lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3 1111111111111 1111111111 11111 000000000000000000000000000000000000000000000000000000000000000000000000 111111111 11 111111 1111111 11 222222222222222
lowQualScore : 3 0 2 0 1111111111111 777 33 2222222222 6 66666 999999 4 3 333333333333333333333333333333333333333333333333333333333333333333333333 222222222 66 3 888888 3 0000000 22 888888888888888
lowQualScore : . . . . ............. ... .. .......... . ..... ...... . . ........................................................................ ......... .. . ...... . ....... .. ...............
lowQualScore : 9 1 9 2 6666666666666 888 99 5555555555 0 66666 666666 8 6 000000000000000000000000000000000000000000000000000000000000000000000000 333333333 66 3 777777 3 8888888 33 000000000000000
consensus : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTAT--TTCCCAT----------AAACAAAT---AACTAT------TGTACTGTGTTCT-ATGCCAAAA------------TATANNGATCNGNNTGNNTNCNNTNNNANNNNNNNTGANNGCCNNGNNNNNNTTTCAGNCTCCA---------AAGTGAATA-AGATACTGAACCCAAANGTTGTAN--TGTTCTAT-AT-------GA-TACACA-TTAAC---A--ANAAAATAG
Reference ( gi|9 ) : GGATCAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGCAT--TTCCCAT----------AAACAAGT---TACTAT------TATACTGTGTTCT-ATGCCAAAA------------CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCA---------AAGTGAATT-AGATACTGAACCCAAAAGTTCTAA--TGTTCTAT-AT-------GA-CACACA-GTAAC---A--ACAAAATAG
gi|3 : GGA-CAAAGGGGCAAGTA-ATGTTCATACAGGAATGTTA---A-TACAATATAT--TTCCCAT----------AAACAAAT---AACTGT------TGTACTGTGTTCT-GTGCCAAAA------------AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCA---------AAGTAAATA-AGTCACTGAACCCAAAAGTTGT-A--TGTTCCATCAT-------GA-AACAT---TAACAG-A--AAAAAATAG
gi|5 : tgctaagcccggtgtcctaataagtatgGGA-CAATGGCGCCAGGA-ATGGTAAAATAA------TG---A-TGTAAAGTAT--TTCCCGT----------AAACAAAT---ATCTAC------TGTACTGTGTTCT-ATGCTAAAA------------TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCAAAAATGAATAAGAGAATA-AGATACAGAACCCAAAAGTTGTTACTTGTTCTAA-AT-------GA-TACAC--TTAAT---A--AAAAAAaccaactatttggttggaaa
gi|1 : ggggtagctcggcaagtgctcaagaagatatggGGAT-AATGGGGCCAAGA-ATGTTTTAACAA------TT---A-TATAAGGTGT--TTCAAAT----------AAACAAAT---AACTAT------TGTATTCTGTTCT-TTGCCAAAATTAAAAAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCA---------CAGT-AATTAAGATACTGAACCTAAATGTTATGT--TGTTCTAT-AT-------GA-AACAT---CAAC---AGGATAAAACAGaa
gi|17 : tgataaagttgaaaaaaaaatggaaagagttatttcatttaatttaaaagaaattgaaattgggtagtagggataaatgtgtgaatgtgtctatagggggtgtctggggtgaggcaataaagtttagatgagcagatcataatatttagtacaaaacaaaatttaaaaaagaaaaagaaaaaaaaagagggaatgttttggtatgtgcccacctagatatgGGA-CAATGCTGCCAGGA-AT-------CAA------TA---G-TACAAGGTTT--TTCCCAC----------CAACAAAT---AACTAT------TGTACTGTGTTCT-ATGCagccaacatttggttataaat
gi|8 : aagcaggggaatgttcgacagtttccaaagtaggtatgGGA-CATTGAGGCT-GGA-ATATCCAAACAA------TG---A-TATAAAGTGT--TTCCCAT----------tta
gi|14 : gaagtagatatgGGA-CATTGGTGTCAGGA-ATATTCAAACAA------TA---GTTACAA--CATAATTCCCATATGTTTCCCAAAACAAAT---AACCAT------TGTCCAGTGTTCTAATGCCAAActgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaaagtgattaagatactgaacccaatcgttgtaatgttctatatgattatagatacacattaataaaaaaataacaaagccaacattcagttgaaaat
gi|12 : agtcaatatgGGA-CAATGGGGCC--GACATGTTCAGACAA------TG---A-TACAAAGTAT--TTCTCAT----------Agtaattttcataaatctggcttcaaactgaataagatactgaaccca
gi|19 : acgGGA-CAATGAAGCCAGAC-ATGTAAAAAAAAA-----TA---G-TACAAGATAT--TTCCCAA----------AAAGAAAT---AACAAT------TGTACTTTGTTttttgcgttgttatcaataccaacattttacaaagctacatacatttaaaaatgtttgatacaaatataaaaaaaaaacaattttggctcaagagtgaacaaaatactaaac
gi|6 : gggatgcttgtgtaggtacaaagtaggtatgCAATGGAGCCAGGA-ATATTCAAACAA------TC---A-TATAAGGTAT--TTCCCAG----------AAACACAT---T-TTAC------TGTTCTGTGTTC--ATGCCAAAA------------TATATCAATCTGGATACATTTTATATAATACCAACTGACAGTTTTGGTCACTT--------------------AAGTGAAAA-AGATACTGTACCCAAAAGTTGTTT--TGTTCTAT-AT-------GA-AACAT---TAAC---A----GAAATA
gi|2 : gtgatgctcaggcaggtgcccaagtaggtctgaaaCAGTGGGACCGGGT-ATATTCAAACAA------TG---A-TACAATATAT--TTCCCAA----------AAACAAAT---AATTAT------TGTACTGTGTTTT-ATACCAAAA------------T-TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNN-NNNNNNNNNNNNCAAACCTTTTAT--TGTTCTAT-AT-------GA-TTCCCATGTATA---A--ATAAAATAGaacagtcaatatttggttgaaa
gi|11 : gaagaggaggagtatgggaggtatccaagtatatgtttaaCAATGGGGACAG-A-ATGTTCA------------------TACA-----T--TTAACAT----------AAACAAATACCTATAAT------TGTACTTTGTTCT-TTGCCGAAA------------TATccaacatttggttgaaaat
gi|7 : aaaactgggagttggggatgtgtaacgctcgggagatacccaaataggcatgagaAATGAGGCCGGGC-ATGTATAAATAA------TA---A-TACAAGGTAC--TTCCCAT----------AAACAAAT---T----T------TAAACTAT----T-GTACCAAAA---------------AAAGATCAACCTGGCTACATTTACAACAGTTATAAACACCAAGTAACAGTTTCAGGCTCCA---------AAGTGAATA-AGCTAATGAATTCAA-------------TTCTAT-AT-------GATTACACA-TTAAT---A--AAAAAATAGatcaaaataaatacccaataacagttttggacttcaaaatgaataa
gi|4 : tgacaggtttccaagtagatatatatgagaaATGGGACCAGGA-ATGTTCAAATAA------TA-----CACGATATAT--TTCACAT----------AAACAAAT---GGCTAT------TGTACTGTGTTCT-ATGCCAAAA------------TATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCA---------GAGTGAATT-TAATGCTGAACACAAACGTTTTAA--CGTTCTAT-AT-------AA-TATACA-TTAAG---A--ACaaccaacacttggatgaaaa
gi|20 : tagggacaagtgctctgacaggtgccatagtgggtCCAGGA-ATGTTCAGTCAA------TATAAA-TACAAGGTTT--TTCCTAT----------AAACAAAT---TACTATTGTACATGTACCGTATTCT-ATGCTAAAA------------TAtagagcaaacatttggttgggaat
gi|8 : gccgtattgtataTCCA---------AAGTGATTA-AGATACTGAACCCAATCGTTGTAA--TGTTCTAT-ATGATTATAGA-TACACA-TTAAT---A--AAAAAATA
gi|14 : gaagtagatatgggacattgaggctggaatatccaaacaatgatataaagtgtttcccatctgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCA---------AACTGAATA-AGATACTGAACCCAacaaagccaacattcagttgaaaat
