lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 222 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 2222 33 1
lowQualScore : 5 2 111 55 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 1 1 4 77777 8888 7 66 2 6
lowQualScore : . . ... .. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . . ..... .... . .. . .
lowQualScore : 0 2 111 99 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 2 0 7 33333 3333 7 77 0 0
consensus : GTGGTGAAACTT-CGATAACTCGAGCATTAAAAA--C---------TC---GA-----GC-CA-------A--T--G------------AG------GAAACT--GTN--------TGGT-CC-GA-CG---A----------AT----------TT-------------C-A---------TGTA--------CAC---TTTA-CTTG-CG-ATATCTCGAGCATCA-GAAA-CTTGAAAACTCAAG--GTCCGGTGACAGTCCCTTCAA---A-TTT---TCAT-ATAAAATACCAT-TTTAG-ACTCG--AAGACACCA--T---A-CNNTGT-CTGATGTTT---ACAT-----TACTTTCATTTTACCCATTTCGT--CTG-AG-----TGC-A----------GT--G--ATAATC--TTTTA-GCACCTCC-----GTTTTTCACA--TC--TGTTTT-AATTT---GA-AGGTATACCCTACTTNNNNTCCCNATCATATAATCT-----AAATA-GAG---NT----------TG-ATCGCACTTCTTTTGATCGGCATNT-TTT-TA----ANTAAAAACATTAGTTTACAGTG
Reference ( gi|3 ) : GTTGTGAAATTG-CAATAACTTGAGCATCGAAAA--C---------TT---GA-----AC-CA-------A--T--G------------AA------GAAACT--ATG--------TGGT-CC----CA---A----------AT----------TT-------------C-A---------TGTA--------TAC---TTTA-CTTG-CA-ATAGCTAGAGTATTATGAAA-CTTGAAAACTTGAG--GTACGGTGACAATCCCTTCAAGTTA-TAT---CCAT-ATAAATTACTAT-TTTAG-GCTCG--GAAACACC---T---A-CTTTGG-CTGATGTT----ACAT----GTACTTTCATTTTACCCACTTTGT--CTG-AG-----TGT-A----------GT--G--ATGATT--TTTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AATTT--GGATAAGAA----CTA-TTGGACATTTAATCCTATAATCTTGCAGGAAT--GAG---GT----------TG-ATTGCACTTCTTTTGATTGGTATAT-TCT-TA----AATAAAA--ATTAGTTCACAGTG
gi|5 : GTGGTGACACTT-TGATAACTTGAGCA---AAAA------------------A-----AT-C-----------TC-G------------AG------GAAACT--ATG----------GTACCAAA-CA---A----------AT----------TTGCTCATATTTTGTT-A---------TGTACTAGTATATAC---TTTA-CTTT-CA-ATAGC------ATCA-GAAA-CTAAAAAACTGAAA--GTATGGTGACCGTCCTTTTGAAATATTTT---TCATAATAAA-TACTAT-TTTAA-ACTCA--AGGACACCAT-T---A-CTGTG---TG-TGTTTGCAAAATTTAACTACTTTCATTTCACCTATTTTGTTGCTGCAT-----TGC-AAGTTGACAATGT--C--ATGTTC--TTTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AATTT--
gi|2 : tGTGAAATTT-TTATAACTCAAGTAT--AAAA--C---------TT---GG-----CG-AA-------A--T--CT-----------AG------GAAACT--GTT--------TGGT-ATTGAACA---ATGCTGTACATAT----------TT-------------C-A---------TATA--------CAC---A--A-CTTT-GG-ATATTCCGAGCATC-TAAAA-CTAGCACACTTCAG--TTCTGGTAACATTCCCTTCAA--CA-TATTTGTCAT-AAAAAATACCAT-GTAAG-ATTTG--AGGACACC---T---G-TGTTTG-C-AA--------ACA---------------TTTACACATTTTGT--CTG-AAAATACTGC-T----------GT--GT-ATAATCTGTTTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTT--TGA-AGGTATACCCTACTTGGAGTTCCCATCATATA---CTGGAAATAT--GAG---CTGGACTTTTTCTA-ATCACATTTCTTTTGATTGGCATGTCTTT-TAATTGAATAAAAATATTGATTTACAG
gi|1 : caGCGAAACTT-CAATAACGTGAGTGCTGAAAA--C---------TC---AA-----GCACA-------A--T--T------------GG------CCAACTTAACGATATAGTTTGGT-CC----CGCACA----------AT----------TT-------------T-ACTCATATTTTATA--------TACATATTTATTTTGTCAGATATCAAAAGC-TTCGAAAA-CTCGAAAGCTTGAT--ATCCCATGACAGACCCTGCAA------------CAT-AT---TTTTCATATGTAGAGCTCC--AAGACACCAGTC---ATCTGTGT-TTGATTTTTTTCACAT----AATTTTTCAATTTACTT-TTTTAT------AG-----TGT-CT---------GT--GGTACAATG--TGTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-ATTTT----------------TA-TTTTTCTCTCA--CCTATAATTT-----GAACA-GAGCTTTT----------TG-ATTTCACATCTTTTGATctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|9 : GTGAAACTT-AAATAACTTGAACATCAAATA--A---------TC---AA-----GC----------A--T--GTCTGTTAGCTCAAG------GAAAGT--GTA--------TGAT-CTTGA-CA---A----------GTCTATGCATGTTT-------------C-A---------TGTA--------CAC---ATTA-TTTT-TG-ATATCATGTGCATTA-GAAA-CTTGAAAACACATG--GTCTGGTAACAGTTCaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|15 : acaGTGAAATTTTCAATAA--TGAGCATTCAAAA--CAGGAGCACATTGGCGA-----AC-T-----------T--G------------AA------GTAACT--A----------TGGT-CC----TG---AAC--------AT----------TT-------------CTG---------TGCA--------TAT---TTa
gi|10 : tacaTGAAACTT-TGATAACTTGAGCATAAAAAAAAC---------T----AA-----AG-CAT------A--TC-G------------GATAACTCGAAACT--GTA--------TAAT-CT----GG---A----------ATAA--------TT-------------C-T---------CG-G--------CAC---ATTA-CTTG-CA-ATATCTCAAGCATAA-GAAA-CTTGAAAACTCAAG--GTCCAGTGACAGT
gi|13 : TGAAACTT-TGATGACTCAAACATTAAAAA--C---------TT---CACATCAGC-CG-------A--TTTG------------AG------CAAACT--ATG--------TAGT-CC----TAAACA----------AT----------TC-------------T-G---------TGTA--------TAT---TTCA-tgcatg
gi|8 : acacatAAACTC-CAATAGCTGGTGCTTCAAAAA--C---------TT---GA-----GCACATTGGCTGATTT--G------------AG------GAAACT--GTT--------TGGC-CCTGAACA---ATCCTGTGCATAT----------TT-------------C-A---------TATT--------CAC---ATTA-CTTG-CA-CTATATCAAGCAACATAAAA-CCAGAAAACTCAAG--ATCCAGTGACtatacact
gi|6 : gca------GAAACT--ATT--------CAG--CG----CA---C----------AT----------TT-------------C-A---------TATG--------CAT---TTTT-CTTG-TG-AAAACTCGAGTATCA-GAAA-CTTctagcaacatattgttcat
