lowQualScore : 7 2 2 2 33 33 33 1
lowQualScore : . . . . .. .. .. .
lowQualScore : 5 5 5 5 44 22 22 4
consensus : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
Reference ( gi|10 ) : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCT
gi|9 : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGCAGCTAGCAACT--ATGTACAATTACCAAAACCAGCT
gi|2 : TCAATTTTT-T-ATTTTT-T-AT--ATGC--GTTGTGCTTTAGCTAGCAACT--ACGTACAATTACCAGAACCAGCTc
gi|3 : TCAACTTTTTT-ATTTTT-G-TT--ATGC--TTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCGGTTcgta
gi|1 : TCAACTTTT-T-ATTTTT-A-AA--ATGC--GTTGTGCTGTAGTTAGCCACT--ACGTACATTTACCAAAAACAGCTcg
gi|15 : TCAACTTTTTT-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCTcata
gi|16 : TCAACTTTTTT-ATTTTT-G-AT--GTGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCTcgt
gi|18 : TCAATTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACt
gi|4 : CAACTTTT-T-ATTTTT-G-AT--ATGC--GATGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCT
gi|6 : CAACTTTT-TTATTTTT-TTAT--ATGC--GTTGTACTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTcgta
gi|11 : CAACTT-----ATTTTT-G-AA--ATGC--GTTGTGCTGTAGCAAGCCACT--ACAAACAATTACC-AAACCAGCTc
gi|7 : AACTTTT-T-ATTTTT-G-AT--ATAC--GTTGTGCTGTAGCTAGCCACT--ATGTACTATTACCAAAACCAGCTtatg
gi|5 : AACTTTT-T-ATTTTT-T-AT--ATGC--GTTATACTGTAGCTAGCCACT--ATGTACAATTACCAGAACCAGCTcgta
gi|12 : AACTTTT-T-ATTTTT-G------------TTGTACTGTAGCTAGCCACA--ATGTACAATTACCAAAACCAGCTcgtat
gi|14 : tTTTT-T-TTTTTT-G-AT--ATTC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTcgta
gi|13 : TTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCAACT--AGGTACAATTACCAAAACCAGCT
gi|8 : TT-T-GTTTTTAG-ATGAAT-CAAGTT-TACTATAGC--GCCCCTCCATGTACAATTACCAAAACCAGCTc
gi|17 : aTGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTcgtat
gi|19 : TGCTGTATCTAGCCATT--ATGTACAACTACCAGAACC-GCTtgt
Alignments
lowQualScore : 7 2 2 2 33 33 33 1
lowQualScore : . . . . .. .. .. .
lowQualScore : 1 4 4 4 22 11 11 3
consensus : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
Reference ( family-1069 ) : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
gi|1 : TCAACTTTT-T-ATTTTT-A-AA--ATGC--GTTGTGCTGTAGTTAGCCACT--ACGTACATTTACCAAAAACAGCT
gi|10 : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCTcata
gi|11 : CAACTT-----ATTTTT-G-AA--ATGC--GTTGTGCTGTAGCAAGCCACT--ACAAACAATTACC-AAACCAGCT
gi|12 : AACTTTT-T-ATTTTT-G------------TTGTACTGTAGCTAGCCACA--ATGTACAATTACCAAAACCAGCTtatg
gi|13 : tTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCAACT--AGGTACAATTACCAAAACCAGCTcgta
gi|14 : TTTT-T-TTTTTT-G-AT--ATTC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTc
gi|15 : TCAACTTTTTT-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCT
gi|16 : TCAACTTTTTT-ATTTTT-G-AT--GTGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCTcgt
gi|17 : TGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTt
gi|18 : TCAATTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACtgt
gi|19 : TGCTGTATCTAGCCATT--ATGTACAACTACCAGAACC-GCT
gi|2 : TCAATTTTT-T-ATTTTT-T-AT--ATGC--GTTGTGCTTTAGCTAGCAACT--ACGTACAATTACCAGAACCAGCTagt
gi|3 : TCAACTTTTTT-ATTTTT-G-TT--ATGC--TTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCGGTTcgta
gi|4 : CAACTTTT-T-ATTTTT-G-AT--ATGC--GATGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCTcg
gi|5 : AACTTTT-T-ATTTTT-T-AT--ATGC--GTTATACTGTAGCTAGCCACT--ATGTACAATTACCAGAACCAGCTcgta
gi|6 : CAACTTTT-TTATTTTT-TTAT--ATGC--GTTGTACTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTcgtat
gi|7 : AACTTTT-T-ATTTTT-G-AT--ATAC--GTTGTGCTGTAGCTAGCCACT--ATGTACTATTACCAAAACCAGCTc
gi|8 : TT-T-GTTTTTAG-ATGAAT-CAAGTT-TACTATAGC--GCCCCTCCATGTACAATTACCAAAACCAGCTcgta
gi|9 : aTCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGCAGCTAGCAACT--ATGTACAATTACCAAAACCAGCTcgtat
Alignments
lowQualScore : 7 2 2 2 33 33 33 1
lowQualScore : . . . . .. .. .. .
