lowQualScore : 33333333333333333333
lowQualScore : 22222222 1111111111111111111 1 88888888888888888888888 1 22 111111 1 1111 1 2222222222 11 666666666666666666666666666666666 1 33333333 1 222222222 222 22222222222222222222 1 333333333 4 2 22 66666
lowQualScore : 3 5 44444444 2 9999999999999999999 7 5 777 1 8 5 55555555555555555555555 888 0 5 0 55 1 77 5 55 11 1 555555 6 888 2 999 0 7 3 6 2 7 2 8 0 0 7 4444 66 5 3 0 6 5555555555 1 5 8 5 5 1 0 11 3 444444444444444444444444444444444 0 6 1 1 2 2 11111111 0 0 333333333 888 9 6 4 2 55555555555555555555 0 777777777 6 0 0 11 44444 4 6 3 3 6
lowQualScore : . . ........ . ................... . . ... . . . ....................... ... . . . .. . .. . .. .. . ...... . ... . ... . . . . . . . . . . . .... .. . . . . .......... . . . . . . . .. . ................................. . . . . . . ........ . . ......... ... . . . . .................... . ......... . . . .. ..... . . . . .
lowQualScore : 8 3 99999999 4 4444444444444444444 2 0 888 0 4 0 66666666666666666666666 888 1 0 9 88 4 44 0 11 88 4 222222 5 888 0 000 3 3 0 7 3 3 4 9 1 2 6 0000 99 0 4 1 0 0000000000 4 0 8 0 7 7 7 66 9 444444444444444444444444444444444 7 8 5 0 5 5 22222222 5 2 000000000 777 7 0 0 5 00000000000000000000 5 000000000 0 0 0 00 55555 0 0 0 0 0
consensus : TTCATCATCTCTNGTAATCGCATCCCTC-------TGGAAGAG-TATT-------------------CTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAG-CTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACTAGATGGCACCCAGTC-TCCCAAGGACCGA---CTGGAACCCTT-CGAGGGTGGGCTGGCTGACTACCTCGGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAACTGTTCAGATATGCG--CTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCTAA-GTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCTGG--G--G-GT--TT--C-N--TACNTTAGGTCCACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGTTTGACAAATCGAGCTGC-CCTGCGCCGGACCATCTCAAGTTGGTTAATCNGNCAGTCAGTGTGNGGGGACCANACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGGCCTTTGGTGAACATGGTGCT--TATNTTTCTCCNGATGNAGGGCATGGTGGAGT
Reference ( gi|1 ) : TTCATCATCTCTAGTAATCACATCCCTC-------AGGAAGAG-TATT-------------------CTCGCGATATGTTTAA---AATACTGAGCACTCGCAGCAGTCAAATCAG-CTTTA-ATAGATAAACAATAAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATGAAAACATCAACAGTGA-ATTTAGATGACACCCAGTC-TTACAAGGATCAA---CTGGAACCTTT-CAAAGGTAGGCTGGCTGATTACCTCAGGTGGAAATCTGTTCTAGAGAACAATGGACACCGGATAGCGACTGTTCAGATATGCG--CTTTTTTTCGCAGATAACTAGACAAACTGATGATTTTGTCCTCTTGTGGAATTTCTAGTTTGTCTAA-GTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATTGTTGCAATGGCGCTTG--G--G-GT--TT--C-A--TACATC-GGTCTACCAACATATCAGTGACAATGCTAGTTCTTGAGAAGTCATGCTTGACAAAACGAGCTGC-CTTACACTGGACCATCACTAGTTAGTTAACCAGGCAGTCAGTGT--------------------GAGTACTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTTGACTTTGA-TTTTGATGAGCATGATGCTAATATATTTTTCCTGATGAAGGATATGGTGAAGT
gi|11 : TTCATCATCTCTTGTAAACGCA---------------GAAGAT-AATT-------------------TTTGTGATGTGGTTAA---AATACTAAGCACTTGCAGAAGTCAGATCAG-CTT---AT--ACAACTAAAAAATT-TTTT---TA-AAAGTAGGTATTGAAA
gi|10 : TCATTATCTCTTTTAATCTCATCCTTC-------TAGAAGAG-TATTAAAAAAATAGAAGAGTATACATGTGATGCGGTTAACCAAAT---GAGCACTCGCAGCAGTCAGGTCCGCCTTTT-ACAGATAAAAAATCA-----TTG---TATACAGT-GTCATT-AAAGCTGAT-AAAACATCAGCGTTGACAACTAGATGGAATCCAGTT-TCCCAAGGATTGA---CTGGAACCata
gi|19 : tcattaTCATCATCTCTAGTAATCGCATCCCTC-------TGGAAGAGTTATT-------------------CTCGcg
gi|17 : aTCATCATCTCTAGTAATCGCATCCCTC-------TGGAAGAG-TATT-------------------C
gi|16 : gtcaTCATCATCTCTAGTAATCGCATCTCTC-------TGGAAGAG-TATT-------------------gc
gi|15 : tccTCATCATCTCCTGTGATCGCATCCCTC-------TAGAGGAG-TATT-------------------CTCGCattgt
gi|20 : atcaacaTCATCATTTCTAGTAACCACATTCCTC-------TGGAAGAT-AATT-------------------CTCG
gi|13 : TTATCATCTCTTGTATTCACATCACTC-------TAGAACAG-TATT-------------------CATGCGATGTAGTTAA---ACAGCTGAGt
gi|14 : atcaTCATTATCTCTAGTAATCGCATCCCTCTTCCCCTCTGAAGAG-TATT-------------------CTTG
gi|18 : aTCATCATCTCTTGTACTCGCATCAATC-------TGGAAGCG-TATT-------------------CTgg
gi|22 : atgaCATCATCTCTCGTAATCGCATCCCTC-------TGGAAGAG-
gi|5 : ccATCATCTCTAGTGGTCGCGTCCCTC-------TGGAAGAG-AATT-------------------ATCGCAATGTGGTTTA---AATATTGAGCAATCGCAGCGGTCG-----G-CTTTTTACAGATAAA----AAGTACTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGATAA-AACTAGATGGCACAGAGTCACTA-AAGGACCAA---CTGGAACCCTT-CGA--GTGGACTGGCTGACTAACTCAGTCGGAAGTCTATTCCAGAGAACA---------GGAT--CAACTGTTCAGATATGCA--CTTTTAATCGCAGATAACTGGATAAACTGATGATTGTGCCCGCTTGTGGAACTTCTAGTTTGTCTAA-ATGGA------GGTCTGATGTCAACTAGGTTGTTGTAGA-CTTTGTAGAAC-ATTGTGAACCTTGTATTGTTGCTACGGCGCTAGA-G--G-GT--TT--C-aaa