gi|7 : -A---------TGTA--------CAA---TTTA-CTCG-CA-ATAACTCAACCA--ACAAAATCTTGAAAACTCAAG--TTACAGTGACAGTACCTTCAA------------CAT-AGAAAATACTAT-GTTAG-ACT-----AGACATC------------------AATGTT----------------TTTCGTTTGACCCATTTAGT------AA-----TTA-A----------TT--G--GTAATT--AGTTG-GTACA-----------TTGCA-A--TC--TGTTTT-AATTT--agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|16 : AGCATCA-GAAA-CTT-AAAACCT-AGTTGTTCAGTGACTGCCCCTTAATGTAA-TTA---CCAT-GTTAAATACCAT-TCAAA-ACTCG--AATACAC
gi|6 : AT-TTTAG-ACTCGAGGAAACATT---TTACA-CATTATTCTGATG--------------GTACTTTCATCTTACCCACTTCAT--CTG-TG-----CATAA----------GTAGG--GTG------TTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAATTTAAGGATAA
gi|12 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaTCATATAATCT-----AAATAGGAG---AT----------TTTACTGCACTTCCTTTGATTGGTATTT-TCTCTA----ATTAAAAACATTA-TTTACAATGataatgaagaaattta
gi|4 : tatgcT----------TG-ATTGCACCGTTTTTTATCAGCATAT-GTT-TA----ACTAAAT--ATTAGTTTACAattatcactgtaaatgtttgaataatct
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|14 ): AAATTCTTATAACAAGTGCACGGAAATTTGATAACTTGAGCAAATACGCTAACTCCAGTTCTGAACAATGCTGTGCATATTTCATATACATGTTACTT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|18 ): CAATACAGTGAATATACTGCGATAACTGGAGCATGAATAACTCGTGAACATTGGCAAATTGAGGTAACTGTATGGTCCT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 1111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111 555555555555555555555 111111111111111111111111111111111111111111 555555555555555555555555555555555555555555555 222222 111111 33333333333 11 22222 1111 55555555555555555555555 111 2222 111
lowQualScore : 2 777 4 0 5 8 55 4 0000000 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33333333 55 77777 4 11 8 0 3 66 0 666666666666666666666 55 2 1 5 000000000000000000000000000000000000000000 1 6 3 4 888888888888888888888888888888888888888888888 88 2 000000 2 000000 6 6 88888888888 3 4444 22 44 3 1 00000 0000 88888888888888888888888 2 2 1 777 1111 1 666 6
lowQualScore : . ... . . . . .. . ....... .................................................................................................................................. ........ .. ..... . .. . . . .. . ..................... .. . . . .......................................... . . . . ............................................. .. . ...... . ...... . . ........... . .... .. .. . . ..... .... ....................... . . . ... .... . ... .
lowQualScore : 5 000 0 5 5 0 55 0 4444444 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222222 44 00000 9 22 0 3 7 11 1 222222222222222222222 88 2 3 7 000000000000000000000000000000000000000000 0 7 5 8 777777777777777777777777777777777777777777777 88 2 333333 5 222222 7 7 33333333333 7 0000 77 22 6 4 00000 0000 22222222222222222222222 8 0 0 000 2222 0 888 5
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATNAAAAA--C-TC--G----AGCA----CA-------A-T-TG------------AG-------GAAACT----------G-------TNTGGT-----------CC--G-A-CAA----------AT----------TT-------------CATGTAC--------AC-TTTACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAG--GTCCGGTGACAGTCCCTTCA---A---A----TT---T-T-CATANNAAATACTATTTTAGA-CTCGAGGACAC----CA--CA-CT-TGT-CTG------ATGTTT---ACAT--ACTTT-CATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG-A-TA--A--------TN--T-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTGAGGATA-G--CTACTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATAT-T-TTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTGGTGAA---ACTT-CGATAACTCGAGCATTAAAAA--C-TC--G----AGC-----CA-------A---TG------------AG-------GAAACT----------G-------TNTGGT-----------CC--G-A-CGA----------AT----------TT-------------CATGTAC--------AC-TTTACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCAAG--GTCCGGTGACAGTCCCTTCA---A---A----TT---T-T-CATATAAAATACCATTTTAGA-CTCGAAGACAC----CA--TA-CNNTGT-CTG------ATGTTT---ACAT-TACTTT-CATTTTACCCATTTCGT--CTG-AG-----TG-CAG--TG-A-TA--A--------TC--T-TTTA-GCACCTCC-----GTTTTTCACA--TC--TGTTTT-AA-TTTGAAGGTATACCCTACTTNNNNTCCCNATCATATAATCT-----AAATA-G-AG---NT----------T-----G-ATCGCACTTCTTTTGATCGGCATNT-T-TTTA----ANTAAAAACATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TC--A----AGCA----CA-------A---TT------------GG-------CCAACTTAACGATATAG-------TTTGGT-----------CCC-GCA-CAATTTTACTCATAT----------TT-------------TATATAC--------ATATTTATTTTGTCAGATATCAAAAGCTTCG-AAAACTCGAAAGCTTGAT--ATCCCATGACAGACCCTGCA---ACATA----TT---T-TTCATATG-----------TAGAGCTCCAAGACAC----CAGTCATCTGTGT-TTG------ATTTTTTTCACAT-AATTTTTCAATTTACTT-TTTTAT------AG-----TGTCTG--TG-G-TACAA--------TG--T-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT-----TA--------TTTTTCTCTCA--CCTATAATTT-----GAACA-G-AGCTTTT----------T-----G-ATTTCACATCTTTTGAT
gi|10 : TGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TA--A----AGC-----AT-------A---TC------------GGATAACTCGAAACT----------G-------TATAAT-----------CT--G----GA----------ATAA--------TT-------------CTCG-GC--------AC-ATTACTT-GC--AATATCTCAAGCATAA-GAAACTTGAAAACTCAAG--GTCCAGTGACAGTaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATA-GGAG---AT----------T-----TTACTGCACTTCCTTTGATTGGTATTT-TCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTC--ACATCAGC-----CG-------ATT-TG------------AG-------CAAACT----------A-------TGTAGT-----------CCTAA-A-C-A----------AT----------TC-------------TGTGTAT--------AT-TTCAattatcactgtaaatgtttgaataatct
