTCAGAACCAATTAATCATAAAAA---AG-GTCTCAAGAATTTAACAATAGATATATGTGTGCAC--ATTCCA-GC--A------CA------T--TC-T--T--C-TAG-CTT-TGGCGGCC-TTTTA--CC-CATACTTGCA--TT-CTT-TT-A-ACATGAACCAAC---AACCAACTA-T-T--TAATA--CAT-T-AC-T-TTAa
gi|2 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaTTCTAGCTTTGGCGGCCTTT---TACCCATACTTGCATTCTTTTAACATGAACCAA-C-AACCAACTATTTAATACATTAC-TTTAACATATAT----ATT-ACAATGGAAAATAGTTTACTAAAGCTGAAG-T-TTAACATA----GTTGTACTTTTTTCAGATT---ATATCGTAAAA-AATGAA-TTT--T-CAT-A---AAC-TTGTTT--TGCATTGCTTTGTTAGAGTGA-AAGAT-GCATAACGTATAGAAGAT-----------ACA-A--TATTTT-----------AGTTTCT---ATTAAGTAGAA--GTA--GT--AAAGTAT---A---------ACCCTGAAAC----AT----GTT---CAATTT----TTTCAGAACCATTTATAAATAAAacatatatattacaatggaaaatagtttactaaagctgaagtttaacatagttgtacttttttcagattatatcgtaaaaaatgaattttcataaacttgttttgcattgctttgttagagtgaaagatgcataacgtatagaagatacaatattttagtttctattaagtagaagtagtaaagtataaccctgaaacatgttcaattttttcagaaccatttataaataaa
gi|20 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaagcaaaatattgaaatttgaaacttacataaaagttatacagacgtttcagaaccaattaatcataaaaaaggtctcaagaatttaacaatagatatatgtgtgcacattccagcacattcACAAATACAAA-TAAG-CCC-AAGTCTTTTAACAAAATACATATATTTGCAG--A----A-AA--A--TGGCCA------T--TT-T--TTTCTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAGA-----CTTGTT-GTACACGAAT---C---AAC----TA-T-TACT-TTA--C-T-CATT-T-TTAACC-TAAAA
gi|21 : TTT-TAGATAAAAT-TAAG-GCC-AAAGCATTCAACAAAATGTGTTTTTTTGCAG--A----A-AA--A--GTGT-ATT----T--TT-T--T--CATA--ATT-TGACAGTCATTTTGT-CC-CTTATTTAGAC-TT-TTTA-----ACTTGAAT---C---TACCA--TAGT-T--T-TTA--T-T-T-TTAT-TTACCC-TAA
gi|22 : TATAAATAAAAA-TAAG-ACC-AAAGCATTCAACAAAATGTGTATATTTGCAG--A----A-AA--A----GCCAT-----T--TT-T--T--CATATTTTT-TTATGGCCATTTTGT-CC-CTTATTTCAAC-TT-T---TT-GTACTTAAAT---C---AACCA--CA-T-T--T-TTA--CTT-T-AT-T-TTACC
gi|23 : AATAAAAA-TAAG-GCC-AAAGTATTCAACGAAATAAATATATTTGCGG--G----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC--T-CTT-TT--TACTTGAAT---C---AACCG--TA-T-T--T-TTA--T-TCT-TT-T-TTACCC-TAAAACggaa
gi|24 : TATAAATAAAAA-TAAG-GTC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AT--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCAGTCATTTTGT-CC-CTTATTTA-AC-TT---------TATATACTT---C---AACTA--TA-C-T--T-TTA--C-TCT-TT-C-TTACCC-TAAAa
gi|25 : AAA-CAAG-ATC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--CAGTCA------T--TT-T--T--CTTA--TTT-TGGCGTCCATTTTTT-CC-CTTATTTAGA-----CTTGTT-GTACATGAAT---C---AACCT--TA-T-T--T-TTA--C-T-T-CT-T-TTATCA-TAAAACca
gi|26 : cTTTTTCAATAAAAG-TAAG-ACC-AAAGCATTCAACAAAATGAG--TATTTGCAGAAA----A-AA--A--GTGT-ATT----T--TT-T--T--CATA--TTT-TGGCGGCCATAAGAT-CC-CTTATTTAAAC-TT-TTT-TT-G--CTTAAAT---C---AACCA--CA-T-T--T-TT
gi|27 : CC-GAAGCATTCAACAAGTTAAGTGTATTTACAG--T----A-AA--C--G-GACA------A--TT-T--T--CATA--TTT-TGGCGACCATTTTGT-CC-TTTATTTAGAC--------TT-GTACTTGAAG---C---A-----------C--T-TTA--C-T-T-AC-T-TTTCCCGTAAAAtacc
gi|28 : tttaatataGCATTCAACACAATGCGTATATTTGCAG--A----A-AA--AAGGTGTTT------T--TT-T--T--CTTA--TTT-TGGAGGTCATTTT-T-CC-CTTAGATGAA-----CTTGCT-GTACATGAAT---C---AACAA--TT-T-G--T-TCA--C-T-TGTT-T-TTACAC-TAAAg
gi|29 : AAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCTTATACTTGCAG--A----A-AA--A--GTGT-ATT----T--TT-T--T--TATA--TTT-TGGTCGCCATTTTGT-CCATTTA-TTATAC-TT-TTTGTT-CT----------------ACCA--TG-T-T--T-TTA--C-c
