lowQualScore : 2222 1 111 111111 1 111111111 11
lowQualScore : 0000 3 7 888888 555 44 000000 2 2 1 33 2 6 33 33 44 333333333 77 2 33
lowQualScore : .... . . ...... ... .. ...... . . . .. . . .. .. .. ......... .. . ..
lowQualScore : 1111 6 1 888888 222 22 777777 4 4 3 22 4 8 22 22 22 777777777 99 7 77
consensus : ACCAGTGTTTTTTTNTTTG-GTTTTGGG------GGAA-T-GG--GG----G-CAGGTCCC-T-TCAA--TA-GGGGAAAA--T--AGCGT------CGTAATGACGAA-AA--TGGGA
Reference ( gi|17 ) : ACCAGTGTTTTTTTCTTTG-GTTATGGG------GGAA-A-GG--GG----A-CAGGTCCC-T-TCAA--TA-GGGTAAAA--T--AGCAT------CGCAATGACTAA-AA--TGGGA
gi|10 : ACTAGTATTTTTTGG---G-GTTTTAGG------GGAA-T-GT--AG----G-CAGGTCTC-T-TCCA--AA-GTGGAAAA--C--AGTAT------TGTATTAACAAA-AA--TGG
gi|19 : gaacatagtcactgatatcagagtttactgttCCAGTGTTTTTTT----G-GTTTTGGG------GGAA-T-AG--AG----G-CAAG-------TTGA--TA-GGGAAAGA--C---GTGT------TGCTATGATAAA-AA--TGGGtgaatttaaa
gi|1 : CAGTGTTTTTTTA---G-GTTTTGGG------GTAA-T-GG--AG----A-CCGGTCAG-T-TCCA--TA-GGGGTAAA--T--AGT---------GTAATGACAAA-AA--TGGGggaaa
gi|12 : CAGTGTTTATTATTTTG-GTTTTGGG------GAAA-T-GGCTGG----A-CAGGTCAT-T-TCAA--CA-CGGGAAAA--G--AGgggaaaacaaaacaaagaaaaatgtaggtatgtatgtttaaaacactgagttaacaattcctcattgttgtaaactattcaactggcattaaaatccataaaaaaacactaaaaattaaaaaatatatttttttcttataaattagggtaaaagcatgtctgggaggggaatgacagaaaaggcctaaaaacgccactgtacacatttatataattgcccagatgaaaga
gi|13 : CAGTGTTTTAT--TTTG-ATT-TGGG------GGTA-A-TG--TG----ATCAGGTCTC-T-TCCA--TG-GGGAAAAA--TCAAGTAT-----------TGAAGAA-AA--TAGGAagttgaggaaagaagaaaatgaggaaatatcaaaaca
gi|9 : actaacacatcaaggttGTGTTTTTATTTG-TTTTTGTA------GGAATA-GG--GT----G-CAGGTCCC-T-ATGA--TA-GGGGAAAGATT--GACGT------TGTAATCACga
gi|8 : TTTTTTTATCTGTGTTGGGGGTGAGGTGGAA-ATGG--GG----G-CAGGTCCC-T-TCAAATTA-GA--AAAA--A--AGTGT------TGAAATAATGAATAT--TGGGAggtagtgataatggggaaaaaatcaaaacaacgcaaatcatatgttaaatgaa
gi|20 : ccttTTTTTTTTCTG-GTTTTGGG------GGAA-T-GG--CG----G-CGGGTCCCAT-CCAT--TA-GGG-AAAA--T--CACAT------CGTAATGATGAA-AA--TGGGgaaaagtcaaaaaaattcaaatggtaaaaatgtaaaaaaacagtttacaggtctgcacccctttcttaattg
gi|4 : gTTTTGTTTG-GGTTTTGA------GGAA-T-GG--GG----G-CAGGACCC-T-TCAA--CA-GGGGAAAA--T--AGAGG------TGTTTTGATGAA-AA--TGGGg
gi|2 : gaaaacacaatatatatatataattatgtaaataaaaatctttatgtttcgtgtcatcctcgagatagtaataatatcatacattgtaaataaatctaaatcagttaaagctgaacttgacttacaatattacaactaatattacaattaccgaggggTTTTTTTTG-GCTTTGAA------GGAA-T-AG--GT----T-CCGGTTCC-T-TCAA--TATAGGT---T--T--AGT-T------TGTAATGATGGA-AA--TGGGgggaaataaaagtta
gi|6 : tcaga-GTTTTGGG------GAAA-T-GT--GG----G-CGGATCTC-T-TCCA--AA-GGGGAAAA--T--AGCGT------CATAATGATGAA-AA--TGGGAgaaaatcaaagcaacacaaatcatcactgatttatgttttccaaaaatctctgttcttcataattgttgaactggctttaaatacaaaaaaaaaaagaatttaaatatttaattttgtgaagaatttttcttacatttagtggttaaatgcatactttttggcaagaggaataatactgaattccggcaacaaaaataccactgta
gi|5 : ttgttactcacatcaatgttacaatgttTGTGGG------TGAA-T-TG--AG----A-GGGGCCCC-T-CCAA--TG-GGGGAAAA--T---GTGT------CTTGATGATGAA-AA--TGGaaaaaagaaaaactatgaaatcgcaaatatgtgtgtttagagggaaaaaacatgtttgggaggggattgggctaaaaatagccaaaataaaacactg
