lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 2222 000000000000000000000000000000000000000000 1 111111111 444444444444444444 11 2222222222222222 111111111 11111 444444444444 11 1 55555555555555555555555555 7777777777777777777777 11 2222222 222222222 555555555555555555 11111 2222222 3333333333333333 111111111111111111 9999999999999999999999999999999999
lowQualScore : 6666 444444444444444444444444444444444444444444 0 555555555 3 999999999999999999 77 66 3 6666666666666666 222222222 00000 3 0 3 4 3 44 3 000000000000 11 3 0 777 88888888888888888888888888 1 3 3 6666666666666666666666 5 99 2222222 3 3 3 99 333333333 000000000000000000 0 3 00000 444 44 3 0000000 4 5 6666666666666666 777 0 333333333333333333 4 66 6666666666666666666666666666666666 66 4
lowQualScore : .... .......................................... . ......... . .................. .. .. . ................ ......... ..... . . . . . .. . ............ .. . . ... .......................... . . . ...................... . .. ....... . . . .. ......... .................. . . ..... ... .. . ....... . . ................ ... . .................. . .. .................................. .. .
lowQualScore : 0000 000000000000000000000000000000000000000000 0 444444444 8 999999999999999999 55 99 4 6666666666666666 777777777 00000 1 7 3 8 3 33 3 999999999999 99 6 6 888 88888888888888888888888888 4 6 9 2222222222222222222222 7 99 7777777 6 6 6 22 999999999 333333333333333333 8 3 88888 111 66 3 2222222 8 2 1111111111111111 000 8 555555555555555555 4 11 0000000000000000000000000000000000 99 4
consensus : ACAATTCCTATTATTACATTGCTCNGTCCCTTGAC-GAACAACAATNCGCAACTCC-TCC-TGTG---ACAACAACAGCNCG--G------A--AACA-CAA--TGTAT-CGCTG----------AAGATA------C--TG-----CTGTGGAATATT-CGCCCA-TGTC-TGAATCACGT--CACG-CTCCAG-TTG-ACCAACATTCTGTTGTTGGGG---TAGCTGTT-------GTGT-----------G---TCATACGAGGTATTGA-A-TATC-TTAA--AC-----A-CGCTGTTACCGATTTTGTG-A-T---T-T-T-TGNTATGAGGGTGACATTA-A---T-TAATCAATTGTTAC---GATT-AACTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGA--ACATC-TC-AAAT-AGAATGTNTTAAA----AT-A--T-GTT-TTAATATTGATA---AGATG--C----G----TT----GG-TTT--GTTTCCA----ATGTAAAA-----AAAA---------CAGGT-GGCCGGTTAG-AAATGT
Reference ( gi|5 ) : ACAATCACGATT--TACAATACTCCGTTTTTTGACCGAAC--TAATATG-AATTCC-TCC-TGTG---ACAACAACAGCTCG--G------A--AACG-CAA--TGCAT-CTCTG----------AAGATA------C--TG-----CTGCGGAATATT-CACCCA-TACC-TGAATCACTT--AGCT-CTACAA-TTG-ACCAACATTATGTTGTTGGGG---TAGCTGTT-------GTAT-----------G---TCATACGAAGTATTGC-A-TATT-TTAA--AC-----A-CGCTGTTAGTGATTTTGTG-A-T---T-T-T-TACTATGAGGGTGACATCA-A---A-TAATCAATTGTTAC---TATTCACCTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGA--ACATC-TG-AAGT-AAAATGTATTAAA----AT-A--T-ATTGTTAATATTGATA---AGATG--C----G----TT----GG-TTT--GTT--------GTGTAGAAT----AAAA---------CAGGC-GGCCGGTTAG-AAATGT
gi|1 : ACAATTCCTATTATTACATTA-TCAGTTT---AA--GAAC----ATTTGCAACTCT-TTC-TGTG---ACAACAACAGTACG-------------ACA-C----TTCGC-CTTCG----------TGGACA------CAATGTATCACTGTGGAACCTG-CGCACG-TATC-TGAATCACGT--CACG-TTCCAG-TTG-GCTA-CATTCTGTTGTTGGGG---TAGCTGTT-------GT-T-----------G---CCATGCGAGGTATCGA-AATAGC-TGAACGACTG---A-CGCCGTTACTGATTGTGTG-A-C---TGT-T-TAATTTAAGGGTGTCATTA-T---T-TAATCAATTAGAAA---GATTTAACTACTCG-CTCATCTTCAATGAA-A-T-A-T-T-TGAGA--ACATC-TC-AAGT-AAAATGTTTTAAA----A--A--T-GTTA-TAATATTGATA---ACATG--C----A-----T----GG-TTT--GCTTCCA----ATGCAAAAC----AAAT---------CAGGT-GGCCGGTTAG-AA
gi|3 : aTGCTCCGTCCCTTGAC--AACAACAATACG-A---CCATCC----------AAC--C--CTCGTGG------ACAAACA-CAA--TGTAT-TGATG----------AAGATA------C--TG-----CTGTGGAATATT-CGCCCA-TGTC-TAAATCACGT--CACA-ATCCGG-TTG-ACCAATATTCTGTTGTTGGGG---TGGCTGTT-------GTtttcagcgtattttacattgaaatatgttttagtgtaacagtatgtagaagcataatcaaatacaa
gi|7 : gtattacatacactaaacataatttttaaccggtcagcttgcttttttttcaatttgggaataaaccaacaaacacatgtcgatatttaaatcatcttttaatacattatattgatgatgttattagaataagtaattgaaaaagagaattttcatcgtgacatagatcaattaatgccaccctcgtaacaataagtcagaaaatagcaatagtgttgttcagttatttcagttcctcgtatCC-TCC-TACG---CCAACAGCAGTATG--G------A--TAC---AA--TGTAT-GGCTG----------AAAATA------A--TG-----GTGTGGAATATT-GACCCA-TGTC-TGAATCACGT--CACG-CTTCAG-TTG-ACCAACAttccgcaggacatggtcatataggtattcaagaaagttta
gi|6 : ataaatgagtaataacaaatgatgagtgtgatgttaccctcataccaaaataccacatgatcaggaacagcgtcgtttagcgatttttatacatcgtttgacacCC-TCCCTGTG---ACAACGAGAG----------------AACGACATCTTGCGT-TCTTGGAATCACAAAAAAATA------T--TG-----CTGTGGAAAATT-CGCTTA-TGTC-TGAATGGCTT--CACG-CTCCAG-GTT-ATCAACATTCTCTTGTTGgtcagtattcagtttaattaaatgggatattctattg
gi|17 : aagttacacaatcagttactgcatcgaacagctatttcaatacattgcacccCC-TGTGGCAACAACAACATCTCG--ACCTCATG--AACA-CAA--TGTAT-CACTG----------AAGATA------T--TG-----CTGTGGAATATA-CGCCAA-CATC-TTAATcattgcctcaggaggggatgagggttctgattttgtgatgttttttaaaagagggtgacatttatttttcaattgatacgatttaacttcttgatttaatttcaatggaattttctgattacatctcaagcaaaaatgttttta
gi|14 : G--G------A--AAC---AA--TGTAT-GATAG----------AA-ATA------C--TA-----CTTTGGAATATC-CTTCCA-TGTC-TGAATAACGT--CACG-TTCCGG-TAA-ACCAACATTTTGTTGATGCGG---TAGCTGTT-------GT-T-----------G---CCGTA-GAAAT
gi|4 : ttacaataatcattctcacgatatctcgccttaatACA-CAA--TGAATGCT---------------GATG------C--TG-----ATGCT-ACTATT-CGATTA-TGTC-TGAATCACGT--CACA-TTCCAG-TTG-ACCAATATTCTGTCGTTGGGG---TAGCTggggcctacgaggtattgaactagcttaa
gi|18 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatacatttctaacctgctacttgtcctttttagatcggaaacaaatccgacatatataaatatcaatgttaaaatataagacatttaaaacattctctttgagatgttttcataaaatatcatagaaaaaaacgagtagtttaatcaaaacagttcattaaataatgtcagcctcctaacaaaaagtcataatatcagtaacagcgttgttactgcacgacatcacaccctcatggACA-CAA--TGTAT-CGGTG----------GCAATA------C--TG-----GTGTGTAGTATT-TGTCTAATAC--TGAATCA
gi|2 : tGTAT-CGTTG----------AAGATA------C--TG-----CTGCAGAATATC-CATCCA-TGTC-GGAATCAGGT--CACG-CTCCCG-TTG-ACCAGTATTATGTTGATGGGT---TAGCTATT-------GTggtcacactcaaattgaaaa
gi|12 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataatttctaaacggatgtctttttttaaaatttgcagcaaatctatggacagatcttatcaatattaagacatcttttgacacattctatttgagatgttctcatacaatttaaatggaaattagcgagtagataactcgttacaaatgattaaaagatgcaaccctcataacaaaatgtcgccaaagcagtaacggtgttgttcgtttattgcagtacctcgttaagccatctcaccattacgCTG----------AAGATATGCCTGC--TG-----CTGTGGAA-ATTATACCCA-TGTC-TGAATCACGT--CACA-CT-CAAGTTG-AACAACATTCTGTTGTTGGGGAGCTGGTTGTT-------GTGTCACGGGAACGGG---TTATGCGAAGTGT-AC--------TTAC--CC-----A-GGGTGTTCCCGAGTTAATG-C-C---T-T-TATGCTATG-GGGTAACATTT-A---T-CAACTAATTGTTAC---TA---A-----TCG-ATTATTTTCAATtgacgcatcagtgactagttgtcatat
gi|16 : TGTGGAAAAAT-CATCCA-TGTTGTGACTCCC-----GCCACTCCAG-TTG-CTCAACATTTTGATGTTGGAG---TAGTGGTTTCAGCAAGAATGG---------G---TCATAAGAGGCATTGtcaa
gi|7 : AATATT-C---CA-CACC----ATTATTTTCAGCC-ATACA--TTGTATC--CATACTGCTGTTGGCG---TAGGAG---------G-GT-----------G---TCAAACGATGTATAAA-A--ATCGCTAA--ACG----A-CGCTGTTCCTGATCATGTG-G-TA--T-T-T-TGGTATGAGGGTAACATCACA---C-TCATCATTTGTTAT---TACTCATTTAt
gi|8 : aTA-ATCAAAATTATATTTTT-------CAATTGTA-------ATAA-----------GAAATCATGTGAGGTATTGAGA-TATT-ATAT--AT-----A-TGCT--TA-----TTTGTGTA-T---T-T-T-TGTTATGAAGGTGACATTT-A---T-TAATCAAGTGTTgacccatgtctgaatcacgtcacgcttcagttgaccaacagtcagtattcagtttaattaaatgggatattctattg
gi|3 : atgATACGAGGAACTGA-AATAAC-TGAA--CA-----A-CACTATT-GCTATTTTCTG-A-C---T-TAT-TGTTACGAGGGTGGCATTA-A---T-TGATCTA-TGTCAC---GATGAAAATTCTC--T---TTTTCAATTAC-T-TAT-T-C-TAATA--ACATCATC-AA-T-ATAATGTATTAAA----AG-A--TGATT-TAAATATCGACA---TG-TGTTT----G----TT----GG-TTT--ATTCCCAAA--TTG-AAAAA----AAAG---------CAAGCTGACCGGTTAA-AAATctgagaacgtctctcatagaatgttttaaagtatgttttaatatttataggatgcgtttgtttgtttgcttgcaatgtaaaaaggaaccgatgggcggttcggtatgttgttca