gi|15 : acacatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AG--G----AGCA----CA-------T---TG------------GC-------GAACTT----------GAAGTAACTATGGT-----------CC------TGAAC--------AT----------TT-------------C-TGTGC--------Atatacact
gi|16 : tacaAGCATCA-GAAACTTAAAACCT--AGTTGTTCAGTGACTGCCCCTTAATGTA---A----TT---A-C-CATGTTAAATACCATTCAAAA-CTCGAATACAC----tattt
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCGTG----AACATTGGCA-------AAT-TG------------AG-------GTAACT----------G-------TATGGT-----------CC--
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TT--G-----GC-----GA-------AATCT-------------AG-------GAAACT----------G-------TTTGGTATTGAACAATGCT--GTA-CAT----------AT----------TT-------------CATATAC--------AC-A--ACTT-TG--GATATTCCGAGCATCT-AAAACTAGCACACTTCAG--TTCTGGTAACATTCCCTTCA---ACATA----TT---TGT-CATAAAAAATACCATGTAAGA-TTTGAGGACAC----C---------TG------------TGTTT---GCA---AA----CA-TTTACACATTTTGT--CTG-AAAATACTG-CTG--TGTA-TA--A--------TCTGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTGAAGGTATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATG-AG---CTGGACTTTTTCT-----A-ATCACATTTCTTTTGATTGGCATGTCT-TTTAATTGAATAAAAATATTGATTTACAGt
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TT--G----AAC-----CA-------A---TG------------AA-------GAAACT----------A-------TGTGGT-----------CC------CAA----------AT----------TT-------------CATGTAT--------AC-TTTACTT-GC--AATAGCTAGAGTATTATGAAACTTGAAAACTTGAG--GTACGGTGACAATCCCTTCA---A---G----TTATAT-C-CATATAAATTACTATTTTAGG-CTCGGAAACAC----C---TA-CTTTGG-CTG------ATGTT----ACATGTACTTT-CATTTTACCCACTTTGT--CTG-AG-----TG-TAG--TG-A-TG--A--------TT--T-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTTG--GATAAGAACTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--G-AG---GT----------T-----G-ATTGCACTTCTTTTGATTGGTATAT-T-CTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : ATCGTATAATTT-----AAACA-A-AA---TT----------TCTTTTG-ATTGCACCGTTTTTTATCAGCATAT-G-TTTA----ACTAAA--TATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaaGTGGTGAC---ACTT-TGATAACTTGAGCAAAAAAAT--C-TC--G----AG------------------------------------------GAAACT-------------------ATGGTA----------CC--A-AACAA----------AT----------TTGCTCATATTTTGTTATGTACTAGTATATAC-TTTACTT-TC--AATA------GCATCA-GAAACTAAAAAACTGAAA--GTATGGTGACCGTCCTTTTG---A---AATATTT---T-T-CATAATAAATACTATTTTAAA-CTCAAGGACAC----CAT-TA-CTGTGT-GTGTTTGCAAAATTT---A-AC-TACTTT-CATTTCACCTATTTTGTTGCTGCAT-----TG-CAAGTTG-A-CA--ATGTCATGTTC--T-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t-------GAAACT----------A-------TTCAG-------------C--GCA-C------------AT----------TT-------------CATATGC--------AT-TTTTCTT-GT--GAAAACTCGAGTATCA-GAAACTT
gi|6 : ATTTTAGA-CTCGAGGAAACATTTTA--CA-CATTATTCTG------ATGGT----------ACTTT-CATCTTACCCACTTCAT--CT---G-----TG-CA---TA-AGTA--G--------GG--TGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTAAGGATAagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaATGTAC--------AA-TTTACTC-GC--AATAACTCAACCAACA-AAATCTTGAAAACTCAAG--TTACAGTGACAGTACCTTCA---A-----------------CATAGAAAATACTATGTTAGA-CT---AGACAT----CA---------------------ATGTT------------TTT-CGTTTGACCCATTTAGT------AA-----TT-AAT--TG-G-TA--A--------TT--A-GTTG-GTACA-----------TTGCA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TT--G----AGCA----CATTGGCTGATT-TG------------AG-------GAAACT----------G-------TTTGGC-----------CCTGA-A-CAATCCTGTGCATAT----------TT-------------CATATTC--------AC-ATTACTT-GC--ACTATATCAAGCAACATAAAACCAGAAAACTCAAG--ATCCAGTGAC
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TC--A----AGC--------------A---TGTCTGTTAGCTCAAG-------GAAAGT----------G-------TATGAT-----------CTT-G-A-CAA----------GTCTATGCATGTTT-------------CATGTAC--------AC-ATTATTT-TT--GATATCATGTGCATTA-GAAACTTGAAAACACATG--GTCTGGTAACAGTTCctagcaacatattgttcat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|14 ): AAATTCTTATAACAAGTGCACGGAAATTTGATAACTTGAGCAAATACGCTAACTCCAGTTCTGAACAATGCTGTGCATATTTCATATACATGTTACTT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 1111111111 11111111 5555555555555555555 222222222222222222222222222222222222222222222222222 55555555555555555555555555555555555555 1111111 111111 66666666666666 111 22222 1111 55555555555555555555555 111 1111 11
lowQualScore : 1 777 4 0 5 6 55 4 000000 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33333333 44 0 4 6666666666 8 4 1 66666666 0 6666666666666666666 22 1 5 111111111111111111111111111111111111111111111111111 3 88888888888888888888888888888888888888 1 6 77 9999999 2 000000 6 6 00000000000000 0 1 555 3 1 1 00000 0000 88888888888888888888888 2 999 7777 1 11 0 6
lowQualScore : . ... . . . . .. . ...... ................................................................................................................................. ........ .. . . .......... . . . ........ . ................... .. . . ................................................... . ...................................... . . .. ....... . ...... . . .............. . . ... . . . ..... .... ....................... . ... .... . .. . .