gi|13 : agtcaatatgggacattggtgtcaggaatattcaaacaatagttacaacataattcccatatgtttcccaaaacaaataaccattgtccagtgttctaatgccaaagtaattttcataaatctggcTCCA---------GAGTGAATA-AGATACAGAACCCAAATGTTTTAC--TATTCTAA-AT-------GA-TACACA-TGAACAG-A--AAAAAATAG
gi|16 : atttttttattatgtttaatacaaaatatatcaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCA---------AAGTGAATA-CGATACTGAAGTCAAAAGTTGTAC--TGTTTTCT-AT-------GA-TGTACA-TTAAT---A----AAAATAGagccagtatttgaa
gi|18 : aacattagattacatgaatatccaacatcagtcttggttTCCA---------AAGTGAAT----A-AC--AACCCAAAAGTTGAAA--TGTTCTAC-AC-------GA-TACACA-TCAAC---A--A-AAAATAGatacaacatttgac
gi|15 : ttcctatcaataccaaataacagcaatgggcTCCA---------AAATACATA-AGATACTGAACCCAAAAGATGTAA--TTTGCTAT-AT-------GA-AATAT---TAACAGAA--AC-AAATAGagccaacatttgg
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AATAACGCTGAAACAACACATAGTATTTCATTTAAGTTAAACACAATTTTCAAAAAGGGTTAGTGGGAGTGTTGAGTCAAATGGAGAGGGGGTGAGTGGATATATAGTGGCGGGGGAGGGTAATAAAGTTGAATTTCATTTAATACGCAACAAAACATATACAATAAAATAAAATAAAATTGTTTGGGCG
Unaligned ( gi|21 ): GCCAAGTAGATATGGAACAATGGACCTGGCAAATTCAAACATTGATTCCAAGTTTTTTCAATCTGTGATTTATT
Unaligned ( gi|22 ): TAGCCAAATAGATATGGGACAATTAAATTCAATCAATGATACAAAGTTAAATAATTTCCAATCTGGGATCTAT
Unaligned ( gi|23 ): GGGAGCGGTAATAAAGTTGAAAGAGGACAAAACAAAATTTTAAAAAATAATAAAATAAAAACAAAATGGGA
Unaligned ( gi|24 ): TGTCGGGCAGCGGGGGTACTGAAGTTGAAAAGGGGCAGCGTATTTCAATACCA
Unaligned ( gi|25 ): ACCTGGCAAATTCAAACAATGATACAACGTTTTTCCAATCTGTGGTCTATT
Unaligned ( gi|26 ): ATGATACAAAGTTTTTCCAATCTGTGATCTATTT
Alignments
lowQualScore : 1111111111 111111 111111 333333333333333333333333333333333333333333 111111111 1111111 1111
lowQualScore : 3 2 999999 555555 2 0000000000 6666 444444 3 000000 222 666666666666666666666666666666666666666666 22 1 888888 111111111 2 33 88 3 0000000 2222 3 88 6666 99
lowQualScore : . . ...... ...... . .......... .... ...... . ...... ... .......................................... .. . ...... ......... . .. .. . ....... .... . .. .... ..
lowQualScore : 1 7 777777 666666 4 9999999999 5555 222222 3 555555 999 444444444444444444444444444444444444444444 99 0 222222 444444444 1 99 22 1 0000000 3333 1 55 7777 22
consensus : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------ATATCGATCNGNNTGNNTNCNNTNNNANANNANATGAANACCNAGCANCAGTTTCGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACAT-TAAC--A--AAA--AAATAG
Reference ( family-1089 ) : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------ATANNGATCNGNNTGNNTNCNNTNNNANNNNNNNTGANNGCCNNGNNNNNNTTTCAGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAANGTTG-TA-NTGTTCTAT-AT-------GA-TACACAT-TAAC--A--ANA--AAATAG
gi|1 : GGA-TAATGGGGCCAAGA-ATGTTTTAACAA------TT---A-TATAAGGTGTTTCAAAT----------AAACAAAT----AACTAT------TGTATTCTGTTCT-TTGCCAAAATTAAAAAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCA---------CAGTAATTAAGATACTGAACCTAAATGTTA-TG-TTGTTCTAT-AT-------GA--A-ACAT-CAAC--AGGATA--AAACAG
gi|11 : tgataaagttgaaaaaaaaatggaaagagttatttcatttaatttaaaagaaattgaaattgggtagtagggataaatgtgtgaatgtgtctatagggggtgtctggggtgaggcaataaagtttagatgagcagatcataatatttagtacaaaacaaaatttaaaaaagaaaaagaaaaaaaaagagggaatgttttggtatgtgcccacctagatatgGA-CAATGGGGACAG-A-ATGTTCA------------------TACA-----TTTAACAT----------AAACAAAT----ACCTATAAT---TGTACTTTGTTCT-TTGCCGAAAT------ATATCAAagccaacatttggttataaat
gi|12 : aaaactgggagttggggatgtgtaacgctcgggagatacccaaataggcatgaGGA-CAATGGGGCC--GACATGTTCAGACAA------TG---A-TACAAAGTATTTCTCAT----------Aaataaatacccaataacagttttggacttcaaaatgaataa
gi|13 : acg------TCCA---------GAGTGAATAAGATACAGAACCCAAATGTTT-TA-CTATTCTAA-AT-------GA-TACACAT-GAACAGA--AAA--AAATAGttttgcgttgttatcaataccaacattttacaaagctacatacatttaaaaatgtttgatacaaatataaaaaaaaaacaattttggctcaagagtgaacaaaatactaaac
gi|14 : atttttttattatgtttaatacaaaatatatcaatatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGA-CATTGGTGTCAGGA-ATATTCAAACAA------TA---GTTACAACATAATTCCCATATGTTTCCCAAAACAAAT----AACCAT------TGTCCAGTGTTCTAATGCCAAAGT------Aagccagtatttgaa
gi|14 : agtcaatatgGGC------TTCA---------AACTGAATAAGATACTGAACCCAattttcataaatctggcttcaaactgaataagatactgaaccca
gi|15 : agtcaatatgggacattggtgtcaggaatattcaaacaatagttacaacataattcccatatgtttcccaaaacaaataaccattgtccagtgttctaatgccaaagtaattttcataaatctTTTTGGAC------TCCA---------AAATACATAAGATACTGAACCCAAAAGATG-TA-ATTTGCTAT-AT-------GA--A-ATAT-TAAC--A--GAAACAAATAG
gi|16 : acagttcatataaatatccaaatataaAGATTACATGAATATCCAACATCAGTCTTGGTT------TCCA---------AAGTGAATACGATACTGAAGTCAAAAGTTG-TA-CTGTTTTCT-AT-------GA-TGTACAT-TAAT--A----A--AAATAGagcaaacatttggttgaa
gi|17 : aacattGGA-CAATGCTGCCAGGA-AT-------CAA------TA---G-TACAAGGTTTTTCCCAC----------CAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCatacaacatttgac
gi|18 : aagcaggggaatgttcgacagtttccaaagtaggtatgGGC------TCCA---------AAGTGAATAA----C--AACCCAAAAGTTG-AA-ATGTTCTAC-AC-------GA-TACACAT-CAAC--A--A-A--AAATAGtta
gi|19 : ttcctatcaataccaaataacagcaatgGGA-CAATGAAGCCAGAC-ATGTAAAAAAAAA-----TA---G-TACAAGATATTTCCCAA----------AAAGAAAT----AACAAT------TGTACTTTGTTagccaacatttgg
gi|2 : gggatgcttgtgtaggtacaaagtaggtatgA-CAGTGGGACCGGGT-ATATTCAAACAA------TG---A-TACAATATATTTCCCAA----------AAACAAAT----AATTAT------TGTACTGTGTTTT-ATACCAAAAT-------TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNN---------NNNNNNNNNNNNNNNNNNNNNCAAACCTTT-TA-TTGTTCTAT-AT-------GA-TTCCCATGTATA--A--ATA--AAATAG
gi|20 : gaagaggaggagtatgggaggtatccaagtatatgtttaCCAGGA-ATGTTCAGTCAA------TATAAA-TACAAGGTTTTTCCTAT----------AAACAAAT----TACTATTGTACATGTACCGTATTCT-ATGCTAAAAT------Accaacatttggttgaaaat