gi|2 : gtattacatacactaaacataACGAGGTACTGC-A--AT----AA--ACGAACAA-CACCGTTACTGCTTTGGCG-A-CA--T-T-T-TGTTATGAGGGTTGCATCT-T---T-TAATCATTTGTAAC---GAGTTATCTACTCG-CTAATTTCCATTTAA-A-T-TGT-A-TGAGA--ACATC-TC-AAAT-AGAATGTGTCAAA----AG-A--T-GTC-TTAATATTGATA---AGATC--T----G----TCCATAGA-TTT--GCT--------GC---AAATTTTAAAAA---------AAGAC-ATCCGTTTAG-AAATtgctccgtcccttgacaacaacaatacgaccatccaaccctcgtggacaaacacaatgtattgatgaagatactgctgtggaatattcgcccatgtctaaatcacgtcacaatccggttgaccaatattctgttgttggggtggctgttgtttccgcaggacatggtcatataggtattcaagaaagttta
gi|4 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataA--AC-----AACGCTGTTACTGATATTATG-ACT---T-T-T-TGTTAGGAGGCTGACATTA-T---T-TAATGAACTGTTTT---GATTAAACTACTCG-TTT-TTTTCTATGAT-A-T-T-T-TATGAAA--ACATC-TC-AAAG-AGAATGTTTTAAATGTCTT-A--T-ATT-TTAACATTGATATTTATATA--T----G----TC----GGATTT--GTTTCCG----ATCTAAAA-----AGGA---------CAAGT-AGCAGGTTAG-AAATGTtaagccatctcaccattacggtatcgttgaagatactgctgcagaatatccatccatgtcggaatcaggtcacgctcccgttgaccagtattatgttgatgggttagctattgttgacgcatcagtgactagttgtcatat
gi|6 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatTGATTTTGTG-A-TGTTT-T-T-TAAAA-GAGGGTGACATTT-A---T-TTTTCAATTGATAC---GATTTAACTTCTTGATTTAATTTCAATGGA-ATT-T-T-C-TGATT--ACATC-TC-AAGCAAAAATGTTTTactgcacgacatcacaccctcatggacacaatgaatgctgatgctgatgctactattcgattatgtctgaatcacgtcacattccagttgaccaatattctgtcgttggggtagct
gi|13 : aagttacacaatcagttactgcatcgaacagctatttcaatacattgcaccccctccctgtgacaacgagagaacgacatcttgcgttcttggaatcacaaaaaaatattgctgtggaaaattcgcttatgtctgaatggcttcacgctccaggttatcaacattctcttgttgcattgcctcaggaggggatgagggttcATTTTGCG-A-TG--T-T-T-TATTATAACGGTGACATTA-ATTAACTAATCAATAGTTAC---------------------ATT------AAA-A-T-TGT-C-TAAGA--AAATC-TC-AAAT-AGAATGAATTAAA----A--AGCT-GTT-TTAATATTTATA---GGATG--C----GTTTATT----GG-TTT--ACTTCCA----ATGTAA-------AAAG---------CAGGT-GAAAAGTTAG-AAATGta
gi|15 : ttgcttTTTTTTA-C-T---T-T-T-TGCTATGAGGGCGACATTA-A---T-AAACCACTTATTACAAATAT----------G-TTTATTTTCGGTGAC-ATT-T-T-C-TGAAA--ACATC-TC-AA---AAGCTGTTTTAAT----AT-ctgtccggtgtat
gi|9 : TGTG-A-TGC-T-C-T-TA-TAT-----TGAAATTA-A---A-T---CAAT-GTTGC---TATT-----------TCCATTCTCAACGAA-A-T-T-TAT-TGAGATCATATC------------ATATAT-AGA----AT-G--T-ATTAT-AATATTGATC---ACATG--CAATTG----TT----GG-TTG--CTTCCA-----ATGTAAAA-----AATA---------CATGT-GGCCGGTTGG-GAAaataagt
gi|10 : tttgttttaacTATCAGGGTGACATTA-A---T-AAATCAGTTGTTAC---AATTTAACTTTATG-TTTATGTCCAATGGA-ATT-T-T-C-TGAGA--ACATC-TC-AAAC-TGAACGTTTTAAA----GG-A---------TGAT-TTGATG---TG-TT--T----G----TT----GG-TTT--GTTTGCA----ATGTTTAAT----AATA---------CTGGT-GGTCGGTTTG-AAATaagagaggttaaacctgtttgatggagttactcactctcgctcttccaatttcattactgtatt
gi|11 : tgcatgaaaaacatattttatacaatttataaccaagtgttggccaggtgttctactatgaacaaATTA-A---T-TAACCAATTGTTGTG--TTTTCA---ACTCG-TTTATTTTCAATGATTA-T-T-T-T-TGGGA--ATAT--TGCAAAC-AGGATGTATTAAC----ACGA--T-GCT-TTGATATTGATA---AGATG--C----G----TT----GA-TTTCCATCCA------ATGTAAAAA----AAAAAAAAGAGAGCAGGT-GGCCGACTAGAAAATGT
gi|8 : ttgCA-TTTATT---AATCAA-G-TGT-T-C-TGAGA--ACGTC-TC-TCAT-AGAATGTTTTAAA----GT-A--T-GTT-TTAATATTTATA---GGATG--C----G----TT----TG-TTT--GTTTGCTTGCAATGTAAAAA----GGAA---------CCGAT-GGGCGGTTCG-GTATGTtttgttcaatgtacataatgtatataaccttttccagttttattactttatt
gi|19 : atgtaatcaaaattatatttttcaattgtaataagaaatcatgtgaggtattgagatattatatatatgcttatttgtgtatttttgttatgaaggtgaTTCTCAATGAA-A-T-TCT-C-TGATA--TCATC-TC-AAAT-ATAATTTATTAAA----AT-A--T-GTT-TTAGTATGCATA---AGATG--tgttca
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TATACAGTAATTGTTTGTACTTGTATACTACAGTTTTAGAAACTCGCCACAAACAAACA
Unaligned ( gi|21 ): TCAGTTAGCGTTGTTAATGTGGTGCTGTTGCCATGTACACGAAAATCTTTTAACCATG
Unaligned ( gi|22 ): TATTACTATATCAGTTTACCCTGTATATCCGAGCATACGACATACA
Unaligned ( gi|23 ): ATATATTTGTAATAAAATGAACAAACAAAAATTAAACGA
Alignments
lowQualScore : 11 111 111 6666666666666666666666666 111 8888888888888888888888888888888888888888888 111111 777777777777777777777777777777 33333333333333333333 11 2222222222222 1111111 111111111111 2222222222
lowQualScore : 2 3 88 77 1 999 555 8888888888888888888888888 7 6 1 111 2222222222222222222222222222222222222222222 6 0 000000 0 3 3 3 2 4 222222222222222222222222222222 8888 4 4 4 33333333333333333333 5 666 3 3 44 3 3 3 11 44 2 6666 6666666666666 2 3 6 6 9 6 3 3 3 3 33 1 6666666 55 3 3 666 000000000000 8888 4 4 777 55 4 1 4 4 1111111111 4 4
lowQualScore : . . .. .. . ... ... ......................... . . . ... ........................................... . . ...... . . . . . . .............................. .... . . . .................... . ... . . .. . . . .. .. . .... ............. . . . . . . . . . . .. . ....... .. . . ... ............ .... . . ... .. . . . . .......... . .
lowQualScore : 5 0 55 33 0 333 000 0000000000000000000000000 0 7 7 777 2222222222222222222222222222222222222222222 6 5 555555 7 3 3 3 6 4 222222222222222222222222222222 5555 0 0 4 66666666666666666666 0 555 3 3 66 3 3 3 22 22 9 1111 7777777777777 9 1 2 2 2 2 1 1 1 1 22 0 5555555 00 6 6 444 000000000000 5555 0 0 000 55 0 1 0 0 5555555555 0 0
consensus : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACAACAACAG----------------CTCGG------AA--------------ACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTT---------G-T----GT------------GTCAT----ACGAGGTAT-TG-A-A-TAT-C-TTAA--AC-----A-CGCTGTTACTGATTTTGTG-A-T--T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----GG-TTTGCTT-C---CAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
Reference ( family-1077 ) : ACAATTCCTATTATTACATTGCTCNGTCCCTTGAC-GAACAAC------AATNC---G------CAACTCCTCC-TGTG---ACAACAACAG----------------CNCGG------AA--------------ACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTT---------G-T----GT------------GTCAT----ACGAGGTAT-TG-A-A-TAT-C-TTAA--AC-----A-CGCTGTTACCGATTTTGTG-A-T--T-T-T-TGNTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----GG-TTTGTTT-C---CAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
gi|1 : ACAATTCCTATTATTACATTA-TCAGT---TTAA--GAACA----------TTT---G------CAACTCTTTC-TGTG---ACAACAACAG----------------TACGA------CACTTCGCCTTCGTGGACACAATGTATCACTG------------------TGGAACCTG-CGCACGTAT-C-TGAATCACGTCACGTTCCAGTTGGCTA-CATTCTGTTGTTGGGGTAGCT-GTT---------G-T-----T------------GCCAT----GCGAGGTAT-CG-A-AATAG-C-TGAACGACTG---A-CGCCGTTACTGATTGTGTG-A-C--TGT-T-TAATTT--AAGGGTGTCATTA-TTTAA----TCAATTAGAAAGA-TTTAA-CTACTCG-CTCATCTTCAATGAA-A-T-A-T-T-TGAGAACATC-TCA-A-GT-AAAATGTTTTAAA----A--A--TG-TT-ATAATATTGATA---ACATG--C----A-----T----GG-TTTGCTT-C---CAA--TG-CAAAA-C-AAAT---------CAGG-TGGCCGGTTAG-AA
gi|10 : aTAT--CAGGGTGACATTA-ATAAA----TCAGTTGTTACAA-TTTAA-CTTTATG-TTTATGTCCAATGGA-A-T-T-TTC-TGAGAACATC-TCA-A-AC-TGAACGTTTTAAA----GG-A--TG-AT-TTGATGT----------GTT--T----G----TT----GG-TTTGTTT-G---CAA--TGTTTAAT-A-ATA----------CTGG-TGGTCGGTTTG-AAATtttcagcgtattttacattgaaatatgttttagtgtaacagtatgtagaagcataatcaaatacaa
gi|11 : tgcatgaaaaacatattttatacaatttataaccaagtgttggccaggtgttctactatgaacaaATTA-ATTAA----CCAATTGTTGTGT-TT-T--CAACTCG-TTTATTTTCAATGATTA-T-T-T-T-TGGGAATATT-GCA-A-AC-AGGATGTATTAAC----ACGA--TG-CT-TTGATATTGATA---AGATG--C----G----TT----GA-TTTCCAT-C---CAA--TG-TAAAA-A-AAAAAAAAGAGAGCAGG-TGGCCGACTAGAAAATGT
gi|12 : ttgCTGAAGATATGCCTGCTGCTGTGGAA-ATTATACCCATGT-C-TGAATCACGTCACACTCAAGTTGAACAACATTCTGTTGTTGGGG-AGCTGGTT---------GTT----GT------------GTCACGGGAACGGGTTATGCG-A-AGTGTAC-TTAC--CC-----A-GGGTGTTCCCGAGTTAATG-C-C--T-T-TATGCTAT--G-GGGTAACATTT-ATCAA----CTAATTGTTAC----T-AA-----TCG-ATTATTTTCAATtttgttcaatgtacataatgtatataaccttttccagttttattactttatt
gi|13 : TTGCTTATTTTGCG-A-TG-T-T-T-TATTAT--AACGGTGACATTA-ATTAACTAATCAATAGTTAC-A-TT-AA-----------------------A-A-T-TGT-C-TAAGAAAATC-TCA-A-AT-AGAATGAATTAAA----A--AGCTG-TT-TTAATATTTATA---GGATG--C----GTTTATT----GG-TTTACTT-C---CAA--TG-T--AA-A-AAG----------CAGG-TGAAAAGTTAG-AAATGtcaa
gi|14 : GG------AA--------------ACA--ATGTAT-GATAGAAATA------CTACTTTGGAATATC-CTTCCATGT-C-TGAATAACGTCACGTTCCGGTAAACCAACATTTTGTTGATGCGGTAGCT-GTT---------G-TTGCCGTAGAAATGG----GGCCT----ACGAGGTAT-TG-A-ACTAG-C-TTAA--ctgtccggtgtat