lowQualScore : 0 000 0 5 5 3 55 0 888888 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222 22 1 4 7777777777 0 0 7 11111111 1 2222222222222222222 00 3 7 888888888888888888888888888888888888888888888888888 5 00000000000000000000000000000000000000 0 7 00 7777777 5 222222 7 7 22222222222222 7 0 000 2 0 4 00000 0000 22222222222222222222222 0 888 0000 0 22 8 4
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A-TCG--------AG------GAAACT----------G-------TNTGGT-----------CC--G--A-CA-A----------AT----------TT-------------CATGTAC--------ACTTTACTTGCGATATCT-------CGAGCATCA-GAAACTT-GAAAACTCGAG--------GTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTGAGGAT---A----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCT-TTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTNGTGAA---ACTT-CGATAACTCGAGCATNAAAAA--C-TCG----AGCAC-------A-------A-TTG--------AG------GAAACT----------G-------TNTGGT-----------CC--G--A-CA-A----------AT----------TT-------------CATGTAC--------ACTTTACTTGCGATATCT-------CGAGCATCA-GAAACTT-GAAAACTCGAG--------GTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---ACA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTGAGGAT---A---GCTACTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATAT-T-TTTA----ANTAAAAATATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TCA----AGCAC-------A-------A-TTG---------G------CCAACTTAACGATATAG-------TTTGGT-----------CC--C--G-CACA----------AT----------TT-------------TACTCAT--------ATTTTATATAC-ATATTTATTTTGTCAGATATCA-AAAGCTTCGAAAACTCGAAAGCTTGATATCCCATGACAGACCCTGCA---AC--ATAT-TT---T-TCATATG-----------TAGAGCTCCAAGACAC------C-AGTCATCTGTGTTTGATTTTTTTCACA---------T--AATTTTTCAATTTACTT-TTTTAT------AG-----TGTCTG--TGGTA-CAA--------TGT-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT---------------TATTTTTC-TCTCA--CCTATAATTT-----GAACA-G-AGCTTTT----------T-----G-ATTTCACATCTTTTGAT
gi|1 : CATATCT-TTTA----ATT--AAATATTAATTTACAATGaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|10 : gcgaaacttcaataacgtgagtgctgaaaactcaagcacaattggccaacttaacgatatagtttggtcccgcacaattttactcatattttatatacatatttattttgtcagatatcaaaagcttcgaaaactcgaaagcttgatatcccatgacagaccctgcaacatatttttcatatgtagagctccaagacaccagtcatctgtgtttgatttttttcacataatttttcaatttacttttttatagtgtctgtggtacaatgtgttatcatcttcatttttcacatatgttttatttttatttttctctcacctataatttgaacagagctttttgatttcacatcttttgataaataattttcaccaattatttgaaacgattttttttatttTGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TAA----AGCAT-------A---------TCG--------GATAACTCGAAACT----------G-------TATAAT-----------CT--GGAA-TA-A----------TT----------CT-------------CG-GCAC--------A--TTACTTGCAATATCT-------CAAGCATAA-GAAACTT-GAAAACTCAAG--------GTCCAGTGACAGTttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATA-GGAG---AT----------T-----TTACTGCACTTCCTTTGATTGGTATTT-TCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTCACATCAGC-C-------G-------ATTTG--------AG------CAAACT----------A-------TGTAGT-----------CCTAA--A-CA-ATTCTGTGTATAT----------TT-------------CATATAC--------ACTattatcactgtaaatgtttgaataatct
gi|15 : acacatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AGG----AGCAC---------------A-TTG--------GC------GAACTT----------GAAGTAACTATGGT-----------CCT-G--A--A-C----------AT----------TT-------------C-TGTGC--------A
gi|16 : tacaAGCATCA-GAAACTT-AAAACCTAGTT--------GTTCAGTGACTGCCCCTTAATGTA---A----TT---A-CCATGTTAAATACCATTCAAAA-CTCGAATACAC------tattt
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCG----TGAACATTGGCAA-------A-TTG--------AG------GTAACT----------G-------TATGGT-----------CC--
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TTG-----GCGA-------A-------A-TCT--------AG------GAAACT----------G-------TTTGGTATTGAACAATGCT--GT-A-CA-T----------AT----------TT-------------CATATAC--------AC--AACTTTGGATATTC-------CGAGCATCT-AAAACTA-GCACACTTCAG--------TTCTGGTAACATTCCCTTCA---ACATA----TT---TGTCATAAAAAATACCATGTAAGA-TTTGAGGACAC------C----------TG-----TGTTT---GCA---------A--A------CA-TTTACACATTTTGT--CTG-AAAATACTG-CTG--TGT-A-TAATC------TGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTGAAGGT---ATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATG-AG---CTGGACTTTTTCT-----A-ATCACATTTCTTTTGATTGGCATGTCT-TTTAATTGAATAAAAATATTGATTTACAGt
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TTG----AAC-C-------A-------A-T-G--------AA------GAAACT----------A-------TGTGGT-----------CC-------CA-A----------AT----------TT-------------CATGTAT--------ACTTTACTTGCAATAGCT-------AGAGTATTATGAAACTT-GAAAACTTGAG--------GTACGGTGACAATCCCTTCA---A---G----TTATAT-CCATATAAATTACTATTTTAGG-CTCGGAAACAC------CTA--C--TT-TGGCTGATGTT----ACA---------TGTA--CTTTCATTTTACCCACTTTGT--CTG-AG-----TG-TAG--TG--A-TGA--------TTT-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTT--GGATAAGA---ACTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--G-AG---GT----------T-----G-ATTGCACTTCTTTTGATTGGTATAT-T-CTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : AATCGTATAATTT-----AAACA-A-AA---TT----------TCTTTTG-ATTGCACCGTTTTTTATCAGCATAT-G-TTTA----ACT--AAATATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaGTGGTGAC---ACTT-TGATAACTTGAGCA--AAAAA--A-TC---------------------------TCG--------AG------GAAACT-------------------ATGGTA----------CC--A--AACA-A----------AT----------TTGCTCATATTTTGTTATGTACTAGTATATACTTTACTTTCAATA-------------GCATCA-GAAACTA-AAAAACTGAAA--------GTATGGTGACCGTCCTTTTG---A---AATATTT---T-TCATAATAAATACTATTTTAAA-CTCAAGGACAC------C-AT-TA-C--TGTGTG-TGTTT---GCAAAATTTAACT--A--CTTTCATTTCACCTATTTTGTTGCTGCAT-----TG-CAAGTTG--A-CAATGTCATGTTCT-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t------GAAACT----------A-------TTCAG-------------C--G----CA-C----------AT----------TT-------------CATATGC--------ATTTTTCTTGTGAAAACT-------CGAGTATCA-GAAACTT-