lowQualScore : 1 4 4 4 22 11 11 3
consensus : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
Reference ( family-1069 ) : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
gi|1 : TCAACTTTT-T-ATTTTT-A-AA--ATGC--GTTGTGCTGTAGTTAGCCACT--ACGTACATTTACCAAAAACAGCT
gi|10 : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCTcata
gi|11 : CAACTT-----ATTTTT-G-AA--ATGC--GTTGTGCTGTAGCAAGCCACT--ACAAACAATTACC-AAACCAGCT
gi|12 : AACTTTT-T-ATTTTT-G------------TTGTACTGTAGCTAGCCACA--ATGTACAATTACCAAAACCAGCTtatg
gi|13 : tTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCAACT--AGGTACAATTACCAAAACCAGCTcgta
gi|14 : TTTT-T-TTTTTT-G-AT--ATTC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTc
gi|15 : TCAACTTTTTT-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCT
gi|16 : TCAACTTTTTT-ATTTTT-G-AT--GTGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCTcgt
gi|17 : TGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTt
gi|18 : TCAATTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACtgt
gi|19 : TGCTGTATCTAGCCATT--ATGTACAACTACCAGAACC-GCT
gi|2 : TCAATTTTT-T-ATTTTT-T-AT--ATGC--GTTGTGCTTTAGCTAGCAACT--ACGTACAATTACCAGAACCAGCTagt
gi|3 : TCAACTTTTTT-ATTTTT-G-TT--ATGC--TTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCGGTTcgta
gi|4 : CAACTTTT-T-ATTTTT-G-AT--ATGC--GATGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCTcg
gi|5 : AACTTTT-T-ATTTTT-T-AT--ATGC--GTTATACTGTAGCTAGCCACT--ATGTACAATTACCAGAACCAGCTcgta
gi|6 : CAACTTTT-TTATTTTT-TTAT--ATGC--GTTGTACTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTcgtat
gi|7 : AACTTTT-T-ATTTTT-G-AT--ATAC--GTTGTGCTGTAGCTAGCCACT--ATGTACTATTACCAAAACCAGCTc
gi|8 : TT-T-GTTTTTAG-ATGAAT-CAAGTT-TACTATAGC--GCCCCTCCATGTACAATTACCAAAACCAGCTcgta
gi|9 : aTCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGCAGCTAGCAACT--ATGTACAATTACCAAAACCAGCTcgtat
blockSeqs : T T A T GA AA CC T
blockSeqs : T . . . . . . C
blockSeqs : T . . . . . . T
blockSeqs : . . . . . . . G
blockSeqs : . . . . . . . C
blockSeqs : . . . . . . . C
blockSeqs : . . . . . . . T
blockSeqs : . . . . . . . C
blockSeqs : . . . . . . . C
blockSeqs : . . . . . . . T
blockSeqs : . . . . . . . T
blockSeqs : . . . . . . . C
blockSeqs : . . . . . . . T
blockSeqs : . . . . . . . T
blockSeqs : . . . . . . . T
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
finalCons : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
Alignments
lowQualScore : 7 2 2 2 33 33 33 1
lowQualScore : . . . . .. .. .. .
lowQualScore : 1 4 4 4 22 11 11 3
consensus : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
Reference ( family-1069 ) : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCT
gi|1 : TCAACTTTT-T-ATTTTT-A-AA--ATGC--GTTGTGCTGTAGTTAGCCACT--ACGTACATTTACCAAAAACAGCT
gi|10 : TCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCTcata
gi|11 : CAACTT-----ATTTTT-G-AA--ATGC--GTTGTGCTGTAGCAAGCCACT--ACAAACAATTACC-AAACCAGCT
gi|12 : AACTTTT-T-ATTTTT-G------------TTGTACTGTAGCTAGCCACA--ATGTACAATTACCAAAACCAGCTtatg
gi|13 : tTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCAACT--AGGTACAATTACCAAAACCAGCTcgta
gi|14 : TTTT-T-TTTTTT-G-AT--ATTC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTc
gi|15 : TCAACTTTTTT-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCT
gi|16 : TCAACTTTTTT-ATTTTT-G-AT--GTGC--GTTGTGCTGTAGCTAGC---------------TACCAAAACCAGCTcgt
gi|17 : TGC--GTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTt
gi|18 : TCAATTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGTAGCTAGCCACtgt
gi|19 : TGCTGTATCTAGCCATT--ATGTACAACTACCAGAACC-GCT
gi|2 : TCAATTTTT-T-ATTTTT-T-AT--ATGC--GTTGTGCTTTAGCTAGCAACT--ACGTACAATTACCAGAACCAGCTagt
gi|3 : TCAACTTTTTT-ATTTTT-G-TT--ATGC--TTTGTGCTGTAGCTAGCCACT--ACGTACAATTACCAAAACCGGTTcgta
gi|4 : CAACTTTT-T-ATTTTT-G-AT--ATGC--GATGTGCTGTAGCTAGCCACT--ATGTACAATTACCAAAACCAGCTcg
gi|5 : AACTTTT-T-ATTTTT-T-AT--ATGC--GTTATACTGTAGCTAGCCACT--ATGTACAATTACCAGAACCAGCTcgta
gi|6 : CAACTTTT-TTATTTTT-TTAT--ATGC--GTTGTACTGTAGCTAGCCACT--ACGTACAATTACCAAAACCAGCTcgtat
gi|7 : AACTTTT-T-ATTTTT-G-AT--ATAC--GTTGTGCTGTAGCTAGCCACT--ATGTACTATTACCAAAACCAGCTc
gi|8 : TT-T-GTTTTTAG-ATGAAT-CAAGTT-TACTATAGC--GCCCCTCCATGTACAATTACCAAAACCAGCTcgta
gi|9 : aTCAACTTTT-T-ATTTTT-G-AT--ATGC--GTTGTGCTGCAGCTAGCAACT--ATGTACAATTACCAAAACCAGCTcgtat