gi|25 : gccgtattgtataTTCAAACAA------TG---A-TACAACGTTTTTCCAAT----------
gi|3 : acctggcaaaGGA-CAAAGGGGCAAGTA-ATGTTCATACAGGAATGTTA---A-TACAATATATTTCCCAT----------AAACAAAT----AACTGT------TGTACTGTGTTCT-GTGCCAAAAA------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG------TCCA---------AAGTAAATAAGTCACTGAACCCAAAAGTTG-TA--TGTTCCATCAT-------GA--A-ACAT-TAACAGA--AAA--AAATAGctgtggtctatt
gi|4 : tgctaagcccggtgtcctaataagtatgATGGGACCAGGA-ATGTTCAAATAA------TA-----CACGATATATTTCACAT----------AAACAAAT----GGCTAT------TGTACTGTGTTCT-ATGCCAAAAT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------TCCA---------GAGTGAATTTAATGCTGAACACAAACGTTT-TA-ACGTTCTAT-AT-------AA-TATACAT-TAAG--A--Aaccaactatttggttggaaa
gi|5 : tagggacaagtgctctgacaggtgccatagtgggtGGA-CAATGGCGCCAGGA-ATGGTAAAATAA------TG---A-TGTAAAGTATTTCCCGT----------AAACAAAT----ATCTAC------TGTACTGTGTTCT-ATGCTAAAAT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC------TCCAAAAATGAATAAGAGAATAAGATACAGAACCCAAAAGTTGTTACTTGTTCTAA-AT-------GA-TACAC-T-TAAT--A--AAA--AAActagagcaaacatttggttgggaat
gi|6 : ggggtagctcggcaagtgctcaagaagatatggA-CAATGGAGCCAGGA-ATATTCAAACAA------TC---A-TATAAGGTATTTCCCAG----------AAACACAT-----TTTAC------TGTTCTGTGTTC--ATGCCAAAAT------ATATCAATCTGGATACATTTTATATAATACCAACTGACAG-----------TTTTGGTC------ACTT---------AAGTGAAAAAGATACTGTACCCAAAAGTTG-TT-TTGTTCTAT-AT-------GA--A-ACAT-TAAC--A--GAAATAAACAGaa
gi|7 : gtgatgctcaggcaggtgcccaagtaggtctgaaGA-AAATGAGGCCGGGC-ATGTATAAATAA------TA---A-TACAAGGTACTTCCCAT----------AAACAAATTTTAAACTAT------TGTAC-------------CAAAA---------AAAGATCAACCTGGCTACATTTACAACAGTTATAAACACCAAGTAACAGTTTCAGGC------TCCA---------AAGTGAATAAGCTAATGAATTCAA-------------TTCTAT-AT-------GATTACACAT-TAAT--A--AAA--AAATAGtcaatatttggttgaaa
gi|8 : tgacaggtttccaagtagatatatatgaGGA-CATTGAGGCT-GGA-ATATCCAAACAA------TG---A-TATAAAGTGTTTCCCAT----------aaccaacacttggatgaaaa
gi|8 : gaagtagatatg------TCCA---------AAGTGATTAAGATACTGAACCCAATCGTTG-TA-ATGTTCTAT-ATGATTATAGA-TACACAT-TAAT--A--AAA--AAATActgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaaagtgattaagatactgaacccaatcgttgtaatgttctatatgattatagatacacattaataaaaaaataacaaagccaacattcagttgaaaat
gi|9 : gaagtagatatgggacattgaggctggaatatccaaacaatgatataaagtgtttcccatctgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATCAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGCATTTCCCAT----------AAACAAGT----TACTAT------TATACTGTGTTCT-ATGCCAAAAC------ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TCCA---------AAGTGAATTAGATACTGAACCCAAAAGTTC-TA-ATGTTCTAT-AT-------GA-CACACAG-TAAC--A--ACA--AAATAGacaaagccaacattcagttgaaaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATAACGCTGAAACAACACATAGTATTTCATTTAAGTTAAACACAATTTTCAAAAAGGGTTAGTGGGAGTGTTGAGTCAAATGGAGAGGGGGTGAGTGGATATATAGTGGCGGGGGAGGGTAATAAAGTTGAATTTCATTTAATACGCAACAAAACATATACAATAAAATAAAATAAAATTGTTTGGGCG
Unaligned ( gi|21 ): GCCAAGTAGATATGGAACAATGGACCTGGCAAATTCAAACATTGATTCCAAGTTTTTTCAATCTGTGATTTATT
Unaligned ( gi|22 ): TAGCCAAATAGATATGGGACAATTAAATTCAATCAATGATACAAAGTTAAATAATTTCCAATCTGGGATCTAT
Unaligned ( gi|23 ): GGGAGCGGTAATAAAGTTGAAAGAGGACAAAACAAAATTTTAAAAAATAATAAAATAAAAACAAAATGGGA
Unaligned ( gi|24 ): TGTCGGGCAGCGGGGGTACTGAAGTTGAAAAGGGGCAGCGTATTTCAATACCA
Unaligned ( gi|26 ): ATGATACAAAGTTTTTCCAATCTGTGATCTATTT
Alignments
lowQualScore : 1111111111 111111 99999999999999999999999999999999999999999999999 111111111 1111111 1111
lowQualScore : 3 2 999999 555555 2 0000000000 77777 222222 2 11111111111111111111111111111111111111111111111 1 5 1 33 2 66 1 1 77777777 000000000 2 33 88 3 0000000 2222 88 44 3 99
lowQualScore : . . ...... ...... . .......... ..... ...... . ............................................... . . . .. . .. . . ........ ......... . .. .. . ....... .... .. .. . ..
lowQualScore : 1 7 777777 666666 4 9999999999 11111 333333 9 66666666666666666666666666666666666666666666666 0 4 0 11 0 00 0 5 55555555 000000000 4 99 22 1 0000000 3333 55 22 3 22
consensus : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------ATATCGATCAANCTGGATACATTTANAAA----------NNATATAAATA-CCAAATAACAGTTTTGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
Reference ( family-1089 ) : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------ATATCGATCNGNNTGNNTNCNNTNNNANA----------NNANATGAANA-CCNAGCANCAGTTTCGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
gi|1 : GGA-TAATGGGGCCAAGA-ATGTTTTAACAA------TT---A-TATAAGGTGTTTCAAAT----------AAACAAAT----AACTAT------TGTATTCTGTTCT-TTGCCAAAATTAAAAAATATNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTTCCA---------CAGTAATTAAGATACTGAACCTAAATGTTA-TG-TTGTTCTAT-AT-------GA--A-ACATCAAC--AGGAT-A--AAACAG
gi|11 : tgataaagttgaaaaaaaaatggaaagagttatttcatttaatttaaaagaaattgaaattgggtagtagggataaatgtgtgaatgtgtctatagggggtgtctggggtgaggcaataaagtttagatgagcagatcataatatttagtacaaaacaaaatttaaaaaagaaaaagaaaaaaaaagagggaatgttttggtatgtgcccacctagatatgGA-CAATGGGGACAG-A-ATGTTCA------------------TACA-----TTTAACAT----------AAACAAAT----ACCTATAAT---TGTACTTTGTTCT-TTGCCGAAAT------ATATC-----------------------------------AAAATAAATA-CCCAATAACAGTTTTGGAC------TTCA---------AAATGAATAAagccaacatttggttataaat
gi|12 : aaaactgggagttggggatgtgtaacgctcgggagatacccaaataggcatgaGGA-CAATGGGGCC--GACATGTTCAGACAA------TG---A-TACAAAGTATTTCTCAT----------A--------------TTT------TGCGTTGTTATCA-ATACCAACAT---------TTTACAAAGCTACATACATTTAAAAATGTTTGATACAAATATAAAAA----AAAAACAATTTTGG-C------TCAA---------GAGTGAACAAAATACTAAAC
gi|13 : acgT------TTTATTATGTTTA-ATAC-AAAAT------ATATCAAT--------ATT---TNNNNNN----------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN------TCCA---------GAGTGAATAAGATACAGAACCCAAATGTTT-TA-CTATTCTAA-AT-------GA-TACACATGAACAGA--AA-A--AAATAG