gi|2 : atcatcatAATCGCATCCCTC-------TTGAAGAA-TATT-------------------CTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGTAGTCAAATCAG-C------------------------TTTT---TGTACAAT-GATATTAAAA----------ACATCAACGGTGA-AACTAGATGACACCCAATC-TCACAAGGACCGA---ATGGAACCTTT-TGAGGGTGGGCTGACTGACTACCTCAGGTGGAAGTCTGTTCAAGAAAACAATGGACACCGGATAGCAACTGTTCAGATATGCG--CTTTTCTTCGCAGATAATTGGATAAACTGATG-------------GTGGAATTTCTAGTTTGTCTAA-ATGGAGGACTTGGTTTGGTGTCAATTAGGTTGTTGTAGA-TATTGAAGAAC-ATTGTGTCCCGAGCAATGTTGCGACGGTACTGG--A--GTGT--TT--CTA--T-CTTA-GGTCTACCAACAccact
gi|8 : TCCCATCCTTC-------TGGAAGAG-TATT-------------------CTTGCGATGTGGTTAA---AATTCTGAGCACTCCCAGCAGTCAGATCAG-CTTTTTACAGATAAA-----AGTTTTTTTTTTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAAAGGTGA-AACTAGATGGCACACAATC-TCCCAAGGGCCAA---CTGGAACCCTT-TGAGGGTGGGCTGGCTGACTACCTCAGGTAGAAGTTCATTCCAGAGAATAATGGACATCGGATAGTAACTGTTCAGATATGCA--C--TTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCTCTTGTGGAATTTCTAGTTTGTCTAA-GTGGAGGACTTGGTCTGGTGTCAGCTAG---GTTGTAGA-TTTTctgctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|3 : CATCACTC-------TAGAAGAG-TATT-------------------CAGGCGATGTGGTTGA---AATACTGAGCACTCGCAACAGTCAGTTTA--TTTCC-ACAGATA-----TAAATTC------------AGT----ATTAAAATCAGATAAAAACTTCAACGGTGA-AACTAGATGGTACCTAACC-GCCAAAGGGCCGA---ATGAAACCCTC-CGAGGGTGGACTGGCTGGATATCTCGGGTGAAAGCCAGTTCCGGATAACAATGAAC------T-----CTG----AATATGTG--GTTTTATTTGCAGATAACATGTTAAACTGATAATTGTGCTCT-TTGTAGAATTTCCAATTCGTCTAA-GTGGATATCTTGCTCTGATGTCAACAAGGTCGTTGT-TA-CTTTGAAGAAC-ATTGTTACCCGGTCATCGATGAGACGGCG-TTGGAG--G-GT--TT--C-C--TATTTTAAGTCCACCAAAATAT--------AT--------------AGTTATATTTGACAAATCTAGCTGC-TCTACGCTGGACCAACTCCAGTTTGTTAATCTGTCAGTCAGTGTGTGGAGACCATACAGTTGAAGAGTATTCTAGGATTGGCCGGATA---------TATGCTTTCGAC-TTGACTTTTGGTGAACATGGTGCT--T-TATTTCTCCTGATGCAGGACATGATGAAGT
gi|7 : gCATCCCTC-------TAGAAGAG-TATT-------------------CTCGCGATGTGGTTAC---AATACTGACTACTTGCGGCAGTCAGATCAG-CTTTATGCAAATA------AAGTTCGCTT---TATACAGA-GCTATTAAAACTAAATACATATTTTAACGATGA-AAGTAGATGGCAATCAGT-----CAAGAAT-AACCTCTGGAGCCTCC-C-ATGGTGGGCTG-------ACCTCAAGTGG-----------------------ACGCCGTACAGAAACTGTTCAGATATGCGGACTTCTTT--ACATATATTTTGATGAACTAATAG----------TTGTGGAATTTC----TTGC-----GTGAA--ACTTCGTCCGGTGCCAACTAAGTTGTTATAGAGTGTTATAGAAC-ATCTTGACTC-GGCATCGTTGTGACGGCGCTGG--A--G-GC--TT-----------TC----CCACTG------CACTGGCACTGTTGGTCCCTGTGTAGTCATGTTTGACAA
gi|6 : GGAAGAG-TAAT-------------------CTTGCGTTTGGGTTAA---AAGACTGAGCATTTGCAGCAGTCAGATCAG-CTTTTTACAGATAAA----AAGTTTACTT---TGTACAGT-GATATTAAAAGAAGGTAAAAATATC-------A-AT---GGTGA-ACC------TTAAAATGA-CAT---CCAG----TCTGCAAAGG-----------ATT----CGGGTGGGAGCCTGCTCCAGAGAGCAATGGACGCCGGATAGTAGCTGTTCAGATATGCG--CTTTTTTT-GCTGATAACTGGATTAAGTGATGATTGTGACCCCATGTCAAATATCTAGTTTGTTTAAAGTTGAGGATTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTTAAACAAATG-GACCAGGGCATTGTTAAGGTGGCCCTGGA-G--G-GT--CT--C-T--CACATTAGATCTACCAACATGTCAGTGACACTGCTAGTCC
gi|4 : ctttATATTAAAAGAAGGTAAAAACATTAACGGTGA-AACTAAATGACACCCAGTC-TTCCAAAGGCCGA---CTGGA-CCCTT-CGAGGGTGAGTTGGCTGGCTACCTCAGGCGGGAGTCCGTTCCAGAGAACAATGGACGCCGGATAATAACTGTTCAGATATGCG--CTTTTCTTCGCAGATAGCTTGATAAATTGATGAGTGTG-CTCCTTGTTGAATTTCTAGTTTGTCTAA-GTGGATGACTTGGTCTGGTGTCTACTAGGTTATTGTAGT-TTGTGTAGAAC-ATTGTCACCCGGGCATTGCTGTGACGGCA-TAG--A--A-GTGGTT--C-C--CACTTTAGGTCTACCAACATTTCGGTGACACCTTCAGTCCTGGCGTAGTCATGCTTGACAAAACGAGCTGC-CCTGCGCCGGACCATCTAAAGCTGGTTAATCAGGCAATCAGTATGAGGGGACCAAACAGTTGAGGAGTAGTCTAGGATTGGCTAGACATATGTGCGGTATGCTTTCGAC-TTGG-CTTTGATGAA-ATAATGC---TATTTTTCTCCGGATGAAGGGCATGGTGGAGT
gi|9 : GGGAACAATAAATGCTGGATAGAAACTGTTCAATTATGGG--ATATTCTTTGCAGATAACTGGATAAACTTATTATTGTGTCCCCTTGTGGAATTTCTAGTTTATATAA-GTAAAGGACATGTTTTGGTGTTAACTAGGTTGTTGTAGA-TTTTGTAGAAT-ATTGAAACCAGGGCATCATTTTGACTGCAC-TG--AACG-GT--TTCCC-AGTTAAA----GTCTACCAAAATGTCAGTGACACTGCTGGTCATTGTGTAGTCATGTTTGACAAATCAAGCAGCGCTT
gi|12 : ACC-AGTCCACCAACATGTCAGTGCGGCTGCTGGCCCTTGTATTGTCATGCTTGACAAATAGAGCTTC-CCC-------ACCATCTCAAGTTGGTTAAtgctagatggtttgaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): ATTCATCATTATATCTTGATTATATTTATAAAATCTTGTT
Alignments
lowQualScore : 1111111111111111111 11111111111111111 1 111 11 1 11111 11 222
lowQualScore : 1 7777777 7777777777777777777 2 777 1 1 44444444444444444 0 4 1 0 4 66 0 777 0 0 1 1 1 22 9 0 0 4 0 2 2 0 1 3 1 0 4 6 4 5 0 2 5 333 5 5 66 22 33 11 1 0 1 1 4 3 0 1 1 22222 5 3 1 7 55 0 6 0 555 7 1 1 1 0 0
lowQualScore : . ....... ................... . ... . . ................. . . . . . .. . ... . . . . . .. . . . . . . . . . . . . . . . . . . . ... . . .. .. .. .. . . . . . . . . . ..... . . . . .. . . . ... . . . . . .