gi|3 : TTCTAGCTTTGGTGACCTTTCTTTACACATATTTGCATTTTGTTAACAT-AACCAA-TTAACCAAATAT-----AAACTACATAGAAAATATGT----AT--A-CATATAGAATA------TAGATCTTAAG-T-T-G-----TTCAGTTGTA--TGTT---------------TTAAAA-ATGGA--TTT--TTCAT-ATAAA-C-GTGTTTATTGCATTGCTTTGTTAGAGTGA-AAGAC-ACACAACATAAAGAAAAT-----------ACAAC--TATTTC-----------AGTGTGT---ATTAAGTAGAA--GTA--AC--AAGA-AT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TCTCAGAACGATTTATAAATAAAAA-TAAG-ACT-AAAGCATTC-ACCAAATGCGTATATTAGCAG--A----A-AA--A--GTGTCATTT---T--TT-T--T--CATA--TGT-TGACCACCATTTTGT-CC-CTTTTTTAGAC-T---TTA-T-GTACATGAAT---C---AA-CA--TA-T-A--T-TTA--T-TCT-AT-A-TTACTT-TAAAcctaca
gi|30 : aatttgaaacatacataatagtcttaagaacttaacaaaatatgcatgcatattaatgaataaaagcacacccTGCAG--A----A-AA--C--GTGTCA------T--TT-TTTT--CATA--TTT-CGTCGGCCATTTTGT-CC-CTTCTTTAAAC-TT-TTT-T---TACTTGAAC---C---ATCCA--TA-T-T--T-TTA--T-TAT-TT-T-TTAGCC-TTAAACcca
gi|31 : taATATTTG-AG--A----A-AA--A--TTGACA------T--TTAT--T--CTAA--TTT-AAGCGCCCAATTT-T-CC-CTTACTT-GAA-TT-CTT-TT--TACACGAAC---C---AAGCA--TC-T-T--T-TT---C-T-T-TTAT-CTGCCA-TAAAat
gi|33 : c--GTGTCG------T--TT-T--T--CAGA--TTTGTATCAGCCA-TTTGT-CG-CTTATTTGGAC-TT-T---TT-ATACATTAAT---C---AGCTA--TG---T--T-TTA--C-T-C-TT-T-TTATTC-TTAAcac
gi|34 : ------T--TT-T--T--CATA--TTT-TGGCTCTCATTTTGT-CC-TTAATTCAGAC-T---TTA-T-GTACATGAAT---C---AACCA--TA-G-T--T-TTACCC-T-T-TT-T-TTATCC-TAAActat
gi|35 : catTGTAAATAAATA-TACG-GCC-AAAGTATTCAACAAA-TGCGTATATATGCAG--A----A-AA--A--GTGTCAT-----T--TT-T--T--CATA--TTT-TGGCTGTCATTTTGT-Cc
gi|36 : TATAA-TAAAAA-TAGG-GCC-AAAACATTCAACAAAATGAGTATATTTACAG--A----A-AA--A--
gi|4 : TTCTAGCTTTGGATACCTTTCTT-ACACATATTTGCATTCTGTTAGAAT-AACCAAAT-AACCAAATATTTATTAAACTAC-TGTA---TATAT----AT-----ATAGAAAATAGTTTATAAGAGCTTAAC-CAT-AACATATTCAATTGTA--TTTTACAGATT---ATATCTTAAAA-ATTGAA-TTTCGTTTAT-A-----C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-CAGAG-GTATAGTGTGAAGAAGAT-----------ACACA--TATTCC-----------AGTTTGT---ATTAAGGAGAA--GTA--GC--AAAGTAT---A---------ATCCTGAAAC----AT----GTT---CAGTGT----TCTCAGAACTATTTATTAATAAAAA-TAAG-GCC-ATAGC-----ACAAAATGCGTATATTTGCAG--A----A-AA--A--CAGTCA------T--TT-T--T--CTTA--TTT-AAGCGGCCATTTTAT-CC-CTTATTTAGAC-TTACTTGTT-GTACATGAAT---C---AACCA--TA-T-T--C-TTA--C-T-T-AT-T-TTACCA-TA
gi|5 : tTTTAA-ATGAACCAA-T-AACCAGTTATTTAATAAGTTAC-TCTAAAATGTATGCATATT-T-A-TAGAATATAGTTTACTAGAGCTTAAGAT-T-AACATATTAAGTTGCA--TTT-----ATTTCGAGATCTAAAAA-ATGGAA-TTT--TTCAT-AGAAA-C-CTGTTCATTACATTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACAGA--TATTCCTGGTCCAGACCAGTTTGT---ATTCAATAGAA--GTA--GC--AAACTAT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TTTTAGAACCGTTTACAAATAAAAA-TAAG-GCC-AAAGCATTCAAGAACATGCGTATAATTACAG--A----A---------TTTTT------T--TT-T--T--CATT--TTT-TAGCGGCCATTTTGT-CC-CTTA-TTAGA-----CTTGTT-GTACATGAAT---C---AACCA--TC-T-G--T-TTA--CAT-A-GT-T-TTACTC-TAAtcac
gi|6 : taTAAAATATGTAN-NNN--NNNNN-N-------TTGTTTATTGCATAGTTTTGTTAGAATGA-AAGAA-GCATACC-TGCAAAAGAT-----------ACAAA--TATTCA-----------AATTTGT---ATTAAACAGAA--GTA--GC--AAAGTAC---A---------ATCCTGAAAT----AT----GTT---CTGTAT----TTT-AGAATCATTTATCAATAAAAT-TAAG-GTT-GAAGCATTCAACAAAATGC--ATATTTAGAG--A----A-AAGCA--GT-TC-------T--TT-T--T--CTTA--TTT-TCAAGTCCATTTTGT-CC-CTTATTTGGA-----TTTGTT-GTACATAGAA---C---A-----------T--T-TTA--C-T-T-GTAT-TTACCA-TAGAA
gi|7 : TATTCATTTTTT--TTTTCAAGATT---ATATCTTAAAA-ATGGTA--GT--TTCAT-A---A-TATTGTTTATTGAGATGTTTTGTTTGAGTGA-AAGAA-GCCTAAAATATAGAAGATGTCATCCTGAAACATATCTATTAC-------------TTTCT---ATAAATTA-AA--GTAAGGC--AAAaca
