lowQualScore : 333333 1 1 11 1111 1 1 1 66666666666 1 1 3333333 11 333333333333 11
lowQualScore : 3 444444 3 88888 5 2 3 3 1 6 3 2 77 99 0000 3 4 3 6 3 3 7 5 4 7 0 77777777777 4 555 555 1 4 1 1 2 2 6666666 44 88 9 444 2 777777 33 66 555555555555 666666666 444 5 33 8 33 44 2 33 33 444 33 0 3 2
lowQualScore : . ...... . ..... . . . . . . . . .. .. .... . . . . . . . . . . . ........... . ... ... . . . . . . ....... .. .. . ... . ...... .. .. ............ ......... ... . .. . .. .. . .. .. ... .. . . .
lowQualScore : 6 888888 6 77777 2 5 3 5 0 7 6 8 44 22 5555 7 5 6 0 3 3 1 4 1 8 2 22222222222 9 000 000 9 7 2 9 7 7 7777777 55 66 8 444 5 222222 44 99 111111111111 777777777 666 3 77 6 77 00 3 11 99 999 99 8 1 0
consensus : TGTTGTATATTGACA-A-A-CA-T-GTTACT---TTTGTACTATGGCACTTGTATGATTTATGTTAAAGACGTGTC-AGTTGATCAGGTCT-TGT-TNTCTTTGTA-CAATGCTAATGTGTT-TGGGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAGAA--TG--A-GA-TTGCTATTGTTGAT---ACATGATA---TGCTGGGAGTATGCTGGTGAATC-TGA-GTGCCGAGGCAGTTAGAAAACTGATTTCGACN-GAACAACATCTAAA---ATTAT-TA------C--C--TCTCT-----C----T----A----TA-A-AAT-TG--TGAA--ATAAATAGTTAAAAACAA--AG--GAA--CTTATTTTGAG-TTATATTCCCCAAATATAAC
Reference ( gi|2 ) : TGTTGTATATTGACA-A-A-TG-T-ATTACT---TTTGTACTATGGAACTTGTATGATTTATGTTAAAGACGTGTC-AGTTCATCAGGTCT-TGT-TATCTTTGTA-TAAAATTAATGTGTT-TGAGG-G-TCAGTTGGTCAGCTCCGGACAGCGTCCA-GCGAGGGGAAGCGTTGACAGCATGCTGAGATAAGAA-ATG--ACGATTTGCTATTGTTTAT---ACATGATA---TGCTGGGAGTTTGCTTGTGAGTC-TGA-GTGCCAAGTTAGTTAGAAAATCGATTTCGACC-GAACAAGATCTAAA---ATTAT-TA------C--C--TCTGT-----C----T----A----TA-A-AAT-TG--TAAA--ATAAATATTTAAAAACAA--AA--GAA--CTTATTTTGAG-TTATATTCCCCAAATATAAC
gi|10 : TGTTTTATATTGACA-A-AACA-T-GTTATT---TTTGTACTATGGCATTTGTATG---TATGTTAAAGAGGTGTC-AGTTGATCAGGTTT-TGT-TATCTTTGTA-CAATGCTAATGT-TC-TGTGGAG-TCAGTTGGTCAGTTCTGGACAGTATCCA-GGGAGAGAAAGCGTCGACAACATGCTGTGATAAGGG-----------TTGCTATTGTTGGT---ACATGCTA---TGCTG-----------GTAAATC-TGA-GTG-CAGGGCAGTTATATACT-GATTTCGACC-GACCAAAGTCTAAA---ATTAT-TT------C--C--TCTCT-----T----T----A----TA-------------------------TTAAAA------------------ATTT--AG-TTATATTCCCCAAATAAAAC
gi|1 : TGTTGTAGATTGATA-A-AACA-T-GTTACC---TTTTCACTTTTGCACATGTTTGATATATGTT-ATGAGGTGTT-AGTTGGTTAGGTCT-ac
gi|6 : gtaatattaaagatatatagtactatgtgtttagcaagttatcgtatgtgcatttaattaattcagcGTTTTATATTGACA-A-A-AAAT-ATTACT---TTTGTACTATGGCACTTGTATGATTTATTATAAAGACGTGTC-AGTTGATCATATCT-TGT-TTTCTTTGTA-TAATGTTAATGT----------G-TCAGTTGGTCAGCTCTGGACAGTGTCCATGGGAGAGAAAGTGTTGACAGCATGCTGTGATAAGAA-TTG--AAGAATTGCTGTTGTTTAA---ACATGATA---TGCTGAAAGTATACTGGTGAATC-TG--GTGTT---TGAGTCACCAAA-------CGACC-GAACAATATCTAAA---ATTAT-TA------C--C--TCTCT-----CTCTAT----A----TA-A-ACT-TG--TGAA--ATAAATAGTTAAAAATAA--AG--GAA--CTTATTTTGAG-TTATATTCCCCAAATATAACggatagtgtccagaaagagaaggtgcggtaagtatatggtacgggttgctattgttaataaatgatatgctgggaaattgatggtgaatctaagtgcaaggtagttagaaaaccaatttcggcagaacaacatttaatgttattatctctctctctctctgtaaaattgtgaaataaatagtaaaaacaaaggaagttatttgagttatattcccaatttaata
gi|3 : GTTGTGTATTAACATA-A-CA-T-ATTAAT---TTTGTACTATGGCACTTGTATGATTTATGTTAAAGACGTGTC-AGTAGATCAGGTCT-TGT-TTTCTTTGTA-AAATGTTAATGTGTT-TGGGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-AATAAAGAAAGCGCTGACAACATACTGTGATTAGAA-TTG--TAGACTTGCTATTATTTAT---ACA--ATA---CGCTGGGGGTATGCTGGTT-GTC-GGA-GTG-CAAG-CAGTTAGAAAACTGATTTTAACC-GAACAATATGTAAA---AGTAT-TG------C--CTTTCTAT-----A----TATTAA----TA-A-AAG-TG--TGAA--ATAAATAGTTAAAAACAA--AA--AAA--CCTATTTTGAG-TAATATTCCCCAAATA
gi|8 : GTTGGATATTGACA-A-A-CA-T-ATTACTACTCTTGTACTATGGCACTTGTATGATTTATGTTACAGACGTGTC-AGTTGATCAGGTCT-TGT-TTTCTTTGTA-CAATATTAATGTGTT-TGGGA-G-TCAGTTGTTCAGCTTTGGA-GGCGTCCA-GGGAGAGAAAGCATTGACAGCATGCTGTGATAAGAA-TTG--AAGAATTACTATTGTTTAT---ACATGCTA---TGCTG-----------GTGAATT-TGA-GTGCAAA--CAGTTAGAATACTGATTTCGACA-GAACATCATCTAAA---ATTAT-TA------CCTC--TCTCT-----C----T----A----TA-A-AAT-TG--TGAA--ATAAATAGTTCAAAACAA--AG--GGA--CTTATTCTa
gi|12 : GTTGTATATTGATA-A-AACA-T-ATCACT---CTTGTACTATGGCACTTGTATGATTTATGTTAAAGAAGTGTC-AGTTGATCAGGTCT-TGT-TTTCTTTGTA-CAATATTACTGTGTT-TGGGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCAGGCTGTGATAAGAA-TTG--AAGAATTGCTATTGTTTAT---GCATGATA---TGATGGAAGGATGCTGGTGAGTC-TGT-GTG-CAAG-CAGTTAGAAAACTGATTTCGATT-AAACAACATCTAAT---ATTAT-TA------C--C--TTTccaaata