lowQualScore : 0 2222222 2222222222222222222 2 000 0 3 77777777777777777 9 4 9 8 4 11 1 888 9 8 4 4 4 11 4 8 9 2 9 6 9 1 8 0 9 1 4 7 4 0 4 2 0 000 0 0 99 22 22 77 4 4 4 4 6 5 2 0 0 77777 7 7 0 3 77 7 7 7 777 3 0 0 0 7 7
consensus : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCCCTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACCA-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGACTTGG-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
Reference ( family-10502 ) : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCGGGTGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGNAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCCCTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCNTACNTTAGGTCCACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGTTTGACAAATCGAGCTGCCCTGCGCCGGACCATCTCAAGTTGGTTAATCNGNCAGTCAGTGTGNGGGGACCANACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGACTTGGCCTTTGGTGAACATGGTGCT--TATNTTTCTCCNGATGNAGGGCATGGTGGAGT
gi|1 : TTCATCATCTCTAGTAATCACATCCCTCA-------GGAA-------------------GAG-TATTCTCGCGATATGTTTAA---AATACTGAGCACTCGCAGCAGTCAAATCAGCTTTA-ATAGATAAACAATAAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATGAAAACATCAACAGTGA-ATTT--AGATGACACCCAGTCTTACAAG---GATCAACTGGAACCTTTCAAAGGTAGGCTGGCTGATTACCTCAGGTGGAAATCTGTTCTAGAGAACAATGGACACCGGATAGCGACTGTTCAGATATGCGCTTTTTTTCGCAGATAACTAGACAAACTGATGATTTTGTCCTCTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATTGTTGCAATGGCGCT-TG-G-G-G-T--TTCATACATC-GGTCTACCAACATATCAGTGACAATGCTAGTTCTTGAGAAGTCATGCTTGACAAAACGAGCTGCCTTACACTGGACCATCACTAGTTAGTTAACCAGGCAGTCAGTGT--------------------GAGTACTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTTGACTTTGATTTTGATGAGCATGATGCTAATATATTTTTCCTGATGAAGGATATGGTGAAGT
gi|10 : TCATTATCTCTTTTAATCTCATCCTTCT-------AGAAGAGTATTAAAAAAATAGAAGAG-TATACATGTGATGCGGTTAACCAAAT---GAGCACTCGCAGCAGTCAGGTCCGCCTTTTACAGATAAA----AAA-TCATTG---TATACAGT-GTCATT-AAAGCTGAT-AAAACATCAGCGTTGACAACT--AGATGGAATCCAGTTTCCCAAG---GATTGACTGGAACCC
gi|11 : tcattaTTCATCATCTCTTGTAAACGCA---------------GAA-------------------GAT-AATTTTTGTGATGTGGTTAA---AATACTAAGCACTTGCAGAAGTCAGATCAGC-TTATACAACTAAA----AAATT-TTTT---TA-AAAGTAGGTATTGAAAg
gi|12 : GTCCACCAACATGTCAGTGCGGCTGCTGGCCCTTGTATTGTCATGCTTGACAAATAGAGCTTCCCC-------ACCATCTCAAGTTGGTTAATata
gi|13 : accaTTATCATCTCTTGTATTCACATCACTCT-------AGAA-------------------CAG-TATTCATGCGATGTAGTTAA---ACAGCTGAG
gi|14 : atcaTCATTATCTCTAGTAATCGCATCCCTCTTCCCCTCTGAA-------------------GAG-TATTCTTG
gi|15 : aTCATCATCTCCTGTGATCGCATCCCTCT-------AGAG-------------------GAG-TATTCTCGCgg
gi|16 : atcaacaTCATCATCTCTAGTAATCGCATCTCTCT-------GGAA-------------------GAG-TATT
gi|17 : tccTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCattgt
gi|18 : gtcaTCATCATCTCTTGTACTCGCATCAATCT-------GGAA-------------------GCG-TATTCTgc
gi|19 : atgaTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAGTTATTCTCG
gi|2 : aAATCGCATCCCTCT-------TGAA-------------------GAA-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGTAGTCAAATCAGCTTTTT---------------------------GTACAAT-GATATTAAA----------AACATCAACGGTGA-AACT--AGATGACACCCAATCTCACAAG---GACCGAATGGAACCTTTTGAGGGTGGGCTGACTGACTACCTCAGGTGGAAGTCTGTTCAAGAAAACAATGGACACCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAATTGGATAAACTGATG-------------GTGGAATTTCTAGTTTGTCT-AAATGGAGGACTTGGTTTGGTGTCAATTAGGTTGTTGTAGA-TATTGAAGAAC-ATTGTGTCCCGAGCAATGTTGCGACGGTACT-GG-A-GTG-T--TTC-TATCTTAGGTCTACCAACA
gi|20 : TCATCATTTCTAGTAACCACATTCCTCT-------GGAA-------------------GAT-AATTCTCGctgctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|22 : CATCATCTCTCGTAATCGCATCCCTCT-------GGAA-------------------GAG-t
gi|3 : ccGCATCACTCT-------AGAA-------------------GAG-TATTCAGGCGATGTGGTTGA---AATACTGAGCACTCGCAACAGTCAGTTTA--TTTCCACAGATATA----AA-------T---T---CAGT----ATTAAAATCAGATAAAAACTTCAACGGTGA-AACT--AGATGGTACCTAACCGCCAAAG---GGCCGAATGAAACCCTCCGAGGGTGGACTGGCTGGATATCTCGGGTGAAAGCCAGTTCCGGATAACAATGAACTCTG---------------AATATGTGGTTTTATTTGCAGATAACATGTTAAACTGATAATTGTG-CTCTTTGTAGAATTTCCAATTCGTCT-AAGTGGATATCTTGCTCTGATGTCAACAAGGTCGTTGT-TA-CTTTGAAGAAC-ATTGTTACCCGGTCATCGATGAGACGGCGTT-GGAG-G-G-T--TTCCTATTTTAAGTCCACCAAAA----------------------TATATAGTTATATTTGACAAATCTAGCTGCTCTACGCTGGACCAACTCCAGTTTGTTAATCTGTCAGTCAGTGTGTGGAGACCATACAGTTGAAGAGTATTCTAGGATTGGCCGGATA---------TATGCTTTCGACTTGACTTTTGGTGAACATGGTGCT--T-TATTTCTCCTGATGCAGGACATGATGAAGTaaa
gi|4 : ATATTAAAAGAAGGTAAAAACATTAACGGTGA-AACT--AAATGACACCCAGTCTTCCAAA---GGCCGACTGGA-CCCTTCGAGGGTGAGTTGGCTGGCTACCTCAGGCGGGAGTCCGTTCCAGAGAACAATGGACGCCGGATAATAACTGTTCAGATATGCGCTTTTCTTCGCAGATAGCTTGATAAATTGATGAGTGTG-CTCCTTGTTGAATTTCTAGTTTGTCT-AAGTGGATGACTTGGTCTGGTGTCTACTAGGTTATTGTAGT-TTGTGTAGAAC-ATTGTCACCCGGGCATTGCTGTGACGGCA-T-AG-A-A-G-TGGTTCCCACTTTAGGTCTACCAACATTTCGGTGACACCTTCAGTCCTGGCGTAGTCATGCTTGACAAAACGAGCTGCCCTGCGCCGGACCATCTAAAGCTGGTTAATCAGGCAATCAGTATGAGGGGACCAAACAGTTGAGGAGTAGTCTAGGATTGGCTAGACATATGTGCGGTATGCTTTCGACTTGG-CTTTGATGAA-ATAATGC---TATTTTTCTCCGGATGAAGGGCATGGTGGAGT