gi|14 : atttGGA-CATTGGTGTCAGGA-ATATTCAAACAA------TA---GTTACAACATAATTCCCATATGTTTCCCAAAACAAAT----AACCAT------TGTCCAGTGTTCTAATGCCAAAGT------Aagccagtatttgaa
gi|14 : agtcaatatgTCTGGC------TTCA---------AACTGAATAAGATACTGAACCCAattttcataaatctggcttcaaactgaataagatactgaaccca
gi|15 : agtcaatatgggacattggtgtcaggaatattcaaacaatagttacaacataattcccatatgtttcccaaaacaaataaccattgtccagtgttctaatgccaaagtaattttcataaaATATAAATATCCAAATAT-AATTTTGGAC------TCCA---------AAATACATAAGATACTGAACCCAAAAGATG-TA-ATTTGCTAT-AT-------GA--A-ATATTAAC--A--GA-AACAAATAG
gi|16 : acagttcAGA----------TTACATGAATA-TCCAACATCAGTCTTGGTT------TCCA---------AAGTGAATACGATACTGAAGTCAAAAGTTG-TA-CTGTTTTCT-AT-------GA-TGTACATTAAT--A--AA-A--agcaaacatttggttgaa
gi|17 : aacattGGA-CAATGCTGCCAGGA-AT-------CAA------TA---G-TACAAGGTTTTTCCCAC----------CAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCtagatacaacatttgac
gi|18 : aagcaggggaatgttcgacagtttccaaagtaggtatgATCAATA-CCAAATAACAGCAATGGGC------TCCA---------AAGTGAATAA----C--AACCCAAAAGTTG-AA-ATGTTCTAC-AC-------GA-TACACATCAAC-----AA-A--AAATAGtta
gi|19 : ttcctGGA-CAATGAAGCCAGAC-ATGTAAAAAAAAA-----TA---G-TACAAGATATTTCCCAA----------AAAGAAAT----AACAAT------TGTACTTTGTTagccaacatttgg
gi|2 : gggatgcttgtgtaggtacaaagtaggtatgA-CAGTGGGACCGGGT-ATATTCAAACAA------TG---A-TACAATATATTTCCCAA----------AAACAAAT----AATTAT------TGTACTGTGTTTT-ATACCAAAAT-------TTNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN------NNNN---------NNNNNNNNNNNNNNNNNNNNNCAAACCTTT-TA-TTGTTCTAT-AT-------GA-TTCCCATGTAT--A--AATA--AAATAG
gi|20 : gaagaggaggagtatgggaggtatccaagtatatgtttaCCAGGA-ATGTTCAGTCAA------TATAAA-TACAAGGTTTTTCCTAT----------AAACAAAT----TACTATTGTACATGTACCGTATTCT-ATGCTAAAAT------Accaacatttggttgaaaat
gi|25 : gccgtattgtataTTCAAACAA------TG---A-TACAACGTTTTTCCAAT----------
gi|3 : acctggcaaaGGA-CAAAGGGGCAAGTA-ATGTTCATACAGGAATGTTA---A-TACAATATATTTCCCAT----------AAACAAAT----AACTGT------TGTACTGTGTTCT-GTGCCAAAAA------ATNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNAG------TCCA---------AAGTAAATAAGTCACTGAACCCAAAAGTTG-TA--TGTTCCATCAT-------GA--A-ACATTAACAGA--AA-A--AAATAGctgtggtctatt
gi|4 : tgctaagcccggtgtcctaataagtatgATGGGACCAGGA-ATGTTCAAATAA------TA-----CACGATATATTTCACAT----------AAACAAAT----GGCTAT------TGTACTGTGTTCT-ATGCCAAAAT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNT------TCCA---------GAGTGAATTTAATGCTGAACACAAACGTTT-TA-ACGTTCTAT-AT-------AA-TATACATTAAG--A--Aaccaactatttggttggaaa
gi|5 : tagggacaagtgctctgacaggtgccatagtgggtGGA-CAATGGCGCCAGGA-ATGGTAAAATAA------TG---A-TGTAAAGTATTTCCCGT----------AAACAAAT----ATCTAC------TGTACTGTGTTCT-ATGCTAAAAT------ATNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNTC------TCCAAAAATGAATAAGAGAATAAGATACAGAACCCAAAAGTTGTTACTTGTTCTAA-AT-------GA-TACAC-TTAAT--A--AA-A--AAActagagcaaacatttggttgggaat
gi|6 : ggggtagctcggcaagtgctcaagaagatatggA-CAATGGAGCCAGGA-ATATTCAAACAA------TC---A-TATAAGGTATTTCCCAG----------AAACACAT-----TTTAC------TGTTCTGTGTTC--ATGCCAAAAT------ATATCAATC----TGGATACATT----------------TTATAT-AATA-CCAACTGACAGTTTTGGTC------ACTT---------AAGTGAAAAAGATACTGTACCCAAAAGTTG-TT-TTGTTCTAT-AT-------GA--A-ACATTAAC--A--GA-AATAAACAGaa
gi|7 : gtgatgctcaggcaggtgcccaagtaggtctgaaGA-AAATGAGGCCGGGC-ATGTATAAATAA------TA---A-TACAAGGTACTTCCCAT----------AAACAAATTTTAAACTAT------TGTAC-------------CAAAAA------A-A--GATCAACCTGGCTACATTTACAAC----------AGTTATAAACA-CCAAGTAACAGTTTCAGGC------TCCA---------AAGTGAATAAGCTAATGAATTCAA-------------TTCTAT-AT-------GATTACACATTAAT--A--AA-A--AAATAGtcaatatttggttgaaa
gi|8 : tgacaggtttccaagtagatatatatgaGGA-CATTGAGGCT-GGA-ATATCCAAACAA------TG---A-TATAAAGTGTTTCCCAT----------aaccaacacttggatgaaaa
gi|8 : gaagtagatatg------TCCA---------AAGTGATTAAGATACTGAACCCAATCGTTG-TA-ATGTTCTAT-ATGATTATAGA-TACACATTAAT--A--AA-A--AAATActgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaaagtgattaagatactgaacccaatcgttgtaatgttctatatgattatagatacacattaataaaaaaataacaaagccaacattcagttgaaaat
gi|9 : gaagtagatatgggacattgaggctggaatatccaaacaatgatataaagtgtttcccatctgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATCAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGCATTTCCCAT----------AAACAAGT----TACTAT------TATACTGTGTTCT-ATGCCAAAAC------ATNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN------TCCA---------AAGTGAATTAGATACTGAACCCAAAAGTTC-TA-ATGTTCTAT-AT-------GA-CACACAGTAAC--A--AC-A--AAATAGacaaagccaacattcagttgaaaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATAACGCTGAAACAACACATAGTATTTCATTTAAGTTAAACACAATTTTCAAAAAGGGTTAGTGGGAGTGTTGAGTCAAATGGAGAGGGGGTGAGTGGATATATAGTGGCGGGGGAGGGTAATAAAGTTGAATTTCATTTAATACGCAACAAAACATATACAATAAAATAAAATAAAATTGTTTGGGCG
Unaligned ( gi|21 ): GCCAAGTAGATATGGAACAATGGACCTGGCAAATTCAAACATTGATTCCAAGTTTTTTCAATCTGTGATTTATT
Unaligned ( gi|22 ): TAGCCAAATAGATATGGGACAATTAAATTCAATCAATGATACAAAGTTAAATAATTTCCAATCTGGGATCTAT
Unaligned ( gi|23 ): GGGAGCGGTAATAAAGTTGAAAGAGGACAAAACAAAATTTTAAAAAATAATAAAATAAAAACAAAATGGGA
Unaligned ( gi|24 ): TGTCGGGCAGCGGGGGTACTGAAGTTGAAAAGGGGCAGCGTATTTCAATACCA
Unaligned ( gi|26 ): ATGATACAAAGTTTTTCCAATCTGTGATCTATTT
Alignments
lowQualScore : 1111111111 111111 55555555555555555555555555555555555555555555 111111111 1111111 1111
lowQualScore : 3 2 999999 555555 2 0000000000 666666 222222 2 88888888888888888888888888888888888888888888 55555 1 77777777 000000000 2 33 88 3 0000000 2222 88 44 3 99
lowQualScore : . . ...... ...... . .......... ...... ...... . ............................................ ..... . ........ ......... . .. .. . ....... .... .. .. . ..