gi|7 : TTTGT----TTGAGTGAAA--GAA--GCCTAAAATAT---AGAAGATGTCATCCTGAAAC----AT----ATC---TATTAC----TTTC---------TATAAATTAAAG-TAAG-GCA-AAGGTCTTCAACAAATTGCATATCTTTGCAT--A----A-AA--------TCACTCATTT--TT-T--T--CTTA--TTT-TTGTGGTCATTTTGT-CA-CTTGTTTGAA---T-GTT-TT-GTGCATGTAT---C---ACCCC--CA-TCT--T-TTA--T-T-T-GT-T-TTACCC-TGAAAggtcttcaacaaattgcatatctttgcataaaatcactcatttttttcttatttttgtggtcattttgtcacttgtttgaatgttttgtgcatgtatcacccccatcttttatttgttttaccctgaaaa
gi|8 : tattcattttttttttcaagattatatcttaaaaatggtagtttcataatattgtttattgagatgtTCAGTTGTA--TTTTTAAGATT---TTATCTTTAAA-ATGGAA--TT--TTCATAA---A-T-TTGTTTTTTGTGTTGCTTTGCTCGAGTGA-AATAA-GCTTAATATGTAGAAAAT-----------ACATT--TATTCC-----------GGTTT----------GTAGAA--GTA--GC--AAAATAT---A---------GTTATGAAAC----AT----GT------GTATTACATTCCTGAAACCTTTATCAATGAAA---AAT-GCC-AAAGGAGTCAACAACATGAATACATTTGCAA--T----C-AA--A--CACCCA------T--AT-C--T----TA--TTT-TAGCGGTCATTTTGT-TC-TTTATTCCGAT-TT-TTTGTa
gi|9 : TTATG--TTTTACGAGTT----TATCTTAAAA-ACGGAACTTT--TTTA--A---A-C-TTATTTATAACATTGCTTTGTTCGATTAA-AAGAA-ACATAACATGTAGACGAT-----------ACActttt
gi|9 : TTTGTTCGATTAAA-AGAA--ACA---T--AACATGT---A---------GAC--GATAC----AA------T---CAGTAT----TTTCAGAATCAGTTATAAATAAAAA--ATG-GTC-AAAGC-TTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--A-ATAA------T--TG-T--T--C-----TT----------ATTTTAT-CC-CGTATTTAGA-----CTTGTT-GTACATGAAT---C---AACatcagtattttcagaatcagttataaataaaaaatggtcaaagcttcaacaaaatgcgtatatttgcagaaaaaaataattgttcttattttatcccgtatttagacttgttgtacatgaatcaacacttgtttaa
blockSeqs : GCG C T C C G TT C A A T AC GCAT TACAA AG C CATAACATAT CT TCAGATTA T CT CG ATAAAC . . G GTCATCCTGAA TATC TGGTCCAGACC TCG A CA AG CT TGA GAAGATGTC C TTAC AAAA ATA TACA A . T AA TTCC . GC AGGT CTCATT GT C TT TT T TT G . A CTTACTTGT C CAA . AC TT AC A CC A CTA A A G
blockSeqs : GTG C T A C G AT A T . A AA . ACA AG T ATTAACATAT . ACAGATTA . T . AGAAAC . . A . AC . . T . . . . . C . . . . . . . . . . . TGT TTT G A G . A G . . . TTGATTGT . . . . GT . . T T CTC A . .
blockSeqs : GAT . . A A . C A A . G AA . TTA AG C TTTAACATA . CAAGATTA . T . AAAC . . G . CA . . T . . . . . C . . . . . . . . . . . CG TT . . . . A . . . . CTTTTTGT . . . . TC . . . A GCT A . .
blockSeqs : . . T T . . C . . A A . TTGT . TAAGATTT . T . AATA . . G . GA . . G . . . . . C . . . . . . . . . . . AG TT . . . . A . . . . TTTTTTGT . . . . A . . . . CTT A . .
blockSeqs : . ATTTCGA . T . AAAT . . A . AA . . T . . . . . C . . . . . . . . . . . GT TT . . . . A . . . . CTTTTTG . . . . T . . . . CGT A . .
blockSeqs : . ACGAGTT . N . AAC . . A . TT . . C . . . . . C . . . . . . . . . . . GT T . . . . A . . . . CTTTTTA . . . . T . . . . CAT . . .
blockSeqs : . . . . . AC . . A . A . . T . . . . . C . . . . . . . . . . . GT T . . . . A . . . . CTTTTTT . . . . A . . . . CAT . . .
blockSeqs : . . . N . . . . . T . . . . . A . . . . . . . . . . . GT T . . . . T . . . . CTTTTTT . . . . T . . . . CTT . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . TT T . . . . A . . . . ATTCTTT . . . . A . . . . CTT . . .
blockSeqs : . . . . . . . . . . . . . . . . . . GT . . . . . A . . . . CTTTTT . . . . G . . . . TGT . . .
blockSeqs : . . . . . . . . . . . . . . . TG . . . . . T . . . . TTCTTT . . . . T . . . . CTA . . .
blockSeqs : . . . . . . . . GT . . . . . A . . . . CTCTTT . . . . T . . . . ATT . . .
blockSeqs : . . . . . . . GT . . . . . A . . . . CTTGT . . . . T . . . . CA . . .