gi|5 : ATCATCTCTAGTGGTCGCGTCCCTCT-------GGAA-------------------GAG-AATTATCGCAATGTGGTTTA---AATATTGAGCAATCGCAGCGGTCGG-----CTTTTTACAGATAAA----AAGTACTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGATAA-AACT--AGATGGCACAGAGTCACTAAAG---GACCAACTGGAACCCTTCGA--GTGGACTGGCTGACTAACTCAGTCGGAAGTCTATTCCAGAGAACA---------GGAT--CAACTGTTCAGATATGCACTTTTAATCGCAGATAACTGGATAAACTGATGATTGTGCCCGCTTGTGGAACTTCTAGTTTGTCT-AAATGGA------GGTCTGATGTCAACTAGGTTGTTGTAGA-CTTTGTAGAAC-ATTGTGAACCTTGTATTGTTGCTACGGCGCTAGA-G-G-G-T--TTCCCAC
gi|6 : atcatcatCTTT-------GGAA-------------------GAG-TAATCTTGCGTTTGGGTTAA---AAGACTGAGCATTTGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTTACTT---TGTACAGT-GATATTAAAAGAAGGTAAAAATATCAATGGTGA-ACCTTAAAATGACATCCAGTCTGCAAAG---GA-------------TTC--GGGTGGG----------------------AGCCTGCTCCAGAGAGCAATGGACGCCGGATAGTAGCTGTTCAGATATGCGCTTTT-TTTGCTGATAACTGGATTAAGTGATGATTGTGACCCCATGTCAAATATCTAGTTTGTTTAAAGTTGAGGATTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTTAAACAAATG-GACCAGGGCATTGTTAAGGTGGCCCT-GGAG-G-G-T--CTCTCACATTAGATCTACCAACATGTCAGTGACACTGCTAGTCCt
gi|7 : CATCCCTCT-------AGAA-------------------GAG-TATTCTCGCGATGTGGTTAC---AATACTGACTACTTGCGGCAGTCAGATCAGCTTTATGCAAAT--A----AAGTTCGCTT---TATACAGA-GCTATTAAAACTAAATACATATTTTAACGATGA-AAGT--AGATGGCAATCAGT----CAAGAATAACCT-CTGGAG-CCTCCCATGGTGGGCTG-------ACCTC------AAG-----------------TGGACGCCGTACAGAAACTGTTCAGATATGCGGACTTCTTTACATATATTTTGATGAACTAATAG----------TTGTGGAATTTC----TTGC-----GTGAA--ACTTCGTCCGGTGCCAACTAAGTTGTTATAGAGTGTTATAGAAC-ATCTTGACTC-GGCATCGTTGTGACGGCGCT-GG-A-G-GCT--TTC-----------CCAC-----TG-CACTGGCACTGTTGGTCCCTGTGTAGTCATGTTTGACAA
gi|8 : TCCCATCCTTCT-------GGAA-------------------GAG-TATTCTTGCGATGTGGTTAA---AATTCTGAGCACTCCCAGCAGTCAGATCAGCTTTTTACAGATAAA----A-GTTTTTTTTTTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAAAGGTGA-AACT--AGATGGCACACAATCTCCCAAG---GGCCAACTGGAACCCTTTGAGGGTGGGCTGGCTGACTACCTCAGGTAGAAGTTCATTCCAGAGAATAATGGACATCGGATAGTAACTGTTCAGATATGCAC--TTCTTCGCAGATAACTGGATAAACTGATGATTGTGCCCTCTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAGCTAG---GTTGTAGA-TTTT
gi|9 : GGGAACAATAAATGCTGGATAGAAACTGTTCAATTATGGGATATTCTTTGCAGATAACTGGATAAACTTATTATTGTGTCCCCTTGTGGAATTTCTAGTTTATAT-AAGTAAAGGACATGTTTTGGTGTTAACTAGGTTGTTGTAGA-TTTTGTAGAAT-ATTGAAACCAGGGCATCATTTTGACTGCACT-GA-ACG-G-T--TTCCCAGTTAAAGTCTACCAAAATGTCAGTGACACTGCTGGTCATTGTGTAGTCATGTTTGACAAATCAAGCAGCGCTTTGCTAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTCATCATTATATCTTGATTATATTTATAAAATCTTGTT
Alignments
lowQualScore : 1111111111111111111 11111111111111111 11111 111 555555555555 1 11 222
lowQualScore : 1 7777777 7777777777777777777 2 777 1 1 44444444444444444 0 4 1 0 4 66 0 777 0 0 1 1 1 22 7 4 0 3 2 0 1 44444 0 4 6 4 5 0 2 5 333 5 5 66 6 11 1 0 1 9 1 0 333333333333 3 1 7 3 44 6 555 7
lowQualScore : . ....... ................... . ... . . ................. . . . . . .. . ... . . . . . .. . . . . . . . ..... . . . . . . . . ... . . .. . .. . . . . . . ............ . . . . .. . ... .
lowQualScore : 0 2222222 2222222222222222222 2 000 0 3 77777777777777777 9 4 9 8 4 11 1 888 9 8 4 4 4 11 4 2 9 7 9 1 8 22222 1 4 7 4 0 4 2 0 000 0 0 99 6 77 4 4 4 0 0 2 333333333333 7 0 3 3 00 7 777 3
consensus : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGA-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
Reference ( family-10502 ) : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGG-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
gi|1 : TTCATCATCTCTAGTAATCACATCCCTCA-------GGAA-------------------GAG-TATTCTCGCGATATGTTTAA---AATACTGAGCACTCGCAGCAGTCAAATCAGCTTTA-ATAGATAAACAATAAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATGAAAACATCAACAGTGA-ATTT--AGATGACACCCAGTCTTACAAG---GATCAACTGGAACCTTTCAAAGGTAGGCTGGCTGATTACCTCAGGTGGAAATCTGTTCTAGAGAACAATGGACACCGGATAGCGACTGTTCAGATATGCGCTTTTTTTCGCAGATAACTAGACAAACTGATGATTTTGTCCT-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATTGTTGCAATGGCGCT-TG-G-G-G-T--TTCATACATC-GGTCTACCAACATATCAGTGACAATGCTAGTTCTTGAGAAGTCATGCTTGACAAAACGAGCTGCCTTACACTGGACCATCACTAGTTAGTTAACCAGGCAGTCAGTGT---------------------GAGTACTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTTGACTTTGA-TTTTGATGAGCATGATGCTAATATATTTTTCCTGATGAAGGATATGGTGAAGT
gi|10 : TCATTATCTCTTTTAATCTCATCCTTCT-------AGAAGAGTATTAAAAAAATAGAAGAG-TATACATGTGATGCGGTTAACCAAAT---GAGCACTCGCAGCAGTCAGGTCCGCCTTTTACAGATAAA----AAA-TCATTG---TATACAGT-GTCATT-AAAGCTGAT-AAAACATCAGCGTTGACAACT--AGATGGAATCCAGTTTCCCAAG---GATTGACTGGAACCC
gi|11 : tcattaTTCATCATCTCTTGTAAACGCA---------------GAA-------------------GAT-AATTTTTGTGATGTGGTTAA---AATACTAAGCACTTGCAGAAGTCAGATCAGC-TTATACAACTAAA----AAATT-TTTT---TA-AAAGTAGGTATTGAAAg
gi|12 : GTCCACCAACATGTCAGTGCGGCTGCTGGCCCTTGTATTGTCATGCTTGACAAATAGAGCTTCCCC-------ACCATCTCAAGTTGGTTAATata
gi|13 : accaTTATCATCTCTTGTATTCACATCACTCT-------AGAA-------------------CAG-TATTCATGCGATGTAGTTAA---ACAGCTGAG
gi|14 : atcaTCATTATCTCTAGTAATCGCATCCCTCTTCCCCTCTGAA-------------------GAG-TATTCTTG
gi|15 : aTCATCATCTCCTGTGATCGCATCCCTCT-------AGAG-------------------GAG-TATTCTCGCgg
gi|16 : atcaacaTCATCATCTCTAGTAATCGCATCTCTCT-------GGAA-------------------GAG-TATT
gi|17 : tccTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCattgt
gi|18 : gtcaTCATCATCTCTTGTACTCGCATCAATCT-------GGAA-------------------GCG-TATTCTgc