gi|16 : tgaaaacatctgatccataactctatataatgtgttaaatataaatgtctttcgatcgtaaaattaaaattgtgttcaacttattctataaataaatctacaggcctgtgaaattgtttacatatcacagatgttacaatgtgTGGA------GGAA-A-GG--GGGTGGA-CAGGTCCA-TGTC-A--TA-GGGGAAAC--T--AGCAT------CATAATGACCAA-AA--TTGGcaggaaaaaataaaaacaatgcaa
gi|21 : GGTTCC-T-TCAA--TA-GGGGAAAA--T--AGTAA------TGTAATGA-TGA-AATTTGGGAgggaaaaatccaaaacaatgcaa
gi|7 : tttagggTCCC-T-TCAA--TA-GGG-GAAA--C--AGCAT------TGTAATGATGAA-AA--TAGaaaaacaatgcaaat
gi|14 : gaccttgaccatcggtgcttttttggtgtttttttaggtgttTCCC-T-TCAA--TA-GAGGGAAA--T--AGCATTCTAAATTCAATGATGAG-AA--TGGtgaaaaaatcaaaatgacgcaaatcataaaaatgaatatttaaagcagattacagatcaacatattgttataaacggattcattggcataaaaaacaacaacactg
gi|11 : gactttcatgggtattgtttttgctttgttttattggcaC-T-TCAA--TA-GCGGAAAA--T--AGTGT------CATAATGATGAA-AG--TGGGtg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TTTTTTTGTTTTTGTTTTGCGGGGAATAGGGAAAAATAGATCGTAATTATGAAAATGATGAAAAATCAAAACAATGCAAATCGTAAGTATGTGAAACAGTTTAATGGTCAACATCCCTGTTTTTCATTGTTTTAAACTGTTAAACTAGCATTCATTCCTATAATAAAAATGTTTAAACAAATTTTGAAGGGAAATTTTTTGCAGAACATAAAAAGAAAATCATATTTTGGCAGGGGGAAAGGGCCAAAGTTACATGTAAATCCCAAAAAA
Unaligned ( gi|15 ): CATTAAGAATTAAAACTTCCTTTTTTTTTAGGCAATATTTATCATAAATTAGGGGGAAAAACATGTTTTTGGAAGGAGAATGGAGCTG
Unaligned ( gi|18 ): TTTTCTAACATTGGAGGGGGTGGGGGAAGCATATTATTTTGAAGGGGGAATGGAGCCAAATATATTTGGGGTAAAAAAAAAC
Unaligned ( gi|22 ): TTTTGGGGGAATTTTTCTTACACTAGGGAAAAAACATAAGTTTTTGGAAAGTGGGAAAAACACACT
Alignments
lowQualScore : 111111111
lowQualScore : 4 66 333333333 33 666666 2 33 33 2 777777 666666 2 2 2
lowQualScore : . .. ......... .. ...... . .. .. . ...... ...... . . .
lowQualScore : 0 77 333333333 77 555555 2 11 11 2 000000 444444 6 4 4
consensus : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-G----CGGGTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
Reference ( family-1064 ) : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-G----CAGGTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
gi|1 : CAGTGTT-TTTTTA---GGTTTTGGGGT---------AATGG--AG-A----CCGGTCAGT-TCCA--TAGGGGTAAA--T-AG---T--GT------AATGACAAA-A-ATGGG
gi|10 : ACTAGTATT-TTTTGG---GGTTTTAGGGG---------AATGT--AG-G----CAGGTCTCT-TCCA--AAGTGGAAAA--C-AGTATT--GT------ATTAACAAA-A-ATGGgggaaaacaaaacaaagaaaaatgtaggtatgtatgtttaaaacactgagttaacaattcctcattgttgtaaactattcaactggcattaaaatccataaaaaaacactaaaaattaaaaaatatatttttttcttataaattagggtaaaagcatgtctgggaggggaatgacagaaaaggcctaaaaacgccactgtacacatttatataattgcccagatgaaaga
gi|11 : gaacatagtcactgatatcagagtttactgtt-G----CGGGTGC-T-TCAA--TAGCGGAAAA--T-AGTGTC--AT------AATGATGAA-A-GTGGGtgaatttaaa
gi|12 : aatCAGTGTT-TATTATTTTGGTTTTGGGGA---------AATGGCTGG-A----CAGGTCATT-TCAA--CACGGGAAAA--G-AGAGTTGAGG------AAAGAAGAA-A-ATGAGggaatgtttcataaattagggggaaaaaacatatgttttagggaggggaatatagtgaaaaaaacacactg
gi|13 : CAGTGTT-TT---ATTTTGATTTGGGGGT--------AATGT--GA-T----CAGGTCTCT-TCCA--TGGGGAAAAA--TCAA------GT------ATTGAAGAA-A-ATAGGAgaaatatcaaaaca
gi|14 : actaacacatcaaggttGTATTGTTTTTGCTTTGTTTT---------------ATTG--G-------CA--TCCCT-TCAA--TAGAGGGAAA--T-AGCATT--CTAAATTCAATGATGAG-A-ATGGga