blockSeqs : . . . . . . . GT . . . . . A . . . . CTTTT . . . . T . . . . CT . . .
blockSeqs : . . . . . . . CA . . . . . A . . . . CTTTA . . . . T . . . . CG . . .
blockSeqs : . . . . . . . GT . . . . . T . . . . CTTCA . . . . C . . . . TA . . .
blockSeqs : . . . . . . . GT . . . . . A . . . . CTTGT . . . . T . . . . TT . . .
blockSeqs : . . . . . . . GT . . . . . A . . . . CTTGT . . . . T . . . . TA . . .
blockSeqs : . . . . . . . GT . . . . . T . . . . CGTTT . . . . T . . . . TC . . .
blockSeqs : . . . . . . . TT . . . . . A . . . . CTTGT . . . . T . . . . TA . . .
blockSeqs : . . . . . . . GT . . . . . A . . . . CTTTT . . . . T . . . . TT . . .
blockSeqs : . . . . . . . GT . . . . . A . . . . CTTGT . . . . T . . . . CT . . .
blockSeqs : . . . . . . . CA . . . . . T . . . . CTTGC . . . . T . . . . TT . . .
blockSeqs : . . . . . . . GT . . . . . A . . . . CTTTA . . . . G . . . . TA . . .
blockSeqs : . . . . . . . CA . . . . . A . . . . CTTTT . . . . T . . . . AG . . .
blockSeqs : . . . . . . . G . . . . . A . . . . CTTTA . . . . T . . . . TG . .
blockSeqs : . . . . . . . G . . . . . T . . . . CTTGT . . . . . . . . . TG . .
blockSeqs : . . . . . . . T . . . . . A . . . . TTTGT . . . . . . . . .
blockSeqs : . . . . . A . . . . . T . . . . TGTTT . . . . . . . .
blockSeqs : . . . . . . . . . . T . . . . CTTGT . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . CTT . . .
blockSeqs : . . . . . . . . . . . . . . . CT
blockSeqs : . . . . . . . . .
blockSeqCons : CA**** AG CTTAACATAT** TNAGATTA*** T* CTTNT***** ***
originalCons : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATT-A-AATAGAAAATAGTTTACTAGAGCTTAAG-T-T-AACATATTCAGTTGTA--TTTTNCAGATT---ATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGAC-TT-CTTGTT-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
finalCons : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATAT----ATCA----TAGAAAATAGTTTACTAGAGCTTAAGCTTAACATAT--TCAGTTGTA--TTTTTNAGATTA---TATCTTAAAA-ATGGAAT-TT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAG--A----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAGACTTNT-----T-GTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATTCATCTTGTTTGCATTTTAATTTTGTCCAGAAGTGTTTGCCATCAATGAAAAATCATTCAGTTTATACAGAATTGTATATAAACATATTAAA
Unaligned ( gi|37 ): ACATGAATCAACCATATATTTTCTCTTTTTTTTACCTT
Alignments
lowQualScore : 1 111 44444444444 111 11111111 11 222222222 22222222222 1111 22222222222 111111111 111111 1111
lowQualScore : 555 2 3 1 0 8 0 000 1 0 1 8 1 11 22222222222 444 55 1 4 11 333 1 66 5 88888888 4 22 66 555555555 0 4 4 4 11111111111 0000 33333333333 777 2 55 44 44 555 333333333 2 7777 7777 555 7777 1 1 1 2222 1 11 7777 222222 22 2 44 22 2 22 1 1 1 2222 1 1 0 222 222 11 444 11 1 33 4 4444 7 1 1
lowQualScore : ... . . . . . . ... . . . . . .. ........... ... .. . . .. ... . .. . ........ . .. .. ......... . . . . ........... .... ........... ... . .. .. .. ... ......... . .... .... ... .... . . . .... . .. .... ...... .. . .. .. . .. . . . .... . . . ... ... .. ... .. . .. . .... . . .
lowQualScore : 222 5 2 0 6 2 0 000 0 8 0 0 0 44 66666666666 000 88 4 6 88 888 4 99 0 55555555 4 99 11 444444444 7 4 4 4 11111111111 0000 88888888888 000 7 00 66 22 888 333333333 5 1111 1111 888 7777 4 4 3 6666 2 77 9999 222222 88 4 44 88 9 88 2 2 2 6666 2 4 6 222 222 88 666 88 3 22 1 4444 1 4 5