gi|7 : GTTGTATATTGGCA-ATA-CT-T-GTTATC---TTTGTACTATAGCACTTGTATGATTTATGTTAAAGAGGTGCC-CGTTGATCGGGTATATGT-AATCTTTGTACTATCCTTA---TGTTGTGGGGAG-TCAGTTGGTCAGTTCTGGACAGCGC------------------TGGCAGTATGCTGTGATAAGG---------GATT--CTGTTGTTGAT---ACATAATA---TGCTGGGAGTATGCTGGTGAATC-TGA-GTG-CGGGGCAGTTCGAAAACTGATATCGGCA-GAACAAGATCTGAA---ATTAT-TT------C--C--TCTCTATATAT----T----A----TA-A-AAC-TG--T-GA--ATACAGAGTT-AAAACAATTAA--AAA--CTTAGATTGAG-TAATATTCCCGAAATATAAt
gi|18 : GTTGAATATTTACA-A-AACA-T-ATTG------TTGTACTATGGCACTTGTATGATTTATGTT
gi|5 : TTGTATATTGACA-ATA-TA-T-GTTATA---TTTGCACTAGGGCACTTGTATGACTTATGTTAAAAAGCTGTC-AGTTGATCAGGTCTGTGT-TATCTTTGAA-TAATGCTTATGTTAT-TGAGA-G-TCAGTTGGTCAGTTCTGGACAGTCTCCA-GGGAGAGAAAGCGTTGACAGAATGTTGTGATAAGGG-----------TTGTTATTGTCGAT---ACATGATC---TGCCGGGAGTATGCTGATGAATC-TGG-GTGCGAAG-CAGTTATAGCACTGATTTCGTCA-GGACAAGACCTACA---ACTAT-TA------C--G--TCTTTATATAT----T----A----TA-A-AGT-TG--TGAT--ATAAATATT---AAACAA--GAGGGAA--ATTA-TTTGAG-TTATATTCTCTAACTAT
gi|4 : TTGTATATTGACG-ATA-CA-T-GTTGTT---TTTGTACTATGGTATTTGT--GATTTATGTTAAAGGCGTGTCTGGTTGATCAAGTAT-TGA-TATATTTGTG-CAATGCTACCGT-TC-TGATG-ACTCAGTTGGTCAGTTCTGGACAGTGTTCA-GGGAGAGAAATCGTTGACAGCATGCTGGGATACGAA-----------TTGCTATTGTTGAT---ACATGATA---CGCTGGGAGTATGCTGGTGAGTC-TGA-GTG-CGAGGCAGTTAAAAAACTGATTTCGGCA-GA--AACATCTAGA---ATTAT-TA------T--C--TCTCT-----C----T----C----TA-T-ATT-TGTTTAGGTTATAAAT-CCCAAATATAA--CA--AAATTTTTACGTTGAATTTATATT
gi|9 : GTATATAGAAA-ACA-TA-TCATTATT---TTTGTACTATG------------------------ACGTGTC-AGTTTATCAAGTCT-TGT-TTTCTTTGTA-CAATGCTAATGTGTT-TGGGA-G-TCAGTTTGTCAGCTCTGGACAGTGCCCA-GAGAGATAAAGCATTCAAAGCATGCTGTGATAAGAA-----------TTGCTATTGTTGAT---ACATGATA---TGCTGGTAGTATGCTGTTGAATC-TGA-ATG-CAAG-CAGTTAGAAAACTGATTTCGACCGGAACAACATCTGAA---ATTGT-AA------C--C--TCTCT-----A----T----A----TA-A-AAA-AG--TGAA--ATAAATAGCT-AAATCAA--AT--GAA--CTTATTTTGAG-AGATATTCCACAAATATAACacataatttatattaac
gi|11 : ATGGCACTTGTATGGTTTATGTTAAAGAGGTGTC-AG--------GT-----T-TATCTTTGTA-CAACGCTAATGT-TC-TGGGGAA-TCAGTTGGTAAATTCTGGACAGTGTCCA-GGGAGAGGAAGCATTGACTGCATGCTGTGATAAG-----G--GC----TGCTAATTTTGAT---ACATGATATTCTGCTGGGCGTATGCTGGTGAATC-TGA-GTG-CGAGACAGTTAGAAAACTGATTTCCACT-GAACAATATT-------ATTAT-TA------C--C--TCTCT-----CTA--T----A----TA-A-AAT-TG--TGAA--ATATATAGTTAAAAACAA--AG--GAA--CTTATTTTGAG-TTATATTTCCAAAa
gi|1 : TTGTA-GATTGAT----AAAACATGTT-ACCTTTTCAC-TTT-TGCACATGTTTG-------AT--ATATGTTATGAGGTG-TTAGTTGGTTAGGTCTGGATAGTGTCCA-G-AAAGAGAAG----------GTGC---GGTAAGTATATGGTACGGGTTGCTATTGTTAAT---AAATGATA---TGCTGGGAAATTGATGGTGAATC-TAA-GTG-CAAGGTAGTTAGAAAACCAATTTCGGCA-GAACAACATTTAAT---GTTAT-TATCTCTCT--C--TCTCT-----C----T----G----TA-A-AAT-TG--TGAA--ATAAATA-GTAAAAACAA--AG--GAA--GTTA-TTTGAG-TTATATTCCC--AATTTAA
gi|13 : gtaatattaaagatatatagtactatgtgtttagcaagttatcgtatgtgcatttaattaattcagctgGAAAGTGGCAA-GGGAGAGAAAGCATTGACAGCATGCTG---TAAAAA-GGG-------TTGTGGTTGTTGAT---ACATGATA---TGCTCGGAGTATGCTGTTGACTC-TGA-GTG-CAAGGGAGTTAGAAAACTGATTTTGAC---AAC---ATCTAAA---ATTAT-TA------C--CTTTCTAT-----A----T----A----TATATAAT-TG--TGAA--ATAAAAAGTTAAta
gi|14 : ctttagtatagttggttacaatgaaaatatagttggttacaatgaaattCAGCATGCTGTGATAAGAA-ATA--ACGAATTGCTATTGTTTAT---ACATGATA---TGCTGGGAGTATGCTTGTGAGTC-TGA-GTGCAAAGTTAGTAAGAAAATTAATTTCGACC-GAATAAGATCTAAA---ATCAT-TA------C--C--TCTCT-----C----T----T----TA-A-AAT-TG--TTAA--GTAACTTTTTAAAAACCA--AA--TAA--CTTATTTTGAG-TTATATTCCCCAAATATAACtcagagtgcaaaccat
gi|15 : ATTGTTTATTGTACATG-TA---TGATG------TACATGTGGGTTATGGCGTACGAAAC-AGTAAGAAAACGGATTTATGCA-GAACAGTATCTCAA---ACTAT-TA------T--C--TCT-------C----T----ACACATA-A-AATGTG--TGAA--AGAAATAATTAAA--TAA--AA--GAA--CATATTTC-AG-TTATAT
gi|16 : gataaaactatcaacctatgaaactatggtacaTCGTGACCC-CAA-TTGC-GAGACAGTTAGAAAACTGATTCTGGCA-GAACAACATTTAAAAGTATTATCTA------C--C--TCTAT-----TCA--C----A----TA-A-AAT-TG--TGAA--ATAAAT--------------AG--AAA--CTTATTTCGAA-TTACATTCCCCAAATATTAC
gi|17 : aagaaatgatggagTAGAAAACTGTTTTCTGCC-GAACAGTATC---------------------C--C--TCTAC-----A----C----A----TA-----TGTG--TGAA--ATAAATAATTACA--CAA--AG--GAA--CTTATTTC-AG-ATATATTTCCTAAGTAagaaaattccttcaact
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): AATTATGAAACACAAAGTAAACAAACCAGAAACTTGTTATAAAAG
Alignments
lowQualScore : 111 1 11 7777777777 22222 33333333333333333
lowQualScore : 3 222 3 0 666 77777 555 555 1 3 3 7777 555 6 1 44 3 2 3 3 00 3 3 3333333333 5 2 2 444 1 2 2 1 55555 66666 33 1 2 666666 33 00000000000000000 2 444 2 5 2 0 22 33 1
lowQualScore : . ... . . ... ..... ... ... . . . .... ... . . .. . . . . .. . . .......... . . . ... . . . . ..... ..... .. . . ...... .. ................. . ... . . . . .. .. .