gi|16 : gactttcatggTGGAGG---------AAAGG--GG-GTGGACAGGTCCATGTCA---TAGGGGAAAC--T-AGCATC--AT------AATGACCAA-A-ATTGGtg
gi|17 : ACCAGTGTT-TTTTTCTTTGGTTATGGGGG---------AAAGG--GG-A----CAGGTCCCT-TCAA--TAGGGTAAAA--T-AGCATC--GC------AATGACTAA-A-ATGGGAgggaaaaatccaaaacaatgcaa
gi|19 : CCAGTGTT-TTTTT----GGTTTTGGGGG---------AATAG--AG-G----CAAG------TTGA--TAGGGAAAGA--C--GTGTT--GC------TATGATAAA-A-ATGGG
gi|2 : TTTTTTTTGGCTTTGAAGG---------AATAG--GT-T----CCGGTTCCT-TCAA--TATAGG--TT--T-AGT-TT--GT------AATGATGGA-A-ATGGGggaaa
gi|20 : tcagaT-TTTTTTTCTGGTTTTGGGGG---------AATGG--CG-G----CGGGTCCCA-TCCA--TTAGGGAAAA--T-CACATC--GT------AATGATGAA-A-ATGGGgaaaatcaaagcaacacaaatcatcactgatttatgttttccaaaaatctctgttcttcataattgttgaactggctttaaatacaaaaaaaaaaagaatttaaatatttaattttgtgaagaatttttcttacatttagtggttaaatgcatactttttggcaagaggaataatactgaattccggcaacaaaaataccactgta
gi|21 : gGGTTCCT-TCAA--TAGGGGAAAA--T-AGTAAT--GT------AATGATGAA-ATTTGGGAg
gi|4 : tttagggTTTTGTTTGGGTTTTGAGG---------AATGG--GG-G----CAGGACCCT-TCAA--CAGGGGAAAA--T-AGAGGT--GT------TTTGATGAA-A-ATGGGaaaaacaatgcaaat
gi|5 : gaaaacacaatatatatatataattatgtaaataaaaatctttatgtttcgtgtcatcctcgagatagtaataatatcatacattgtaaataaatctaaatcagttaaagctgaacttgacttacaatattacaactaatattacaattaccgaggggTGGGTG---------AATTG--AG-A----GGGGCCCCT-CCAA--TGGGGGAAAA--T--GTGTC--TT------GATGATGAA-A-ATGGgggaaataaaagtta
gi|6 : tgaaaacatctgatccataactctatataatgtgttaaatataaatgtctttcgatcgtaaaattaaaattgtgttcaacttattctataaataaatctacaggcctgtgaaattgtttacatatcacagatgttacaatgtgtgGTTTTGGGGA---------AATGT--GG-G----CGGATCTCT-TCCA--AAGGGGAAAA--T-AGCGTC--AT------AATGATGAA-A-ATGGGAcaggaaaaaataaaaacaatgcaa
gi|7 : ttgttactcacatcaatgttacaatgttTCCCT-TCAA--TAGGGGAAA---C-AGCATT--GT------AATGATGAA-A-ATAGaaaaaagaaaaactatgaaatcgcaaatatgtgtgtttagagggaaaaaacatgtttgggaggggattgggctaaaaatagccaaaataaaacactg
gi|8 : gaccttgaccatcggtgcttttttggtgtttttttaggtgttTT-TTTTTATCTG-TGTTGGGGGTGAGGTGGAAATGG--GG-G----CAGGTCCCT-TCAAATTA--GAAAAA--A-AGTGTT--GA------AATAATGAATA-TTGGGAtgaaaaaatcaaaatgacgcaaatcataaaaatgaatatttaaagcagattacagatcaacatattgttataaacggattcattggcataaaaaacaacaacactg
gi|9 : ccttGTG-TTTTTATTTGTTTTTGTAGG---------AATAG--GGTG----CAGGTCCCT-ATGA--TAGGGGAAAGATT-GACGTT--GT------AATCACGgaaaagtcaaaaaaattcaaatggtaaaaatgtaaaaaaacagtttacaggtctgcacccctttcttaattg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTTTTTTGTTTTTGTTTTGCGGGGAATAGGGAAAAATAGATCGTAATTATGAAAATGATGAAAAATCAAAACAATGCAAATCGTAAGTATGTGAAACAGTTTAATGGTCAACATCCCTGTTTTTCATTGTTTTAAACTGTTAAACTAGCATTCATTCCTATAATAAAAATGTTTAAACAAATTTTGAAGGGAAATTTTTTGCAGAACATAAAAAGAAAATCATATTTTGGCAGGGGGAAAGGGCCAAAGTTACATGTAAATCCCAAAAAA
Unaligned ( gi|15 ): CATTAAGAATTAAAACTTCCTTTTTTTTTAGGCAATATTTATCATAAATTAGGGGGAAAAACATGTTTTTGGAAGGAGAATGGAGCTG
Unaligned ( gi|18 ): TTTTCTAACATTGGAGGGGGTGGGGGAAGCATATTATTTTGAAGGGGGAATGGAGCCAAATATATTTGGGGTAAAAAAAAAC
Unaligned ( gi|22 ): TTTTGGGGGAATTTTTCTTACACTAGGGAAAAAACATAAGTTTTTGGAAAGTGGGAAAAACACACT
Alignments
lowQualScore : 111111111
lowQualScore : 3 77 0 222222222 33 2 0 4444 2 33 33 2 777777 666666 2 2 2
lowQualScore : . .. . ......... .. . . .... . .. .. . ...... ...... . . .