consensus : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATATA-----T-T---ATA---GAAAATAGTTTACTAGAGCTTAAGTTTAACATATTCAGTTGTA--TTT-TTNA-GATT-TATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAG----AC-TTTTTGTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
Reference ( family-1091 ) : NTTCTAGCTTTGGCGGCCTTTCTTTACNCATATTTGCATTCTTTTAACATGAACCAA-T-AACCAAATATTTAATAAACTAC-TNTAAAATATATA-----T-C---ATA---GAAAATAGTTTACTAGAGCTTAAGCTTAACATATTCAGTTGTA--TTT-TTNA-GATTATATCTTAAAA-ATGGAA-TTT--TTCAT-A---A-C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACANA--TATTCC-----------AGTTTGT---ATTAAGTAGAA--GTA--GC--AAAATAT---A---------ATCCTGAAAC----AT----GTT---CAGTAT----TTTCAGAACCATTTATAAATAAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAG----AC-TTNTTGTACATGAAT---C---AACCA--TA-T-T--T-TTA--C-T-T-NT-T-TTACCC-TAAAAC
gi|1 : --AAAATTT---A---------AACCTG---C----AT----TTA---TAGACT----TGTCAGAACCATTTATTTATAAAGA-TATGTCCC-AAAAC-TTTAACAATATGC--ATATTCA-AGA----ATAA--A--ATCACA------T--TA-T--T--C-CA--GTT-TTGCTGCCATTCTTTACC-AATATTTGC----AT-TCTTTTAATATGAAT---CAATAACTA--AA-C-T--T-TTA--
gi|1 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaTTCCAGTTTTG-CTGCCATTCTTTACCAATATTTGCATTCTTTTAATATGAATCAA-T-AACTAAACTTTTAATAAACTGC-TCTCAAATATATA-----T-TAAAATA---GAAAAC--TTTATTAGAGCTTAAGTTTTACA---TC-----------------------CATCTT---A-TTGGTA--TT--TTCATCA---A-T-TTGTTTATTGCATTGCTTTGTTATAGTAATAAAAATGTCTTATATGTAAACTAT-----------AAATA--TATTCC-----------AGTTTGT---ATTAAGCAGAT--GTA--GC---AAATAT---A---------ATCCGGAAAG----GC----ATT---CAataaactgctctcaaatatatattaaaatagaaaactttattagagcttaagttttacatccatcttattggtattttcatcaatttgtttattgcattgctttgttatagtaataaaaatgtcttatatgtaaactataaatatattccagtttgtattaagcagatgtagcaaatataatccggaaaggcattcatcaa
gi|10 : tgcaaacaactagaccctatttaataattaattgtaatgatttcagatcccacagaaattattgcaatactatttaacatatatgctgatgtttatatatttttattacctaccccataatgtttcagtatacttttgtatagaaacgaaagttttcagagctaaaattgttacttcaattatgttgttttgatttagacaaaacgtattattactgatgctttcaaattttcaacacgtatgcttgcatttcatcttgttcgcaattaaactttgctcagaaatgtttgccatcagtgaaacatcattcaatttatatagaactgtatataaacatattaatacaaataaatgacatcgcatcaattatacatatatatgatactatatacaacctattagctaccaacatgtccggtaaacggtattgtccgggaactaaagctcatcagttgtttgtcaatgagattgcaagaagtacatacatgtattacgaaagaattatgaatatattttgttgactaatatcaaaaagaaataatatatgaacgatttgtattaaaagataacaatttgtttcagacatttactcaattgcctgaataaatattaattagtaacggtactattaaatagttcaataatgagacaattttcataaaatttcaaatactactgatataataagaaacaattatactcttaaaaatttaaacctgcatttatagacttgtcagaaccatttatttataaagatatgtcccaaaactttaacaatatgcatattcaagaataaaatcacattaAAGAAGAACAATA--G----AAATAT---A--------------GAAAC----AT----GCT---CAGTAT----TTGCAGAACCATTTATGAATACAAA-TAGA-GCT-AAACCATTCAACTAATTGCGTATATTTGCATA----A-AA--A--CGGTAA------T--TT-T--T--CTTA---TT-TGGCGGCCATTTTGT-CT-CTTATTTAG----AC-TTGTTGTACATGAAT---C---AATCC--TC-A-T--T-TTA--C-T-T-TC-T-GTAACA-TAAtcaa
gi|11 : TTTATAAATAAGAA-TAAA-GCC-AAAGCATTCGGCGAAATGAGTATATTTGTAGA----A-AA--A--AGGTCA------T--TTCT--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAG----AC-TTTTTGTACATGTAT---C---AACCA--T--T-G--T-TTAT-C-T-C-AT-TATTATCC-TAAAAC
gi|12 : TATAAATAAAAT-TAAA-CCC-AAAACATTCCACAAAATGAGTATATTTGCAGA----A-AT--A--GTGTCAT-----T--TT-T--T--CATA--TTT-TTGCGACCATTTTGA-CC-CTAATTTAG----ACTTTTTTGTAAACAAAT---C---AACTA--TA-T-T--T-TTA--T-T-C-TTAT-CTATCC-TAAAACat
gi|13 : TTTATAAATAAAAA-TAAG-GCA-AAAGCATTAAACAAAATGAGTATATTTGCCAA----A-AA--AT-GTATT-------T--TT-T--T--TATA--TTT-TGGCAGCCATTTTGT-GC-CTCATTGAG----AT-TGATTGTTCTTATAT-------AACCA--TA-A-T--T-TTA--T-TCT-AT-T-TTACCC-gt