gi|6 : ATTTTAGA-CTCGAGGAAACATTTTAC-A--CA-TT-ATTCTGATG--------G---------T--A--CTTTCATCTTACCCACTTCAT--CT---G-----TG-CA---TA--AGTAG--------GGTGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTAAGGAT---A---agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaATGTAC--------AATTTACTCGCAATAACT-------CAACCAACA-AAATCTT-GAAAACTCAAG--------TTACAGTGACAGTACCTTCA---A----------------CATAGAAAATACTATGTTAGA-CT---AGACAT------C-A--------------ATGTT-----------------------TTTCGTTTGACCCATTTAGT------AA-----TT-AAT--TG--G-TAA--------TTA-GTTG-GTACATT------G-----CA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TTG----AGCAC-------ATTGGCTGATTTG--------AG------GAAACT----------G-------TTTGGC-----------CCTGA--A-CA-ATCCTGTGCATAT----------TT-------------CATATTC--------ACATTACTTGCACTATAT-------CAAGCAACATAAAACCA-GAAAACTCAAG--------ATCCAGTGAC
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TCA----AGCAT-------G-------T-CTGTTAGCTCAAG------GAAAGT----------G-------TATGAT-----------CTT-G--A-CA-A----------GTCTATGCATGTTT-------------CATGTAC--------ACATTATTTTTGATATCA-------TGTGCATTA-GAAACTT-GAAAACACATG--------GTCTGGTAACAGTTCctagcaacatattgttcat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|14 ): AAATTCTTATAACAAGTGCACGGAAATTTGATAACTTGAGCAAATACGCTAACTCCAGTTCTGAACAATGCTGTGCATATTTCATATACATGTTACTT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111111 555555555555555555555 222222222222222222222222222222222222222222222222222 555555555555555555555555555555555555555 1111111 111111 44444444444444 111 22222 1111 55555555555555555555555 1 1111 11
lowQualScore : 1 777 4 0 5 7 55 4 000000 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33333333 555 77777 4 11 8 0 22 0 666666666666666666666 22 1 5 111111111111111111111111111111111111111111111111111 3 888888888888888888888888888888888888888 1 6 77 9999999 2 000000 6 6 99999999999999 1 555 3 1 1 00000 0000 88888888888888888888888 2 3 7777 1 11 0 6
lowQualScore : . ... . . . . .. . ...... ......................................................................................................................... ........ ... ..... . .. . . .. . ..................... .. . . ................................................... . ....................................... . . .. ....... . ...... . . .............. . ... . . . ..... .... ....................... . . .... . .. . .
lowQualScore : 0 000 0 5 5 3 55 0 888888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222 999 00000 9 22 0 3 66 1 222222222222222222222 00 3 7 444444444444444444444444444444444444444444444444444 5 000000000000000000000000000000000000000 0 7 00 7777777 5 222222 7 7 88888888888888 0 000 2 0 4 00000 0000 22222222222222222222222 0 2 0000 0 22 8 4
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--TCGAG------GAAACT----------G-------TNTGGT-----------CCT-G--A-CAA----------AT----------TT-------------CATGTAC--------AC-TTTACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-T-CATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG-A-TA--A--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--TCGAG------GAAACT----------G-------TNTGGT-----------CC--G--A-CAA----------AT----------TT-------------CATGTAC--------AC-TTTACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-T-CATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG-A-TA--A--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AGGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TCA----AGCAC-------A-------A--TTG-G------CCAACTTAACGATATAG-------TTTGGT-----------CCC-GC-A-CAATTTTACTCATAT----------TT-------------TATATAC--------ATATTTATTTTGTCAGATATCAAAAGCTTCG-AAAACTCGAAAGCTTGATATCCCATGACAGACCCTGCA---ACATA----TT---T-TTCATATG-----------TAGAGCTCCAAGACAC------C-AGTCATCTGTGTTTGATTTTTTTCACA---------T--AATTTTTCAATTTACTT-TTTTAT------AG-----TGTCTG--TG-G-TACAA--------TGT-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT---------------TATTTTTC-TCTCA--CCTATAATTT-----GAACA-G-AGCTTTT----------T-----G-ATTTCACATCTTTTGAT
gi|1 : CATATCTTTTA----ATT--AAATATTAATTTACAATGaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|10 : gcgaaacttcaataacgtgagtgctgaaaactcaagcacaattggccaacttaacgatatagtttggtcccgcacaattttactcatattttatatacatatttattttgtcagatatcaaaagcttcgaaaactcgaaagcttgatatcccatgacagaccctgcaacatatttttcatatgtagagctccaagacaccagtcatctgtgtttgatttttttcacataatttttcaatttacttttttatagtgtctgtggtacaatgtgttatcatcttcatttttcacatatgttttatttttatttttctctcacctataatttgaacagagctttttgatttcacatcttttgataaataattttcaccaattatttgaaacgattttttttatttTGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TAA----AGCAT-------A----------TCGGATAACTCGAAACT----------G-------TATAAT-----------CT--GGAA-TAA----------TT----------CT-------------CG-GCAC--------A---TTACTT-GC--AATATCTCAAGCATAA-GAAACTTGAAAACTCAAGGTCCAGTGACAGTttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATA-GGAG---AT----------T-----TTACTGCACTTCCTTTGATTGGTATTTTCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTCACATCAGC-C-------G-------AT-TTGAG------CAAACT----------A-------TGTAGT-----------CCTAA--A-CAATTCTGTGTATAT----------TT-------------CATATAC--------AC-Tattatcactgtaaatgtttgaataatct