lowQualScore : 6 44 3 555555555 44 4 8 7777 2 11 11 2 000000 444444 6 4 4
consensus : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
Reference ( family-1064 ) : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
gi|1 : CAGTGTT-TTTTTA---GGTTTTGGGGT---------AATGG--AG-ACCG----GTCAGT-TCCA--TAGGGGTAAA--T-AG---T--GT------AATGACAAA-A-ATGGG
gi|10 : ACTAGTATT-TTTTGG---GGTTTTAGGGG---------AATGT--AG-GCAG----GTCTCT-TCCA--AAGTGGAAAA--C-AGTATT--GT------ATTAACAAA-A-ATGGgggaaaacaaaacaaagaaaaatgtaggtatgtatgtttaaaacactgagttaacaattcctcattgttgtaaactattcaactggcattaaaatccataaaaaaacactaaaaattaaaaaatatatttttttcttataaattagggtaaaagcatgtctgggaggggaatgacagaaaaggcctaaaaacgccactgtacacatttatataattgcccagatgaaaga
gi|11 : gaacatagtcactgatatcagagtttactgtt-GCGG----GTGC-T-TCAA--TAGCGGAAAA--T-AGTGTC--AT------AATGATGAA-A-GTGGGtgaatttaaa
gi|12 : aatCAGTGTT-TATTATTTTGGTTTTGGGGA---------AATGGCTGG-ACAG----GTCATT-TCAA--CACGGGAAAA--G-AGAGTTGAGG------AAAGAAGAA-A-ATGAGggaatgtttcataaattagggggaaaaaacatatgttttagggaggggaatatagtgaaaaaaacacactg
gi|13 : CAGTGTT-TT---ATTTTGATTTGGGGGT--------AATGT--GA-TCAG----GTCTCT-TCCA--TGGGGAAAAA--TCAA------GT------ATTGAAGAA-A-ATAGGAgaaatatcaaaaca
gi|14 : actaacacatcaaggttGTATTGTTTTTGCTTTGTTTT---------------ATTG--G---CA------TCCCT-TCAA--TAGAGGGAAA--T-AGCATT--CTAAATTCAATGATGAG-A-ATGGga
gi|16 : gactttcatggTGGAGG---------AAAGG--GG-GTGGACAGGTCCATGTCA---TAGGGGAAAC--T-AGCATC--AT------AATGACCAA-A-ATTGGtg
gi|17 : ACCAGTGTT-TTTTTCTTTGGTTATGGGGG---------AAAGG--GG-ACAG----GTCCCT-TCAA--TAGGGTAAAA--T-AGCATC--GC------AATGACTAA-A-ATGGGAgggaaaaatccaaaacaatgcaa
gi|19 : CCAGTGTT-TTTTT----GGTTTTGGGGG---------AATAG--AG-GCAA----G------TTGA--TAGGGAAAGA--C--GTGTT--GC------TATGATAAA-A-ATGGG
gi|2 : TTTTTTTTGGCTTTGAAGG---------AATAG--GT-TCCG----GTTCCT-TCAA--TATAGG--TT--T-AGT-TT--GT------AATGATGGA-A-ATGGGggaaa
gi|20 : tcagaT-TTTTTTTCTGGTTTTGGGGG---------AATGG--CG-GCGG----GTCCCA-TCCA--TTAGGGAAAA--T-CACATC--GT------AATGATGAA-A-ATGGGgaaaatcaaagcaacacaaatcatcactgatttatgttttccaaaaatctctgttcttcataattgttgaactggctttaaatacaaaaaaaaaaagaatttaaatatttaattttgtgaagaatttttcttacatttagtggttaaatgcatactttttggcaagaggaataatactgaattccggcaacaaaaataccactgta
gi|21 : gGG----GTTCCT-TCAA--TAGGGGAAAA--T-AGTAAT--GT------AATGATGAA-ATTTGGGAg
gi|4 : tttaggTTTTGTTTGGGTTTTGAGG---------AATGG--GG-GCAG----GACCCT-TCAA--CAGGGGAAAA--T-AGAGGT--GT------TTTGATGAA-A-ATGGGaaaaacaatgcaaat
gi|5 : gaaaacacaatatatatatataattatgtaaataaaaatctttatgtttcgtgtcatcctcgagatagtaataatatcatacattgtaaataaatctaaatcagttaaagctgaacttgacttacaatattacaactaatattacaattaccgaggggTGGGTG---------AATTG--AG-AGGG----GCCCCT-CCAA--TGGGGGAAAA--T--GTGTC--TT------GATGATGAA-A-ATGGgggaaataaaagtta