gi|14 : TATAAATAAATA-TACG-GCC-AAAGCATTTACCAAA-TGCGTATATTTCCA-A----G-AA--A--GTGTCA------TGTTT-T--T--CATA--TTT-TGGCTGTCATTTTGT-CC-CTAATTTAG----AC-TTTATGTACATGAAG---C---AACCA--TA-T-A--T-TTA--C-TCT-CT-G-TTACCC-TAAAACtcaaca
gi|15 : TTATGAATATATA-TACG-GCA-AAATCATTCACCAAA-TGCGTTTATTTACGGC----A-AA--A--GTATCA------T--TT-T--T--CATA--TTT-TGGCTGTTATTTTGC-CC-CTTGTTTAG----AC-TTCATGTACATAAAT---C---AACCA--TA---T--T-TCA--C-TGC-TT-T-TTACCC-TAAAACa
gi|16 : TTATAAATAAAAAATAAA-GCC-AAAGCTTTCAACAAAATGTGTATATTT-CAGT----A-AA--A--GTGTAA------TG-TT-T--T--CATA--TTT-TGGAGGCCATTTTGT-CC-CTTATTTAG----AC-TTTTTGTATTTATAT---C---AA-CA--TATT-T--T-TTA--C-TCT-TT-T-TTACCC-TAAAAat
gi|17 : ATAAATGAAAA-TAAG-CCC-AAATCATTTAACAAGATACATATATTTGCAGA----A-AA--A--TTGTCA------T--TT-T--TT-CTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAG----AC-TTGTTGTACATGAAT---C---AACCA--TT-A-T--T-TTA--C-T-CGTT-T-TTAACC-TAAAA
gi|18 : TTTATAAACAAAAC-TAGG-GCA-AAAACATTCAACAAAATGCG-ATATTTGCTGT----A-AA--A--GTGTAT------T--TT-T--T--CATA--TTT--AACGGCCATTTTAA-TC-CTTATTTAG----AC-TTGTTGTACTTAAAT---C---CACCA--TA-G-C--T-TTG--C-T-CATT-T-TTACCC-TAACACt
gi|19 : TATAAATAAATA-TAAG-GCC-AAAACATTCAACAAAATGCGTATATTTGCAGA----A-AA--C--G-GTTA------T--TT-TG-T--CATA--TGC-AGGCGGCCATTTTGT-CC-CTTATTTAG----AC-GTTTTGTACATTAAT---C---AA-TA--TC-T-G--T-TTA--C-T-C-GTAT-TTACCA-TAAAAC
gi|2 : A--GC--AAAATATTGAA---------ATT-TGAAACTTACATAAAAGTTATACAGACG----TTTCAGAACCAATTAATCATAAAAA---AG-GTCTCAAGAATTTAACAATAGATATATGTGTGCACATTCCA-GC--A------CA------T--TC-T--T--C-TAG-CTT-TGGCGGCC-TTTTA--CC-CATACTTGC----AT-TCTTTTAACATGAACCAAC---AACCAACTA-T-T--TAATA--CAT-T-AC-T-TTAa
gi|2 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaTTCTAGCTTTGGCGGCCTTT---TACCCATACTTGCATTCTTTTAACATGAACCAA-C-AACCAACTATTTAATACATTAC-TTTAACATATATA-----T-T---ACAATGGAAAATAGTTTACTAAAGCTGAAGTTTAACATA----GTTGTACTTTT-TTCA-GATTATATCGTAAAA-AATGAA-TTT--T-CAT-A---AAC-TTGTTT--TGCATTGCTTTGTTAGAGTGA-AAGAT-GCATAACGTATAGAAGAT-----------ACA-A--TATTTT-----------AGTTTCT---ATTAAGTAGAA--GTA--GT--AAAGTAT---A---------ACCCTGAAAC----AT----GTT---CAATTT----TTTCAGAACCATTTATAAATAAAacatatatattacaatggaaaatagtttactaaagctgaagtttaacatagttgtacttttttcagattatatcgtaaaaaatgaattttcataaacttgttttgcattgctttgttagagtgaaagatgcataacgtatagaagatacaatattttagtttctattaagtagaagtagtaaagtataaccctgaaacatgttcaattttttcagaaccatttataaataaa
gi|20 : gttaattataattagtatgttgtattagtttataaatgtatcatgaatttatatttatgtaaaattgtaaatatatatacatttttcttgctgtaacattatgaataatttataatacaatgttgttgtactcatgttgaactctcctatatggagaaaataaagattatatatatattcacatcccaacacttatacatatataggatactacataaaataacttaatatgttatgttcgatgtacccagtaaccggtactatctgggaactactacagatatagttatttctcaaaaattggattacatatagcacaggcaatatggatatatgttgttgattaatattcatcagaaataatttatgaaactatttgtattatagatcacaaatggatttagaaaccaatagttgaatattgatttaaaacatttttgataaaatattaaacacttttgatttcacaagcaaaatattgaaatttgaaacttacataaaagttatacagacgtttcagaaccaattaatcataaaaaaggtctcaagaatttaacaatagatatatgtgtgcacattccagcacattcACAAATACAAA-TAAG-CCC-AAGTCTTTTAACAAAATACATATATTTGCAGA----A-AA--A--TGGCCA------T--TT-T--TTTCTTA--GTT-TGGCGGCCATTTTGT-CC-CTTATTTAG----AC-TTGTTGTACACGAAT---C---AAC----TA-T-TACT-TTA--C-T-CATT-T-TTAACC-TAAAA
gi|21 : TTT-TAGATAAAAT-TAAG-GCC-AAAGCATTCAACAAAATGTGTTTTTTTGCAGA----A-AA--A--GTGT-ATT----T--TT-T--T--CATA--ATT-TGACAGTCATTTTGT-CC-CTTATTTAG----AC-TTTTTA-ACTTGAAT---C---TACCA--TAGT-T--T-TTA--T-T-T-TTAT-TTACCC-TAA