gi|19 : atgaTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAGTTATTCTCG
gi|2 : aAATCGCATCCCTCT-------TGAA-------------------GAA-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGTAGTCAAATCAGCTTTTT---------------------------GTACAAT-GATATTAAA----------AACATCAACGGTGA-AACT--AGATGACACCCAATCTCACAAG---GACCGAATGGAACCTTTTGAGGGTGGGCTGACTGACTACCTCAGGTGGAAGTCTGTTCAAGAAAACAATGGACACCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAATTGGATAAACTGATG--------------GTGGAATTTCTAGTTTGTCT-AAATGGAGGACTTGGTTTGGTGTCAATTAGGTTGTTGTAGA-TATTGAAGAAC-ATTGTGTCCCGAGCAATGTTGCGACGGTACT-GG-A-GTG-T--TT-CTATCTTAGGTCTACCAACA
gi|20 : TCATCATTTCTAGTAACCACATTCCTCT-------GGAA-------------------GAT-AATTCTCGctgctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|22 : CATCATCTCTCGTAATCGCATCCCTCT-------GGAA-------------------GAG-t
gi|3 : ccGCATCACTCT-------AGAA-------------------GAG-TATTCAGGCGATGTGGTTGA---AATACTGAGCACTCGCAACAGTCAGTTTA--TTTCCACAGATATA----AA-------T---T---CAGT----ATTAAAATCAGATAAAAACTTCAACGGTGA-AACT--AGATGGTACCTAACCGCCAAAG---GGCCGAATGAAACCCTCCGAGGGTGGACTGGCTGGATATCTCGGGTGAAAGCCAGTTCCGGATAACAATGAACTCTG---------------AATATGTGGTTTTATTTGCAGATAACATGTTAAACTGATAATTGTG-CTC-TTTGTAGAATTTCCAATTCGTCT-AAGTGGATATCTTGCTCTGATGTCAACAAGGTCGTTGT-TA-CTTTGAAGAAC-ATTGTTACCCGGTCATCGATGAGACGGCGTT-GGAG-G-G-T--TTCCTATTTTAAGTCCACCAAAA----------------------TATATAGTTATATTTGACAAATCTAGCTGCTCTACGCTGGACCAACTCCAGTTTGTTAATCTGTCAGTCAGTGTGTGGAGACC-ATACAGTTGAAGAGTATTCTAGGATTGGCCGGATA---------TATGCTTTCGAC-TTGACTTTTGGTGAACATGGTGCT--T-TATTTCTCCTGATGCAGGACATGATGAAGTaaa
gi|4 : ATATTAAAAGAAGGTAAAAACATTAACGGTGA-AACT--AAATGACACCCAGTCTTCCAAA---GGCCGACTGGA-CCCTTCGAGGGTGAGTTGGCTGGCTACCTCAGGCGGGAGTCCGTTCCAGAGAACAATGGACGCCGGATAATAACTGTTCAGATATGCGCTTTTCTTCGCAGATAGCTTGATAAATTGATGAGTGTG-CTC-CTTGTTGAATTTCTAGTTTGTCT-AAGTGGATGACTTGGTCTGGTGTCTACTAGGTTATTGTAGT-TTGTGTAGAAC-ATTGTCACCCGGGCATTGCTGTGACGGCA-T-AG-A-A-G-TGGTTCCCACTTTAGGTCTACCAACATTTCGGTGACACCTTCAGTCCTGGCGTAGTCATGCTTGACAAAACGAGCTGCCCTGCGCCGGACCATCTAAAGCTGGTTAATCAGGCAATCAGTATGAGGGGACCAA-ACAGTTGAGGAGTAGTCTAGGATTGGCTAGACATATGTGCGGTATGCTTTCGAC-TTGG-CTTTGATGAA-ATAATGC---TATTTTTCTCCGGATGAAGGGCATGGTGGAGT
gi|5 : ATCATCTCTAGTGGTCGCGTCCCTCT-------GGAA-------------------GAG-AATTATCGCAATGTGGTTTA---AATATTGAGCAATCGCAGCGGTCGG-----CTTTTTACAGATAAA----AAGTACTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGATAA-AACT--AGATGGCACAGAGTCACTAAAG---GACCAACTGGAACCCTTCGA--GTGGACTGGCTGACTAACTCAGTCGGAAGTCTATTCCAGAGAACA---------GGAT--CAACTGTTCAGATATGCACTTTTAATCGCAGATAACTGGATAAACTGATGATTGTG-CCCGCTTGTGGAACTTCTAGTTTGTCT-AAATGGA------GGTCTGATGTCAACTAGGTTGTTGTAGA-CTTTGTAGAAC-ATTGTGAACCTTGTATTGTTGCTACGGCGCTAGA-G-G-G-T--TTCCCAC
gi|6 : atcatcatCTTT-------GGAA-------------------GAG-TAATCTTGCGTTTGGGTTAA---AAGACTGAGCATTTGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTTACTT---TGTACAGT-GATATTAAAAGAAGGTAAAAATATCAATGGTGA-ACCTTAAAATGACATCCAGTCTGCAAAG---GA-------------TTC--GGGTGGG----------------------AGCCTGCTCCAGAGAGCAATGGACGCCGGATAGTAGCTGTTCAGATATGCGCTTTT-TTTGCTGATAACTGGATTAAGTGATGATTGTGACCC-CATGTCAAATATCTAGTTTGTTTAAAGTTGAGGATTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTTAAACAAATG-GACCAGGGCATTGTTAAGGTGGCCCT-GGAG-G-G-T--CTCTCACATTAGATCTACCAACATGTCAGTGACACTGCTAGTCCt
gi|7 : CATCCCTCT-------AGAA-------------------GAG-TATTCTCGCGATGTGGTTAC---AATACTGACTACTTGCGGCAGTCAGATCAGCTTTATGCAAAT--A----AAGTTCGCTT---TATACAGA-GCTATTAAAACTAAATACATATTTTAACGATGA-AAGT--AGATGGCAATCAGT----CAAGAATAACCT-CTGGAG-CCTCCCATGGTGGGCTG-------ACCTCAAG-----------------------TGGACGCCGTACAGAAACTGTTCAGATATGCGGACTTCTTTACATATATTTTGATGAACTAATAG-----------TTGTGGAATTTC----TTGC-----GTGAA--ACTTCGTCCGGTGCCAACTAAGTTGTTATAGAGTGTTATAGAAC-ATCTTGACTC-GGCATCGTTGTGACGGCGCT-GG-A-G-GCT--TTCCCAC----------------TG-CACTGGCACTGTTGGTCCCTGTGTAGTCATGTTTGACAA
gi|8 : TCCCATCCTTCT-------GGAA-------------------GAG-TATTCTTGCGATGTGGTTAA---AATTCTGAGCACTCCCAGCAGTCAGATCAGCTTTTTACAGATAAA----A-GTTTTTTTTTTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAAAGGTGA-AACT--AGATGGCACACAATCTCCCAAG---GGCCAACTGGAACCCTTTGAGGGTGGGCTGGCTGACTACCTCAGGTAGAAGTTCATTCCAGAGAATAATGGACATCGGATAGTAACTGTTCAGATATGCAC--TTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCCTCTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAGCTAG---GTTGTAGA-TTTT
gi|9 : GGGAACAATAAATGCTGGATAGAAACTGTTCAATTATGGGATATTCTTTGCAGATAACTGGATAAACTTATTATTGTGTCCC-CTTGTGGAATTTCTAGTTTATAT-AAGTAAAGGACATGTTTTGGTGTTAACTAGGTTGTTGTAGA-TTTTGTAGAAT-ATTGAAACCAGGGCATCATTTTGACTGCACT-GA-ACG-G-T--TTCCCAGTTAAAGTCTACCAAAATGTCAGTGACACTGCTGGTCATTGTGTAGTCATGTTTGACAAATCAAGCAGCGCTTTGCTAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTCATCATTATATCTTGATTATATTTATAAAATCTTGTT
Alignments
lowQualScore : 1111111111111111111 11111111111111111 11111 111 555555555555 1 1 222
lowQualScore : 1 7777777 7777777777777777777 2 777 1 1 44444444444444444 0 4 1 0 4 66 0 777 0 0 1 1 1 22 7 4 0 3 2 0 1 44444 0 4 6 4 5 0 2 5 333 5 5 66 6 11 1 0 1 9 1 0 333333333333 3 1 7 3 3 6 555 7
lowQualScore : . ....... ................... . ... . . ................. . . . . . .. . ... . . . . . .. . . . . . . . ..... . . . . . . . . ... . . .. . .. . . . . . . ............ . . . . . . ... .