gi|6 : tgaaaacatctgatccataactctatataatgtgttaaatataaatgtctttcgatcgtaaaattaaaattgtgttcaacttattctataaataaatctacaggcctgtgaaattgtttacatatcacagatgttacaatgtgtgGTTTTGGGGA---------AATGT--GG-GCGG----ATCTCT-TCCA--AAGGGGAAAA--T-AGCGTC--AT------AATGATGAA-A-ATGGGAcaggaaaaaataaaaacaatgcaa
gi|7 : ttgttactcacatcaatgttacaatgttATCGGTGCT-TTTTTGGT--GTTTT----------------TTT--AG-GTGT----TTCCCT-TCAA--TAGGGGAAA---C-AGCATT--GT------AATGATGAA-A-ATAGaaaaaagaaaaactatgaaatcgcaaatatgtgtgtttagagggaaaaaacatgtttgggaggggattgggctaaaaatagccaaaataaaacactg
gi|8 : gaccttgaccTT-TTTTTATCTG-TGTTGGGGGTGAGGTGGAAATGG--GG-GCAG----GTCCCT-TCAAATTA--GAAAAA--A-AGTGTT--GA------AATAATGAATA-TTGGGAtgaaaaaatcaaaatgacgcaaatcataaaaatgaatatttaaagcagattacagatcaacatattgttataaacggattcattggcataaaaaacaacaacactg
gi|9 : ccttGTG-TTTTTATTTGTTTTTGTAGG---------AATAG--GGTGCAG----GTCCCT-ATGA--TAGGGGAAAGATT-GACGTT--GT------AATCACGgaaaagtcaaaaaaattcaaatggtaaaaatgtaaaaaaacagtttacaggtctgcacccctttcttaattg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTTTTTTGTTTTTGTTTTGCGGGGAATAGGGAAAAATAGATCGTAATTATGAAAATGATGAAAAATCAAAACAATGCAAATCGTAAGTATGTGAAACAGTTTAATGGTCAACATCCCTGTTTTTCATTGTTTTAAACTGTTAAACTAGCATTCATTCCTATAATAAAAATGTTTAAACAAATTTTGAAGGGAAATTTTTTGCAGAACATAAAAAGAAAATCATATTTTGGCAGGGGGAAAGGGCCAAAGTTACATGTAAATCCCAAAAAA
Unaligned ( gi|15 ): CATTAAGAATTAAAACTTCCTTTTTTTTTAGGCAATATTTATCATAAATTAGGGGGAAAAACATGTTTTTGGAAGGAGAATGGAGCTG
Unaligned ( gi|18 ): TTTTCTAACATTGGAGGGGGTGGGGGAAGCATATTATTTTGAAGGGGGAATGGAGCCAAATATATTTGGGGTAAAAAAAAAC
Unaligned ( gi|22 ): TTTTGGGGGAATTTTTCTTACACTAGGGAAAAAACATAAGTTTTTGGAAAGTGGGAAAAACACACT
Alignments
lowQualScore : 111111111
lowQualScore : 3 77 0 222222222 33 2 0 4444 2 33 33 2 777777 666666 2 2 2
lowQualScore : . .. . ......... .. . . .... . .. .. . ...... ...... . . .
lowQualScore : 6 44 3 555555555 44 4 8 7777 2 11 11 2 000000 444444 6 4 4
consensus : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
Reference ( family-1064 ) : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
gi|1 : CAGTGTT-TTTTTA---GGTTTTGGGGT---------AATGG--AG-ACCG----GTCAGT-TCCA--TAGGGGTAAA--T-AG---T--GT------AATGACAAA-A-ATGGG
gi|10 : ACTAGTATT-TTTTGG---GGTTTTAGGGG---------AATGT--AG-GCAG----GTCTCT-TCCA--AAGTGGAAAA--C-AGTATT--GT------ATTAACAAA-A-ATGGgggaaaacaaaacaaagaaaaatgtaggtatgtatgtttaaaacactgagttaacaattcctcattgttgtaaactattcaactggcattaaaatccataaaaaaacactaaaaattaaaaaatatatttttttcttataaattagggtaaaagcatgtctgggaggggaatgacagaaaaggcctaaaaacgccactgtacacatttatataattgcccagatgaaaga
gi|11 : gaacatagtcactgatatcagagtttactgtt-GCGG----GTGC-T-TCAA--TAGCGGAAAA--T-AGTGTC--AT------AATGATGAA-A-GTGGGtgaatttaaa
gi|12 : aatCAGTGTT-TATTATTTTGGTTTTGGGGA---------AATGGCTGG-ACAG----GTCATT-TCAA--CACGGGAAAA--G-AGAGTTGAGG------AAAGAAGAA-A-ATGAGggaatgtttcataaattagggggaaaaaacatatgttttagggaggggaatatagtgaaaaaaacacactg