lowQualScore : 1 7 777777 666666 4 9999999999 333333 333333 9 11111111111111111111111111111111111111111111 66666 4 55555555 000000000 4 99 22 1 0000000 3333 55 22 3 22
consensus : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------A--TATCGATAAANCTGGATACATTTANAAA----NNATATAAATA-C---CAAATAACAGTTTTGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
Reference ( family-1089 ) : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------A--TATCGATCAANCTGGATACATTTANAAA----NNATATAAATA-C---CAAATAACAGTTTTGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
gi|1 : GGA-TAATGGGGCCAAGA-ATGTTTTAACAA------TT---A-TATAAGGTGTTTCAAAT----------AAACAAAT----AACTAT------TGTATTCTGTTCT-TTGCCAAAATTAAAAAA--TATNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNNNNNNNTTCCA---------CAGTAATTAAGATACTGAACCTAAATGTTA-TG-TTGTTCTAT-AT-------GA--A-ACATCAAC--AGGAT-A--AAACAG
gi|11 : tgataaagttgaaaaaaaaatggaaagagttatttcatttaatttaaaagaaattgaaattgggtagtagggataaatgtgtgaatgtgtctatagggggtgtctggggtgaggcaataaagtttagatgagcagatcataatatttagtacaaaacaaaatttaaaaaagaaaaagaaaaaaaaagagggaatgttttggtatgtgcccacctagatatgGA-CAATGGGGACAG-A-ATGTTCA------------------TACA-----TTTAACAT----------AAACAAAT----ACCTATAAT---TGTACTTTGTTCT-TTGCCGAAAT------A--TATC---------------------AAA--------ATAAATA-C---CCAATAACAGTTTTGGAC------TTCA---------AAATGAATAAagccaacatttggttataaat
gi|12 : aaaactgggagttggggatgtgtaacgctcgggagatacccaaataggcatgaGGA-CAATGGGGCC--GACATGTTCAGACAA------TG---A-TACAAAGTATTTCTCAT----------A--------------TTT------TGCGTTGTTATCA-ATACCAACAT-----------TTTACAAAGCTACATACATTTAAAAATGTTTGATACAAATA-TAAAAAAAAAACAATTTTGG-C------TCAA---------GAGTGAACAAAATACTAAAC
gi|13 : acgT------TTTATTATGTTTA-ATAC-AAAAT------A--TATCAAT--------AT---TTNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNN------TCCA---------GAGTGAATAAGATACAGAACCCAAATGTTT-TA-CTATTCTAA-AT-------GA-TACACATGAACAGA--AA-A--AAATAG
gi|14 : atttGGA-CATTGGTGTCAGGA-ATATTCAAACAA------TA---GTTACAACATAATTCCCATATGTTTCCCAAAACAAAT----AACCAT------TGTCCAGTGTTCTAATGCCAAAGT------AATTTTC-ATAAATCTGGagccagtatttgaa
gi|14 : agtcaatatgGGC------TTCA---------AACTGAATAAGATACTGAACCCActtcaaactgaataagatactgaaccca
gi|15 : agtcaatatgggacattggtgtcaggaatattcaaacaatagttacaacataattcccatatgtttcccaaaacaaataaccattgtccagtgttctaatgccaaagtaattttcataaatctATATAAATATC---CAAATA-TAATTTTGGAC------TCCA---------AAATACATAAGATACTGAACCCAAAAGATG-TA-ATTTGCTAT-AT-------GA--A-ATATTAAC--A--GA-AACAAATAG
gi|16 : acagttcACATT---AGA----TTACATGAATA-T---CCAACATCAGTCTTGGTT------TCCA---------AAGTGAATACGATACTGAAGTCAAAAGTTG-TA-CTGTTTTCT-AT-------GA-TGTACATTAAT--A--AA-A--agcaaacatttggttgaa
gi|17 : aGGA-CAATGCTGCCAGGA-AT-------CAA------TA---G-TACAAGGTTTTTCCCAC----------CAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCtagatacaacatttgac
gi|18 : aagcaggggaatgttcgacagtttccaaagtaggtatgTATCAATA-C---CAAATAACAGCAATGGGC------TCCA---------AAGTGAATAA----C--AACCCAAAAGTTG-AA-ATGTTCTAC-AC-------GA-TACACATCAAC-----AA-A--AAATAGtta
gi|19 : ttccGGA-CAATGAAGCCAGAC-ATGTAAAAAAAAA-----TA---G-TACAAGATATTTCCCAA----------AAAGAAAT----AACAAT------TGTACTTTGTTagccaacatttgg
gi|2 : gggatgcttgtgtaggtacaaagtaggtatgA-CAGTGGGACCGGGT-ATATTCAAACAA------TG---A-TACAATATATTTCCCAA----------AAACAAAT----AATTAT------TGTACTGTGTTTT-ATACCAAAAT---------TTNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNN------NNNN---------NNNNNNNNNNNNNNNNNNNNNCAAACCTTT-TA-TTGTTCTAT-AT-------GA-TTCCCATGTAT--A--AATA--AAATAG
gi|20 : gaagaggaggagtatgggaggtatccaagtatatgtttaCCAGGA-ATGTTCAGTCAA------TATAAA-TACAAGGTTTTTCCTAT----------AAACAAAT----TACTATTGTACATGTACCGTATTCT-ATGCTAAAAT------A--ccaacatttggttgaaaat
gi|25 : gccgtattgtataTTCAAACAA------TG---A-TACAACGTTTTTCCAAT----------
gi|3 : acctggcaaaGGA-CAAAGGGGCAAGTA-ATGTTCATACAGGAATGTTA---A-TACAATATATTTCCCAT----------AAACAAAT----AACTGT------TGTACTGTGTTCT-GTGCCAAAAA------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNAG------TCCA---------AAGTAAATAAGTCACTGAACCCAAAAGTTG-TA--TGTTCCATCAT-------GA--A-ACATTAACAGA--AA-A--AAATAGctgtggtctatt
gi|4 : tgctaagcccggtgtcctaataagtatgATGGGACCAGGA-ATGTTCAAATAA------TA-----CACGATATATTTCACAT----------AAACAAAT----GGCTAT------TGTACTGTGTTCT-ATGCCAAAAT------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNT------TCCA---------GAGTGAATTTAATGCTGAACACAAACGTTT-TA-ACGTTCTAT-AT-------AA-TATACATTAAG--A--Aaccaactatttggttggaaa
gi|5 : tagggacaagtgctctgacaggtgccatagtgggtGGA-CAATGGCGCCAGGA-ATGGTAAAATAA------TG---A-TGTAAAGTATTTCCCGT----------AAACAAAT----ATCTAC------TGTACTGTGTTCT-ATGCTAAAAT------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNTC------TCCAAAAATGAATAAGAGAATAAGATACAGAACCCAAAAGTTGTTACTTGTTCTAA-AT-------GA-TACAC-TTAAT--A--AA-A--AAActagagcaaacatttggttgggaat
gi|6 : ggggtagctcggcaagtgctcaagaagatatggA-CAATGGAGCCAGGA-ATATTCAAACAA------TC---A-TATAAGGTATTTCCCAG----------AAACACAT----T-TTAC------TGTTCTGTGTTC--ATGCCAAAAT------A--TATC----AATCTGGATACATTT----------TATATAA-TA-C---CAACTGACAGTTTTGGTC------ACTT---------AAGTGAAAAAGATACTGTACCCAAAAGTTG-TT-TTGTTCTAT-AT-------GA--A-ACATTAAC--A--GA-AATAAACAGaa
gi|7 : gtgatgctcaggcaggtgcccaagtaggtctgaaGA-AAATGAGGCCGGGC-ATGTATAAATAA------TA---A-TACAAGGTACTTCCCAT----------AAACAAATTTTAAACTAT------TGTAC-------------CAAAAA------A---A--GATCAACCTGGCTACATTTACAAC----AGTTATAAACA-C---CAAGTAACAGTTTCAGGC------TCCA---------AAGTGAATAAGCTAATGAATTCAA-------------TTCTAT-AT-------GATTACACATTAAT--A--AA-A--AAATAGtcaatatttggttgaaa
gi|8 : tgacaggtttccaagtagatatatatgaGGA-CATTGAGGCT-GGA-ATATCCAAACAA------TG---A-TATAAAGTGTTTCCCAT----------aaccaacacttggatgaaaa
gi|8 : gaagtagatatg------TCCA---------AAGTGATTAAGATACTGAACCCAATCGTTG-TA-ATGTTCTAT-ATGATTATAGA-TACACATTAAT--A--AA-A--AAATActgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaaagtgattaagatactgaacccaatcgttgtaatgttctatatgattatagatacacattaataaaaaaataacaaagccaacattcagttgaaaat
gi|9 : gaagtagatatgggacattgaggctggaatatccaaacaatgatataaagtgtttcccatctgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATCAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGCATTTCCCAT----------AAACAAGT----TACTAT------TATACTGTGTTCT-ATGCCAAAAC------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNN------TCCA---------AAGTGAATTAGATACTGAACCCAAAAGTTC-TA-ATGTTCTAT-AT-------GA-CACACAGTAAC--A--AC-A--AAATAGacaaagccaacattcagttgaaaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATAACGCTGAAACAACACATAGTATTTCATTTAAGTTAAACACAATTTTCAAAAAGGGTTAGTGGGAGTGTTGAGTCAAATGGAGAGGGGGTGAGTGGATATATAGTGGCGGGGGAGGGTAATAAAGTTGAATTTCATTTAATACGCAACAAAACATATACAATAAAATAAAATAAAATTGTTTGGGCG
Unaligned ( gi|21 ): GCCAAGTAGATATGGAACAATGGACCTGGCAAATTCAAACATTGATTCCAAGTTTTTTCAATCTGTGATTTATT
Unaligned ( gi|22 ): TAGCCAAATAGATATGGGACAATTAAATTCAATCAATGATACAAAGTTAAATAATTTCCAATCTGGGATCTAT
Unaligned ( gi|23 ): GGGAGCGGTAATAAAGTTGAAAGAGGACAAAACAAAATTTTAAAAAATAATAAAATAAAAACAAAATGGGA
Unaligned ( gi|24 ): TGTCGGGCAGCGGGGGTACTGAAGTTGAAAAGGGGCAGCGTATTTCAATACCA
Unaligned ( gi|26 ): ATGATACAAAGTTTTTCCAATCTGTGATCTATTT
Alignments
lowQualScore : 1111111111 111111 55555555555555555555555555555555555555555555 111111111 1111111 1111
lowQualScore : 3 2 999999 555555 2 0000000000 666666 222222 2 66666666666666666666666666666666666666666666 55555 1 77777777 000000000 2 33 88 3 0000000 2222 88 44 3 99
lowQualScore : . . ...... ...... . .......... ...... ...... . ............................................ ..... . ........ ......... . .. .. . ....... .... .. .. . ..