lowQualScore : 6 888 6 2 444 44444 444 888 8 3 3 1111 888 7 0 66 3 9 3 3 11 3 1 1111111111 3 7 7 777 8 4 4 6 66666 99999 11 8 1 888888 22 22222222222222222 5 444 5 0 1 7 99 99 0
consensus : TGTTGTATATTGACA-A-A-CA-TAT---TACT---TTTGTACTATGGCACTTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-GGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
Reference ( family-1055 ) : TGTTGTATATTGACA-A-A-CA-TGT---TACT---TTTGTACTATGGCACTTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTNTCTTTGTACAATGCT--A-ATGTGTT-TG-GGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTGATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|1 : TCGTATGTGCATTTA-ATTAATTCAGCTGTTGTA-GATTGATAAAACATGTTACCT-TTTCACTTTTGCACA-TGTTTGATATATGTTATG-AGGTG-TTAGTTGGTTAGGTCTGGATAGTGTCCA-GAAAGAGAAGGTGCGGTAAGTATA---TGGTACG----------GG-TTGCT-ATTGTTAATAAATGATA---TGCTGGGAAATTGATGG-TG-AATCTA---A-GTG-C--AAGGTAGTTAGAAAACCAATTTCGG-CAGAACAACATTTAATGTTATTATCTCTCT--CTCTCT-----C----T------GTA-A---A-AT-TGTGAAATAAATAG-TAAAAACAA--AGGAAGTTA-TTTGAGTTATATTCCC--AATTTAA
gi|10 : gtaatattaaagatatatagtactatgtgtttagcaagttaTGTTTTATATTGACA-A-AACA-TGT---TATT---TTTGTACTATGGCATTTGTATG------TATGTTAA---AGAGGT-GTC-AGTTGAT----CAGGT---TT-TGTTATCTTTGTACAATGCT--A-ATGT-TC-TGTGGA-G-TCAGTTGGTCAGTTCTGGACAGTATCCA-GGGAGAGAAAGCGTCGACAACATGCTGTGATAAG----------GG-TTGCT-ATTGTTGGTAC-----A---TGC------TATGCTGG-TA-AATCTG---A-GTG-C-AG-GGCAGTTAT-ATACTGATTTCGA-CCGACCAAAGTCTAAAATTATTT------C--CTCTCT-----T----T------ATA------------------------TTAAAA--------------ATTT--AGTTATATTCCCCAAATAAAACta
gi|11 : ATGGCACTTGTATG---GTTTATGTTAA---AGAGGT-GTC-AG------------GT--------TTATCTTTGTACAACGCT--A-ATGT-TC-TG-GGGAA-TCAGTTGGTAAATTCTGGACAGTGTCCA-GGGAGAGGAAGCATTGACTGCATGCTGTGATAAG----------GG-CTGCT-AATTTTGATACATGATATTCTGCTGGGCGTATGCTGG-TG-AATCTG---A-GTG---CGAGACAGTTAGAAAACTGATTTCCA-CTGAACAATATT----ATTATTA------C--CTCTCT-----CTA--T------ATA-A---A-AT-TGTGAAATATATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTTCCAAAac
gi|12 : GTTGTATATTGATA-A-AACA-TAT---CACT---CTTGTACTATGGCACTTGTATG---ATTTATGTTAA---AGAAGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-CTGTGTT-TG-GGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCAGGCTGTGATAAG-AATTG-AAGAA-TTGCT-ATTGTTTATGCATGATA---TGATGGAAGGATGCTGG-TG-AGTCTG---T-GTG-C---AAGCAGTTAGAAAACTGATTTCGA-TTAAACAACATCTAATATTATTA------C--CTTT
gi|13 : GAAAGTGGCAA-GGGAGAGAAAGCATTGACAGCATGCTGTAAAAAG----------GG-TTGTG-GTTGTTGATACATGATA---TGCTCGGAGTATGCTGT-TG-ACTCTG---A-GTG---CAAGGGAGTTAGAAAACTGATTTTG------ACAACATCTAAAATTATTA------C--CTTTCT-----A----T------ATATATATA-AT-TGTGAAATAAAAAGTTAAt
gi|14 : ctttagtatagttggttacaatgaaaatatagttggttacaatgaaattCAGCATGCTGTGATAAG-AAATA-ACGAA-TTGCT-ATTGTTTATACATGATA---TGCTGGGAGTATGCTTG-TG-AGTCTG---A-GTG-C-AAAGTTAGTAAGAAAATTAATTTCGA-CCGAATAAGATCTAAAATCATTA------C--CTCTCT-----C----T------TTA-A---A-AT-TGTTAAGTAACTTTTTAAAAACCA--AATAACTTATTTTGAGTTATATTCCCCAAATATAACtcagagtgcaaaccat
gi|15 : A-TTGTTTATTGTACATGTATGATG---TAC-------ATGTGGG-TT-A---TG-----GCG-TACGAAACAGTAAGAAAACGGATTTATG-CAGAACAGTATCTCAAACTATTA------T--CTCTCTA----CA---C------ATA-A---A-ATGTGTGAAAGAAATAATTAAA--TAA--AAGAACATATTTC-AGTTATAT
gi|16 : gataaaactatcaacctatgaaactatggtacaG-TG-ACCCCA---A-TTG-C--GAGACAGTTAGAAAACTGATTCTGG-CAGAACAACATTTAAAAGTATTA------T--CTACCT-----C----TATTCACATA-A---A-AT-TGTGAAATAAAT--------------AGAAACTTATTTCGAATTACATTCCCCAAATATTAC
gi|17 : aagaaatgatggagtcTATGTTGG-TATAAT-TGTACATATG-C---AGGCATATAGAAAACTGTTTTCTG-CCGAACAGTATCC-----------------------CT-----C----T------ACA-C---ATATGTGTGAAATAAATAATTACA--CAA--AGGAACTTATTTC-AGATATATTTCCTAAGTAagaaaattccttcaact
gi|18 : GTTGAATATTTACA-A-AACA-TAT---TG------TTGTACTATGGCACTTGTATG---ATTTATGTT