gi|13 : CAGTGTT-TT---ATTTTGATTTGGGGGT--------AATGT--GA-TCAG----GTCTCT-TCCA--TGGGGAAAAA--TCAA------GT------ATTGAAGAA-A-ATAGGAgaaatatcaaaaca
gi|14 : actaacacatcaaggttGTATTGTTTTTGCTTTGTTTT---------------ATTG--G---CA------TCCCT-TCAA--TAGAGGGAAA--T-AGCATT--CTAAATTCAATGATGAG-A-ATGGga
gi|16 : gactttcatggTGGAGG---------AAAGG--GG-GTGGACAGGTCCATGTCA---TAGGGGAAAC--T-AGCATC--AT------AATGACCAA-A-ATTGGtg
gi|17 : ACCAGTGTT-TTTTTCTTTGGTTATGGGGG---------AAAGG--GG-ACAG----GTCCCT-TCAA--TAGGGTAAAA--T-AGCATC--GC------AATGACTAA-A-ATGGGAgggaaaaatccaaaacaatgcaa
gi|19 : CCAGTGTT-TTTTT----GGTTTTGGGGG---------AATAG--AG-GCAA----G------TTGA--TAGGGAAAGA--C--GTGTT--GC------TATGATAAA-A-ATGGG
gi|2 : TTTTTTTTGGCTTTGAAGG---------AATAG--GT-TCCG----GTTCCT-TCAA--TATAGG--TT--T-AGT-TT--GT------AATGATGGA-A-ATGGGggaaa
gi|20 : tcagaT-TTTTTTTCTGGTTTTGGGGG---------AATGG--CG-GCGG----GTCCCA-TCCA--TTAGGGAAAA--T-CACATC--GT------AATGATGAA-A-ATGGGgaaaatcaaagcaacacaaatcatcactgatttatgttttccaaaaatctctgttcttcataattgttgaactggctttaaatacaaaaaaaaaaagaatttaaatatttaattttgtgaagaatttttcttacatttagtggttaaatgcatactttttggcaagaggaataatactgaattccggcaacaaaaataccactgta
gi|21 : gGG----GTTCCT-TCAA--TAGGGGAAAA--T-AGTAAT--GT------AATGATGAA-ATTTGGGAg
gi|4 : tttaggTTTTGTTTGGGTTTTGAGG---------AATGG--GG-GCAG----GACCCT-TCAA--CAGGGGAAAA--T-AGAGGT--GT------TTTGATGAA-A-ATGGGaaaaacaatgcaaat
gi|5 : gaaaacacaatatatatatataattatgtaaataaaaatctttatgtttcgtgtcatcctcgagatagtaataatatcatacattgtaaataaatctaaatcagttaaagctgaacttgacttacaatattacaactaatattacaattaccgaggggTGGGTG---------AATTG--AG-AGGG----GCCCCT-CCAA--TGGGGGAAAA--T--GTGTC--TT------GATGATGAA-A-ATGGgggaaataaaagtta
gi|6 : tgaaaacatctgatccataactctatataatgtgttaaatataaatgtctttcgatcgtaaaattaaaattgtgttcaacttattctataaataaatctacaggcctgtgaaattgtttacatatcacagatgttacaatgtgtgGTTTTGGGGA---------AATGT--GG-GCGG----ATCTCT-TCCA--AAGGGGAAAA--T-AGCGTC--AT------AATGATGAA-A-ATGGGAcaggaaaaaataaaaacaatgcaa
gi|7 : ttgttactcacatcaatgttacaatgttATCGGTGCT-TTTTTGGT--GTTTT----------------TTT--AG-GTGT----TTCCCT-TCAA--TAGGGGAAA---C-AGCATT--GT------AATGATGAA-A-ATAGaaaaaagaaaaactatgaaatcgcaaatatgtgtgtttagagggaaaaaacatgtttgggaggggattgggctaaaaatagccaaaataaaacactg
gi|8 : gaccttgaccTT-TTTTTATCTG-TGTTGGGGGTGAGGTGGAAATGG--GG-GCAG----GTCCCT-TCAAATTA--GAAAAA--A-AGTGTT--GA------AATAATGAATA-TTGGGAtgaaaaaatcaaaatgacgcaaatcataaaaatgaatatttaaagcagattacagatcaacatattgttataaacggattcattggcataaaaaacaacaacactg
gi|9 : ccttGTG-TTTTTATTTGTTTTTGTAGG---------AATAG--GGTGCAG----GTCCCT-ATGA--TAGGGGAAAGATT-GACGTT--GT------AATCACGgaaaagtcaaaaaaattcaaatggtaaaaatgtaaaaaaacagtttacaggtctgcacccctttcttaattg
blockSeqs : G TT TGAGGTGGA CT T ACAG G AT AT C AGTTGA AAATTC C T T
blockSeqs : . AT T . . . . . . . TATT . T . .
blockSeqs : . GC . . . . . . . . TGTC . A . .
blockSeqs : . CT . . . . . . . . CATT . A . .