gi|15 : acacatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AGG----AGCAC---------------A--TTGGC------GAACTT----------GAAGTAACTATGGT-----------CCT-G--A--AC----------AT----------TT-------------C-TGTGC--------A
gi|16 : tacaAGCATCA-GAAACTTAAAACCTAGTTGTTCAGTGACTGCCCCTTAATGTA---A----TT---A-C-CATGTTAAATACCATTCAAAA-CTCGAATACAC------tattt
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCG----TGAACATTGGCAA-------A--TTGAG------GTAACT----------G-------TATGGT-----------CC--
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TTG-----GCGA-------A-------A--TCTAG------GAAACT----------G-------TTTGGTATTGAACAATGCT--GT-A-CAT----------AT----------TT-------------CATATAC--------AC-A--ACTT-TG--GATATTCCGAGCATCT-AAAACTAGCACACTTCAGTTCTGGTAACATTCCCTTCA---ACATA----TT---TGT-CATAAAAAATACCATGTAAGA-TTTGAGGACAC------C----------TG-----TGTTT---GCA---------A--A------CA-TTTACACATTTTGT--CTG-AAAATACTG-CTG--TGTA-TA--ATC------TGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTG---AAGGTATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATG-AG---CTGGACTTTTTCT-----A-ATCACATTTCTTTTGATTGGCATGTCTTTTAATTGAATAAAAATATTGATTTACAGt
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TTG----AAC-C-------A-------A--T-GAA------GAAACT----------A-------TGTGGT-----------CC-------CAA----------AT----------TT-------------CATGTAT--------AC-TTTACTT-GC--AATAGCTAGAGTATTATGAAACTTGAAAACTTGAGGTACGGTGACAATCCCTTCA---A---G----TTATAT-C-CATATAAATTACTATTTTAGG-CTCGGAAACAC------CTA--C--TT-TGGCTGATGTT----ACA---------TGTA--CTTTCATTTTACCCACTTTGT--CTG-AG-----TG-TAG--TG-A-TG--A--------TTT-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTTGGATAAGA-A----CTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--G-AG---GT----------T-----G-ATTGCACTTCTTTTGATTGGTATAT-TCTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : AATCGTATAATTT-----AAACA-A-AA---TT----------TCTTTTG-ATTGCACCGTTTTTTATCAGCATAT-GTTTA----ACT--AAATATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaGTGGTGAC---ACTT-TGATAACTTGAGCA--AAAAA--A-TC----------------------------TCGAG------GAAACT-------------------ATGGTA----------CC--A--AACAA----------AT----------TTGCTCATATTTTGTTATGTACTAGTATATAC-TTTACTT-TC--AATA------GCATCA-GAAACTAAAAAACTGAAAGTATGGTGACCGTCCTTTTG---A---AATATTT---T-T-CATAATAAATACTATTTTAAA-CTCAAGGACAC------C-AT-TA-C--TGTGTG-TGTTT---GCAAAATTTAACT--A--CTTTCATTTCACCTATTTTGTTGCTGCAT-----TG-CAAGTTG-A-CA--ATGTCATGTTCT-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t------GAAACT----------A-------TTCAG-------------C--G----CAC----------AT----------TT-------------CATATGC--------AT-TTTTCTT-GT--GAAAACTCGAGTATCA-GAAACTT
gi|6 : ATTTTAGA-CTCGAGGAAACATTTTAC-A--CA-TT-ATTCTGATG--------G---------T--A--CTTTCATCTTACCCACTTCAT--CT---G-----TG-CA---TA-AGTA--G--------GGTGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTA---AGGATA----agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaATGTAC--------AA-TTTACTC-GC--AATAACTCAACCAACA-AAATCTTGAAAACTCAAGTTACAGTGACAGTACCTTCA---A-----------------CATAGAAAATACTATGTTAGA-CT---AGACAT------C-A--------------ATGTT-----------------------TTTCGTTTGACCCATTTAGT------AA-----TT-AAT--TG-G-TA--A--------TTA-GTTG-GTACATT------G-----CA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TTG----AGCAC-------ATTGGCTGAT-TTGAG------GAAACT----------G-------TTTGGC-----------CCTGA--A-CAATCCTGTGCATAT----------TT-------------CATATTC--------AC-ATTACTT-GC--ACTATATCAAGCAACATAAAACCAGAAAACTCAAGATCCAGTGAC
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TCA----AGCAT-------GTCTGTT-AGCTCAAG------GAAAGT----------G-------TATGAT-----------CTT-G--A-CAA----------GTCTATGCATGTTT-------------CATGTAC--------AC-ATTATTT-TT--GATATCATGTGCATTA-GAAACTTGAAAACACATGGTCTGGTAACAGTTCctagcaacatattgttcat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|14 ): AAATTCTTATAACAAGTGCACGGAAATTTGATAACTTGAGCAAATACGCTAACTCCAGTTCTGAACAATGCTGTGCATATTTCATATACATGTTACTT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 111111 55555555555555555555 111111 222222222222222222 1111 77777777777777777777777777777777777777 11111111 555555555555555555555 222222222222222222222222222222222222222222222222222 555555555555555555555555555555555555555 1111111 111111 44444444444444 111 22222 1111 55555555555555555555555 1 1111 11
lowQualScore : 1 777 4 0 5 7 55 4 000000 33333333333333333333 3 000000 666666666666666666 1 3 3333 4 99999999999999999999999999999999999999 33333333 555 77777 4 11 8 0 22 0 666666666666666666666 22 1 5 111111111111111111111111111111111111111111111111111 3 888888888888888888888888888888888888888 1 6 77 9999999 2 000000 6 6 66666666666666 1 555 3 1 1 00000 0000 88888888888888888888888 2 3 7777 1 11 0 6
lowQualScore : . ... . . . . .. . ...... .................... . ...... .................. . . .... . ...................................... ........ ... ..... . .. . . .. . ..................... .. . . ................................................... . ....................................... . . .. ....... . ...... . . .............. . ... . . . ..... .... ....................... . . .... . .. . .