gi|15 : ttacaataatcattctcacgatatctcgccttaatTTTTTTA-C-T--T-T-T-TGCTAT--GAGGGCGACATTA-ATAAA----CCACTTATTACAA-AT-A-------TG-TTTATTTTCGGTGAC-ATT-T-T-C-TGAAAACATC-TCA-A-A--AG-CTGTTTTAAT----AT-
gi|16 : TGTGGAAAAAT-CATCCATGT-TGTGACTCCCGCCAC--TCCAGTTGCTCAACATTTTGATGTTGGAGTAGTG-GTTTCAGCAAGAA-T----GG------------GTCAT----AAGAGGCAT-TG-aataagt
gi|17 : CC-TGTGGCAACAACAACAT----------------CTCGACCTCATGA--------------ACACAATGTATCACTGAAGATA------TTGCTGTGGAATATA-CGCCAACAT-C-TTAATt
gi|18 : --------------ACACAATGTATCGGTGGCAATA------CTGGTGTGTAGTATT-TGTCTA-ATAC-TGAATCAGGTCACACTCAAATTGA
gi|19 : tTTCTCAATGAA-A-T-TCT-C-TGATATCATC-TCA-A-AT-ATAATTTATTAAA----AT-A--TG-TT-TTAGTATGCATA---AGATG--aaa
gi|2 : gtt----ACGAGGTAC-TGCA-A-TA-------A--ACGAACAA-CACCGTTACTGCTTTGGCG-A-CA-T-T-T-TGTTAT--GAGGGTTGCATCT-TTTAA----TCATTTGTAACGAGTT-AT-CTACTCG-CTAATTTCCATTTAA-A-T-TGT-A-TGAGAACATC-TCA-A-AT-AGAATGTGTCAAA----AG-A--TG-TC-TTAATATTGATA---AGATC--T----G----TCCATAGA-TTTGCTG-C---AAA--TT-TTAAA-A-AAA----------GACA-T--CCGTTTAG-AAAT
gi|2 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataGTATCGTTGAAGATA------CTGCTGCAGAATATC-CATCCATGT-C-GGAATCAGGTCACGCTCCCGTTGACCAGTATTATGTTGATGGGTTAGCT-ATT---------G-T----taagccatctcaccattacggtatcgttgaagatactgctgcagaatatccatccatgtcggaatcaggtcacgctcccgttgaccagtattatgttgatgggttagctattgttgacgcatcagtgactagttgtcatat
gi|3 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataatttctaaacggatgtctttttttaaaatttgcagcaaatctatggacagatcttatcaatattaagacatcttttgacacattctatttgagatgttctcatacaatttaaatggaaattagcgagtagataactcgttacaaatgattaaaagatgcaaccctcataacaaaatgtcgccaaagcagtaacggtgttgttcgtttattgcagtacctcgttaagccatctcaccattacgAT----ACGAGGAAC-TG-A-AATAA-C-TGAA--CA-----A-CACTATTGCT-ATTTTCTG-A-C--T-TAT-TGTTAC--GAGGGTGGCATTA-ATTGA----TCTA-TGTCACGA-TG-AA-A-ATTC--TCT-TTTTCAATTAC-T-TAT-T-C-TAATAACATCATC--A-AT-ATAATGTATTAAA----AG-A--TGATT-TAAATATCGACA---TG-TGTTT----G----TT----GG-TTTATTC-C---CAAATTG-AAAAA-A-AAG----------CAAGCTGACCGGTTAA-AAATtgacgcatcagtgactagttgtcatat
gi|3 : gtattacatacactaaacataATTGCTCCGTCCCTTGAC--AACAAC------AATAC---GACCATCCAAC-CCTCG-TG-G---ACAA-------------------------------------------------ACACAATGTATTGATGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TAAATCACGTCACAATCCGGTTGACCAATATTCTGTTGTTGGGGTGGCT-GTT---------G-T----TTCCGCAGGACATGGTCAT----AT-AGGTAT-TC-A-A-tgctccgtcccttgacaacaacaatacgaccatccaaccctcgtggacaaacacaatgtattgatgaagatactgctgtggaatattcgcccatgtctaaatcacgtcacaatccggttgaccaatattctgttgttggggtggctgttgtttccgcaggacatggtcatataggtattcaagaaagttta
gi|4 : gtattacatacactaaacataatttttaaccggtcagcttgcttttttttcaatttgggaataaaccaacaaacacatgtcgatatttaaatcatcttttaatacattatattgatgatgttattagaataagtaattgaaaaagagaattttcatcgtgacatagatcaattaatgccaccctcgtaacaataagtcagaaaatagcaatagtgttgttcagttatttcagttcctcgtA--AC-----AACGCTGTTACTGATATTATG-ACT--T-T-T-TGTTAG--GAGGCTGACATTA-TTTAA----TGAACTGTTTTGA-TT-AAACTACTCG-TTT-TTTTCTATGAT-A-T-T-T-TATGAAAACATC-TCA-A-AG-AGAATGTTTTAAATGTCTT-A--TA-TT-TTAACATTGATATTTATATA--T----G----TC----GGATTTGTTT-C---CGA--TC-TAAAA-A-GGA----------CAAG-TAGCAGGTTAG-AAATGTgaaagttta
gi|4 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaat--------------ACACAATGAAT-GCTGATGCTG------ATGCT----ACTATT-CGATTATGT-C-TGAATCACGTCACATTCCAGTTGACCAATATTCTGTCGTTGGGGTAGCT-actgcacgacatcacaccctcatggacacaatgaatgctgatgctgatgctactattcgattatgtctgaatcacgtcacattccagttgaccaatattctgtcgttggggtagct
gi|5 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatacatttctaacctgctacttgtcctttttagatcggaaacaaatccgacatatataaatatcaatgttaaaatataagacatttaaaacattctctttgagatgttttcataaaatatcatagaaaaaaacgagtagtttaatcaaaacagttcattaaataatgtcagcctcctaacaaaaagtcataatatcagtaacagcgttgttactgcacgacatcacaccctcatggACAATCACGATT--TACAATACTCCGTTTTTTGACCGAAC--T------AATAT---G-------AATTCCTCC-TGTG---ACAACAACAG----------------CTCGG------AA--------------ACGCAATGCATCTCTGAAGATA------CTGCTGCGGAATATT-CACCCATAC-C-TGAATCACTTAGCTCTACAATTGACCAACATTATGTTGTTGGGGTAGCT-GTT---------G-T----AT------------GTCAT----ACGAAGTAT-TG-C-A-TAT-T-TTAA--AC-----A-CGCTGTTAGTGATTTTGTG-A-T--T-T-T-TACTAT--GAGGGTGACATCA-AATAA----TCAATTGTTACTA-TTCAC-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TGA-A-GT-AAAATGTATTAAA----AT-A--TA-TTGTTAATATTGATA---AGATG--C----G----TT----GG-TTTGTT--------G--TG-TAGAATA-AAA----------CAGG-CGGCCGGTTAG-AAATGT
gi|6 : C-GAACAGCTATTTCAATACATTG------CACCCCCTCCCTGTG---ACAACGAGAGAACGACATCTTGCGTTCTTGG------AA--------------TCACAA---------AAAAATA------TTGCTGTGGAAAATT-CGCTTATGT-C-TGAATGGCTTCACGCTCCAGGTTATCAACATTCTCTTGTTG
gi|6 : aagttacacaatcagttactgcatGTT-CTGATTTTGTG-A-T--G-T-T-TTTTAAAAGAGGGTGACATTT-ATTTT----TCAATTGATACGATTT-AA-CTTCTTGATTTAATTTCAATGGA-ATT-T-T-C-TGATTACATC-TCA-A-GCAAAAATGTTTTcattgcctcaggaggggatgagggttctgattttgtgatgttttttaaaagagggtgacatttatttttcaattgatacgatttaacttcttgatttaatttcaatggaattttctgattacatctcaagcaaaaatgttttta
gi|7 : aagttacacaatcagttactgcatcgaacagctatttcaatacattgcaccccctccctgtgacaacgagagaacgacatcttgcgttcttggaatcacaaaaaaatattgctgtggaaaattcgcttatgtctgaatggcttcacgctccaggttatcaacattctcttgttgcattgcctcaggaggggatgaggCATACTGCTGTTGGCGTAGGA-G-----------G------GT------------GTCAA----ACGATGTAT-AA-A-A--AT-CGCTAA--ACG----A-CGCTGTTCCTGATCATGTG-G-TA-T-T-T-TGGTAT--GAGGGTAACATCACACTCA----TCATTTGTT---------A-TTACTCA-TTTATta
gi|7 : CCTCC-TACG---CCAACAGCAG----------------TATGG------A----------------TACAATGTATGGCTGAAAATA------ATGGTGTGGAATATT-GACCCATGT-C-TGAATCACGTCACGCTTCAGTTGACCAACAGTCAGTgatacaatgtatggctgaaaataatggtgtggaatattgacccatgtctgaatcacgtcacgcttcagttgaccaacagtcagtattcagtttaattaaatgggatattctattg
gi|8 : ataaatgagtaataacaaatgatgagtgtgatgttaccctcataccaaaataccacatgatcaggaacagcgtcgtttagcgatttttatacatcgtttgacacTCAT----GTGAGGTAT-TG-AGA-TAT-T-ATAT--AT-----A-TGCT--TA-----TTTGTGTA-T--T-T-T-TGTTAT--GAAGGTGACATTT-ATTAA----TCAAGTGTTattcagtttaattaaatgggatattctattg
gi|8 : atgtaatcaaaattatatttttcaattgtaataagaaaCA-TTTATT---AATCAA-G-TGT-T-C-TGAGAACGTC-TCT-C-AT-AGAATGTTTTAAA----GT-A--TG-TT-TTAATATTTATA---GGATG--C----G----TT----TG-TTTGTTTGCTTGCAA--TG-TAAAA-AGGAA----------CCGA-TGGGCGGTTCG-GTATGTctgagaacgtctctcatagaatgttttaaagtatgttttaatatttataggatgcgtttgtttgtttgcttgcaatgtaaaaaggaaccgatgggcggttcggtatgttgttca
gi|9 : atgtaatcaaaattatatttttcaattgtaataagaaatcatgtgaggtattgagatattatatatatgcttatttgtgtatttttgttatgaaggtgaTGTG-A-TGCT-C-T-T-ATAT-------TGAAATTA-A---A----TCAAT-GTTGCTA-TT------------TCCATTCTCAACGAA-A-T-T-TAT-TGAGATCATA-TCATATAT-AGAATGTATTA-------------------TAATATTGATC---ACATG--CAATTG----TT----GG-TT-GCTT-C---CAA--TG-TAAAA-A-ATA----------CATG-TGGCCGGTTGG-GAAtgttca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATACAGTAATTGTTTGTACTTGTATACTACAGTTTTAGAAACTCGCCACAAACAAACA
Unaligned ( gi|21 ): TCAGTTAGCGTTGTTAATGTGGTGCTGTTGCCATGTACACGAAAATCTTTTAACCATG
Unaligned ( gi|22 ): TATTACTATATCAGTTTACCCTGTATATCCGAGCATACGACATACA
Unaligned ( gi|23 ): ATATATTTGTAATAAAATGAACAAACAAAAATTAAACGA
Alignments
lowQualScore : 11 111 111 6666666666666666666666666 111 9999999999999999999999999999999999999999999 111111 777777777777777777777777777777 33333333333333333333 11111 2222222222222 1111111 111111111111 2222222222
lowQualScore : 1 1 88 6 999 555 4444444444444444444444444 7 6 1 111 3333333333333333333333333333333333333333333 6 0 000000 0 3 3 3 2 4 222222222222222222222222222222 8888 4 4 4 33333333333333333333 5 3 11111 3 3 3 44 2 6666 6666666666666 2 3 6 6 9 6 3 3 3 3 33 1 6666666 55 3 3 666 444444444444 8888 777 4 55 4 1 4 4 1111111111 4 4
lowQualScore : . . .. . ... ... ......................... . . . ... ........................................... . . ...... . . . . . . .............................. .... . . . .................... . . ..... . . . .. . .... ............. . . . . . . . . . . .. . ....... .. . . ... ............ .... ... . .. . . . . .......... . .