lowQualScore : 1 7 777777 666666 4 9999999999 333333 333333 9 44444444444444444444444444444444444444444444 66666 4 55555555 000000000 4 99 22 1 0000000 3333 55 22 3 22
consensus : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------A--TATCGATAAANCTGGATACATTTANAAA----NNATATAAATA-C---CAAATAACAGTTTTGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
Reference ( family-1089 ) : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------A--TATCGATAAANCTGGATACATTTANAAA----NNATATAAATA-C---CAAATAACAGTTTTGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
gi|1 : GGA-TAATGGGGCCAAGA-ATGTTTTAACAA------TT---A-TATAAGGTGTTTCAAAT----------AAACAAAT----AACTAT------TGTATTCTGTTCT-TTGCCAAAATTAAAAAA--TATNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNNNNNNNTTCCA---------CAGTAATTAAGATACTGAACCTAAATGTTA-TG-TTGTTCTAT-AT-------GA--A-ACATCAAC--AGGAT-A--AAACAG
gi|11 : tgataaagttgaaaaaaaaatggaaagagttatttcatttaatttaaaagaaattgaaattgggtagtagggataaatgtgtgaatgtgtctatagggggtgtctggggtgaggcaataaagtttagatgagcagatcataatatttagtacaaaacaaaatttaaaaaagaaaaagaaaaaaaaagagggaatgttttggtatgtgcccacctagatatgGA-CAATGGGGACAG-A-ATGTTCA------------------TACA-----TTTAACAT----------AAACAAAT----ACCTATAAT---TGTACTTTGTTCT-TTGCCGAAAT------A--TATC---AAA--------------------------ATAAATA-C---CCAATAACAGTTTTGGAC------TTCA---------AAATGAATAAagccaacatttggttataaat
gi|12 : aaaactgggagttggggatgtgtaacgctcgggagatacccaaataggcatgaGGA-CAATGGGGCC--GACATGTTCAGACAA------TG---A-TACAAAGTATTTCTCAT----------A--------------TTT------TGCGTTGTTATCA-ATACCAACAT-----------TTTACAAAGCTACATACATTTAAAAATGTTTGATACAAATA-TAAAAAAAAAACAATTTTGG-C------TCAA---------GAGTGAACAAAATACTAAAC
gi|13 : acgT------TTTATTATGTTTA-ATAC-AAAAT------A--TATCAATA--------T---TTNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNN------TCCA---------GAGTGAATAAGATACAGAACCCAAATGTTT-TA-CTATTCTAA-AT-------GA-TACACATGAACAGA--AA-A--AAATAG
gi|14 : atttGGA-CATTGGTGTCAGGA-ATATTCAAACAA------TA---GTTACAACATAATTCCCATATGTTTCCCAAAACAAAT----AACCAT------TGTCCAGTGTTCTAATGCCAAAGT------AATTTTC-ATAAATCTGGagccagtatttgaa
gi|14 : agtcaatatgGGC------TTCA---------AACTGAATAAGATACTGAACCCActtcaaactgaataagatactgaaccca
gi|15 : agtcaatatgggacattggtgtcaggaatattcaaacaatagttacaacataattcccatatgtttcccaaaacaaataaccattgtccagtgttctaatgccaaagtaattttcataaatctATATAAATATC---CAAATA-TAATTTTGGAC------TCCA---------AAATACATAAGATACTGAACCCAAAAGATG-TA-ATTTGCTAT-AT-------GA--A-ATATTAAC--A--GA-AACAAATAG
gi|16 : acagttcACATT---AGA----TTACATGAATA-T---CCAACATCAGTCTTGGTT------TCCA---------AAGTGAATACGATACTGAAGTCAAAAGTTG-TA-CTGTTTTCT-AT-------GA-TGTACATTAAT--A--AA-A--agcaaacatttggttgaa
gi|17 : aGGA-CAATGCTGCCAGGA-AT-------CAA------TA---G-TACAAGGTTTTTCCCAC----------CAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCtagatacaacatttgac
gi|18 : aagcaggggaatgttcgacagtttccaaagtaggtatgTATCAATA-C---CAAATAACAGCAATGGGC------TCCA---------AAGTGAATAA----C--AACCCAAAAGTTG-AA-ATGTTCTAC-AC-------GA-TACACATCAAC-----AA-A--AAATAGtta
gi|19 : ttccGGA-CAATGAAGCCAGAC-ATGTAAAAAAAAA-----TA---G-TACAAGATATTTCCCAA----------AAAGAAAT----AACAAT------TGTACTTTGTTagccaacatttgg
gi|2 : gggatgcttgtgtaggtacaaagtaggtatgA-CAGTGGGACCGGGT-ATATTCAAACAA------TG---A-TACAATATATTTCCCAA----------AAACAAAT----AATTAT------TGTACTGTGTTTT-ATACCAAAAT---------TTNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNN------NNNN---------NNNNNNNNNNNNNNNNNNNNNCAAACCTTT-TA-TTGTTCTAT-AT-------GA-TTCCCATGTAT--A--AATA--AAATAG
gi|20 : gaagaggaggagtatgggaggtatccaagtatatgtttaCCAGGA-ATGTTCAGTCAA------TATAAA-TACAAGGTTTTTCCTAT----------AAACAAAT----TACTATTGTACATGTACCGTATTCT-ATGCTAAAAT------A--ccaacatttggttgaaaat
gi|25 : gccgtattgtataTTCAAACAA------TG---A-TACAACGTTTTTCCAAT----------
gi|3 : acctggcaaaGGA-CAAAGGGGCAAGTA-ATGTTCATACAGGAATGTTA---A-TACAATATATTTCCCAT----------AAACAAAT----AACTGT------TGTACTGTGTTCT-GTGCCAAAAA------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNAG------TCCA---------AAGTAAATAAGTCACTGAACCCAAAAGTTG-TA--TGTTCCATCAT-------GA--A-ACATTAACAGA--AA-A--AAATAGctgtggtctatt
gi|4 : tgctaagcccggtgtcctaataagtatgATGGGACCAGGA-ATGTTCAAATAA------TA-----CACGATATATTTCACAT----------AAACAAAT----GGCTAT------TGTACTGTGTTCT-ATGCCAAAAT------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNT------TCCA---------GAGTGAATTTAATGCTGAACACAAACGTTT-TA-ACGTTCTAT-AT-------AA-TATACATTAAG--A--Aaccaactatttggttggaaa
gi|5 : tagggacaagtgctctgacaggtgccatagtgggtGGA-CAATGGCGCCAGGA-ATGGTAAAATAA------TG---A-TGTAAAGTATTTCCCGT----------AAACAAAT----ATCTAC------TGTACTGTGTTCT-ATGCTAAAAT------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNTC------TCCAAAAATGAATAAGAGAATAAGATACAGAACCCAAAAGTTGTTACTTGTTCTAA-AT-------GA-TACAC-TTAAT--A--AA-A--AAActagagcaaacatttggttgggaat
gi|6 : ggggtagctcggcaagtgctcaagaagatatggA-CAATGGAGCCAGGA-ATATTCAAACAA------TC---A-TATAAGGTATTTCCCAG----------AAACACAT----T-TTAC------TGTTCTGTGTTC--ATGCCAAAAT------A--TATC----AATCTGGATACATTT----------TATATAA-TA-C---CAACTGACAGTTTTGGTC------ACTT---------AAGTGAAAAAGATACTGTACCCAAAAGTTG-TT-TTGTTCTAT-AT-------GA--A-ACATTAAC--A--GA-AATAAACAGaa
gi|7 : gtgatgctcaggcaggtgcccaagtaggtctgaaGA-AAATGAGGCCGGGC-ATGTATAAATAA------TA---A-TACAAGGTACTTCCCAT----------AAACAAATTTTAAACTAT------TGTAC-------------CAAAAA------A---A--GATCAACCTGGCTACATTTACAAC----AGTTATAAACA-C---CAAGTAACAGTTTCAGGC------TCCA---------AAGTGAATAAGCTAATGAATTCAA-------------TTCTAT-AT-------GATTACACATTAAT--A--AA-A--AAATAGtcaatatttggttgaaa
gi|8 : tgacaggtttccaagtagatatatatgaGGA-CATTGAGGCT-GGA-ATATCCAAACAA------TG---A-TATAAAGTGTTTCCCAT----------aaccaacacttggatgaaaa
gi|8 : gaagtagatatg------TCCA---------AAGTGATTAAGATACTGAACCCAATCGTTG-TA-ATGTTCTAT-ATGATTATAGA-TACACATTAAT--A--AA-A--AAATActgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaaagtgattaagatactgaacccaatcgttgtaatgttctatatgattatagatacacattaataaaaaaataacaaagccaacattcagttgaaaat
gi|9 : gaagtagatatgggacattgaggctggaatatccaaacaatgatataaagtgtttcccatctgtgatctacacgtatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATCAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGCATTTCCCAT----------AAACAAGT----TACTAT------TATACTGTGTTCT-ATGCCAAAAC------A--TNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNN-N---NNNNNNNNNNNNNNNNNN------TCCA---------AAGTGAATTAGATACTGAACCCAAAAGTTC-TA-ATGTTCTAT-AT-------GA-CACACAGTAAC--A--AC-A--AAATAGacaaagccaacattcagttgaaaat
blockSeqs : T C GAATGT ATAAA A ATGTTTCCCA TTTAAA TGTACA A TTTACAAAGCTACATACATTTAAAAATGTTTGA TAAA A AC AAAATGAAT T GT CT C GATTATA TTAC AG . T AC
blockSeqs : . . A AGT C . AC AAT . ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TC A NN . A T C . . TAC AG . . AT
blockSeqs : . . . GA G . AA . . ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C N GC . A G A . . TGT . . . .