blockSeqs : . TT . . . . . . . . CATC . T . .
blockSeqs : . TT . . . . . . . . CATC . C . .
blockSeqs : . GT . . . . . . . . TGTT . C . .
blockSeqs : . GG . . . . . . . . CATC . T . .
blockSeqs : . AT . . . . . . . . TAAT . T . .
blockSeqs : . AT . . . . . . . . AGGT . T . .
blockSeqs : G . . . . . . . . TGTC . T . .
blockSeqs : . . . . . . . . . CGTC . T . .
blockSeqs : . . . . . . . . CATT . T . .
blockSeqs : . . . . . . . . TGTT . T . .
blockSeqs : . . . . . . . . CGTT . T . .
blockSeqs : . . . . . . TTT . T . .
blockSeqs : . . . . . . . C
blockSeqCons : NT CGTC**
originalCons : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
finalCons : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTTTTTTGTTTTTGTTTTGCGGGGAATAGGGAAAAATAGATCGTAATTATGAAAATGATGAAAAATCAAAACAATGCAAATCGTAAGTATGTGAAACAGTTTAATGGTCAACATCCCTGTTTTTCATTGTTTTAAACTGTTAAACTAGCATTCATTCCTATAATAAAAATGTTTAAACAAATTTTGAAGGGAAATTTTTTGCAGAACATAAAAAGAAAATCATATTTTGGCAGGGGGAAAGGGCCAAAGTTACATGTAAATCCCAAAAAA
Unaligned ( gi|15 ): CATTAAGAATTAAAACTTCCTTTTTTTTTAGGCAATATTTATCATAAATTAGGGGGAAAAACATGTTTTTGGAAGGAGAATGGAGCTG
Unaligned ( gi|18 ): TTTTCTAACATTGGAGGGGGTGGGGGAAGCATATTATTTTGAAGGGGGAATGGAGCCAAATATATTTGGGGTAAAAAAAAAC
Unaligned ( gi|22 ): TTTTGGGGGAATTTTTCTTACACTAGGGAAAAAACATAAGTTTTTGGAAAGTGGGAAAAACACACT
Alignments
lowQualScore : 111111111
lowQualScore : 3 77 0 222222222 33 2 0 4444 2 33 33 2 777777 666666 2 2 2
lowQualScore : . .. . ......... .. . . .... . .. .. . ...... ...... . . .
lowQualScore : 6 44 3 555555555 44 4 8 7777 2 11 11 2 000000 444444 6 4 4
consensus : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
Reference ( family-1064 ) : ACCAGTGTT-TTTTTNTTTGGTTTTGGGGG---------AATGG--GG-GCGG----GTCCCT-TCAA--TAGGGGAAAA--T-AGCGTC--GT------AATGACGAA-A-ATGGGA
gi|1 : CAGTGTT-TTTTTA---GGTTTTGGGGT---------AATGG--AG-ACCG----GTCAGT-TCCA--TAGGGGTAAA--T-AG---T--GT------AATGACAAA-A-ATGGG
gi|10 : ACTAGTATT-TTTTGG---GGTTTTAGGGG---------AATGT--AG-GCAG----GTCTCT-TCCA--AAGTGGAAAA--C-AGTATT--GT------ATTAACAAA-A-ATGGgggaaaacaaaacaaagaaaaatgtaggtatgtatgtttaaaacactgagttaacaattcctcattgttgtaaactattcaactggcattaaaatccataaaaaaacactaaaaattaaaaaatatatttttttcttataaattagggtaaaagcatgtctgggaggggaatgacagaaaaggcctaaaaacgccactgtacacatttatataattgcccagatgaaaga
gi|11 : gaacatagtcactgatatcagagtttactgtt-GCGG----GTGC-T-TCAA--TAGCGGAAAA--T-AGTGTC--AT------AATGATGAA-A-GTGGGtgaatttaaa
gi|12 : aatCAGTGTT-TATTATTTTGGTTTTGGGGA---------AATGGCTGG-ACAG----GTCATT-TCAA--CACGGGAAAA--G-AGAGTTGAGG------AAAGAAGAA-A-ATGAGggaatgtttcataaattagggggaaaaaacatatgttttagggaggggaatatagtgaaaaaaacacactg
gi|13 : CAGTGTT-TT---ATTTTGATTTGGGGGT--------AATGT--GA-TCAG----GTCTCT-TCCA--TGGGGAAAAA--TCAA------GT------ATTGAAGAA-A-ATAGGAgaaatatcaaaaca
gi|14 : actaacacatcaaggttGTATTGTTTTTGCTTTGTTTT---------------ATTG--G---CA------TCCCT-TCAA--TAGAGGGAAA--T-AGCATT--CTAAATTCAATGATGAG-A-ATGGga