lowQualScore : 0 0 55 7 333 000 2222222222222222222222222 0 7 7 777 4444444444444444444444444444444444444444444 6 5 555555 7 3 3 3 6 4 222222222222222222222222222222 5555 0 0 4 66666666666666666666 0 7 44444 6 6 6 66 9 1111 7777777777777 9 1 2 2 2 2 1 1 1 1 22 0 5555555 00 6 6 444 000000000000 5555 000 0 55 0 1 0 0 5555555555 0 0
consensus : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACAACAACAG----------------C--------------TCGG------AAACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTT---------G-T----GT------------GTCAT----ACGAGGTAT-TG-A-A-TAT-C-TTAA--AC-----A-CGCTGTTACTGATTTTGTG-A-T-T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
Reference ( family-1077 ) : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACAACAACAG----------------C--------------TCGG------AAACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTT---------G-T----GT------------GTCAT----ACGAGGTAT-TG-A-A-TAT-C-TTAA--AC-----A-CGCTGTTACTGATTTTGTG-A-T-T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
gi|1 : ACAATTCCTATTATTACATTA-TCAGT---TTAA--GAACA----------TTT---G------CAACTCTTTC-TGTG---ACAACAACAG----------------TACGACACTTCGCCTTCGT------GGACACAATGTATCACTG------------------TGGAACCTG-CGCACGTAT-C-TGAATCACGTCACGTTCCAGTTGGCTA-CATTCTGTTGTTGGGGTAGCT-GTT---------G-T-----T------------GCCAT----GCGAGGTAT-CG-A-AATAG-C-TGAACGACTG---A-CGCCGTTACTGATTGTGTG-A-C-TGT-T-TAATTT--AAGGGTGTCATTA-TTTAA----TCAATTAGAAAGA-TTTAA-CTACTCG-CTCATCTTCAATGAA-A-T-A-T-T-TGAGAACATC-TCA-A-GT-AAAATGTTTTAAA----A--A--TG-TT-ATAATATTGATA---ACATG--C----A-----T----G---G-TTTGCTTCCAA--TG-CAAAA-C-AAAT---------CAGG-TGGCCGGTTAG-AA
gi|10 : aTAT--CAGGGTGACATTA-ATAAA----TCAGTTGTTACAA-TTTAA-CTTTATG-TTTATGTCCAATGGA-A-T-T-TTC-TGAGAACATC-TCA-A-AC-TGAACGTTTTAAA----GG-A--TG-AT-TTGATGT----------GTT--T----G----TT----G---G-TTTGTTTGCAA--TGTTTAAT-A-ATA----------CTGG-TGGTCGGTTTG-AAATtttcagcgtattttacattgaaatatgttttagtgtaacagtatgtagaagcataatcaaatacaa
gi|11 : tgcatgaaaaacatattttatacaatttataaccaagtgttggccaggtgttctactatgaacaaATTA-ATTAA----CCAATTGTTGTGT-TT-T--CAACTCG-TTTATTTTCAATGATTA-T-T-T-T-TGGGAATATT-GCA-A-AC-AGGATGTATTAAC----ACGA--TG-CT-TTGATATTGATA---AGATG--C----G----TT----G---A-TTTCCATCCAA--TG-TAAAA-A-AAAAAAAAGAGAGCAGG-TGGCCGACTAGAAAATGT
gi|12 : ttgCTGAAGATATGCCTGCTGCTGTGGAA-ATTATACCCATGT-C-TGAATCACGTCACACTCAAGTTGAACAACATTCTGTTGTTGGGG-AGCTGGTT---------GTT----GT------------GTCACGGGAACGGGTTATGCG-A-AGTGTAC-TTAC--CC-----A-GGGTGTTCCCGAGTTAATG-C-C-T-T-TATGCTAT--G-GGGTAACATTT-ATCAA----CTAATTGTTAC----T-AA-----TCG-ATTATTTTCAATtttgttcaatgtacataatgtatataaccttttccagttttattactttatt
gi|13 : TTGCTTATTTTGCG-A-TGT-T-T-TATTAT--AACGGTGACATTA-ATTAACTAATCAATAGTTAC-A-TT-AA-----------------------A-A-T-TGT-C-TAAGAAAATC-TCA-A-AT-AGAATGAATTAAA----A--AGCTG-TT-TTAATATTTATA---GGATG--C----GTTTATT----G---G-TTTACTTCCAA--TG-T--AA-A-AAG----------CAGG-TGAAAAGTTAG-AAATGtcaa
gi|14 : GG------AAACA--ATGTAT-GATAGAAATA------CTACTTTGGAATATC-CTTCCATGT-C-TGAATAACGTCACGTTCCGGTAAACCAACATTTTGTTGATGCGGTAGCT-GTT---------G-TTGCCGTAGAAATGG----GGCCT----ACGAGGTAT-TG-A-ACTAG-C-TTAA--ctgtccggtgtat
gi|15 : ttacaataatcattctcacgatatctcgccttaatTTTTTTA-C-T-T-T-T-TGCTAT--GAGGGCGACATTA-ATAAA----CCACTTATTACAA-AT-A-------TG-TTTATTTTCGGTGAC-ATT-T-T-C-TGAAAACATC-TCA-A-A--AG-CTGTTTTAAT----AT-
gi|16 : TGTGGAAAAAT-CATCCATGT-TGTGACTCCCGCCAC--TCCAGTTGCTCAACATTTTGATGTTGGAGTAGTG-GTTTCAGCAAGAA-T----GG------------GTCAT----AAGAGGCAT-TG-aataagt
gi|17 : CC-TGTGGCAACAACAACAT----------------C--------------TCGACCTCATGAACACAATGTATCACTGAAGATA------TTGCTGTGGAATATA-CGCCAACAT-C-TTAATt
gi|18 : ACACAATGTATCGGTGGCAATA------CTGGTGTGTAGTATT-TGTCTA-ATAC-TGAATCAGGTCACACTCAAATTGA
gi|19 : tTTCTCAATGAA-A-T-TCT-C-TGATATCATC-TCA-A-AT-ATAATTTATTAAA----AT-A--TG-TT-TTAGTATGCATA---AGATG--aaa
gi|2 : gtt----ACGAGGTAC-TGCA-A-TA-------A--ACGAACAA-CACCGTTACTGCTTTGGCG-A-CAT-T-T-TGTTAT--GAGGGTTGCATCT-TTTAA----TCATTTGTAACGAGTT-AT-CTACTCG-CTAATTTCCATTTAA-A-T-TGT-A-TGAGAACATC-TCA-A-AT-AGAATGTGTCAAA----AG-A--TG-TC-TTAATATTGATA---AGATC--T----G----TCCATAG---A-TTTGCTGCAAA--TT-TTAAA-A-AAA----------GACA-T--CCGTTTAG-AAAT
gi|2 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataGTATCGTTGAAGATA------CTGCTGCAGAATATC-CATCCATGT-C-GGAATCAGGTCACGCTCCCGTTGACCAGTATTATGTTGATGGGTTAGCT-ATT---------G-T----taagccatctcaccattacggtatcgttgaagatactgctgcagaatatccatccatgtcggaatcaggtcacgctcccgttgaccagtattatgttgatgggttagctattgttgacgcatcagtgactagttgtcatat
gi|3 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataatttctaaacggatgtctttttttaaaatttgcagcaaatctatggacagatcttatcaatattaagacatcttttgacacattctatttgagatgttctcatacaatttaaatggaaattagcgagtagataactcgttacaaatgattaaaagatgcaaccctcataacaaaatgtcgccaaagcagtaacggtgttgttcgtttattgcagtacctcgttaagccatctcaccattacgAT----ACGAGGAAC-TG-A-AATAA-C-TGAA--CA-----A-CACTATTGCT-ATTTTCTG-A-C-T-TAT-TGTTAC--GAGGGTGGCATTA-ATTGA----TCTA-TGTCACGA-TG-AA-A-ATTC--TCT-TTTTCAATTAC-T-TAT-T-C-TAATAACATCATC--A-AT-ATAATGTATTAAA----AG-A--TGATT-TAAATATCGACA---TG-TGTTT----G----TT----G---G-TTTATTCCCAAATTG-AAAAA-A-AAG----------CAAGCTGACCGGTTAA-AAATtgacgcatcagtgactagttgtcatat
gi|3 : gtattacatacactaaacataATTGCTCCGTCCCTTGAC--AACAAC------AATAC---GACCATCCAAC-CCTCG-TG-G---ACAA-------------------------------------------------ACACAATGTATTGATGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TAAATCACGTCACAATCCGGTTGACCAATATTCTGTTGTTGGGGTGGCT-GTT---------G-T----TTCCGCAGGACATGGTCAT----AT-AGGTAT-TC-A-A-tgctccgtcccttgacaacaacaatacgaccatccaaccctcgtggacaaacacaatgtattgatgaagatactgctgtggaatattcgcccatgtctaaatcacgtcacaatccggttgaccaatattctgttgttggggtggctgttgtttccgcaggacatggtcatataggtattcaagaaagttta
gi|4 : gtattacatacactaaacataatttttaaccggtcagcttgcttttttttcaatttgggaataaaccaacaaacacatgtcgatatttaaatcatcttttaatacattatattgatgatgttattagaataagtaattgaaaaagagaattttcatcgtgacatagatcaattaatgccaccctcgtaacaataagtcagaaaatagcaatagtgttgttcagttatttcagttcctcgtA--AC-----AACGCTGTTACTGATATTATG-ACT-T-T-T-TGTTAG--GAGGCTGACATTA-TTTAA----TGAACTGTTTTGA-TT-AAACTACTCG-TTT-TTTTCTATGAT-A-T-T-T-TATGAAAACATC-TCA-A-AG-AGAATGTTTTAAATGTCTT-A--TA-TT-TTAACATTGATATTTATATA--T----G----TC----G---GATTTGTTTCCGA--TC-TAAAA-A-GGA----------CAAG-TAGCAGGTTAG-AAATGTgaaagttta
gi|4 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatACACAATGAAT-GCTGATGCTG------ATGCT----ACTATT-CGATTATGT-C-TGAATCACGTCACATTCCAGTTGACCAATATTCTGTCGTTGGGGTAGCT-actgcacgacatcacaccctcatggacacaatgaatgctgatgctgatgctactattcgattatgtctgaatcacgtcacattccagttgaccaatattctgtcgttggggtagct
gi|5 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatacatttctaacctgctacttgtcctttttagatcggaaacaaatccgacatatataaatatcaatgttaaaatataagacatttaaaacattctctttgagatgttttcataaaatatcatagaaaaaaacgagtagtttaatcaaaacagttcattaaataatgtcagcctcctaacaaaaagtcataatatcagtaacagcgttgttactgcacgacatcacaccctcatggACAATCACGATT--TACAATACTCCGTTTTTTGACCGAAC--T------AATAT---G-------AATTCCTCC-TGTG---ACAACAACAG----------------C--------------TCGG------AAACGCAATGCATCTCTGAAGATA------CTGCTGCGGAATATT-CACCCATAC-C-TGAATCACTTAGCTCTACAATTGACCAACATTATGTTGTTGGGGTAGCT-GTT---------G-T----AT------------GTCAT----ACGAAGTAT-TG-C-A-TAT-T-TTAA--AC-----A-CGCTGTTAGTGATTTTGTG-A-T-T-T-T-TACTAT--GAGGGTGACATCA-AATAA----TCAATTGTTACTA-TTCAC-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TGA-A-GT-AAAATGTATTAAA----AT-A--TA-TTGTTAATATTGATA---AGATG--C----G----TT----G---G-TTTGTT----G--TG-TAGAATA-AAA----------CAGG-CGGCCGGTTAG-AAATGT