gi|2 : TGTTGTATATTGACA-A-A-TG-TAT---TACT---TTTGTACTATGGAACTTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTCAT----CAGGT---CT-TGTTATCTTTGTATAAAATT--A-ATGTGTT-TG-AGG-G-TCAGTTGGTCAGCTCCGGACAGCGTCCA-GCGAGGGGAAGCGTTGACAGCATGCTGAGATAAGAAA-TG-AC-GATTTGCT-ATTGTTTATACATGATA---TGCTGGGAGTTTGCTTG-TG-AGTCTG---A-GTG-C-CAAGTTAGTTAGAAAATCGATTTCGA-CCGAACAAGATCTAAAATTATTA------C--CTCTGT-----C----T------ATA-A---A-AT-TGTAAAATAAATATTTAAAAACAA--AAGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|3 : GTTGTGTATTAACATA-A-CA-TAT---TAAT---TTTGTACTATGGCACTTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTAGAT----CAGGT---CT-TGTTTTCTTTGTAAAATGTT--A-ATGTGTT-TG-GGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-AATAAAGAAAGCGCTGACAACATACTGTGATTAG-AATTGTA--GACTTGCT-ATTATTTATACA--ATA---CGCTGGGGGTATGCTGGTTG---TCGG---A-GTG-C---AAGCAGTTAGAAAACTGATTTTAA-CCGAACAATATGTAAAAGTATTG------C--CTTTCT-----A----TATATTAATA-A---A-AG-TGTGAAATAAATAGTTAAAAACAA--AAAAACCTATTTTGAGTAATATTCCCCAAATA
gi|4 : TTGTATATTGACG-ATA-CA-TGT---TGTT---TTTGTACTATGGTATTTGT--G---ATTTATGTTAA---AGGCGT-GTCTGGTTGAT----CAAGT---AT-TGATATATTTGTGCAATGCT--A-CCGT-TC-TG-ATG-ACTCAGTTGGTCAGTTCTGGACAGTGTTCA-GGGAGAGAAATCGTTGACAGCATGCTGGGATACG-A---------A-TTGCT-ATTGTTGATACATGATA---CGCTGGGAGTATGCTGG-TG-AGTCTG---A-GTG---CGAGGCAGTTAAAAAACTGATTTCGG-CAGA--AACATCTAGAATTATTA------T--CTCTCT-----C----T------CTA-T---A-TT-TGTa
gi|5 : TTGTATATTGACA-ATA-TA-TGT---TATA---TTTGCACTAGGGCACTTGTATG---ACTTATGTTAA---AAAGCT-GTC-AGTTGAT----CAGGT---CTGTGTTATCTTTGAATAATGCT--T-ATGTTAT-TG-AGA-G-TCAGTTGGTCAGTTCTGGACAGTCTCCA-GGGAGAGAAAGCGTTGACAGAATGTTGTGATAAG----------GG-TTGTT-ATTGTCGATACATGATC---TGCCGGGAGTATGCTGA-TG-AATCTG---G-GTG---CGAAGCAGTTATAGCACTGATTTCGT-CAGGACAAGACCTACAACTATTA------C--GTCTTTATATAT----T------ATA-A---A-GT-TGTGATATAAATA-TTAAACAAGA--GGGAAATTA-TTTGAGTTATATTCTCTAACTATttaggttataaatcccaaatataacaaaatttttacgttgaatttatattacataatttatattaac
gi|6 : GTTTTATATTGACA-A-A-AAATAT---TACT---TTTGTACTATGGCACTTGTATG---ATTTATTATAA---AGACGT-GTC-AGTTGAT----CATAT---CT-TGTTTTCTTTGTATAATGTT--A-ATGT-----------G-TCAGTTGGTCAGCTCTGGACAGTGTCCATGGGAGAGAAAGTGTTGACAGCATGCTGTGATAAG-AATTG-AAGAA-TTGCT-GTTGTTTAAACATGATA---TGCTGAAAGTATACTGG-TG-AATCTG-----GTGTT-TGAGTCACC---AAA--------CGA-CCGAACAATATCTAAAATTATTA------C--CTCTCT-----CTCTAT------ATA-A---A-CT-TGTGAAATAAATAGTTAAAAATAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|7 : GTTGTATATTGGCA-ATA-CT-TGT---TATC---TTTGTACTATAGCACTTGTATG---ATTTATGTTAA---AGAGGT-GCC-CGTTGAT----CGGGT---ATATGTAATCTTTGTACTATCCT--T-ATGT-TG-TG-GGGAG-TCAGTTGGTCAGTTCTGGACAG------------------CGCTGGCAGTATGCTGTGATAAG-G--------GA-TT-CT-GTTGTTGATACATAATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG---CGGGGCAGTTCGAAAACTGATATCGG-CAGAACAAGATCTGAAATTATTT------C--CTCTCTATATAT----T------ATA-A---A-AC-TGTG-AATACAGAGTT-AAAACAATTAAAAACTTAGATTGAGTAATATTCCCGAAATATAA
gi|8 : GTTGGATATTGACA-A-A-CA-TAT---TACTACTCTTGTACTATGGCACTTGTATG---ATTTATGTTAC---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-ATGTGTT-TG-GGA-G-TCAGTTGTTCAGCTTTGGA-GGCGTCCA-GGGAGAGAAAGCATTGACAGCATGCTGTGATAAG-AATTG-AAGAA-TTACT-ATTGTTTATAC-----A---TGC------TATGCTGG-TG-AATTTG---A-GTG-C---AAACAGTTAGAATACTGATTTCGA-CAGAACATCATCTAAAATTATTA------CCTCTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTCAAAACAA--AGGGACTTATTCT
gi|9 : GTATATAGA-A-A-A-CA-TATCATTATT---TTTGTACTATG------------------------------ACGT-GTC-AGTTTAT----CAAGT---CT-TGTTTTCTTTGTACAATGCT--A-ATGTGTT-TG-GGA-G-TCAGTTTGTCAGCTCTGGACAGTGCCCA-GAGAGATAAAGCATTCAAAGCATGCTGTGATAAG-A---------A-TTGCT-ATTGTTGATACATGATA---TGCTGGTAGTATGCTGT-TG-AATCTG---A-ATG-C---AAGCAGTTAGAAAACTGATTTCGACCGGAACAACATCTGAAATTGTAA------C--CTCTCT-----A----T------ATA-A---A-AA-AGTGAAATAAATAGCT-AAATCAA--ATGAACTTATTTTGAGAGATATTCCACAAATATAACccaaata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AATTATGAAACACAAAGTAAACAAACCAGAAACTTGTTATAAAAG
Alignments
lowQualScore : 111 111 1 11 7777777777 22222 33333333333333333
lowQualScore : 3 111 3 000 2 555 6666 555 555 1 3 3 7777 555 6 1 44 3 2 3 3 00 3 3 3333333333 5 2 1 444 1 2 2 1 55555 66666 33 1 2 666666 33 00000000000000000 2 444 2 5 2 0 22 33 1
lowQualScore : . ... . ... . ... .... ... ... . . . .... ... . . .. . . . . .. . . .......... . . . ... . . . . ..... ..... .. . . ...... .. ................. . ... . . . . .. .. .