lowQualScore : 0 000 0 5 5 3 55 0 888888 55555555555555555555 0 555555 666666666666666666 0 6 4444 0 00000000000000000000000000000000000000 22222222 999 00000 9 22 0 3 66 1 222222222222222222222 00 3 7 444444444444444444444444444444444444444444444444444 5 000000000000000000000000000000000000000 0 7 00 7777777 5 222222 7 7 22222222222222 0 000 2 0 4 00000 0000 22222222222222222222222 0 2 0000 0 22 8 4
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--TCGAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAAT--T----ATAT----------T-T-------------CATGTAC--------AC-TTTACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-T-CATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG-A-TA--A--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--TCGAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA----------AT----------T-T-------------CATGTAC--------AC-TTTACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-T-CATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG-A-TA--A--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TCA----AGCAC-------A-------A--TTG-G------CCAACTTAACGATATAG-------TTTGGT-CCC-GCA-CAATTTTACTCATAT----------T-T-------------TATATAC--------ATATTTATTTTGTCAGATATCAAAAGCTTCG-AAAACTCGAAAGCTTGATATCCCATGACAGACCCTGCA---ACATA----TT---T-TTCATATG-----------TAGAGCTCCAAGACAC------C-AGTCATCTGTGTTTGATTTTTTTCACA---------T--AATTTTTCAATTTACTT-TTTTAT------AG-----TGTCTG--TG-G-TACAA--------TGT-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT---------------TATTTTTC-TCTCA--CCTATAATTT-----GAACA-G-AGCTTTT----------T-----G-ATTTCACATCTTTTGAT
gi|1 : CATATCTTTTA----ATT--AAATATTAATTTACAATGaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|10 : gcgaaacttcaataacgtgagtgctgaaaactcaagcacaattggccaacttaacgatatagtttggtcccgcacaattttactcatattttatatacatatttattttgtcagatatcaaaagcttcgaaaactcgaaagcttgatatcccatgacagaccctgcaacatatttttcatatgtagagctccaagacaccagtcatctgtgtttgatttttttcacataatttttcaatttacttttttatagtgtctgtggtacaatgtgttatcatcttcatttttcacatatgttttatttttatttttctctcacctataatttgaacagagctttttgatttcacatcttttgataaataattttcaccaattatttgaaacgattttttttatttTGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TAA----AGCAT-------A----------TCGGATAACTCGAAACT----------G-------TATAAT-CTG-G-A-ATA----------AT----------TCT-------------CG-GCAC--------A---TTACTT-GC--AATATCTCAAGCATAA-GAAACTTGAAAACTCAAGGTCCAGTGACAGTttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATA-GGAG---AT----------T-----TTACTGCACTTCCTTTGATTGGTATTTTCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTCACATCAGC-C-------G-------AT-TTGAG------CAAACT----------A-------TGTAGT-CCTAA-A-CAATTCTGTGTATAT----------T-T-------------CATATAC--------AC-Tattatcactgtaaatgtttgaataatct
gi|15 : acacatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AGG----AGCAC---------------A--TTGGC------GAACTT----------GAAGTAACTATGGT-CCT-G-A--AC----------AT----------T-T-------------C-TGTGC--------A
gi|16 : tacaAGCATCA-GAAACTTAAAACCTAGTTGTTCAGTGACTGCCCCTTAATGTA---A----TT---A-C-CATGTTAAATACCATTCAAAA-CTCGAATACAC------tattt
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCG----TGAACATTGGCAA-------A--TTGAG------GTAACT----------G-------TATGGT-CCT-
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TTG-----GCGA-------A-------A--TCTAG------GAAACT----------G-------TTTGGT-ATT-G-AACAATGCTGTACATAT----------T-T-------------CATATAC--------AC-A--ACTT-TG--GATATTCCGAGCATCT-AAAACTAGCACACTTCAGTTCTGGTAACATTCCCTTCA---ACATA----TT---TGT-CATAAAAAATACCATGTAAGA-TTTGAGGACAC------C----------TG-----TGTTT---GCA---------A--A------CA-TTTACACATTTTGT--CTG-AAAATACTG-CTG--TGTA-TA--ATC------TGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTG---AAGGTATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATG-AG---CTGGACTTTTTCT-----A-ATCACATTTCTTTTGATTGGCATGTCTTTTAATTGAATAAAAATATTGATTTACAG
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TTG----AAC-C-------A-------A--T-GAA------GAAACT----------A-------TGTGGT-CC------CAA----------AT----------T-T-------------CATGTAT--------AC-TTTACTT-GC--AATAGCTAGAGTATTATGAAACTTGAAAACTTGAGGTACGGTGACAATCCCTTCA---A---G----TTATAT-C-CATATAAATTACTATTTTAGG-CTCGGAAACAC------CTA--C--TT-TGGCTGATGTT----ACA---------TGTA--CTTTCATTTTACCCACTTTGT--CTG-AG-----TG-TAG--TG-A-TG--A--------TTT-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTTGGATAAGA-A----CTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--G-AG---GT----------T-----G-ATTGCACTTCTTTTGATTGGTATAT-TCTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : AATCGTATAATTT-----AAACA-A-AA---TT----------TCTTTTG-ATTGCACCGTTTTTTATCAGCATAT-GTTTA----ACT--AAATATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaGTGGTGAC---ACTT-TGATAACTTGAGCA--AAAAA--A-TC----------------------------TCGAG------GAAACT-------------------ATGGTACCA-A-A-CAA----------AT----------T-TGCTCATATTTTGTTATGTACTAGTATATAC-TTTACTT-TC--AATA------GCATCA-GAAACTAAAAAACTGAAAGTATGGTGACCGTCCTTTTG---A---AATATTT---T-T-CATAATAAATACTATTTTAAA-CTCAAGGACAC------C-AT-TA-C--TGTGTG-TGTTT---GCAAAATTTAACT--A--CTTTCATTTCACCTATTTTGTTGCTGCAT-----TG-CAAGTTG-A-CA--ATGTCATGTTCT-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t------GAAACT----------A-------TTCAGC-------G-CAC----------AT----------T-T-------------CATATGC--------AT-TTTTCTT-GT--GAAAACTCGAGTATCA-GAAACTT