gi|6 : C-GAACAGCTATTTCAATACATTG------CACCCCCTCCCTGTG---ACAACGAGAGAACGACATCTTGCGTTC--------------TTGG------AATCACAA---------AAAAATA------TTGCTGTGGAAAATT-CGCTTATGT-C-TGAATGGCTTCACGCTCCAGGTTATCAACATTCTCTTGTTG
gi|6 : aagttacacaatcagttactgcatGTT-CTGATTTTGTG-A-T-G-T-T-TTTTAAAAGAGGGTGACATTT-ATTTT----TCAATTGATACGATTT-AA-CTTCTTGATTTAATTTCAATGGA-ATT-T-T-C-TGATTACATC-TCA-A-GCAAAAATGTTTTcattgcctcaggaggggatgagggttctgattttgtgatgttttttaaaagagggtgacatttatttttcaattgatacgatttaacttcttgatttaatttcaatggaattttctgattacatctcaagcaaaaatgttttta
gi|7 : aagttacacaatcagttactgcatcgaacagctatttcaatacattgcaccccctccctgtgacaacgagagaacgacatcttgcgttcttggaatcacaaaaaaatattgctgtggaaaattcgcttatgtctgaatggcttcacgctccaggttatcaacattctcttgttgcattgcctcaggaggggatgaggCATACTGCTGTTGGCGTAGGA-G-----------G------GT------------GTCAA----ACGATGTAT-AA-A-A--AT-CGCTAA--ACG----A-CGCTGTTCCTGATCATGTG-G-TAT-T-T-TGGTAT--GAGGGTAACATCACACTCA----TCATTTGTT---------A-TTACTCA-TTTATta
gi|7 : CCTCC-TACG---CCAACAGCAG----------------T--------------ATGG------A--TACAATGTATGGCTGAAAATA------ATGGTGTGGAATATT-GACCCATGT-C-TGAATCACGTCACGCTTCAGTTGACCAACAGTCAGTgatacaatgtatggctgaaaataatggtgtggaatattgacccatgtctgaatcacgtcacgcttcagttgaccaacagtcagtattcagtttaattaaatgggatattctattg
gi|8 : ataaatgagtaataacaaatgatgagtgtgatgttaccctcataccaaaataccacatgatcaggaacagcgtcgtttagcgatttttatacatcgtttgacacTCAT----GTGAGGTAT-TG-AGA-TAT-T-ATAT--AT-----A-TGCT--TA-----TTTGTGTA-T-T-T-T-TGTTAT--GAAGGTGACATTT-ATTAA----TCAAGTGTTattcagtttaattaaatgggatattctattg
gi|8 : atgtaatcaaaattatatttttcaattgtaataagaaaCA-TTTATT---AATCAA-G-TGT-T-C-TGAGAACGTC-TCT-C-AT-AGAATGTTTTAAA----GT-A--TG-TT-TTAATATTTATA---GGATG--C----GT---TT----GTTTG-TTTGCTTGCAA--TG-TAAAA-AGGAA----------CCGA-TGGGCGGTTCG-GTATGTctgagaacgtctctcatagaatgttttaaagtatgttttaatatttataggatgcgtttgtttgtttgcttgcaatgtaaaaaggaaccgatgggcggttcggtatgttgttca
gi|9 : atgtaatcaaaattatatttttcaattgtaataagaaatcatgtgaggtattgagatattatatatatgcttatttgtgtatttttgttatgaaggtgaTGAAATTA-A---A----TCAAT-GTTGCTA-TT------------TCCATTCTCAACGAA-A-T-T-TAT-TGAGATCATA-TCATATAT-AGAATGTATTA-------------------TAATATTGATC---ACATG--CAATTG----TT----G---G-TT-GCTTCCAA--TG-TAAAA-A-ATA----------CATG-TGGCCGGTTGG-GAAtgttca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATACAGTAATTGTTTGTACTTGTATACTACAGTTTTAGAAACTCGCCACAAACAAACA
Unaligned ( gi|21 ): TCAGTTAGCGTTGTTAATGTGGTGCTGTTGCCATGTACACGAAAATCTTTTAACCATG
Unaligned ( gi|22 ): TATTACTATATCAGTTTACCCTGTATATCCGAGCATACGACATACA
Unaligned ( gi|23 ): ATATATTTGTAATAAAATGAACAAACAAAAATTAAACGA
Alignments
lowQualScore : 11 111 111 6666666666666666666666666 111 9999999999999999999999999999999999999999999 111111 777777777777777777777777777777 33333333333333333333 11111 2222222222222 1111111 111111111111 2222222222
lowQualScore : 1 1 88 6 999 555 4444444444444444444444444 7 6 1 111 3333333333333333333333333333333333333333333 6 0 000000 0 3 3 3 2 4 222222222222222222222222222222 8888 4 4 4 33333333333333333333 5 3 11111 3 3 3 44 2 6666 6666666666666 2 3 6 6 9 6 3 3 3 3 33 1 6666666 55 3 3 666 444444444444 8888 777 4 55 4 1 4 4 1111111111 4 4
lowQualScore : . . .. . ... ... ......................... . . . ... ........................................... . . ...... . . . . . . .............................. .... . . . .................... . . ..... . . . .. . .... ............. . . . . . . . . . . .. . ....... .. . . ... ............ .... ... . .. . . . . .......... . .
lowQualScore : 0 0 55 7 333 000 2222222222222222222222222 0 7 7 777 4444444444444444444444444444444444444444444 6 5 555555 7 3 3 3 6 4 222222222222222222222222222222 5555 0 0 4 66666666666666666666 0 7 44444 6 6 6 66 9 1111 7777777777777 9 1 2 2 2 2 1 1 1 1 22 0 5555555 00 6 6 444 000000000000 5555 000 0 55 0 1 0 0 5555555555 0 0
consensus : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACAACAACAG----------------C--------------TCGG------AAACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTT---------G-T----GT------------GTCAT----ACGAGGTAT-TG-A-A-TAT-C-TTAA--AC-----A-CGCTGTTACTGATTTTGTG-A-T-T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
Reference ( family-1077 ) : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACAACAACAG----------------C--------------TCGG------AAACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTT---------G-T----GT------------GTCAT----ACGAGGTAT-TG-A-A-TAT-C-TTAA--AC-----A-CGCTGTTACTGATTTTGTG-A-T-T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
gi|1 : ACAATTCCTATTATTACATTA-TCAGT---TTAA--GAACA----------TTT---G------CAACTCTTTC-TGTG---ACAACAACAG----------------TACGACACTTCGCCTTCGT------GGACACAATGTATCACTG------------------TGGAACCTG-CGCACGTAT-C-TGAATCACGTCACGTTCCAGTTGGCTA-CATTCTGTTGTTGGGGTAGCT-GTT---------G-T-----T------------GCCAT----GCGAGGTAT-CG-A-AATAG-C-TGAACGACTG---A-CGCCGTTACTGATTGTGTG-A-C-TGT-T-TAATTT--AAGGGTGTCATTA-TTTAA----TCAATTAGAAAGA-TTTAA-CTACTCG-CTCATCTTCAATGAA-A-T-A-T-T-TGAGAACATC-TCA-A-GT-AAAATGTTTTAAA----A--A--TG-TT-ATAATATTGATA---ACATG--C----A-----T----G---G-TTTGCTTCCAA--TG-CAAAA-C-AAAT---------CAGG-TGGCCGGTTAG-AA
gi|10 : aTAT--CAGGGTGACATTA-ATAAA----TCAGTTGTTACAA-TTTAA-CTTTATG-TTTATGTCCAATGGA-A-T-T-TTC-TGAGAACATC-TCA-A-AC-TGAACGTTTTAAA----GG-A--TG-AT-TTGATGT----------GTT--T----G----TT----G---G-TTTGTTTGCAA--TGTTTAAT-A-ATA----------CTGG-TGGTCGGTTTG-AAATtttcagcgtattttacattgaaatatgttttagtgtaacagtatgtagaagcataatcaaatacaa
gi|11 : tgcatgaaaaacatattttatacaatttataaccaagtgttggccaggtgttctactatgaacaaATTA-ATTAA----CCAATTGTTGTGT-TT-T--CAACTCG-TTTATTTTCAATGATTA-T-T-T-T-TGGGAATATT-GCA-A-AC-AGGATGTATTAAC----ACGA--TG-CT-TTGATATTGATA---AGATG--C----G----TT----G---A-TTTCCATCCAA--TG-TAAAA-A-AAAAAAAAGAGAGCAGG-TGGCCGACTAGAAAATGT
gi|12 : ttgCTGAAGATATGCCTGCTGCTGTGGAA-ATTATACCCATGT-C-TGAATCACGTCACACTCAAGTTGAACAACATTCTGTTGTTGGGG-AGCTGGTT---------GTT----GT------------GTCACGGGAACGGGTTATGCG-A-AGTGTAC-TTAC--CC-----A-GGGTGTTCCCGAGTTAATG-C-C-T-T-TATGCTAT--G-GGGTAACATTT-ATCAA----CTAATTGTTAC----T-AA-----TCG-ATTATTTTCAATtttgttcaatgtacataatgtatataaccttttccagttttattactttatt
gi|13 : TTGCTTATTTTGCG-A-TGT-T-T-TATTAT--AACGGTGACATTA-ATTAACTAATCAATAGTTAC-A-TT-AA-----------------------A-A-T-TGT-C-TAAGAAAATC-TCA-A-AT-AGAATGAATTAAA----A--AGCTG-TT-TTAATATTTATA---GGATG--C----GTTTATT----G---G-TTTACTTCCAA--TG-T--AA-A-AAG----------CAGG-TGAAAAGTTAG-AAATGtcaa
gi|14 : GG------AAACA--ATGTAT-GATAGAAATA------CTACTTTGGAATATC-CTTCCATGT-C-TGAATAACGTCACGTTCCGGTAAACCAACATTTTGTTGATGCGGTAGCT-GTT---------G-TTGCCGTAGAAATGG----GGCCT----ACGAGGTAT-TG-A-ACTAG-C-TTAA--ctgtccggtgtat