gi|22 : TATAAATAAAAA-TAAG-ACC-AAAGCATTCAACAAAATGTGTATATTTGCAGA----A-AA--A----GCCAT-----T--TT-T--T--CATATTTTT-TTATGGCCATTTTGT-CC-CTTATTTCA----AC-TTTTTGTACTTAAAT---C---AACCA--CA-T-T--T-TTA--CTT-T-AT-T-TTACC
gi|23 : AATAAAAA-TAAG-GCC-AAAGTATTCAACGAAATAAATATATTTGCGGG----A-AA--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCGGCCATTTTGT-CC-CTTATTTAG----AC-TCTTTTTACTTGAAT---C---AACCG--TA-T-T--T-TTA--T-TCT-TT-T-TTACCC-TAAAACggaa
gi|24 : TATAAATAAAAA-TAAG-GTC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-AT--A--GTGTCA------T--TT-T--T--CATA--TTT-TGGCAGTCATTTTGT-CC-CTTATTTA-----AC-TTTATATAC-T---T---C---AACTA--TA-C-T--T-TTA--C-TCT-TT-C-TTACCC-TAAAa
gi|25 : AAA-CAAG-ATC-AAAGCATTCAACAAAATGCGTATATTTGCAGA----A-AA--A--CAGTCA------T--TT-T--T--CTTA--TTT-TGGCGTCCATTTTTT-CC-CTTATTTAG----AC-TTGTTGTACATGAAT---C---AACCT--TA-T-T--T-TTA--C-T-T-CT-T-TTATCA-TAAAACca
gi|26 : cTTTTTCAATAAAAG-TAAG-ACC-AAAGCATTCAACAAAATGAGTAT--TTGCAGA----A-AA--AAAGTGT-A------T--TT-TTTT--CATA--TTT-TGGCGGCCATAAGAT-CC-CTTATTTAA----AC-TTTTTTTGCTTAAAT---C---AACCA--CA-T-T--T-TT
gi|27 : CC-GAAGCATTCAACAAGTTAAGTGTATTTACAGT----A-AA--C--G-GACA------A--TT-T--T--CATA--TTT-TGGCGACCATTTTGT-CC-TTTATTTAG----AC----TTGTACTTGAAG---C---A-----------C--T-TTA--C-T-T-AC-T-TTTCCCGTAAAAtacc
gi|28 : tttaatataGCATTCAACACAATGCGTATATTTGCAGA----A-AA--AAGGTGTTT------T--TT-T--T--CTTA--TTT-TGGAGGTCATTTT-T-CC-CTTAGATGA----AC-TTGCTGTACATGAAT---C---AACAA--TT-T-G--T-TCA--C-T-TGTT-T-TTACAC-TAAAg
gi|29 : AAAAA-TAAG-GCC-AAAGCATTCAACAAAATGCTTATACTTGCAGA----A-AA--A--GTGT-ATT----T--TT-T--T--TATA--TTT-TGGTCGCCATTTTGT-CCATTTA-TTAT----AC-TTTTTGT-------T---C---TACCA--TG-T-T--T-TTA--C-c
gi|3 : TTCTAGCTTTGGTGACCTTTCTTTACACATATTTGCATTTTGTTAACAT-AACCAA-TTAACCAAATAT-----AAACTACATAGAAAATATGTA-----TAC---ATA---TAGAATA------TAGATCTTAAGTT------GTTCAGTTGTA--TGT-TT-------------TAAAA-ATGGA--TTT--TTCAT-ATAAA-C-GTGTTTATTGCATTGCTTTGTTAGAGTGA-AAGAC-ACACAACATAAAGAAAAT-----------ACAAC--TATTTC-----------AGTGTGT---ATTAAGTAGAA--GTA--AC--AAGA-AT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TCTCAGAACGATTTATAAATAAAAA-TAAG-ACT-AAAGCATTC-ACCAAATGCGTATATTAGCAGA----A-AA--A--GTGTCATTT---T--TT-T--T--CATA--TGT-TGACCACCATTTTGT-CC-CTTTTTTAG----AC-TTTATGTACATGAAT---C---AA-CA--TA-T-A--T-TTA--T-TCT-AT-A-TTACTT-TAAAcctaca
gi|30 : aatttgaaacatacataatagtcttaagaacttaacaaaatatgcatgcatattaatgaataaaagcacacccTGCAGA----A-AA--C--GTGTCA------T--TT-TTTT--CATA--TTT-CGTCGGCCATTTTGT-CC-CTTCTTTAA----AC-TTTTTTTACTTGAAC---C---ATCCA--TA-T-T--T-TTA--T-TAT-TT-T-TTAGCC-TTAAACcca
gi|31 : taATATTTG-AGA----A-AA--A--TTGACA------T--TTAT--T--CTAA--TTT-AAGCGCCCAATTT-T-CC-CTTACTTGA----AT-TCTTTTTACACGAAC---C---AAGCA--TC-T-T--T-TT---C-T-T-TTAT-CTGCCA-TAAAat
gi|33 : c--GTGTCG------T--TT-T--T--CAGA--TTTGTATCAGCCA-TTTGT-CG-CTTATTTGG----AC-TTTTTATACATTAAT---C---AGCTA--TG---T--T-TTA--C-T-C-TT-T-TTATTC-TTAAcac
gi|34 : ------T--TT-T--T--CATA--TTT-TGGCTCTCATTTTGT-CC-TTAATTCAG----AC-TTTATGTACATGAAT---C---AACCA--TA-G-T--T-TTACCC-T-T-TT-T-TTATCC-TAAActat
gi|35 : catTGTAAATAAATA-TACG-GCC-AAAGTATTCAACAAA-TGCGTATATATGCAGA----A-AA--A--GTGTCAT-----T--TT-T--T--CATA--TTT-TGGCTGTCATTTTGT-Cc
gi|36 : TATAA-TAAAAA-TAGG-GCC-AAAACATTCAACAAAATGAGTATATTTACAGA----A-AA--A--