gi|16 : gactttcatggTGGAGG---------AAAGG--GG-GTGGACAGGTCCATGTCA---TAGGGGAAAC--T-AGCATC--AT------AATGACCAA-A-ATTGGtg
gi|17 : ACCAGTGTT-TTTTTCTTTGGTTATGGGGG---------AAAGG--GG-ACAG----GTCCCT-TCAA--TAGGGTAAAA--T-AGCATC--GC------AATGACTAA-A-ATGGGAgggaaaaatccaaaacaatgcaa
gi|19 : CCAGTGTT-TTTTT----GGTTTTGGGGG---------AATAG--AG-GCAA----G------TTGA--TAGGGAAAGA--C--GTGTT--GC------TATGATAAA-A-ATGGG
gi|2 : TTTTTTTTGGCTTTGAAGG---------AATAG--GT-TCCG----GTTCCT-TCAA--TATAGG--TT--T-AGT-TT--GT------AATGATGGA-A-ATGGGggaaa
gi|20 : tcagaT-TTTTTTTCTGGTTTTGGGGG---------AATGG--CG-GCGG----GTCCCA-TCCA--TTAGGGAAAA--T-CACATC--GT------AATGATGAA-A-ATGGGgaaaatcaaagcaacacaaatcatcactgatttatgttttccaaaaatctctgttcttcataattgttgaactggctttaaatacaaaaaaaaaaagaatttaaatatttaattttgtgaagaatttttcttacatttagtggttaaatgcatactttttggcaagaggaataatactgaattccggcaacaaaaataccactgta
gi|21 : gGG----GTTCCT-TCAA--TAGGGGAAAA--T-AGTAAT--GT------AATGATGAA-ATTTGGGAg
gi|4 : tttaggTTTTGTTTGGGTTTTGAGG---------AATGG--GG-GCAG----GACCCT-TCAA--CAGGGGAAAA--T-AGAGGT--GT------TTTGATGAA-A-ATGGGaaaaacaatgcaaat
gi|5 : gaaaacacaatatatatatataattatgtaaataaaaatctttatgtttcgtgtcatcctcgagatagtaataatatcatacattgtaaataaatctaaatcagttaaagctgaacttgacttacaatattacaactaatattacaattaccgaggggTGGGTG---------AATTG--AG-AGGG----GCCCCT-CCAA--TGGGGGAAAA--T--GTGTC--TT------GATGATGAA-A-ATGGgggaaataaaagtta
gi|6 : tgaaaacatctgatccataactctatataatgtgttaaatataaatgtctttcgatcgtaaaattaaaattgtgttcaacttattctataaataaatctacaggcctgtgaaattgtttacatatcacagatgttacaatgtgtgGTTTTGGGGA---------AATGT--GG-GCGG----ATCTCT-TCCA--AAGGGGAAAA--T-AGCGTC--AT------AATGATGAA-A-ATGGGAcaggaaaaaataaaaacaatgcaa
gi|7 : ttgttactcacatcaatgttacaatgttATCGGTGCT-TTTTTGGT--GTTTT----------------TTT--AG-GTGT----TTCCCT-TCAA--TAGGGGAAA---C-AGCATT--GT------AATGATGAA-A-ATAGaaaaaagaaaaactatgaaatcgcaaatatgtgtgtttagagggaaaaaacatgtttgggaggggattgggctaaaaatagccaaaataaaacactg
gi|8 : gaccttgaccTT-TTTTTATCTG-TGTTGGGGGTGAGGTGGAAATGG--GG-GCAG----GTCCCT-TCAAATTA--GAAAAA--A-AGTGTT--GA------AATAATGAATA-TTGGGAtgaaaaaatcaaaatgacgcaaatcataaaaatgaatatttaaagcagattacagatcaacatattgttataaacggattcattggcataaaaaacaacaacactg
gi|9 : ccttGTG-TTTTTATTTGTTTTTGTAGG---------AATAG--GGTGCAG----GTCCCT-ATGA--TAGGGGAAAGATT-GACGTT--GT------AATCACGgaaaagtcaaaaaaattcaaatggtaaaaatgtaaaaaaacagtttacaggtctgcacccctttcttaattg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTTTTTTGTTTTTGTTTTGCGGGGAATAGGGAAAAATAGATCGTAATTATGAAAATGATGAAAAATCAAAACAATGCAAATCGTAAGTATGTGAAACAGTTTAATGGTCAACATCCCTGTTTTTCATTGTTTTAAACTGTTAAACTAGCATTCATTCCTATAATAAAAATGTTTAAACAAATTTTGAAGGGAAATTTTTTGCAGAACATAAAAAGAAAATCATATTTTGGCAGGGGGAAAGGGCCAAAGTTACATGTAAATCCCAAAAAA
Unaligned ( gi|15 ): CATTAAGAATTAAAACTTCCTTTTTTTTTAGGCAATATTTATCATAAATTAGGGGGAAAAACATGTTTTTGGAAGGAGAATGGAGCTG
Unaligned ( gi|18 ): TTTTCTAACATTGGAGGGGGTGGGGGAAGCATATTATTTTGAAGGGGGAATGGAGCCAAATATATTTGGGGTAAAAAAAAAC
Unaligned ( gi|22 ): TTTTGGGGGAATTTTTCTTACACTAGGGAAAAAACATAAGTTTTTGGAAAGTGGGAAAAACACACT