gi|15 : ttacaataatcattctcacgatatctcgccttaatTTTTTTA-C-T-T-T-T-TGCTAT--GAGGGCGACATTA-ATAAA----CCACTTATTACAA-AT-A-------TG-TTTATTTTCGGTGAC-ATT-T-T-C-TGAAAACATC-TCA-A-A--AG-CTGTTTTAAT----AT-
gi|16 : TGTGGAAAAAT-CATCCATGT-TGTGACTCCCGCCAC--TCCAGTTGCTCAACATTTTGATGTTGGAGTAGTG-GTTTCAGCAAGAA-T----GG------------GTCAT----AAGAGGCAT-TG-aataagt
gi|17 : CC-TGTGGCAACAACAACAT----------------C--------------TCGACCTCATGAACACAATGTATCACTGAAGATA------TTGCTGTGGAATATA-CGCCAACAT-C-TTAATt
gi|18 : ACACAATGTATCGGTGGCAATA------CTGGTGTGTAGTATT-TGTCTA-ATAC-TGAATCAGGTCACACTCAAATTGA
gi|19 : tTTCTCAATGAA-A-T-TCT-C-TGATATCATC-TCA-A-AT-ATAATTTATTAAA----AT-A--TG-TT-TTAGTATGCATA---AGATG--aaa
gi|2 : gtt----ACGAGGTAC-TGCA-A-TA-------A--ACGAACAA-CACCGTTACTGCTTTGGCG-A-CAT-T-T-TGTTAT--GAGGGTTGCATCT-TTTAA----TCATTTGTAACGAGTT-AT-CTACTCG-CTAATTTCCATTTAA-A-T-TGT-A-TGAGAACATC-TCA-A-AT-AGAATGTGTCAAA----AG-A--TG-TC-TTAATATTGATA---AGATC--T----G----TCCATAG---A-TTTGCTGCAAA--TT-TTAAA-A-AAA----------GACA-T--CCGTTTAG-AAAT
gi|2 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataGTATCGTTGAAGATA------CTGCTGCAGAATATC-CATCCATGT-C-GGAATCAGGTCACGCTCCCGTTGACCAGTATTATGTTGATGGGTTAGCT-ATT---------G-T----taagccatctcaccattacggtatcgttgaagatactgctgcagaatatccatccatgtcggaatcaggtcacgctcccgttgaccagtattatgttgatgggttagctattgttgacgcatcagtgactagttgtcatat
gi|3 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataatttctaaacggatgtctttttttaaaatttgcagcaaatctatggacagatcttatcaatattaagacatcttttgacacattctatttgagatgttctcatacaatttaaatggaaattagcgagtagataactcgttacaaatgattaaaagatgcaaccctcataacaaaatgtcgccaaagcagtaacggtgttgttcgtttattgcagtacctcgttaagccatctcaccattacgAT----ACGAGGAAC-TG-A-AATAA-C-TGAA--CA-----A-CACTATTGCT-ATTTTCTG-A-C-T-TAT-TGTTAC--GAGGGTGGCATTA-ATTGA----TCTA-TGTCACGA-TG-AA-A-ATTC--TCT-TTTTCAATTAC-T-TAT-T-C-TAATAACATCATC--A-AT-ATAATGTATTAAA----AG-A--TGATT-TAAATATCGACA---TG-TGTTT----G----TT----G---G-TTTATTCCCAAATTG-AAAAA-A-AAG----------CAAGCTGACCGGTTAA-AAATtgacgcatcagtgactagttgtcatat
gi|3 : gtattacatacactaaacataATTGCTCCGTCCCTTGAC--AACAAC------AATAC---GACCATCCAAC-CCTCG-TG-G---ACAA-------------------------------------------------ACACAATGTATTGATGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TAAATCACGTCACAATCCGGTTGACCAATATTCTGTTGTTGGGGTGGCT-GTT---------G-T----TTCCGCAGGACATGGTCAT----AT-AGGTAT-TC-A-A-tgctccgtcccttgacaacaacaatacgaccatccaaccctcgtggacaaacacaatgtattgatgaagatactgctgtggaatattcgcccatgtctaaatcacgtcacaatccggttgaccaatattctgttgttggggtggctgttgtttccgcaggacatggtcatataggtattcaagaaagttta
gi|4 : gtattacatacactaaacataatttttaaccggtcagcttgcttttttttcaatttgggaataaaccaacaaacacatgtcgatatttaaatcatcttttaatacattatattgatgatgttattagaataagtaattgaaaaagagaattttcatcgtgacatagatcaattaatgccaccctcgtaacaataagtcagaaaatagcaatagtgttgttcagttatttcagttcctcgtA--AC-----AACGCTGTTACTGATATTATG-ACT-T-T-T-TGTTAG--GAGGCTGACATTA-TTTAA----TGAACTGTTTTGA-TT-AAACTACTCG-TTT-TTTTCTATGAT-A-T-T-T-TATGAAAACATC-TCA-A-AG-AGAATGTTTTAAATGTCTT-A--TA-TT-TTAACATTGATATTTATATA--T----G----TC----G---GATTTGTTTCCGA--TC-TAAAA-A-GGA----------CAAG-TAGCAGGTTAG-AAATGTgaaagttta
gi|4 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatACACAATGAAT-GCTGATGCTG------ATGCT----ACTATT-CGATTATGT-C-TGAATCACGTCACATTCCAGTTGACCAATATTCTGTCGTTGGGGTAGCT-actgcacgacatcacaccctcatggacacaatgaatgctgatgctgatgctactattcgattatgtctgaatcacgtcacattccagttgaccaatattctgtcgttggggtagct
gi|5 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatacatttctaacctgctacttgtcctttttagatcggaaacaaatccgacatatataaatatcaatgttaaaatataagacatttaaaacattctctttgagatgttttcataaaatatcatagaaaaaaacgagtagtttaatcaaaacagttcattaaataatgtcagcctcctaacaaaaagtcataatatcagtaacagcgttgttactgcacgacatcacaccctcatggACAATCACGATT--TACAATACTCCGTTTTTTGACCGAAC--T------AATAT---G-------AATTCCTCC-TGTG---ACAACAACAG----------------C--------------TCGG------AAACGCAATGCATCTCTGAAGATA------CTGCTGCGGAATATT-CACCCATAC-C-TGAATCACTTAGCTCTACAATTGACCAACATTATGTTGTTGGGGTAGCT-GTT---------G-T----AT------------GTCAT----ACGAAGTAT-TG-C-A-TAT-T-TTAA--AC-----A-CGCTGTTAGTGATTTTGTG-A-T-T-T-T-TACTAT--GAGGGTGACATCA-AATAA----TCAATTGTTACTA-TTCAC-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TGA-A-GT-AAAATGTATTAAA----AT-A--TA-TTGTTAATATTGATA---AGATG--C----G----TT----G---G-TTTGTT----G--TG-TAGAATA-AAA----------CAGG-CGGCCGGTTAG-AAATGT
gi|6 : C-GAACAGCTATTTCAATACATTG------CACCCCCTCCCTGTG---ACAACGAGAGAACGACATCTTGCGTTC--------------TTGG------AATCACAA---------AAAAATA------TTGCTGTGGAAAATT-CGCTTATGT-C-TGAATGGCTTCACGCTCCAGGTTATCAACATTCTCTTGTTG
gi|6 : aagttacacaatcagttactgcatGTT-CTGATTTTGTG-A-T-G-T-T-TTTTAAAAGAGGGTGACATTT-ATTTT----TCAATTGATACGATTT-AA-CTTCTTGATTTAATTTCAATGGA-ATT-T-T-C-TGATTACATC-TCA-A-GCAAAAATGTTTTcattgcctcaggaggggatgagggttctgattttgtgatgttttttaaaagagggtgacatttatttttcaattgatacgatttaacttcttgatttaatttcaatggaattttctgattacatctcaagcaaaaatgttttta
gi|7 : aagttacacaatcagttactgcatcgaacagctatttcaatacattgcaccccctccctgtgacaacgagagaacgacatcttgcgttcttggaatcacaaaaaaatattgctgtggaaaattcgcttatgtctgaatggcttcacgctccaggttatcaacattctcttgttgcattgcctcaggaggggatgaggCATACTGCTGTTGGCGTAGGA-G-----------G------GT------------GTCAA----ACGATGTAT-AA-A-A--AT-CGCTAA--ACG----A-CGCTGTTCCTGATCATGTG-G-TAT-T-T-TGGTAT--GAGGGTAACATCACACTCA----TCATTTGTT---------A-TTACTCA-TTTATta
gi|7 : CCTCC-TACG---CCAACAGCAG----------------T--------------ATGG------A--TACAATGTATGGCTGAAAATA------ATGGTGTGGAATATT-GACCCATGT-C-TGAATCACGTCACGCTTCAGTTGACCAACAGTCAGTgatacaatgtatggctgaaaataatggtgtggaatattgacccatgtctgaatcacgtcacgcttcagttgaccaacagtcagtattcagtttaattaaatgggatattctattg
gi|8 : ataaatgagtaataacaaatgatgagtgtgatgttaccctcataccaaaataccacatgatcaggaacagcgtcgtttagcgatttttatacatcgtttgacacTCAT----GTGAGGTAT-TG-AGA-TAT-T-ATAT--AT-----A-TGCT--TA-----TTTGTGTA-T-T-T-T-TGTTAT--GAAGGTGACATTT-ATTAA----TCAAGTGTTattcagtttaattaaatgggatattctattg
gi|8 : atgtaatcaaaattatatttttcaattgtaataagaaaCA-TTTATT---AATCAA-G-TGT-T-C-TGAGAACGTC-TCT-C-AT-AGAATGTTTTAAA----GT-A--TG-TT-TTAATATTTATA---GGATG--C----GT---TT----GTTTG-TTTGCTTGCAA--TG-TAAAA-AGGAA----------CCGA-TGGGCGGTTCG-GTATGTctgagaacgtctctcatagaatgttttaaagtatgttttaatatttataggatgcgtttgtttgtttgcttgcaatgtaaaaaggaaccgatgggcggttcggtatgttgttca
gi|9 : atgtaatcaaaattatatttttcaattgtaataagaaatcatgtgaggtattgagatattatatatatgcttatttgtgtatttttgttatgaaggtgaTGAAATTA-A---A----TCAAT-GTTGCTA-TT------------TCCATTCTCAACGAA-A-T-T-TAT-TGAGATCATA-TCATATAT-AGAATGTATTA-------------------TAATATTGATC---ACATG--CAATTG----TT----G---G-TT-GCTTCCAA--TG-TAAAA-A-ATA----------CATG-TGGCCGGTTGG-GAAtgttca
blockSeqs : A G . C CCC CCG AGCTATTTCAATACATTGC T C T GCA AACGACATCTTGCGTTCTTGGAA C TGCCTG A A G A G GTTGCCGTAGAAATGG GGGA G C G GTGTACTTACCC A C ATG . A A AA C CTAA AATTTAACTTT A T T A G T A A T T CA T TGTCTT GC A G TTT CGTTTA CATA TTT A AT T T T G AAAAAGAGAG C A
blockSeqs : C TTT CG AACAATACGACCATCC C . T . CTCGACCTCATGA C . . . . G . GTTTCCGCAGGACATG . . . . ATAACTGAACA . G ACA . . . . . . GAGTTATCTAC . . T G C A . . . . C A ACG . . . . CAATTG . . . . . A . . . . .