lowQualScore : 3 000 3 444 9 888 5555 444 888 8 3 3 1111 888 7 8 66 3 9 3 3 11 3 1 1111111111 3 7 0 777 8 4 4 6 66666 99999 11 8 1 888888 22 22222222222222222 5 444 5 0 1 7 99 99 0
consensus : TGTTGTATATTGACA-A-A-CA-TAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-GGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
Reference ( family-1055 ) : TGTTGTATATTGACA-A-A-CA-TAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-GGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|1 : ATATTAA-A-G-A-TA-TATAG-TACT---AT-GTGTT-TAGCAAGTTATCGTATGTGCATTTA-ATTAATTCAGCTGTTGTA-GATTGATAAAACATGTTACCT-TTTCACTTTTGCACA-TGTTTGATATATGTTATG-AGGTG-TTAGTTGGTTAGGTCTGGATAGTGTCCA-GAAAGAGAAGGTGCGGTAAGTATA---TGGTACG----------GG-TTGCT-ATTGTTAATAAATGATA---TGCTGGGAAATTGATGG-TG-AATCTA---A-GTG-C--AAGGTAGTTAGAAAACCAATTTCGG-CAGAACAACATTTAATGTTATTATCTCTCT--CTCTCT-----C----T------GTA-A---A-AT-TGTGAAATAAATAG-TAAAAACAA--AGGAAGTTA-TTTGAGTTATATTCCC--AATTTAA
gi|10 : gtaTGTTTTATATTGACA-A-AACA-TGT---TATT---TTTGTACTATGGCAT----TTGTATG------TATGTTAA---AGAGGT-GTC-AGTTGAT----CAGGT---TT-TGTTATCTTTGTACAATGCT--A-ATGT-TC-TGTGGA-G-TCAGTTGGTCAGTTCTGGACAGTATCCA-GGGAGAGAAAGCGTCGACAACATGCTGTGATAAG----------GG-TTGCT-ATTGTTGGTAC-----A---TGC------TATGCTGG-TA-AATCTG---A-GTG-C-AG-GGCAGTTAT-ATACTGATTTCGA-CCGACCAAAGTCTAAAATTATTT------C--CTCTCT-----T----T------ATA------------------------TTAAAA--------------ATTT--AGTTATATTCCCCAAATAAAACta
gi|11 : ATGGCAC----TTGTATG---GTTTATGTTAA---AGAGGT-GTC-AG------------GT--------TTATCTTTGTACAACGCT--A-ATGT-TC-TG-GGGAA-TCAGTTGGTAAATTCTGGACAGTGTCCA-GGGAGAGGAAGCATTGACTGCATGCTGTGATAAG----------GG-CTGCT-AATTTTGATACATGATATTCTGCTGGGCGTATGCTGG-TG-AATCTG---A-GTG---CGAGACAGTTAGAAAACTGATTTCCA-CTGAACAATATT----ATTATTA------C--CTCTCT-----CTA--T------ATA-A---A-AT-TGTGAAATATATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTTCCAAAac
gi|12 : GTTGTATATTGATA-A-AACA-TAT---CACT---CTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGAAGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-CTGTGTT-TG-GGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCAGGCTGTGATAAG-AATTG-AAGAA-TTGCT-ATTGTTTATGCATGATA---TGATGGAAGGATGCTGG-TG-AGTCTG---T-GTG-C---AAGCAGTTAGAAAACTGATTTCGA-TTAAACAACATCTAATATTATTA------C--CTTT
gi|13 : GAAAGTGGCAA-GGGAGAGAAAGCATTGACAGCATGCTGTAAAAAG----------GG-TTGTG-GTTGTTGATACATGATA---TGCTCGGAGTATGCTGT-TG-ACTCTG---A-GTG---CAAGGGAGTTAGAAAACTGATTTTG------ACAACATCTAAAATTATTA------C--CTTTCT-----A----T------ATATATATA-AT-TGTGAAATAAAAAGTTAAt
gi|14 : ctttagtatagttggttacaatgaaaatatagttggttacaatgaaattCAGCATGCTGTGATAAG-AAATA-ACGAA-TTGCT-ATTGTTTATACATGATA---TGCTGGGAGTATGCTTG-TG-AGTCTG---A-GTG-C-AAAGTTAGTAAGAAAATTAATTTCGA-CCGAATAAGATCTAAAATCATTA------C--CTCTCT-----C----T------TTA-A---A-AT-TGTTAAGTAACTTTTTAAAAACCA--AATAACTTATTTTGAGTTATATTCCCCAAATATAACtcagagtgcaaaccat
gi|15 : A-TTGTTTATTGTACATGTATGATG---TAC-------ATGTGGG-TT-A---TG-----GCG-TACGAAACAGTAAGAAAACGGATTTATG-CAGAACAGTATCTCAAACTATTA------T--CTCTCTA----CA---C------ATA-A---A-ATGTGTGAAAGAAATAATTAAA--TAA--AAGAACATATTTC-AGTTATAT
gi|16 : gataaaactatcaacctatgaaactatggtacaG-TG-ACCCCA---A-TTG-C--GAGACAGTTAGAAAACTGATTCTGG-CAGAACAACATTTAAAAGTATTA------T--CTACCT-----C----TATTCACATA-A---A-AT-TGTGAAATAAAT--------------AGAAACTTATTTCGAATTACATTCCCCAAATATTAC
gi|17 : aagaaatgatggagtcTATGTTGG-TATAAT-TGTACATATG-C---AGGCATATAGAAAACTGTTTTCTG-CCGAACAGTATCC-----------------------CT-----C----T------ACA-C---ATATGTGTGAAATAAATAATTACA--CAA--AGGAACTTATTTC-AGATATATTTCCTAAGTAagaaaattccttcaact
gi|18 : GTTGAATATTTACA-A-AACA-TAT---TG------TTGTACTATGGCAC----TTGTATG---ATTTATGTT
gi|2 : TGTTGTATATTGACA-A-A-TG-TAT---TACT---TTTGTACTATGGAAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTCAT----CAGGT---CT-TGTTATCTTTGTATAAAATT--A-ATGTGTT-TG-AGG-G-TCAGTTGGTCAGCTCCGGACAGCGTCCA-GCGAGGGGAAGCGTTGACAGCATGCTGAGATAAGAAA-TG-AC-GATTTGCT-ATTGTTTATACATGATA---TGCTGGGAGTTTGCTTG-TG-AGTCTG---A-GTG-C-CAAGTTAGTTAGAAAATCGATTTCGA-CCGAACAAGATCTAAAATTATTA------C--CTCTGT-----C----T------ATA-A---A-AT-TGTAAAATAAATATTTAAAAACAA--AAGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|3 : GTTGTGTATTAACATA-A-CA-TAT---TAAT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTAGAT----CAGGT---CT-TGTTTTCTTTGTAAAATGTT--A-ATGTGTT-TG-GGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-AATAAAGAAAGCGCTGACAACATACTGTGATTAG-AATTGTA--GACTTGCT-ATTATTTATACA--ATA---CGCTGGGGGTATGCTGGTTG---TCGG---A-GTG-C---AAGCAGTTAGAAAACTGATTTTAA-CCGAACAATATGTAAAAGTATTG------C--CTTTCT-----A----TATATTAATA-A---A-AG-TGTGAAATAAATAGTTAAAAACAA--AAAAACCTATTTTGAGTAATATTCCCCAAATA
gi|4 : TTGTATATTGACG-ATA-CA-TGT---TGTT---TTTGTACTATGGTAT----TTGT--G---ATTTATGTTAA---AGGCGT-GTCTGGTTGAT----CAAGT---AT-TGATATATTTGTGCAATGCT--A-CCGT-TC-TG-ATG-ACTCAGTTGGTCAGTTCTGGACAGTGTTCA-GGGAGAGAAATCGTTGACAGCATGCTGGGATACG-A---------A-TTGCT-ATTGTTGATACATGATA---CGCTGGGAGTATGCTGG-TG-AGTCTG---A-GTG---CGAGGCAGTTAAAAAACTGATTTCGG-CAGA--AACATCTAGAATTATTA------T--CTCTCT-----C----T------CTA-T---A-TT-TGTa
gi|5 : TTGTATATTGACA-ATA-TA-TGT---TATA---TTTGCACTAGGGCAC----TTGTATG---ACTTATGTTAA---AAAGCT-GTC-AGTTGAT----CAGGT---CTGTGTTATCTTTGAATAATGCT--T-ATGTTAT-TG-AGA-G-TCAGTTGGTCAGTTCTGGACAGTCTCCA-GGGAGAGAAAGCGTTGACAGAATGTTGTGATAAG----------GG-TTGTT-ATTGTCGATACATGATC---TGCCGGGAGTATGCTGA-TG-AATCTG---G-GTG---CGAAGCAGTTATAGCACTGATTTCGT-CAGGACAAGACCTACAACTATTA------C--GTCTTTATATAT----T------ATA-A---A-GT-TGTGATATAAATA-TTAAACAAGA--GGGAAATTA-TTTGAGTTATATTCTCTAACTATttaggttataaatcccaaatataacaaaatttttacgttgaatttatattacataatttatattaac
gi|6 : GTTTTATATTGACA-A-A-AAATAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATTATAA---AGACGT-GTC-AGTTGAT----CATAT---CT-TGTTTTCTTTGTATAATGTT--A-ATGT-----------G-TCAGTTGGTCAGCTCTGGACAGTGTCCATGGGAGAGAAAGTGTTGACAGCATGCTGTGATAAG-AATTG-AAGAA-TTGCT-GTTGTTTAAACATGATA---TGCTGAAAGTATACTGG-TG-AATCTG-----GTGTT-TGAGTCACC---AAA--------CGA-CCGAACAATATCTAAAATTATTA------C--CTCTCT-----CTCTAT------ATA-A---A-CT-TGTGAAATAAATAGTTAAAAATAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|7 : GTTGTATATTGGCA-ATA-CT-TGT---TATC---TTTGTACTATAGCAC----TTGTATG---ATTTATGTTAA---AGAGGT-GCC-CGTTGAT----CGGGT---ATATGTAATCTTTGTACTATCCT--T-ATGT-TG-TG-GGGAG-TCAGTTGGTCAGTTCTGGACAG------------------CGCTGGCAGTATGCTGTGATAAG-G--------GA-TT-CT-GTTGTTGATACATAATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG---CGGGGCAGTTCGAAAACTGATATCGG-CAGAACAAGATCTGAAATTATTT------C--CTCTCTATATAT----T------ATA-A---A-AC-TGTG-AATACAGAGTT-AAAACAATTAAAAACTTAGATTGAGTAATATTCCCGAAATATAA
gi|8 : GTTGGATATTGACA-A-A-CA-TAT---TACTACTCTTGTACTATGGCAC----TTGTATG---ATTTATGTTAC---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-ATGTGTT-TG-GGA-G-TCAGTTGTTCAGCTTTGGA-GGCGTCCA-GGGAGAGAAAGCATTGACAGCATGCTGTGATAAG-AATTG-AAGAA-TTACT-ATTGTTTATAC-----A---TGC------TATGCTGG-TG-AATTTG---A-GTG-C---AAACAGTTAGAATACTGATTTCGA-CAGAACATCATCTAAAATTATTA------CCTCTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTCAAAACAA--AGGGACTTATTCT
gi|9 : GTATATAGA-A-A-A-CA-TATCATTATT---TTTGTACTATG----------------------------------ACGT-GTC-AGTTTAT----CAAGT---CT-TGTTTTCTTTGTACAATGCT--A-ATGTGTT-TG-GGA-G-TCAGTTTGTCAGCTCTGGACAGTGCCCA-GAGAGATAAAGCATTCAAAGCATGCTGTGATAAG-A---------A-TTGCT-ATTGTTGATACATGATA---TGCTGGTAGTATGCTGT-TG-AATCTG---A-ATG-C---AAGCAGTTAGAAAACTGATTTCGACCGGAACAACATCTGAAATTGTAA------C--CTCTCT-----A----T------ATA-A---A-AA-AGTGAAATAAATAGCT-AAATCAA--ATGAACTTATTTTGAGAGATATTCCACAAATATAACccaaata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AATTATGAAACACAAAGTAAACAAACCAGAAACTTGTTATAAAAG
Alignments
lowQualScore : 111 111 1 11 7777777777 22222 33333333333333333
lowQualScore : 3 111 3 000 2 555 6666 555 555 1 3 3 7777 555 6 1 44 3 2 3 3 00 3 3 3333333333 5 2 1 444 1 2 2 1 55555 66666 33 1 2 666666 33 00000000000000000 2 444 2 5 2 0 22 33 1
lowQualScore : . ... . ... . ... .... ... ... . . . .... ... . . .. . . . . .. . . .......... . . . ... . . . . ..... ..... .. . . ...... .. ................. . ... . . . . .. .. .