gi|4 : TTCTAGCTTTGGATACCTTTCTT-ACACATATTTGCATTCTGTTAGAAT-AACCAAAT-AACCAAATATTTATTAAACTAC-TGTA---TATATA-----T-----ATA---GAAAATAGTTTATAAGAGCTTAACCATAACATATTCAATTGTA--TTT-TACA-GATTATATCTTAAAA-ATTGAA-TTTCGTTTAT-A-----C-TTGTTTATTGCGTTGCTTTGTTAGAGTGA-CAGAG-GTATAGTGTGAAGAAGAT-----------ACACA--TATTCC-----------AGTTTGT---ATTAAGGAGAA--GTA--GC--AAAGTAT---A---------ATCCTGAAAC----AT----GTT---CAGTGT----TCTCAGAACTATTTATTAATAAAAA-TAAG-GCC-ATAGC-----ACAAAATGCGTATATTTGCAGA----A-AA--A--CAGTCA------T--TT-T--T--CTTA--TTT-AAGCGGCCATTTTAT-CC-CTTATTTAGACTTAC-TTGTTGTACATGAAT---C---AACCA--TA-T-T--C-TTA--C-T-T-AT-T-TTACCA-TA
gi|5 : tTTTAA-ATGAACCAA-T-AACCAGTTATTTAATAAGTTAC-TCTAAAATGTATGCATATT-T---ATA---GAATATAGTTTACTAGAGCTTAAGATTAACATATTAAGTTGCA--TTTATTTC-GAG---ATCTAAAAA-ATGGAA-TTT--TTCAT-AGAAA-C-CTGTTCATTACATTGCTTTGTTAGAGTGA-AAGAA-GCATAACGTGTAGAAGAT-----------ACAGA--TATTCCTGGTCCAGACCAGTTTGT---ATTCAATAGAA--GTA--GC--AAACTAT---A---------ATCCTTAAAC----AT----GTT---CAGTAT----TTTTAGAACCGTTTACAAATAAAAA-TAAG-GCC-AAAGCATTCAAGAACATGCGTATAATTACAGA----A---------TTTTT------T--TT-T--T--CATT--TTT-TAGCGGCCATTTTGT-CC-CTTA-TTAG----AC-TTGTTGTACATGAAT---C---AACCA--TC-T-G--T-TTA--CAT-A-GT-T-TTACTC-TAAtcac
gi|6 : taTAAAATATGTAN-NNN--NNNNN-N-------TTGTTTATTGCATAGTTTTGTTAGAATGA-AAGAA-GCATACC-TGCAAAAGAT-----------ACAAA--TATTCA-----------AATTTGT---ATTAAACAGAA--GTA--GC--AAAGTAC---A---------ATCCTGAAAT----AT----GTT---CTGTAT----TTT-AGAATCATTTATCAATAAAAT-TAAG-GTT-GAAGCATTCAACAAAATGC--ATATTTAGAGA----A-AAGCA--GT-TC-------T--TT-T--T--CTTA--TTT-TCAAGTCCATTTTGT-CC-CTTATTTGG----AT-TTGTTGTACATAGAA---C---A-----------T--T-TTA--C-T-T-GTAT-TTACCA-TAGAA
gi|7 : TATTCATTTTTT--TTT-TCAA-GATTATATCTTAAAA-ATGGTA--GT--TTCAT-A---A-TATTGTTTATTGAGATGTTTTGTTTGAGTGA-AAGAA-GCCTAAAATATAGAAGATGTCATCCTGAAACATATCTATTAC-------------TTTCT---ATAAATTA-AA--GTAAGGC--AAAaca
gi|7 : TTTGT----TTGAGTGAAA--GAA--GCCTAAAATAT---AGAAGATGTCATCCTGAAAC----AT----ATC---TATTAC----TTTC---------TATAAATTAAAG-TAAG-GCA-AAGGTCTTCAACAAATTGCATATCTTTGCATA----A-AA--------TCACTCATTT--TT-T--T--CTTA--TTT-TTGTGGTCATTTTGT-CA-CTTGTTTGA----AT-GTTTTGTGCATGTAT---C---ACCCC--CA-TCT--T-TTA--T-T-T-GT-T-TTACCC-TGAAAggtcttcaacaaattgcatatctttgcataaaatcactcatttttttcttatttttgtggtcattttgtcacttgtttgaatgttttgtgcatgtatcacccccatcttttatttgttttaccctgaaaa
gi|8 : tattcattttttttttcaagattatatcttaaaaatggtagtttcataatattgtttattgagatgtTCAGTTGTA--TTT-TTAA-GATTTTATCTTTAAA-ATGGAA--TT--TTCATAA---A-T-TTGTTTTTTGTGTTGCTTTGCTCGAGTGA-AATAA-GCTTAATATGTAGAAAAT-----------ACATT--TATTCC-----------GGTTT----------GTAGAA--GTA--GC--AAAATAT---A---------GTTATGAAAC----AT----GT------GTATTACATTCCTGAAACCTTTATCAATGAAA---AAT-GCC-AAAGGAGTCAACAACATGAATACATTTGCAAT----C-AA--A--CACCCA------T--AT-C--T----TA--TTT-TAGCGGTCATTTTGT-TC-TTTATTCCG----AT-TTTTTGTa
gi|9 : TA--TGT-TTTACGAGTTTATCTTAAAA-ACGGAACTTT--TTTA--A---A-C-TTATTTATAACATTGCTTTGTTCGATTAA-AAGAA-ACATAACATGTAGACGAT-----------ACActttt
gi|9 : tTTTGTTCGATTAAA-AGAA--ACA---T--AACATGT---A---------GAC--GATAC----AA------T---CAGTAT----TTTCAGAATCAGTTATAAATAAAAA--ATG-GTC-AAAGC-TTCAACAAAATGCGTATATTTGCAGA----A-AA--A--A-ATAA------T--TG-T--T--C-----TT----------ATTTTAT-CC-CGTATTTAG----AC-TTGTTGTACATGAAT---C---AACatcagtattttcagaatcagttataaataaaaaatggtcaaagcttcaacaaaatgcgtatatttgcagaaaaaaataattgttcttattttatcccgtatttagacttgttgtacatgaatcaacacttgtttaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): ATTCATCTTGTTTGCATTTTAATTTTGTCCAGAAGTGTTTGCCATCAATGAAAAATCATTCAGTTTATACAGAATTGTATATAAACATATTAAA
Unaligned ( gi|37 ): ACATGAATCAACCATATATTTTCTCTTTTTTTTACCTT