blockSeqs : C TAATATG . . T . CTCGGAA C . . . . A . TCAGCAAGAATGG . . . . ATCGCTAAACG . A ACT . . . . . . GATTAAACTAC . . . . G . . . . . C A GG . . . . TTTG . . . . . T . . . . .
blockSeqs : . C . TATGGA T . . . . G . GTTGT . . . . TAAACGAACA . G GTA . . . . . . TATTCACCTAC . . . . . . . . . . T T AT . . . . CGT . . . . . A . . . . .
blockSeqs : . . . . C . . . . A . GTAT . . . . TATTTTAAAC . A TAT . . . . . . GATTTAACTTC . . . . . . . . . . T A AT . . . . TG . . . . . A . . . . .
blockSeqs : G . . . . A . GGT . . . . TATTATATAT . A CC . . . . . . GTTTTCAAC . . . . . . . . . . T G AG . . . . CG . . . . . A . . . . .
blockSeqs : . . . . . T . . . . . . C CT . . . . . . GATGAAAAT . . . . . . . . . . T A AG . . . . TG . . . . . A . . . . .
blockSeqs : . . . . . G . . . . . A AC . . . . . . ATTAA . . . . . . . . . . G T AT . . . . TG . . . . . A . . . . .
blockSeqs : . . . . . G . . . . AT . . . . . . AAATA . . . . . . . . . . T A GT . . . . CG . . . . . . . . . . .
blockSeqs : . . . . . AT . . . . . . ATTAC . . . . . . . . . . T T A . . . .
blockSeqs : . . . . . . TATT . . . . . . . . . . T T .
blockSeqs : . . TAA . . . . . . . . . . . A
blockSeqs : . . .
blockSeqCons : CTCGGGA************************************ GTTCGCAGAATG****************** TAACTNAACN********** AT*** AT***** **********
originalCons : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACAACAACAG----------------C--------------TCGG------AAACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTT---------G-T----GT------------GTCAT----ACGAGGTAT-TG-A-A-TAT-C-TTAA--AC-----A-CGCTGTTACTGATTTTGTG-A-T-T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
finalCons : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACAACAACAGCTCGGGA------------------------------------ACACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGGGGTAGCT-GTTGTTCGCAGAATG------------------GTCAT----ACGAGGTAT-TG-A-ATAACTNAACN----------A-CGCTGTTACTGATTTTGTGAT---T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAAAT-----A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATACAGTAATTGTTTGTACTTGTATACTACAGTTTTAGAAACTCGCCACAAACAAACA
Unaligned ( gi|21 ): TCAGTTAGCGTTGTTAATGTGGTGCTGTTGCCATGTACACGAAAATCTTTTAACCATG
Unaligned ( gi|22 ): TATTACTATATCAGTTTACCCTGTATATCCGAGCATACGACATACA
Unaligned ( gi|23 ): ATATATTTGTAATAAAATGAACAAACAAAAATTAAACGA
Alignments
lowQualScore : 11 111 111 6666666666666666666666666 111 88888888888888888888888888888888888888888888 111111 666666666666666666666666666 1 1111 11111 2222222222222 1111111 111111111111 2222222222
lowQualScore : 1 1 88 6 999 555 4444444444444444444444444 7 6 1 000 77 00000000000000000000000000000000000000000000 4 6 0 000000 0 3 3 3 2 66 777 55 222222222222222222222222222 444 7 4 1 4 66 0000 0 3 11111 3 3 3 44 2 6666 6666666666666 2 3 6 6 9 6 3 3 3 3 33 1 6666666 55 3 3 666 444444444444 8888 777 4 55 4 1 4 4 1111111111 4 4
lowQualScore : . . .. . ... ... ......................... . . . ... .. ............................................ . . . ...... . . . . . .. ... .. ........................... ... . . . . .. .... . . ..... . . . .. . .... ............. . . . . . . . . . . .. . ....... .. . . ... ............ .... ... . .. . . . . .......... . .
lowQualScore : 0 0 55 7 333 000 2222222222222222222222222 0 7 7 000 99 88888888888888888888888888888888888888888888 4 6 5 555555 7 3 3 3 6 11 888 55 666666666666666666666666666 888 8 3 0 4 00 6666 9 7 44444 6 6 6 66 9 1111 7777777777777 9 1 2 2 2 2 1 1 1 1 22 0 5555555 00 6 6 444 000000000000 5555 000 0 55 0 1 0 0 5555555555 0 0
consensus : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACA--ACAACAG--------C--------------TCG-------G------GAA-CACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGG--GG---TAGC--TGTTGT-T--C-GC-A--G-G--AC-GG--T--CATACGAGGTATTG-A-A-TAGCTNA-AC-GAC----GCTGTTACTGATTTTGTG-A-T-T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
Reference ( family-1077 ) : ACAATCNCNATTATTACATTACTCCGTCCCTTGAC-GAACAGC------AATAC---G------CAACTCCTCC-TGTG---ACA--ACAACAG--------C--------------TCG-------G------GAA-CACAATGTATCGCTGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TGAATCACGTCACGCTCCAGTTGACCAACATTCTGTTGTTGG--GG---TAGC--TGTTGT-T--C-GC-A--G-A--AT-GG--T--CATACGAGGTATTG-A-A-TAACTNA-AC-NAC----GCTGTTACTGATTTTGTG-A-T-T-T-T-TGTTAT--GAGGGTGACATTA-ATTAA----TCAATTGTTACGA-TT-AA-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TCA-A-AT-AGAATGTNTTAAA----AT-A--TG-TT-TTAATATTGATA---AGATG--C----G----TT----G---G-TTTGCTTCCAA--TG-TAAAA-A-AAA----------CAGG-TGGCCGGTTAG-AAATGT
gi|1 : ACAATTCCTATTATTACATTA-TCAGT---TTAA--GAACA----------TTT---G------CAACTCTTTC-TGTG---ACA--ACAACAG--------TACGACACTTCGCCTTCG-------T------GGA-CACAATGTATCACTG------------------TGGAACCTG-CGCACGTAT-C-TGAATCACGTCACGTTCCAGTTGGCTA-CATTCTGTTGTTGG--GG---TAGC--TGTTGT-T-------------------G--C--CATGCGAGGTATCG-A-AATAGCTGA-AC-GACTGACGCCGTTACTGATTGTGTG-A-C-TGT-T-TAATTT--AAGGGTGTCATTA-TTTAA----TCAATTAGAAAGA-TTTAA-CTACTCG-CTCATCTTCAATGAA-A-T-A-T-T-TGAGAACATC-TCA-A-GT-AAAATGTTTTAAA----A--A--TG-TT-ATAATATTGATA---ACATG--C----A-----T----G---G-TTTGCTTCCAA--TG-CAAAA-C-AAAT---------CAGG-TGGCCGGTTAG-AA
gi|10 : aTAT--CAGGGTGACATTA-ATAAA----TCAGTTGTTACAA-TTTAA-CTTTATG-TTTATGTCCAATGGA-A-T-T-TTC-TGAGAACATC-TCA-A-AC-TGAACGTTTTAAA----GG-A--TG-AT-TTGATGT----------GTT--T----G----TT----G---G-TTTGTTTGCAA--TGTTTAAT-A-ATA----------CTGG-TGGTCGGTTTG-AAATtttcagcgtattttacattgaaatatgttttagtgtaacagtatgtagaagcataatcaaatacaa
gi|11 : tgcatgaaaaacatattttatacaatttataaccaagtgttggccaggtgttctactatgaacaaATTA-ATTAA----CCAATTGTTGTGT-TT-T--CAACTCG-TTTATTTTCAATGATTA-T-T-T-T-TGGGAATATT-GCA-A-AC-AGGATGTATTAAC----ACGA--TG-CT-TTGATATTGATA---AGATG--C----G----TT----G---A-TTTCCATCCAA--TG-TAAAA-A-AAAAAAAAGAGAGCAGG-TGGCCGACTAGAAAATGT
gi|12 : ttgCTGAAGATATGCCTGCTGCTGTGGAA-ATTATACCCATGT-C-TGAATCACGTCACACTCAAGTTGAACAACATTCTGTTGTTGG--GGAGCTGGT--TGTTGTGT--C-ACGG--G-A--ACGGG--T--TATGCGAAGTGT---------ACTTA-CC-CAG----GGTGTTCCCGAGTTAATG-C-C-T-T-TATGCTAT--G-GGGTAACATTT-ATCAA----CTAATTGTTAC----T-AA-----TCG-ATTATTTTCAATtttgttcaatgtacataatgtatataaccttttccagttttattactttatt
gi|13 : TTGCTTATTTTGCG-A-TGT-T-T-TATTAT--AACGGTGACATTA-ATTAACTAATCAATAGTTAC-A-TT-AA-----------------------A-A-T-TGT-C-TAAGAAAATC-TCA-A-AT-AGAATGAATTAAA----A--AGCTG-TT-TTAATATTTATA---GGATG--C----GTTTATT----G---G-TTTACTTCCAA--TG-T--AA-A-AAG----------CAGG-TGAAAAGTTAG-AAATGtcaa
gi|14 : -------G------GAA--ACAATGTAT-GATAGAAATA------CTACTTTGGAATATC-CTTCCATGT-C-TGAATAACGTCACGTTCCGGTAAACCAACATTTTGTTGATGC--GG---TAGC--TGTTGT-TGCC-GT-A--GAA--ATGGG--G--CCTACGAGGTATTG-A-ACTAGCTTA-Actgtccggtgtat