lowQualScore : 0 2222222 2222222222222222222 2 000 0 3 77777777777777777 9 4 9 8 4 11 1 888 9 8 4 4 4 11 4 2 9 7 9 1 8 22222 1 4 7 4 0 4 2 0 000 0 0 99 6 77 4 4 4 0 0 2 333333333333 7 0 3 3 3 7 777 3
consensus : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGA-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
Reference ( family-10502 ) : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGA-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
gi|1 : TTCATCATCTCTAGTAATCACATCCCTCA-------GGAA-------------------GAG-TATTCTCGCGATATGTTTAA---AATACTGAGCACTCGCAGCAGTCAAATCAGCTTTA-ATAGATAAACAATAAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATGAAAACATCAACAGTGA-ATTT--AGATGACACCCAGTCTTACAAG---GATCAACTGGAACCTTTCAAAGGTAGGCTGGCTGATTACCTCAGGTGGAAATCTGTTCTAGAGAACAATGGACACCGGATAGCGACTGTTCAGATATGCGCTTTTTTTCGCAGATAACTAGACAAACTGATGATTTTGTCCT-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATTGTTGCAATGGCGCT-TG-G-G-G-T--TTCATACATC-GGTCTACCAACATATCAGTGACAATGCTAGTTCTTGAGAAGTCATGCTTGACAAAACGAGCTGCCTTACACTGGACCATCACTAGTTAGTTAACCAGGCAGTCAGTGT---------------------GAGTACTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTTGACTTTGA-TTTTGATGAGCATGATGCTAATATATTTTTCCTGATGAAGGATATGGTGAAGT
gi|10 : TCATTATCTCTTTTAATCTCATCCTTCT-------AGAAGAGTATTAAAAAAATAGAAGAG-TATACATGTGATGCGGTTAACCAAAT---GAGCACTCGCAGCAGTCAGGTCCGCCTTTTACAGATAAA----AAA-TCATTG---TATACAGT-GTCATT-AAAGCTGAT-AAAACATCAGCGTTGACAACT--AGATGGAATCCAGTTTCCCAAG---GATTGACTGGAACCC
gi|11 : tcattaTTCATCATCTCTTGTAAACGCA---------------GAA-------------------GAT-AATTTTTGTGATGTGGTTAA---AATACTAAGCACTTGCAGAAGTCAGATCAGC-TTATACAACTAAA----AAATT-TTTT---TA-AAAGTAGGTATTGAAAg
gi|12 : GTCCACCAACATGTCAGTGCGGCTGCTGGCCCTTGTATTGTCATGCTTGACAAATAGAGCTTCCCC-------ACCATCTCAAGTTGGTTAATata
gi|13 : accaTTATCATCTCTTGTATTCACATCACTCT-------AGAA-------------------CAG-TATTCATGCGATGTAGTTAA---ACAGCTGAG
gi|14 : atcaTCATTATCTCTAGTAATCGCATCCCTCTTCCCCTCTGAA-------------------GAG-TATTCTTG
gi|15 : aTCATCATCTCCTGTGATCGCATCCCTCT-------AGAG-------------------GAG-TATTCTCGCgg
gi|16 : atcaacaTCATCATCTCTAGTAATCGCATCTCTCT-------GGAA-------------------GAG-TATT
gi|17 : tccTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCattgt
gi|18 : gtcaTCATCATCTCTTGTACTCGCATCAATCT-------GGAA-------------------GCG-TATTCTgc
gi|19 : atgaTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAGTTATTCTCG
gi|2 : aAATCGCATCCCTCT-------TGAA-------------------GAA-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGTAGTCAAATCAGCTTTTT---------------------------GTACAAT-GATATTAAA----------AACATCAACGGTGA-AACT--AGATGACACCCAATCTCACAAG---GACCGAATGGAACCTTTTGAGGGTGGGCTGACTGACTACCTCAGGTGGAAGTCTGTTCAAGAAAACAATGGACACCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAATTGGATAAACTGATG--------------GTGGAATTTCTAGTTTGTCT-AAATGGAGGACTTGGTTTGGTGTCAATTAGGTTGTTGTAGA-TATTGAAGAAC-ATTGTGTCCCGAGCAATGTTGCGACGGTACT-GG-A-GTG-T--TT-CTATCTTAGGTCTACCAACA
gi|20 : TCATCATTTCTAGTAACCACATTCCTCT-------GGAA-------------------GAT-AATTCTCGctgctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|22 : CATCATCTCTCGTAATCGCATCCCTCT-------GGAA-------------------GAG-t
gi|3 : ccGCATCACTCT-------AGAA-------------------GAG-TATTCAGGCGATGTGGTTGA---AATACTGAGCACTCGCAACAGTCAGTTTA--TTTCCACAGATATA----AA-------T---T---CAGT----ATTAAAATCAGATAAAAACTTCAACGGTGA-AACT--AGATGGTACCTAACCGCCAAAG---GGCCGAATGAAACCCTCCGAGGGTGGACTGGCTGGATATCTCGGGTGAAAGCCAGTTCCGGATAACAATGAACTCTG---------------AATATGTGGTTTTATTTGCAGATAACATGTTAAACTGATAATTGTG-CTC-TTTGTAGAATTTCCAATTCGTCT-AAGTGGATATCTTGCTCTGATGTCAACAAGGTCGTTGT-TA-CTTTGAAGAAC-ATTGTTACCCGGTCATCGATGAGACGGCGTT-GGAG-G-G-T--TTCCTATTTTAAGTCCACCAAAA----------------------TATATAGTTATATTTGACAAATCTAGCTGCTCTACGCTGGACCAACTCCAGTTTGTTAATCTGTCAGTCAGTGTGTGGAGACC-ATACAGTTGAAGAGTATTCTAGGATTGGCCGGATA---------TATGCTTTCGAC-TTGACTTTTGGTGAACATGGTGCT--T-TATTTCTCCTGATGCAGGACATGATGAAGTaaa
gi|4 : ATATTAAAAGAAGGTAAAAACATTAACGGTGA-AACT--AAATGACACCCAGTCTTCCAAA---GGCCGACTGGA-CCCTTCGAGGGTGAGTTGGCTGGCTACCTCAGGCGGGAGTCCGTTCCAGAGAACAATGGACGCCGGATAATAACTGTTCAGATATGCGCTTTTCTTCGCAGATAGCTTGATAAATTGATGAGTGTG-CTC-CTTGTTGAATTTCTAGTTTGTCT-AAGTGGATGACTTGGTCTGGTGTCTACTAGGTTATTGTAGT-TTGTGTAGAAC-ATTGTCACCCGGGCATTGCTGTGACGGCA-T-AG-A-A-G-TGGTTCCCACTTTAGGTCTACCAACATTTCGGTGACACCTTCAGTCCTGGCGTAGTCATGCTTGACAAAACGAGCTGCCCTGCGCCGGACCATCTAAAGCTGGTTAATCAGGCAATCAGTATGAGGGGACCAA-ACAGTTGAGGAGTAGTCTAGGATTGGCTAGACATATGTGCGGTATGCTTTCGAC-TTGG-CTTTGATGAA-ATAATGC---TATTTTTCTCCGGATGAAGGGCATGGTGGAGT
gi|5 : ATCATCTCTAGTGGTCGCGTCCCTCT-------GGAA-------------------GAG-AATTATCGCAATGTGGTTTA---AATATTGAGCAATCGCAGCGGTCGG-----CTTTTTACAGATAAA----AAGTACTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGATAA-AACT--AGATGGCACAGAGTCACTAAAG---GACCAACTGGAACCCTTCGA--GTGGACTGGCTGACTAACTCAGTCGGAAGTCTATTCCAGAGAACA---------GGAT--CAACTGTTCAGATATGCACTTTTAATCGCAGATAACTGGATAAACTGATGATTGTG-CCCGCTTGTGGAACTTCTAGTTTGTCT-AAATGGA------GGTCTGATGTCAACTAGGTTGTTGTAGA-CTTTGTAGAAC-ATTGTGAACCTTGTATTGTTGCTACGGCGCTAGA-G-G-G-T--TTCCCAC
gi|6 : atcatcatCTTT-------GGAA-------------------GAG-TAATCTTGCGTTTGGGTTAA---AAGACTGAGCATTTGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTTACTT---TGTACAGT-GATATTAAAAGAAGGTAAAAATATCAATGGTGA-ACCTTAAAATGACATCCAGTCTGCAAAG---GA-------------TTC--GGGTGGG----------------------AGCCTGCTCCAGAGAGCAATGGACGCCGGATAGTAGCTGTTCAGATATGCGCTTTT-TTTGCTGATAACTGGATTAAGTGATGATTGTGACCC-CATGTCAAATATCTAGTTTGTTTAAAGTTGAGGATTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTTAAACAAATG-GACCAGGGCATTGTTAAGGTGGCCCT-GGAG-G-G-T--CTCTCACATTAGATCTACCAACATGTCAGTGACACTGCTAGTCCt
gi|7 : CATCCCTCT-------AGAA-------------------GAG-TATTCTCGCGATGTGGTTAC---AATACTGACTACTTGCGGCAGTCAGATCAGCTTTATGCAAAT--A----AAGTTCGCTT---TATACAGA-GCTATTAAAACTAAATACATATTTTAACGATGA-AAGT--AGATGGCAATCAGT----CAAGAATAACCT-CTGGAG-CCTCCCATGGTGGGCTG-------ACCTCAAG-----------------------TGGACGCCGTACAGAAACTGTTCAGATATGCGGACTTCTTTACATATATTTTGATGAACTAATAG-----------TTGTGGAATTTC----TTGC-----GTGAA--ACTTCGTCCGGTGCCAACTAAGTTGTTATAGAGTGTTATAGAAC-ATCTTGACTC-GGCATCGTTGTGACGGCGCT-GG-A-G-GCT--TTCCCAC----------------TG-CACTGGCACTGTTGGTCCCTGTGTAGTCATGTTTGACAA
gi|8 : TCCCATCCTTCT-------GGAA-------------------GAG-TATTCTTGCGATGTGGTTAA---AATTCTGAGCACTCCCAGCAGTCAGATCAGCTTTTTACAGATAAA----A-GTTTTTTTTTTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAAAGGTGA-AACT--AGATGGCACACAATCTCCCAAG---GGCCAACTGGAACCCTTTGAGGGTGGGCTGGCTGACTACCTCAGGTAGAAGTTCATTCCAGAGAATAATGGACATCGGATAGTAACTGTTCAGATATGCAC--TTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCCTCTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAGCTAG---GTTGTAGA-TTTT
gi|9 : GGGAACAATAAATGCTGGATAGAAACTGTTCAATTATGGGATATTCTTTGCAGATAACTGGATAAACTTATTATTGTGTCCC-CTTGTGGAATTTCTAGTTTATAT-AAGTAAAGGACATGTTTTGGTGTTAACTAGGTTGTTGTAGA-TTTTGTAGAAT-ATTGAAACCAGGGCATCATTTTGACTGCACT-GA-ACG-G-T--TTCCCAGTTAAAGTCTACCAAAATGTCAGTGACACTGCTGGTCATTGTGTAGTCATGTTTGACAAATCAAGCAGCGCTTTGCTAGA
blockSeqs : T TCCCCTC GAGTATTAAAAAAATAGAA T CCA G T AGTTTTTTTTTT A C C TA AAT G G A AC T T C C T CCCG A G G A C A AG T C GG C TA T T A A GTGGAGACCAT A T T . C C T A
blockSeqs : T . . . . A A AAGTACTTTT . C . . . G G G GA T A T A G ACCC . T . . A . AG . . . T TA T T G C GAGGGGACCAA G G . . . . . .