lowQualScore : 3 000 3 444 9 888 5555 444 888 8 3 3 1111 888 7 8 66 3 9 3 3 11 3 1 1111111111 3 7 0 777 8 4 4 6 66666 99999 11 8 1 888888 22 22222222222222222 5 444 5 0 1 7 99 99 0
consensus : TGTTGTATATTGACA-A-A-CA-TAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-GGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
Reference ( family-1055 ) : TGTTGTATATTGACA-A-A-CA-TAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-GGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|1 : ATATTAA-A-G-A-TA-TATAG-TACT---AT-GTGTT-TAGCAAGTTATCGTATGTGCATTTA-ATTAATTCAGCTGTTGTA-GATTGATAAAACATGTTACCT-TTTCACTTTTGCACA-TGTTTGATATATGTTATG-AGGTG-TTAGTTGGTTAGGTCTGGATAGTGTCCA-GAAAGAGAAGGTGCGGTAAGTATA---TGGTACG----------GG-TTGCT-ATTGTTAATAAATGATA---TGCTGGGAAATTGATGG-TG-AATCTA---A-GTG-C--AAGGTAGTTAGAAAACCAATTTCGG-CAGAACAACATTTAATGTTATTATCTCTCT--CTCTCT-----C----T------GTA-A---A-AT-TGTGAAATAAATAG-TAAAAACAA--AGGAAGTTA-TTTGAGTTATATTCCC--AATTTAA
gi|10 : gtaTGTTTTATATTGACA-A-AACA-TGT---TATT---TTTGTACTATGGCAT----TTGTATG------TATGTTAA---AGAGGT-GTC-AGTTGAT----CAGGT---TT-TGTTATCTTTGTACAATGCT--A-ATGT-TC-TGTGGA-G-TCAGTTGGTCAGTTCTGGACAGTATCCA-GGGAGAGAAAGCGTCGACAACATGCTGTGATAAG----------GG-TTGCT-ATTGTTGGTAC-----A---TGC------TATGCTGG-TA-AATCTG---A-GTG-C-AG-GGCAGTTAT-ATACTGATTTCGA-CCGACCAAAGTCTAAAATTATTT------C--CTCTCT-----T----T------ATA------------------------TTAAAA--------------ATTT--AGTTATATTCCCCAAATAAAACta
gi|11 : ATGGCAC----TTGTATG---GTTTATGTTAA---AGAGGT-GTC-AG------------GT--------TTATCTTTGTACAACGCT--A-ATGT-TC-TG-GGGAA-TCAGTTGGTAAATTCTGGACAGTGTCCA-GGGAGAGGAAGCATTGACTGCATGCTGTGATAAG----------GG-CTGCT-AATTTTGATACATGATATTCTGCTGGGCGTATGCTGG-TG-AATCTG---A-GTG---CGAGACAGTTAGAAAACTGATTTCCA-CTGAACAATATT----ATTATTA------C--CTCTCT-----CTA--T------ATA-A---A-AT-TGTGAAATATATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTTCCAAAac
gi|12 : GTTGTATATTGATA-A-AACA-TAT---CACT---CTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGAAGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-CTGTGTT-TG-GGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCAGGCTGTGATAAG-AATTG-AAGAA-TTGCT-ATTGTTTATGCATGATA---TGATGGAAGGATGCTGG-TG-AGTCTG---T-GTG-C---AAGCAGTTAGAAAACTGATTTCGA-TTAAACAACATCTAATATTATTA------C--CTTT
gi|13 : GAAAGTGGCAA-GGGAGAGAAAGCATTGACAGCATGCTGTAAAAAG----------GG-TTGTG-GTTGTTGATACATGATA---TGCTCGGAGTATGCTGT-TG-ACTCTG---A-GTG---CAAGGGAGTTAGAAAACTGATTTTG------ACAACATCTAAAATTATTA------C--CTTTCT-----A----T------ATATATATA-AT-TGTGAAATAAAAAGTTAAt
gi|14 : ctttagtatagttggttacaatgaaaatatagttggttacaatgaaattCAGCATGCTGTGATAAG-AAATA-ACGAA-TTGCT-ATTGTTTATACATGATA---TGCTGGGAGTATGCTTG-TG-AGTCTG---A-GTG-C-AAAGTTAGTAAGAAAATTAATTTCGA-CCGAATAAGATCTAAAATCATTA------C--CTCTCT-----C----T------TTA-A---A-AT-TGTTAAGTAACTTTTTAAAAACCA--AATAACTTATTTTGAGTTATATTCCCCAAATATAACtcagagtgcaaaccat
gi|15 : A-TTGTTTATTGTACATGTATGATG---TAC-------ATGTGGG-TT-A---TG-----GCG-TACGAAACAGTAAGAAAACGGATTTATG-CAGAACAGTATCTCAAACTATTA------T--CTCTCTA----CA---C------ATA-A---A-ATGTGTGAAAGAAATAATTAAA--TAA--AAGAACATATTTC-AGTTATAT
gi|16 : gataaaactatcaacctatgaaactatggtacaG-TG-ACCCCA---A-TTG-C--GAGACAGTTAGAAAACTGATTCTGG-CAGAACAACATTTAAAAGTATTA------T--CTACCT-----C----TATTCACATA-A---A-AT-TGTGAAATAAAT--------------AGAAACTTATTTCGAATTACATTCCCCAAATATTAC
gi|17 : aagaaatgatggagtcTATGTTGG-TATAAT-TGTACATATG-C---AGGCATATAGAAAACTGTTTTCTG-CCGAACAGTATCC-----------------------CT-----C----T------ACA-C---ATATGTGTGAAATAAATAATTACA--CAA--AGGAACTTATTTC-AGATATATTTCCTAAGTAagaaaattccttcaact
gi|18 : GTTGAATATTTACA-A-AACA-TAT---TG------TTGTACTATGGCAC----TTGTATG---ATTTATGTT
gi|2 : TGTTGTATATTGACA-A-A-TG-TAT---TACT---TTTGTACTATGGAAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTCAT----CAGGT---CT-TGTTATCTTTGTATAAAATT--A-ATGTGTT-TG-AGG-G-TCAGTTGGTCAGCTCCGGACAGCGTCCA-GCGAGGGGAAGCGTTGACAGCATGCTGAGATAAGAAA-TG-AC-GATTTGCT-ATTGTTTATACATGATA---TGCTGGGAGTTTGCTTG-TG-AGTCTG---A-GTG-C-CAAGTTAGTTAGAAAATCGATTTCGA-CCGAACAAGATCTAAAATTATTA------C--CTCTGT-----C----T------ATA-A---A-AT-TGTAAAATAAATATTTAAAAACAA--AAGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|3 : GTTGTGTATTAACATA-A-CA-TAT---TAAT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTAGAT----CAGGT---CT-TGTTTTCTTTGTAAAATGTT--A-ATGTGTT-TG-GGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-AATAAAGAAAGCGCTGACAACATACTGTGATTAG-AATTGTA--GACTTGCT-ATTATTTATACA--ATA---CGCTGGGGGTATGCTGGTTG---TCGG---A-GTG-C---AAGCAGTTAGAAAACTGATTTTAA-CCGAACAATATGTAAAAGTATTG------C--CTTTCT-----A----TATATTAATA-A---A-AG-TGTGAAATAAATAGTTAAAAACAA--AAAAACCTATTTTGAGTAATATTCCCCAAATA
gi|4 : TTGTATATTGACG-ATA-CA-TGT---TGTT---TTTGTACTATGGTAT----TTGT--G---ATTTATGTTAA---AGGCGT-GTCTGGTTGAT----CAAGT---AT-TGATATATTTGTGCAATGCT--A-CCGT-TC-TG-ATG-ACTCAGTTGGTCAGTTCTGGACAGTGTTCA-GGGAGAGAAATCGTTGACAGCATGCTGGGATACG-A---------A-TTGCT-ATTGTTGATACATGATA---CGCTGGGAGTATGCTGG-TG-AGTCTG---A-GTG---CGAGGCAGTTAAAAAACTGATTTCGG-CAGA--AACATCTAGAATTATTA------T--CTCTCT-----C----T------CTA-T---A-TT-TGTa
gi|5 : TTGTATATTGACA-ATA-TA-TGT---TATA---TTTGCACTAGGGCAC----TTGTATG---ACTTATGTTAA---AAAGCT-GTC-AGTTGAT----CAGGT---CTGTGTTATCTTTGAATAATGCT--T-ATGTTAT-TG-AGA-G-TCAGTTGGTCAGTTCTGGACAGTCTCCA-GGGAGAGAAAGCGTTGACAGAATGTTGTGATAAG----------GG-TTGTT-ATTGTCGATACATGATC---TGCCGGGAGTATGCTGA-TG-AATCTG---G-GTG---CGAAGCAGTTATAGCACTGATTTCGT-CAGGACAAGACCTACAACTATTA------C--GTCTTTATATAT----T------ATA-A---A-GT-TGTGATATAAATA-TTAAACAAGA--GGGAAATTA-TTTGAGTTATATTCTCTAACTATttaggttataaatcccaaatataacaaaatttttacgttgaatttatattacataatttatattaac