blockSeqs : . . . AG G . AA . . ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N T AC . A G C . . TAC . . . .
blockSeqs : . . . AG T . AA . . ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T A TT . C G A . . TTC . . . .
blockSeqs : . . . GA G . AA . . TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C N GC . A T T . . TAT . . . .
blockSeqs : . . . GA C . TA . . AAGATCAACCTGGCTACATTTACAACAGT N N NN . C G A . . TAC . . . .
blockSeqs : . . . AA T . AA . . ATATCAATCTGGATACATTTTA N N AG . A T T . . TAC . . . .
blockSeqs : . . . GA T . GG . . ATATCAATATTTNNNNNNNNN N N NT . A G A . . CAC . . . .
blockSeqs : . . . CA A . AT . . ATATCAAA N A TC . C G A . . A . . . .
blockSeqs : . . . AA G . TA . . C A TC . A C . . . A . . . .
blockSeqs : . . . GA G . T . . C N GC . . . . . . A . .
blockSeqs : . . AA A . . . . N . NN .
blockSeqs : . . A G . . C .
blockSeqs : . . . . .
blockSeqCons : ATATCAANCTGNATACATTTCA********************** NC****** TAC* **
originalCons : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAAT------A--TATCGATAAANCTGGATACATTTANAAA----NNATATAAATA-C---CAAATAACAGTTTTGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
finalCons : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTACTGTGTTCT-ATGCCAAAATATATCAANCTGNATACATTTCA----------------------TATAAATA-C---CAAATAACAGTTTTGGNC------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GATAC-ACATTAAC--A--AA-A--AAATAG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATAACGCTGAAACAACACATAGTATTTCATTTAAGTTAAACACAATTTTCAAAAAGGGTTAGTGGGAGTGTTGAGTCAAATGGAGAGGGGGTGAGTGGATATATAGTGGCGGGGGAGGGTAATAAAGTTGAATTTCATTTAATACGCAACAAAACATATACAATAAAATAAAATAAAATTGTTTGGGCG
Unaligned ( gi|21 ): GCCAAGTAGATATGGAACAATGGACCTGGCAAATTCAAACATTGATTCCAAGTTTTTTCAATCTGTGATTTATT
Unaligned ( gi|22 ): TAGCCAAATAGATATGGGACAATTAAATTCAATCAATGATACAAAGTTAAATAATTTCCAATCTGGGATCTAT
Unaligned ( gi|23 ): GGGAGCGGTAATAAAGTTGAAAGAGGACAAAACAAAATTTTAAAAAATAATAAAATAAAAACAAAATGGGA
Unaligned ( gi|24 ): TGTCGGGCAGCGGGGGTACTGAAGTTGAAAAGGGGCAGCGTATTTCAATACCA
Unaligned ( gi|26 ): ATGATACAAAGTTTTTCCAATCTGTGATCTATTT
Alignments
lowQualScore : 1111111111 111111 11111111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111 1111111 1111
lowQualScore : 3 2 999999 555555 2 0000000000 777777 555555 2 2 00000000 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000000000 2 33 88 3 0000000 2222 88 44 3 99
lowQualScore : . . ...... ...... . .......... ...... ...... . . ........ ......................................................................................................... ......... . .. .. . ....... .... .. .. . ..
lowQualScore : 1 7 777777 666666 4 9999999999 999999 000000 5 7 44444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000000 4 99 22 1 0000000 3333 55 22 3 22
consensus : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTAC-TGTGTTCT-ATGCCA--------AAAT---------AT----------ATCAANCTGNATACA----------TT---T----CA--TATAAATA-C---CAAATAACAGTTTTGGNC--------------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
Reference ( family-1089 ) : GGA-CAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGTATTTCCCAT----------AAACAAAT----AACTAT------TGTAC-TGTGTTCT-ATGCCA--------AAAT---------AT----------ATCAANCTGNATACA----------TT---T----CA--TATAAATA-C---CAAATAACAGTTTTGGNC--------------TCCA---------AAGTGAATAAGATACTGAACCCAAAAGTTG-TA-NTGTTCTAT-AT-------GA-TACACATTAAC--A--AA-A--AAATAG
gi|1 : GGA-TAATGGGGCCAAGA-ATGTTTTAACAA------TT---A-TATAAGGTGTTTCAAAT----------AAACAAAT----AACTAT------TGTAT-TCTGTTCT-TTGCCAAAATTAAAAAAT---------AT----------NNNNNNNNNNNNNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCA---------CAGTAATTAAGATACTGAACCTAAATGTTA-TG-TTGTTCTAT-AT-------GA--A-ACATCAAC--AGGAT-A--AAACAG
gi|11 : tgataaagttgaaaaaaaaatggaaagagttatttcatttaatttaaaagaaattgaaattgggtagtagggataaatgtgtgaatgtgtctatagggggtgtctggggtgaggcaataaagtttagatgagcagatcataatatttagtacaaaacaaaatttaaaaaagaaaaagaaaaaaaaagagggaatgttttggtatgtgcccacctagatatgGA-CAATGGGGACAG-A-ATGTTCA------------------TACA-----TTTAACAT----------AAACAAAT----ACCTATAAT---TGTAC-TTTGTTCT-TTGCCG--------AAAT---------AT----------ATCAAA----------------------------------ATAAATA-C---CCAATAACAGTTTTGGAC--------------TTCA---------AAATGAATAAagccaacatttggttataaat
gi|12 : aaaactgggagttggggatgtgtaacgctcgggagatacccaaataggcatgaGGA-CAATGGGGCC--GACATGTTCAGACAA------TG---A-TACAAAGTATTTCTCAT----------A--------------TTT------TGCGT-TGTTATCA-ATACCA--------ACAT---------TTT---------ACAAAGCTACATACATTTAAAAATGTT---T----GA--TACAAATA-TAAAAAAAAAACAATTTTGG-C--------------TCAA---------GAGTGAACAAAATACTAAAC
gi|13 : acgT------TTTAT-TATGTTTA-ATAC-A--------AAAT---------AT----------ATCAATATTT-NNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNNN--------------TCCA---------GAGTGAATAAGATACAGAACCCAAATGTTT-TA-CTATTCTAA-AT-------GA-TACACATGAACAGA--AA-A--AAATAG