blockSeqs : T . . . . A T AAGTTTACTT . A . . . G G G GC C C C C T CCCT . T . . T . AC . . . T TA T A T A
blockSeqs : A . . . . T C AAGTTCGCTT . A . . . G G G AC C T T A T TCCC . G . . C . A . . . A TA T T .
blockSeqs : T . . . . A T AAATCATTG . A . . . C T G AC T T A C T CTC . G . . A . A . . . T AA .
blockSeqs : A . . . . A T AAATTTTTT . T . . . G G . . . C T C T CTC . G . . T . G . . . . . .
blockSeqs : A . . . . A A AAT . A . . . . . . . . . A C . . . . . . T . A . . .
blockSeqs : T . . . . . T . . . . . . . . . . . . .
blockSeqs : A . . . .
blockSeqs : A . . .
blockSeqs : C . . .
blockSeqs : A . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : AAGTTTTTT******** TA
originalCons : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGTTCTTTT---TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGA-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
finalCons : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAAAAGTTTTTT--------TGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGA-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTCATCATTATATCTTGATTATATTTATAAAATCTTGTT
Alignments
lowQualScore : 1111111111111111111 222222222222222222 11111 111 555555555555 1 1 222
lowQualScore : 1 7777777 7777777777777777777 2 777 1 1 777777777777777777 0 4 1 0 4 66 0 777 0 0 1 1 1 22 7 4 0 3 2 0 1 44444 0 4 6 4 5 0 2 5 333 5 5 66 6 11 1 0 1 9 1 0 333333333333 3 1 7 3 3 6 555 7
lowQualScore : . ....... ................... . ... . . .................. . . . . . .. . ... . . . . . .. . . . . . . . ..... . . . . . . . . ... . . .. . .. . . . . . . ............ . . . . . . ... .
lowQualScore : 0 2222222 2222222222222222222 2 000 0 3 999999999999999999 9 4 9 8 4 11 1 888 9 8 4 4 4 11 4 2 9 7 9 1 8 22222 1 4 7 4 0 4 2 0 000 0 0 99 6 77 4 4 4 0 0 2 333333333333 7 0 3 3 3 7 777 3
consensus : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGT-T-T-T----TTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGA-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
Reference ( family-10502 ) : TTCATCATCTCTNGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGT-T-T-T----TTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGGTGA-AACT--AGATGGCACCCAGTCTCCCAAG---GACCGACTGGAACCCTTCGAGGGTGGGCTGGCTGACTACCTCAGGCGGAAGTCCGTTCCAGAGAACAATGGACGCCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCC-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATCGTTGCGACGGCGCT-GG-G-G-G-T--TTCCCACNTTAGGTCTACCAACATGTCAGTGACACTGCTGGTCCTTGTGTAGTCATGCTTGACAAATCGAGCTGCCCTACGCTGGACCATCTCNAGTTGGTTAATCAGGCAGTCAGTGTG-GGGGACC-A-ACAGTTGAGGAGTANTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTCGAC-TTGA-TTTTGATGAACATGATGCT--TATATTTCTCCTGATGAAGGACATGGTGAAGT
gi|1 : TTCATCATCTCTAGTAATCACATCCCTCA-------GGAA-------------------GAG-TATTCTCGCGATATGTTTAA---AATACTGAGCACTCGCAGCAGTCAAATCAGCTTTA-ATAGATAAACAATAAGT-TCT-T----TTTGTACAGT-GATATTAAAAGAAGATGAAAACATCAACAGTGA-ATTT--AGATGACACCCAGTCTTACAAG---GATCAACTGGAACCTTTCAAAGGTAGGCTGGCTGATTACCTCAGGTGGAAATCTGTTCTAGAGAACAATGGACACCGGATAGCGACTGTTCAGATATGCGCTTTTTTTCGCAGATAACTAGACAAACTGATGATTTTGTCCT-CTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTAGAAC-ATTGTGACCCGGGCATTGTTGCAATGGCGCT-TG-G-G-G-T--TTCATACATC-GGTCTACCAACATATCAGTGACAATGCTAGTTCTTGAGAAGTCATGCTTGACAAAACGAGCTGCCTTACACTGGACCATCACTAGTTAGTTAACCAGGCAGTCAGTGT---------------------GAGTACTCTAGGATTGGCCGGACATATGTGCGGTATGCTTTTGACTTTGA-TTTTGATGAGCATGATGCTAATATATTTTTCCTGATGAAGGATATGGTGAAGT
gi|10 : TCATTATCTCTTTTAATCTCATCCTTCT-------AGAAGAGTATTAAAAAAATAGAAGAG-TATACATGTGATGCGGTTAACCAAAT---GAGCACTCGCAGCAGTCAGGTCCGCCTTTTACAGATAAA----AAAT-C-A-T----TGTATACAGT-GTCATT-AAAGCTGAT-AAAACATCAGCGTTGACAACT--AGATGGAATCCAGTTTCCCAAG---GATTGACTGGAACCC
gi|11 : tcattaTTCATCATCTCTTGTAAACGCA---------------GAA-------------------GAT-AATTTTTGTGATGTGGTTAA---AATACTAAGCACTTGCAGAAGTCAGATCAGC-TTATACAACTAAA----AAAT-T-T-T----TTTA-AAAGTAGGTATTGAAAg
gi|12 : GTCCACCAACATGTCAGTGCGGCTGCTGGCCCTTGTATTGTCATGCTTGACAAATAGAGCTTCCCC-------ACCATCTCAAGTTGGTTAATata
gi|13 : accaTTATCATCTCTTGTATTCACATCACTCT-------AGAA-------------------CAG-TATTCATGCGATGTAGTTAA---ACAGCTGAG
gi|14 : atcaTCATTATCTCTAGTAATCGCATCCCTCTTCCCCTCTGAA-------------------GAG-TATTCTTG
gi|15 : aTCATCATCTCCTGTGATCGCATCCCTCT-------AGAG-------------------GAG-TATTCTCGCgg
gi|16 : atcaacaTCATCATCTCTAGTAATCGCATCTCTCT-------GGAA-------------------GAG-TATT
gi|17 : tccTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAG-TATTCattgt
gi|18 : gtcaTCATCATCTCTTGTACTCGCATCAATCT-------GGAA-------------------GCG-TATTCTgc