gi|6 : GTTTTATATTGACA-A-A-AAATAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATTATAA---AGACGT-GTC-AGTTGAT----CATAT---CT-TGTTTTCTTTGTATAATGTT--A-ATGT-----------G-TCAGTTGGTCAGCTCTGGACAGTGTCCATGGGAGAGAAAGTGTTGACAGCATGCTGTGATAAG-AATTG-AAGAA-TTGCT-GTTGTTTAAACATGATA---TGCTGAAAGTATACTGG-TG-AATCTG-----GTGTT-TGAGTCACC---AAA--------CGA-CCGAACAATATCTAAAATTATTA------C--CTCTCT-----CTCTAT------ATA-A---A-CT-TGTGAAATAAATAGTTAAAAATAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|7 : GTTGTATATTGGCA-ATA-CT-TGT---TATC---TTTGTACTATAGCAC----TTGTATG---ATTTATGTTAA---AGAGGT-GCC-CGTTGAT----CGGGT---ATATGTAATCTTTGTACTATCCT--T-ATGT-TG-TG-GGGAG-TCAGTTGGTCAGTTCTGGACAG------------------CGCTGGCAGTATGCTGTGATAAG-G--------GA-TT-CT-GTTGTTGATACATAATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG---CGGGGCAGTTCGAAAACTGATATCGG-CAGAACAAGATCTGAAATTATTT------C--CTCTCTATATAT----T------ATA-A---A-AC-TGTG-AATACAGAGTT-AAAACAATTAAAAACTTAGATTGAGTAATATTCCCGAAATATAA
gi|8 : GTTGGATATTGACA-A-A-CA-TAT---TACTACTCTTGTACTATGGCAC----TTGTATG---ATTTATGTTAC---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-ATGTGTT-TG-GGA-G-TCAGTTGTTCAGCTTTGGA-GGCGTCCA-GGGAGAGAAAGCATTGACAGCATGCTGTGATAAG-AATTG-AAGAA-TTACT-ATTGTTTATAC-----A---TGC------TATGCTGG-TG-AATTTG---A-GTG-C---AAACAGTTAGAATACTGATTTCGA-CAGAACATCATCTAAAATTATTA------CCTCTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTCAAAACAA--AGGGACTTATTCT
gi|9 : GTATATAGA-A-A-A-CA-TATCATTATT---TTTGTACTATG----------------------------------ACGT-GTC-AGTTTAT----CAAGT---CT-TGTTTTCTTTGTACAATGCT--A-ATGTGTT-TG-GGA-G-TCAGTTTGTCAGCTCTGGACAGTGCCCA-GAGAGATAAAGCATTCAAAGCATGCTGTGATAAG-A---------A-TTGCT-ATTGTTGATACATGATA---TGCTGGTAGTATGCTGT-TG-AATCTG---A-ATG-C---AAGCAGTTAGAAAACTGATTTCGACCGGAACAACATCTGAAATTGTAA------C--CTCTCT-----A----T------ATA-A---A-AA-AGTGAAATAAATAGCT-AAATCAA--ATGAACTTATTTTGAGAGATATTCCACAAATATAACccaaata
blockSeqs : T AA A CAT T ACT . . . G . T . . G A . . G . T GA C T AATTGAAG T T G TTC T T T A TACAT TACG AC C A . CT CTATTCAC T TAT T G G AA TT C
blockSeqs : . AA . . C . . . . G . . . . A A . . G . . GA . . AAATAACG C . G . T . . A A TTTG A T T . . ATATATTA . . . G G AA . A
blockSeqs : . AA . . C . . . . A . . . . . T . . G . . A . . AATTGAAG . . T . T . . G A CAG A T C . . ATATATT . . . . T AA . C
blockSeqs : . TA . . A . . . . C . . . . . A . . T . . A . . AATTGAAG . . G . T . . C T CAA A C C . . ATATATT . . . . A AA . C
blockSeqs : . TA . . T . . . . C . . . . . T . . G . . G . . AAATGAC . . T . T . . G A CCA A A G . . CTCTAT . . . . A CA . T
blockSeqs : . TA . . T . . . . C . . . . . A . . G . . A . . AATTGTA . . C . T . . C A CG G A T . . CTAT . . . . T AA . C
blockSeqs : . A . . C . . . . G . . . . . A . . . . . G . . A . . T . T . . A A CA G C C . . ACAC . . . . G AA . C
blockSeqs : . A . . T . . . . C . . . . . T . . . . . A . . G . . T . C . . G A CG G C T . . TT . . . . G AA . T
blockSeqs : . A . . C . . . . G . . . . . A . . . . . A . . A . . G . T . . G A CG A C G . . AT . . . . G AT . C
blockSeqs : . A . . T . . . . C . . . . . T . . . . . A . . . . . G . T . . A A CG A A T . . CT . . . . G A . G
blockSeqs : . A . . . . . . . C . . . . . T . . . . . . . . . . . T . T . . A G CG G A C . . CT . . . . G . . C
blockSeqs : . . . . . . G . . . . A A C T C G . . CT . . . . . . .
blockSeqs : . . . T . . . . A A C A A T . . CT . . . . . . .
blockSeqs : . . G . . . . A A C G A G . . CT . . . . .
blockSeqs : . . . . C A G C . . AT . . . .
blockSeqs : . . . . C . . C . .
blockSeqCons : NA* *** **** *** *** **** *** ** A* ******
originalCons : TGTTGTATATTGACA-A-A-CA-TAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-GGG-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
finalCons : TGTTGTATATTGACA-ANA-CA-TAT---TACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-GGA-G-TCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAG-AA-TG-A--GA-TTGCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AATTATGAAACACAAAGTAAACAAACCAGAAACTTGTTATAAAAG
Alignments
lowQualScore : 777777777 22222 33333333333333333
lowQualScore : 7 3 2 555 6666 555 555 1 3 3 7777 555 6 1 44 3 8 3 6 3 3 333333333 2 2 2 1 444 1 2 2 1 55555 66666 33 1 2 666666 33 00000000000000000 2 444 2 5 2 0 22 33 1
lowQualScore : . . . ... .... ... ... . . . .... ... . . .. . . . . . . ......... . . . . ... . . . . ..... ..... .. . . ...... .. ................. . ... . . . . .. .. .
lowQualScore : 5 3 9 888 5555 444 888 8 3 3 1111 888 7 8 66 3 8 3 7 3 1 111111111 7 7 7 0 777 8 4 4 6 66666 99999 11 8 1 888888 22 22222222222222222 5 444 5 0 1 7 99 99 0
consensus : TGTTGTATATTGACAANACAT-ATTACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-G-GAGTCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAGAA-TG-A--GA-TT-GCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
Reference ( family-1055 ) : TGTTGTATATTGACAANACAT-ATTACT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTATCTTTGTACAATGCT--A-ATGTGTT-TG-G-GAGTCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCATGCTGTGATAAGAA-TG-A--GA-TT-GCT-ATTGTTNATACATGATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG-C-CGAGGCAGTTAGAAAACTGATTTCGA-CNGAACAACATCTAAAATTATTA------C--CTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|1 : ATATTAAAGATATAT-AGTACT---AT-GTGTT-TAGCAAGTTATCGTATGTGCATTTA-ATTAATTCAGCTGTTGTA-GATTGATAAAACATGTTACCT-TTTCACTTTTGCACA-TGTTTGATATATGTTATGAG-GTGTTAGTTGGTTAGGTCTGGATAGTGTCCA-GAAAGAGAAGGTGCGGTAAGTATA---TGGTACG---------GG-TT-GCT-ATTGTTAATAAATGATA---TGCTGGGAAATTGATGG-TG-AATCTA---A-GTG-C--AAGGTAGTTAGAAAACCAATTTCGG-CAGAACAACATTTAATGTTATTATCTCTCT--CTCTCT-----C----T------GTA-A---A-AT-TGTGAAATAAATAG-TAAAAACAA--AGGAAGTTA-TTTGAGTTATATTCCC--AATTTAA
gi|10 : gtaTGTTTTATATTGACAAAACAT-GTTATT---TTTGTACTATGGCAT----TTGTATG------TATGTTAA---AGAGGT-GTC-AGTTGAT----CAGGT---TT-TGTTATCTTTGTACAATGCT--A-ATGT-TC-TGTG-GAGTCAGTTGGTCAGTTCTGGACAGTATCCA-GGGAGAGAAAGCGTCGACAACATGCTGTGATAAG---------GG-TT-GCT-ATTGTTGGTAC-----A---TGC------TATGCTGG-TA-AATCTG---A-GTG-C-AG-GGCAGTTAT-ATACTGATTTCGA-CCGACCAAAGTCTAAAATTATTT------C--CTCTCT-----T----T------ATA------------------------TTAAAA--------------ATTT--AGTTATATTCCCCAAATAAAACta