gi|15 : ttacaataatcattctcacgatatctcgccttaatTTTTTTA-C-T-T-T-T-TGCTAT--GAGGGCGACATTA-ATAAA----CCACTTATTACAA-AT-A-------TG-TTTATTTTCGGTGAC-ATT-T-T-C-TGAAAACATC-TCA-A-A--AG-CTGTTTTAAT----AT-
gi|16 : TGTGGAAAAAT-CATCCATGT-TGTGACTCCCGCCAC--TCCAGTTGCTCAACATTTTGATGTTGG--AG---TAGT--GGT--T-T--CAGCAA--G-A--ATGGG--T--CATAAGAGGCATTG-aataagt
gi|17 : CC-TGTGGCAACA--ACAACAT--------C--------------TCG-------ACCTCATGAA-CACAATGTATCACTGAAGATA------TTGCTGTGGAATATA-CGCCAACAT-C-TTAATt
gi|18 : A-CACAATGTATCGGTGGCAATA------CTGGTGTGTAGTATT-TGTCTA-ATAC-TGAATCAGGTCACACTCAAATTGA
gi|19 : tTTCTCAATGAA-A-T-TCT-C-TGATATCATC-TCA-A-AT-ATAATTTATTAAA----AT-A--TG-TT-TTAGTATGCATA---AGATG--aaa
gi|2 : gttACGAGGTACTGCA-A-TAAACGA-AC-AAC----ACCGTTACTGCTTTGGCG-A-CAT-T-T-TGTTAT--GAGGGTTGCATCT-TTTAA----TCATTTGTAACGAGTT-AT-CTACTCG-CTAATTTCCATTTAA-A-T-TGT-A-TGAGAACATC-TCA-A-AT-AGAATGTGTCAAA----AG-A--TG-TC-TTAATATTGATA---AGATC--T----G----TCCATAG---A-TTTGCTGCAAA--TT-TTAAA-A-AAA----------GACA-T--CCGTTTAG-AAAT
gi|2 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataGTATCGTTGAAGATA------CTGCTGCAGAATATC-CATCCATGT-C-GGAATCAGGTCACGCTCCCGTTGACCAGTATTATGTTGATGG--GT---TAGC--TATTGT-TGAC-GC-A--taagccatctcaccattacggtatcgttgaagatactgctgcagaatatccatccatgtcggaatcaggtcacgctcccgttgaccagtattatgttgatgggttagctattgttgacgcatcagtgactagttgtcatat
gi|3 : taacaaagatcaatcaaataaaaggatactattatatatttttatcatgtaattatacattaacggaacataatttctaaacggatgtctttttttaaaatttgcagcaaatctatggacagatcttatcaatattaagacatcttttgacacattctatttgagatgttctcatacaatttaaatggaaattagcgagtagataactcgttacaaatgattaaaagatgcaaccctcataacaaaatgtcgccaaagcagtaacggtgttgttcgtttattgcagtacctcgttaagccatctcaccattacgGTTGGATGG---TCGTATTGTTGT-T--G-TC-AAGG-G--AC-GGAGC--AATACGAGGAACTG-A-AATAACTGA-AC-AAC----ACTATTGCT-ATTTTCTG-A-C-T-TAT-TGTTAC--GAGGGTGGCATTA-ATTGA----TCTA-TGTCACGA-TG-AA-A-ATTC--TCT-TTTTCAATTAC-T-TAT-T-C-TAATAACATCATC--A-AT-ATAATGTATTAAA----AG-A--TGATT-TAAATATCGACA---TG-TGTTT----G----TT----G---G-TTTATTCCCAAATTG-AAAAA-A-AAG----------CAAGCTGACCGGTTAA-AAATtcagtgactagttgtcatat
gi|3 : gtattacatacactaaacataATTGCTCCGTCCCTTGAC--AACAAC------AATAC---GACCATCCAAC-CCTCG-TG-G---ACA--A------------------------------------------------A-CACAATGTATTGATGAAGATA------CTGCTGTGGAATATT-CGCCCATGT-C-TAAATCACGTCACAATCCGGTTGACCAATATTCTGTTGTTGG--GG---TGGC--TGTTGT-TTCC-GC-A--G-GACAT-GG--T--CATAT-AGGTATTC-A-A-GAAcctcgtggacaaacacaatgtattgatgaagatactgctgtggaatattcgcccatgtctaaatcacgtcacaatccggttgaccaatattctgttgttggggtggctgttgtttccgcaggacatggtcatataggtattcaagaaagttta
gi|4 : gtattacatacactaaacataatttttaaccggtcagcttgcttttttttcaatttgggaataaaccaacaaacacatgtcgatatttaaatcatcttttaatacattatattgatgatgttattagaataagtaattgaaaaagagaattttcatcgtgacatagatcaattaatgccaccctcgtaacaataagtcagaaaatagcaatagtgttgttcagttatttcagttcctcgtA-AC-AAC----GCTGTTACTGATATTATG-ACT-T-T-T-TGTTAG--GAGGCTGACATTA-TTTAA----TGAACTGTTTTGA-TT-AAACTACTCG-TTT-TTTTCTATGAT-A-T-T-T-TATGAAAACATC-TCA-A-AG-AGAATGTTTTAAATGTCTT-A--TA-TT-TTAACATTGATATTTATATA--T----G----TC----G---GATTTGTTTCCGA--TC-TAAAA-A-GGA----------CAAG-TAGCAGGTTAG-AAATGTagttta
gi|4 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatG---ACATCACACC----------C--------------TCA-------T------GGA-CACAATGAAT-GCTGATGCTG------ATGCT----ACTATT-CGATTATGT-C-TGAATCACGTCACATTCCAGTTGACCAATATTCTGTCGTTGG--GG---TAGC--Tactgcacgacatcacaccctcatggacacaatgaatgctgatgctgatgctactattcgattatgtctgaatcacgtcacattccagttgaccaatattctgtcgttggggtagct
gi|5 : tttggaatatttgcatgacgaaagatatgtattcttatgtatttacacaagtatttcactgcaggacacgttttcaaatatacactgaatacatttctaacctgctacttgtcctttttagatcggaaacaaatccgacatatataaatatcaatgttaaaatataagacatttaaaacattctctttgagatgttttcataaaatatcatagaaaaaaacgagtagtttaatcaaaacagttcattaaataatgtcagcctcctaacaaaaagtcataatatcagtaacagcgttgttactgcacACAATCACGATT--TACAATACTCCGTTTTTTGACCGAAC--T------AATAT---G-------AATTCCTCC-TGTG---ACA--ACAACAG--------C--------------TCG-------G------AAA-CGCAATGCATCTCTGAAGATA------CTGCTGCGGAATATT-CACCCATAC-C-TGAATCACTTAGCTCTACAATTGACCAACATTATGTTGTTGG--GG---TAGC--TGTTGT-----------------AT--G--T--CATACGAAGTATTG-C-A-TATTTTA-AA-CAC----GCTGTTAGTGATTTTGTG-A-T-T-T-T-TACTAT--GAGGGTGACATCA-AATAA----TCAATTGTTACTA-TTCAC-CTACTCG-TTTATTTTCAATGAA-A-T-T-T-C-TGAGAACATC-TGA-A-GT-AAAATGTATTAAA----AT-A--TA-TTGTTAATATTGATA---AGATG--C----G----TT----G---G-TTTGTT----G--TG-TAGAATA-AAA----------CAGG-CGGCCGGTTAG-AAATGT
gi|6 : C-GAACAGCTATTTCAATACATTG------CACCCCCTCCCTGTG---ACA--ACGAGAGAACGACATC--------------TTGCGTTCTTG------GAATCACAA---------AAAAATA------TTGCTGTGGAAAATT-CGCTTATGT-C-TGAATGGCTTCACGCTCCAGGTTATCAACATTCTCTTGTTG
gi|6 : aagttacacaatcagttactgcatGTT-CTGATTTTGTG-A-T-G-T-T-TTTTAAAAGAGGGTGACATTT-ATTTT----TCAATTGATACGATTT-AA-CTTCTTGATTTAATTTCAATGGA-ATT-T-T-C-TGATTACATC-TCA-A-GCAAAAATGTTTTcattgcctcaggaggggatgagggttctgattttgtgatgttttttaaaagagggtgacatttatttttcaattgatacgatttaacttcttgatttaatttcaatggaattttctgattacatctcaagcaaaaatgttttta
gi|7 : aagttacacaatcagttactgcatcgaacagctatttcaatacattgcaccccctccctgtgacaacgagagaacgacatcttgcgttcttggaatcacaaaaaaatattgctgtggaaaattcgcttatgtctgaatggcttcacgctccaggttatcaacattctcttgttgcattgcctcaggaggggatgaggC--TGCTGT-TGGC-GT-A--G-G--AG-GG--TGTCAAACGATGTATAA-A-AATCGCTAA-AC-GAC----GCTGTTCCTGATCATGTG-G-TAT-T-T-TGGTAT--GAGGGTAACATCACACTCA----TCATTTGTT---------A-TTACTCA-TTTATta
gi|7 : CCTCC-TACG---CCA--ACAGCAG--------T--------------ATG-------G--------A-TACAATGTATGGCTGAAAATA------ATGGTGTGGAATATT-GACCCATGT-C-TGAATCACGTCACGCTTCAGTTGACCAACAGTCAGTtatggatacaatgtatggctgaaaataatggtgtggaatattgacccatgtctgaatcacgtcacgcttcagttgaccaacagtcagtattcagtttaattaaatgggatattctattg
gi|8 : ataaatgagtaataacaaatgatgagtgtgatgttaccctcataccaaaataccacatgatcaggaacagcgtcgtttagcgatttttatacatcgtttgacac-A--G-A--A---A--T--CATGTGAGGTATTG-AGA-TA--TTATATATAT----GC--TTA-----TTTGTGTA-T-T-T-T-TGTTAT--GAAGGTGACATTT-ATTAA----TCAAGTGTTattcagtttaattaaatgggatattctattg
gi|8 : atgtaatcaaaattatatttttcaattgtaataCA-TTTATT---AATCAA-G-TGT-T-C-TGAGAACGTC-TCT-C-AT-AGAATGTTTTAAA----GT-A--TG-TT-TTAATATTTATA---GGATG--C----GT---TT----GTTTG-TTTGCTTGCAA--TG-TAAAA-AGGAA----------CCGA-TGGGCGGTTCG-GTATGTctgagaacgtctctcatagaatgttttaaagtatgttttaatatttataggatgcgtttgtttgtttgcttgcaatgtaaaaaggaaccgatgggcggttcggtatgttgttca
gi|9 : atgtaatcaaaattatatttttcaattgtaataagaaatcatgtgaggtattgagatattatatatatgcttatttgtgtatttttgttatgaaggtgaTGAAATTA-A---A----TCAAT-GTTGCTA-TT------------TCCATTCTCAACGAA-A-T-T-TAT-TGAGATCATA-TCATATAT-AGAATGTATTA-------------------TAATATTGATC---ACATG--CAATTG----TT----G---G-TT-GCTTCCAA--TG-TAAAA-A-ATA----------CATG-TGGCCGGTTGG-GAAtgttca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATACAGTAATTGTTTGTACTTGTATACTACAGTTTTAGAAACTCGCCACAAACAAACA
Unaligned ( gi|21 ): TCAGTTAGCGTTGTTAATGTGGTGCTGTTGCCATGTACACGAAAATCTTTTAACCATG
Unaligned ( gi|22 ): TATTACTATATCAGTTTACCCTGTATATCCGAGCATACGACATACA
Unaligned ( gi|23 ): ATATATTTGTAATAAAATGAACAAACAAAAATTAAACGA