gi|14 : atttGGA-CATTGGTGTCAGGA-ATATTCAAACAA------TA---GTTACAACATAATTCCCATATGTTTCCCAAAACAAAT----AACCAT------TGTCC-AGTGTTCTAATGCCA--------AAGT---------A-----------AT-----------------------TT---T----CA--TA-AA-------------------TCTGG-C--------------TTCA---------AACTGAATAAGATACTGAACCCAagccagtatttgaa
gi|15 : agtcaatatgACA----------GT---T----CA--TATAAATATC---CAAAT-ATAATTTTGGAC--------------TCCA---------AAATACATAAGATACTGAACCCAAAAGATG-TA-ATTTGCTAT-AT-------GA--A-ATATTAAC--A--GA-AACAAATAG
gi|16 : ACA----------TTAGAT----TA--CATGAATA-T---CCAACATCAGTCTTGGTT--------------TCCA---------AAGTGAATACGATACTGAAGTCAAAAGTTG-TA-CTGTTTTCT-AT-------GA-TGTACATTAAT--A--AA-A--agcaaacatttggttgaa
gi|17 : aGGA-CAATGCTGCCAGGA-AT-------CAA------TA---G-TACAAGGTTTTTCCCAC----------CAACAAAT----AACTAT------TGTAC-TGTGTTCT-ATGCtagatacaacatttgac
gi|18 : aagcaggggaatgttcgacagtttccaaagtaggtatgT---T----CC--TATCAATA-C---CAAATAACAGCAATGGGC--------------TCCA---------AAGTGAATAA----C--AACCCAAAAGTTG-AA-ATGTTCTAC-AC-------GA-TACACATCAAC-----AA-A--AAATAGtta
gi|19 : GGA-CAATGAAGCCAGAC-ATGTAAAAAAAAA-----TA---G-TACAAGATATTTCCCAA----------AAAGAAAT----AACAAT------TGTAC-TTTGTTagccaacatttgg
gi|2 : gggatgcttgtgtaggtacaaagtaggtatgA-CAGTGGGACCGGGT-ATATTCAAACAA------TG---A-TACAATATATTTCCCAA----------AAACAAAT----AATTAT------TGTAC-TGTGTTTT-ATACCA--------AAATTTNNNNNNNNN----------NNNNNNNNNNNNNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNNN--------------NNNN---------NNNNNNNNNNNNNNNNNNNNNCAAACCTTT-TA-TTGTTCTAT-AT-------GA-TTCCCATGTAT--A--AATA--AAATAG
gi|20 : gaagaggaggagtatgggaggtatccaagtatatgtttaCCAGGA-ATGTTCAGTCAA------TATAAA-TACAAGGTTTTTCCTAT----------AAACAAAT----TACTATTGTACATGTAC-CGTATTCT-ATGCTA--------AAAT---------Accaacatttggttgaaaat
gi|25 : gccgtattgtataTTCAAACAA------TG---A-TACAACGTTTTTCCAAT----------
gi|3 : acctggcaaaGGA-CAAAGGGGCAAGTA-ATGTTCATACAGGAATGTTA---A-TACAATATATTTCCCAT----------AAACAAAT----AACTGT------TGTAC-TGTGTTCT-GTGCCA--------AAAA---------AT----------NNNNNNNNNNNNNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNAG----TCCA---------AAGTAAATAAGTCACTGAACCCAAAAGTTG-TA--TGTTCCATCAT-------GA--A-ACATTAACAGA--AA-A--AAATAGctgtggtctatt
gi|4 : tgctaagcccggtgtcctaataagtatgATGGGACCAGGA-ATGTTCAAATAA------TA-----CACGATATATTTCACAT----------AAACAAAT----GGCTAT------TGTAC-TGTGTTCT-ATGCCA--------AAAT---------AT----------NNNNNNNNNNNNNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNNNNNNNNNNNNT----TCCA---------GAGTGAATTTAATGCTGAACACAAACGTTT-TA-ACGTTCTAT-AT-------AA-TATACATTAAG--A--Aaccaactatttggttggaaa
gi|5 : tagggacaagtgctctgacaggtgccatagtgggtGGA-CAATGGCGCCAGGA-ATGGTAAAATAA------TG---A-TGTAAAGTATTTCCCGT----------AAACAAAT----ATCTAC------TGTAC-TGTGTTCT-ATGCTA--------AAAT---------ATNNNNNNNNNNNNNNNNNNNNNNNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNTC--------------TCCAAAAATGAATAAGAGAATAAGATACAGAACCCAAAAGTTGTTACTTGTTCTAA-AT-------GA-TACAC-TTAAT--A--AA-A--AAActagagcaaacatttggttgggaat
gi|6 : ggggtagctcggcaagtgctcaagaagatatggA-CAATGGAGCCAGGA-ATATTCAAACAA------TC---A-TATAAGGTATTTCCCAG----------AAACACAT----T-TTAC------TGTTC-TGTGTTC--ATGCCA--------AAAT---------AT----------ATCAATCTGGATACA----------TT---T----TA--TATAA-TA-C---CAACTGACAGTTTTGGTC--------------ACTT---------AAGTGAAAAAGATACTGTACCCAAAAGTTG-TT-TTGTTCTAT-AT-------GA--A-ACATTAAC--A--GA-AATAAACAGaa
gi|7 : gtgatgctcaggcaggtgcccaagtaggtctgaaGA-AAATGAGGCCGGGC-ATGTATAAATAA------TA---A-TACAAGGTACTTCCCAT----------AAACAAATTTTAAACTAT------TGTAC-------------CAA--------AAAA---------AG----------ATCAACCTGGCTACA----------TT---TACAACAGTTATAAACA-C---CAAGTAACAGTTTCAGGC--------------TCCA---------AAGTGAATAAGCTAATGAATTCAA-------------TTCTAT-AT-------GATTACACATTAAT--A--AA-A--AAATAGtcaatatttggttgaaa
gi|8 : tgacaggtttccaagtagatatatatgaGGA-CATTGAGGCT-GGA-ATATCCAAACAA------TG---A-TATAAAGTGTTTCCCAT------------------------CTGTGA----TCTACACGTATTTN-NNNNNN--------NNNN---------NN----------NNNNNNNNNNNNNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNNN--------------TCCA---------AAGTGATTAAGATACTGAACCCAATCGTTG-TA-ATGTTCTAT-ATGATTATAGA-TACACATTAAT--A--AA-A--AAATAaaccaacacttggatgaaaa
gi|9 : gaagtagatatgGGATCAATGGGGCCAGGA-ATGTTCAAACAA------TA---A-TACAAGGCATTTCCCAT----------AAACAAGT----TACTAT------TATAC-TGTGTTCT-ATGCCA--------AAAC---------ATNNNNNNNNNNNNNNNNNNNNNNNNN----------NN---N----NN--NNNNNNNN-N---NNNNNNNNNNNNNNNNNN--------------TCCA---------AAGTGAATTAGATACTGAACCCAAAAGTTC-TA-ATGTTCTAT-AT-------GA-CACACAGTAAC--A--AC-A--AAATAGacaaagccaacattcagttgaaaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AATAACGCTGAAACAACACATAGTATTTCATTTAAGTTAAACACAATTTTCAAAAAGGGTTAGTGGGAGTGTTGAGTCAAATGGAGAGGGGGTGAGTGGATATATAGTGGCGGGGGAGGGTAATAAAGTTGAATTTCATTTAATACGCAACAAAACATATACAATAAAATAAAATAAAATTGTTTGGGCG
Unaligned ( gi|21 ): GCCAAGTAGATATGGAACAATGGACCTGGCAAATTCAAACATTGATTCCAAGTTTTTTCAATCTGTGATTTATT
Unaligned ( gi|22 ): TAGCCAAATAGATATGGGACAATTAAATTCAATCAATGATACAAAGTTAAATAATTTCCAATCTGGGATCTAT
Unaligned ( gi|23 ): GGGAGCGGTAATAAAGTTGAAAGAGGACAAAACAAAATTTTAAAAAATAATAAAATAAAAACAAAATGGGA
Unaligned ( gi|24 ): TGTCGGGCAGCGGGGGTACTGAAGTTGAAAAGGGGCAGCGTATTTCAATACCA
Unaligned ( gi|26 ): ATGATACAAAGTTTTTCCAATCTGTGATCTATTT