gi|11 : ATGGCAC----TTGTATG---GTTTATGTTAA---AGAGGT-GTC-AG------------GT--------TTATCTTTGTACAACGCT--A-ATGTTCT-GG-G-GAATCAGTTGGTAAATTCTGGACAGTGTCCA-GGGAGAGGAAGCATTGACTGCATGCTGTGATAAG---------GG-CT-GCT-AATTTTGATACATGATATTCTGCTGGGCGTATGCTGG-TG-AATCTG---A-GTG---CGAGACAGTTAGAAAACTGATTTCCA-CTGAACAATATT----ATTATTA------C--CTCTCT-----CTA--T------ATA-A---A-AT-TGTGAAATATATAGTTAAAAACAA--AGGAACTTATTTTGAGTTATATTTCCAAAac
gi|12 : GTTGTATATTGATAAAACAT-ATCACT---CTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGAAGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-CTGTGTT-TG-G-GAGTCAGTTGGTCAGCTCTGGACAGTGTCCA-GGGAGAGAAAGCGTTGACAGCAGGCTGTGATAAGAATTG-AAGAA-TT-GCT-ATTGTTTATGCATGATA---TGATGGAAGGATGCTGG-TG-AGTCTG---T-GTG-C---AAGCAGTTAGAAAACTGATTTCGA-TTAAACAACATCTAATATTATTA------C--CTTT
gi|13 : GAAAGTGGCAA-GGGAGAGAAAGCATTGACAGCATGCTGTAAAAAG---------GG-TT-GTG-GTTGTTGATACATGATA---TGCTCGGAGTATGCTGT-TG-ACTCTG---A-GTG---CAAGGGAGTTAGAAAACTGATTTTG------ACAACATCTAAAATTATTA------C--CTTTCT-----A----T------ATATATATA-AT-TGTGAAATAAAAAGTTAAt
gi|14 : ctttagtatagttggttacaatgaaaatatagttggttacaatgaaattCAGCATGCTGTGATAAGAAATA-ACGAA-TT-GCT-ATTGTTTATACATGATA---TGCTGGGAGTATGCTTG-TG-AGTCTG---A-GTG-C-AAAGTTAGTAAGAAAATTAATTTCGA-CCGAATAAGATCTAAAATCATTA------C--CTCTCT-----C----T------TTA-A---A-AT-TGTTAAGTAACTTTTTAAAAACCA--AATAACTTATTTTGAGTTATATTCCCCAAATATAACtcagagtgcaaaccat
gi|15 : A-TT-GTTTATTGTACATGTATGATG---TAC-------ATGTGGG-TT-A---TG-----GCG-TACGAAACAGTAAGAAAACGGATTTATG-CAGAACAGTATCTCAAACTATTA------T--CTCTCTA----CA---C------ATA-A---A-ATGTGTGAAAGAAATAATTAAA--TAA--AAGAACATATTTC-AGTTATAT
gi|16 : gataaaactatcaacctatgaaactatggtacaG-TG-ACCCCA---A-TTG-C--GAGACAGTTAGAAAACTGATTCTGG-CAGAACAACATTTAAAAGTATTA------T--CTACCT-----C----TATTCACATA-A---A-AT-TGTGAAATAAAT--------------AGAAACTTATTTCGAATTACATTCCCCAAATATTAC
gi|17 : aagaaatgatggagtcTATGTTGG-TATAAT-TGTACATATG-C---AGGCATATAGAAAACTGTTTTCTG-CCGAACAGTATCC-----------------------CT-----C----T------ACA-C---ATATGTGTGAAATAAATAATTACA--CAA--AGGAACTTATTTC-AGATATATTTCCTAAGTAagaaaattccttcaact
gi|18 : GTTGAATATTTACAAAACAT-ATTG------TTGTACTATGGCAC----TTGTATG---ATTTATGTT
gi|2 : TGTTGTATATTGACAA-ATGT-ATTACT---TTTGTACTATGGAAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTTCAT----CAGGT---CT-TGTTATCTTTGTATAAAATT--A-ATGTGTT-TG-A-GGGTCAGTTGGTCAGCTCCGGACAGCGTCCA-GCGAGGGGAAGCGTTGACAGCATGCTGAGATAAGAAATG-AC-GA-TTTGCT-ATTGTTTATACATGATA---TGCTGGGAGTTTGCTTG-TG-AGTCTG---A-GTG-C-CAAGTTAGTTAGAAAATCGATTTCGA-CCGAACAAGATCTAAAATTATTA------C--CTCTGT-----C----T------ATA-A---A-AT-TGTAAAATAAATATTTAAAAACAA--AAGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|3 : GTTGTGTATTAACATAACAT-ATTAAT---TTTGTACTATGGCAC----TTGTATG---ATTTATGTTAA---AGACGT-GTC-AGTAGAT----CAGGT---CT-TGTTTTCTTTGTAAAATGTT--A-ATGTGTT-TG-G-GAGTCAGTTGGTCAGCTCTGGACAGTGTCCA-AATAAAGAAAGCGCTGACAACATACTGTGATTAGAATTGTA--GACTT-GCT-ATTATTTATACA--ATA---CGCTGGGGGTATGCTGGTTG---TCGG---A-GTG-C---AAGCAGTTAGAAAACTGATTTTAA-CCGAACAATATGTAAAAGTATTG------C--CTTTCT-----A----TATATTAATA-A---A-AG-TGTGAAATAAATAGTTAAAAACAA--AAAAACCTATTTTGAGTAATATTCCCCAAATA
gi|4 : TTGTATATTGACGATACAT-GTTGTT---TTTGTACTATGGTAT----TTGT--G---ATTTATGTTAA---AGGCGT-GTCTGGTTGAT----CAAGT---AT-TGATATATTTGTGCAATGCT--A-CCGT-TC-TG-ATGACTCAGTTGGTCAGTTCTGGACAGTGTTCA-GGGAGAGAAATCGTTGACAGCATGCTGGGATACGA---------A-TT-GCT-ATTGTTGATACATGATA---CGCTGGGAGTATGCTGG-TG-AGTCTG---A-GTG---CGAGGCAGTTAAAAAACTGATTTCGG-CAGA--AACATCTAGAATTATTA------T--CTCTCT-----C----T------CTA-T---A-TT-TGTa
gi|5 : TTGTATATTGACAATATAT-GTTATA---TTTGCACTAGGGCAC----TTGTATG---ACTTATGTTAA---AAAGCT-GTC-AGTTGAT----CAGGT---CTGTGTTATCTTTGAATAATGCT--T-ATGTTAT-TG-A-GAGTCAGTTGGTCAGTTCTGGACAGTCTCCA-GGGAGAGAAAGCGTTGACAGAATGTTGTGATAAG---------GG-TT-GTT-ATTGTCGATACATGATC---TGCCGGGAGTATGCTGA-TG-AATCTG---G-GTG---CGAAGCAGTTATAGCACTGATTTCGT-CAGGACAAGACCTACAACTATTA------C--GTCTTTATATAT----T------ATA-A---A-GT-TGTGATATAAATA-TTAAACAAGA--GGGAAATTA-TTTGAGTTATATTCTCTAACTATttaggttataaatcccaaatataacaaaatttttacgttgaatttatattacataatttatattaac
gi|6 : GTTTTATATTGACAAAAAAT-ATTACT---TTTGTACTATGGCAC----TTGTATG---ATTTATTATAA---AGACGT-GTC-AGTTGAT----CATAT---CT-TGTTTTCTTTGTATAATGTT--A-ATGT-----------GTCAGTTGGTCAGCTCTGGACAGTGTCCATGGGAGAGAAAGTGTTGACAGCATGCTGTGATAAGAATTG-AAGAA-TT-GCT-GTTGTTTAAACATGATA---TGCTGAAAGTATACTGG-TG-AATCTG-----GTGTT-TGAGTCACC---AAA--------CGA-CCGAACAATATCTAAAATTATTA------C--CTCTCT-----CTCTAT------ATA-A---A-CT-TGTGAAATAAATAGTTAAAAATAA--AGGAACTTATTTTGAGTTATATTCCCCAAATATAAC
gi|7 : GTTGTATATTGGCAATACTT-GTTATC---TTTGTACTATAGCAC----TTGTATG---ATTTATGTTAA---AGAGGT-GCC-CGTTGAT----CGGGT---ATATGTAATCTTTGTACTATCCT--T-ATGTTGT-GG-G-GAGTCAGTTGGTCAGTTCTGGACAG------------------CGCTGGCAGTATGCTGTGATAAGG--------GA-TT--CT-GTTGTTGATACATAATA---TGCTGGGAGTATGCTGG-TG-AATCTG---A-GTG---CGGGGCAGTTCGAAAACTGATATCGG-CAGAACAAGATCTGAAATTATTT------C--CTCTCTATATAT----T------ATA-A---A-AC-TGTG-AATACAGAGTT-AAAACAATTAAAAACTTAGATTGAGTAATATTCCCGAAATATAA
gi|8 : GTTGGATATTGACAA-ACAT-ATTACTACTCTTGTACTATGGCAC----TTGTATG---ATTTATGTTAC---AGACGT-GTC-AGTTGAT----CAGGT---CT-TGTTTTCTTTGTACAATATT--A-ATGTGTT-TG-G-GAGTCAGTTGTTCAGCTTTGGA-GGCGTCCA-GGGAGAGAAAGCATTGACAGCATGCTGTGATAAGAATTG-AAGAA-TT-ACT-ATTGTTTATAC-----A---TGC------TATGCTGG-TG-AATTTG---A-GTG-C---AAACAGTTAGAATACTGATTTCGA-CAGAACATCATCTAAAATTATTA------CCTCTCTCT-----C----T------ATA-A---A-AT-TGTGAAATAAATAGTTCAAAACAA--AGGGACTTATTCT
gi|9 : GTATATAGAAAACATATCATTATT---TTTGTACTATG----------------------------------ACGT-GTC-AGTTTAT----CAAGT---CT-TGTTTTCTTTGTACAATGCT--A-ATGTGTT-TG-G-GAGTCAGTTTGTCAGCTCTGGACAGTGCCCA-GAGAGATAAAGCATTCAAAGCATGCTGTGATAAGA---------A-TT-GCT-ATTGTTGATACATGATA---TGCTGGTAGTATGCTGT-TG-AATCTG---A-ATG-C---AAGCAGTTAGAAAACTGATTTCGACCGGAACAACATCTGAAATTGTAA------C--CTCTCT-----A----T------ATA-A---A-AA-AGTGAAATAAATAGCT-AAATCAA--ATGAACTTATTTTGAGAGATATTCCACAAATATAACccaaata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AATTATGAAACACAAAGTAAACAAACCAGAAACTTGTTATAAAAG