gi|19 : atgaTCATCATCTCTAGTAATCGCATCCCTCT-------GGAA-------------------GAGTTATTCTCG
gi|2 : aAATCGCATCCCTCT-------TGAA-------------------GAA-TATTCTCGCGATGTGGTTAA---AATACTGAGCACTCGCAGTAGTCAAATCAGCTTTTT------------------------------GTACAAT-GATATTAAA----------AACATCAACGGTGA-AACT--AGATGACACCCAATCTCACAAG---GACCGAATGGAACCTTTTGAGGGTGGGCTGACTGACTACCTCAGGTGGAAGTCTGTTCAAGAAAACAATGGACACCGGATAGCAACTGTTCAGATATGCGCTTTTCTTCGCAGATAATTGGATAAACTGATG--------------GTGGAATTTCTAGTTTGTCT-AAATGGAGGACTTGGTTTGGTGTCAATTAGGTTGTTGTAGA-TATTGAAGAAC-ATTGTGTCCCGAGCAATGTTGCGACGGTACT-GG-A-GTG-T--TT-CTATCTTAGGTCTACCAACA
gi|20 : TCATCATTTCTAGTAACCACATTCCTCT-------GGAA-------------------GAT-AATTCTCGctgctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|22 : CATCATCTCTCGTAATCGCATCCCTCT-------GGAA-------------------GAG-t
gi|3 : ccGCATCACTCT-------AGAA-------------------GAG-TATTCAGGCGATGTGGTTGA---AATACTGAGCACTCGCAACAGTCAGTTTA--TTTCCACAGATATA----AA-------------TT---CAGT----ATTAAAATCAGATAAAAACTTCAACGGTGA-AACT--AGATGGTACCTAACCGCCAAAG---GGCCGAATGAAACCCTCCGAGGGTGGACTGGCTGGATATCTCGGGTGAAAGCCAGTTCCGGATAACAATGAACTCTG---------------AATATGTGGTTTTATTTGCAGATAACATGTTAAACTGATAATTGTG-CTC-TTTGTAGAATTTCCAATTCGTCT-AAGTGGATATCTTGCTCTGATGTCAACAAGGTCGTTGT-TA-CTTTGAAGAAC-ATTGTTACCCGGTCATCGATGAGACGGCGTT-GGAG-G-G-T--TTCCTATTTTAAGTCCACCAAAA----------------------TATATAGTTATATTTGACAAATCTAGCTGCTCTACGCTGGACCAACTCCAGTTTGTTAATCTGTCAGTCAGTGTGTGGAGACC-ATACAGTTGAAGAGTATTCTAGGATTGGCCGGATA---------TATGCTTTCGAC-TTGACTTTTGGTGAACATGGTGCT--T-TATTTCTCCTGATGCAGGACATGATGAAGTaaa
gi|4 : ATATTAAAAGAAGGTAAAAACATTAACGGTGA-AACT--AAATGACACCCAGTCTTCCAAA---GGCCGACTGGA-CCCTTCGAGGGTGAGTTGGCTGGCTACCTCAGGCGGGAGTCCGTTCCAGAGAACAATGGACGCCGGATAATAACTGTTCAGATATGCGCTTTTCTTCGCAGATAGCTTGATAAATTGATGAGTGTG-CTC-CTTGTTGAATTTCTAGTTTGTCT-AAGTGGATGACTTGGTCTGGTGTCTACTAGGTTATTGTAGT-TTGTGTAGAAC-ATTGTCACCCGGGCATTGCTGTGACGGCA-T-AG-A-A-G-TGGTTCCCACTTTAGGTCTACCAACATTTCGGTGACACCTTCAGTCCTGGCGTAGTCATGCTTGACAAAACGAGCTGCCCTGCGCCGGACCATCTAAAGCTGGTTAATCAGGCAATCAGTATGAGGGGACCAA-ACAGTTGAGGAGTAGTCTAGGATTGGCTAGACATATGTGCGGTATGCTTTCGAC-TTGG-CTTTGATGAA-ATAATGC---TATTTTTCTCCGGATGAAGGGCATGGTGGAGT
gi|5 : ATCATCTCTAGTGGTCGCGTCCCTCT-------GGAA-------------------GAG-AATTATCGCAATGTGGTTTA---AATATTGAGCAATCGCAGCGGTCGG-----CTTTTTACAGATAAA----AAGTAC-T-T----TTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAACGATAA-AACT--AGATGGCACAGAGTCACTAAAG---GACCAACTGGAACCCTTCGA--GTGGACTGGCTGACTAACTCAGTCGGAAGTCTATTCCAGAGAACA---------GGAT--CAACTGTTCAGATATGCACTTTTAATCGCAGATAACTGGATAAACTGATGATTGTG-CCCGCTTGTGGAACTTCTAGTTTGTCT-AAATGGA------GGTCTGATGTCAACTAGGTTGTTGTAGA-CTTTGTAGAAC-ATTGTGAACCTTGTATTGTTGCTACGGCGCTAGA-G-G-G-T--TTCCCAC
gi|6 : atcatcatCTTT-------GGAA-------------------GAG-TAATCTTGCGTTTGGGTTAA---AAGACTGAGCATTTGCAGCAGTCAGATCAGCTTTTTACAGATAAA----AAGT-T-TAC----TTTGTACAGT-GATATTAAAAGAAGGTAAAAATATCAATGGTGA-ACCTTAAAATGACATCCAGTCTGCAAAG---GA-------------TTC--GGGTGGG----------------------AGCCTGCTCCAGAGAGCAATGGACGCCGGATAGTAGCTGTTCAGATATGCGCTTTT-TTTGCTGATAACTGGATTAAGTGATGATTGTGACCC-CATGTCAAATATCTAGTTTGTTTAAAGTTGAGGATTTGGTCTGGTGTCAACTAGGTTGTTGTAGA-TTTTGTTAAACAAATG-GACCAGGGCATTGTTAAGGTGGCCCT-GGAG-G-G-T--CTCTCACATTAGATCTACCAACATGTCAGTGACACTGCTAGTCCt
gi|7 : CATCCCTCT-------AGAA-------------------GAG-TATTCTCGCGATGTGGTTAC---AATACTGACTACTTGCGGCAGTCAGATCAGCTTTATGCAAAT--A----AAGT-T-CGC----TTTATACAGA-GCTATTAAAACTAAATACATATTTTAACGATGA-AAGT--AGATGGCAATCAGT----CAAGAATAACCT-CTGGAG-CCTCCCATGGTGGGCTG-------ACCTCAAG-----------------------TGGACGCCGTACAGAAACTGTTCAGATATGCGGACTTCTTTACATATATTTTGATGAACTAATAG-----------TTGTGGAATTTC----TTGC-----GTGAA--ACTTCGTCCGGTGCCAACTAAGTTGTTATAGAGTGTTATAGAAC-ATCTTGACTC-GGCATCGTTGTGACGGCGCT-GG-A-G-GCT--TTCCCAC----------------TG-CACTGGCACTGTTGGTCCCTGTGTAGTCATGTTTGACAA
gi|8 : TCCCATCCTTCT-------GGAA-------------------GAG-TATTCTTGCGATGTGGTTAA---AATTCTGAGCACTCCCAGCAGTCAGATCAGCTTTTTACAGATAAA----A-GT-T-T-TTTTTTTTGTACAGT-GATATTAAAAGAAGATAAAAACATCAAAGGTGA-AACT--AGATGGCACACAATCTCCCAAG---GGCCAACTGGAACCCTTTGAGGGTGGGCTGGCTGACTACCTCAGGTAGAAGTTCATTCCAGAGAATAATGGACATCGGATAGTAACTGTTCAGATATGCAC--TTCTTCGCAGATAACTGGATAAACTGATGATTGTG-CCCTCTTGTGGAATTTCTAGTTTGTCT-AAGTGGAGGACTTGGTCTGGTGTCAGCTAG---GTTGTAGA-TTTT
gi|9 : GGGAACAATAAATGCTGGATAGAAACTGTTCAATTATGGGATATTCTTTGCAGATAACTGGATAAACTTATTATTGTGTCCC-CTTGTGGAATTTCTAGTTTATAT-AAGTAAAGGACATGTTTTGGTGTTAACTAGGTTGTTGTAGA-TTTTGTAGAAT-ATTGAAACCAGGGCATCATTTTGACTGCACT-GA-ACG-G-T--TTCCCAGTTAAAGTCTACCAAAATGTCAGTGACACTGCTGGTCATTGTGTAGTCATGTTTGACAAATCAAGCAGCGCTTTGCTAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATTCATCATTATATCTTGATTATATTTATAAAATCTTGTT