gi|6 : ATTTTAGA-CTCGAGGAAACATTTTAC-A--CA-TT-ATTCTGATG--------G---------T--A--CTTTCATCTTACCCACTTCAT--CT---G-----TG-CA---TA-AGTA--G--------GGTGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTA---AGGATA----agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaATGTAC--------AA-TTTACTC-GC--AATAACTCAACCAACA-AAATCTTGAAAACTCAAGTTACAGTGACAGTACCTTCA---A-----------------CATAGAAAATACTATGTTAGA-CT---AGACAT------C-A--------------ATGTT-----------------------TTTCGTTTGACCCATTTAGT------AA-----TT-AAT--TG-G-TA--A--------TTA-GTTG-GTACATT------G-----CA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TTG----AGCAC-------ATTGGCTGAT-TTGAG------GAAACT----------G-------TTTGGC-CCT-GAA-CAATCCTGTGCATAT----------T-T-------------CATATTC--------AC-ATTACTT-GC--ACTATATCAAGCAACATAAAACCAGAAAACTCAAGATCCAGTGAC
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TCA----AGCAT-------GTCTGTT-AGCTCAAG------GAAAGT----------G-------TATGAT-CTT-G-A-CAA----------GTCTATGCATGTT-T-------------CATGTAC--------AC-ATTATTT-TT--GATATCATGTGCATTA-GAAACTTGAAAACACATGGTCTGGTAACAGTTCctagcaacatattgttcat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|14 ): AAATTCTTATAACAAGTGCACGGAAATTTGATAACTTGAGCAAATACGCTAACTCCAGTTCTGAACAATGCTGTGCATATTTCATATACATGTTACTT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 111111 44444444444444444444 111111 222222222222222222 88888888888888888888888888888 11111111 5555555555555555555 222222222222222222222222222222222222222222222222222 55555555555555555555555555555555555555 1111111 111111 44444444444444 111 22222 1111 55555555555555555555555 1 1111 11
lowQualScore : 1 777 4 0 5 7 55 4 000000 99999999999999999999 77 111111 888888888888888888 1 4 44444444444444444444444444444 666 33333333 55 4 66 4 11 8 0 22 0 6666666666666666666 22 1 5 111111111111111111111111111111111111111111111111111 3 88888888888888888888888888888888888888 1 6 77 9999999 2 000000 6 6 66666666666666 1 555 3 1 1 00000 0000 88888888888888888888888 2 3 7777 1 11 0 6
lowQualScore : . ... . . . . .. . ...... .................... .. ...... .................. . . ............................. ... ........ .. . .. . .. . . .. . ................... .. . . ................................................... . ...................................... . . .. ....... . ...... . . .............. . ... . . . ..... .... ....................... . . .... . .. . .
lowQualScore : 0 000 0 5 5 3 55 0 888888 55555555555555555555 00 555555 777777777777777777 0 0 88888888888888888888888888888 444 22222222 44 4 11 9 22 0 3 66 1 2222222222222222222 00 3 7 444444444444444444444444444444444444444444444444444 5 00000000000000000000000000000000000000 0 7 00 7777777 5 222222 7 7 22222222222222 0 000 2 0 4 00000 0000 22222222222222222222222 0 2 0000 0 22 8 4
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--TC-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------AC-TTTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--TC-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------T------ATATTTC---ATGTAC--------AC-TTTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TCA----AGCAC-------A-------A--TT-G-G------CCAACTTAACGATATAG-------TTTGGT-CCC-GCA-CAA------T------TTTACTCATATTTT---ATATAC--------ATATTTATTTTGTCAGATATCAAAAGCTTCG-AAAACTCGAAAGCTTGATATCCCATGACAGACCCTGCA---AC--ATAT-TT---T-TCATATG-----------TAGAGCTCCAAGACAC------C-AGTCATCTGTGTTTGATTTTTTTCACA---------T--AATTTTTCAATTTACTT-TTTTAT------AG-----TGTCTG--TGGTA-CAA--------TGT-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT---------------TATTTTTC-TCTCA--CCTATAATTT-----GAACA-G-AGCTTTT----------T-----G-ATTTCACATCTTTTGAT
gi|1 : CATATCTTTTA----ATT--AAATATTAATTTACAATGaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|10 : gcgaaacttcaataacgtgagtgctgaaaactcaagcacaattggccaacttaacgatatagtttggtcccgcacaattttactcatattttatatacatatttattttgtcagatatcaaaagcttcgaaaactcgaaagcttgatatcccatgacagaccctgcaacatatttttcatatgtagagctccaagacaccagtcatctgtgtttgatttttttcacataatttttcaatttacttttttatagtgtctgtggtacaatgtgttatcatcttcatttttcacatatgttttatttttatttttctctcacctataatttgaacagagctttttgatttcacatcttttgataaataattttcaccaattatttgaaacgattttttttatttTGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TAA----AGCAT-------A----------TC-GGATAACTCGAAACT----------G-------TATAAT-CTG-G-A------------------------ATAATTC---TCG-GC--------AC-ATTA-CTTGC--AATATCTCAAGCATAA-GAAACTTGAAAACTCAAGGTCCAGTGACAGTttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATA-GGAG---AT----------T-----TTACTGCACTTCCTTTGATTGGTATTTTCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTCACATCAGC-C-------G-------AT-TT-GAG------CAAACT----------A-------TGTAGT-CCTAA-A-CAA------TTCTGTGT------ATATTTC---ATATAC--------AC-Tattatcactgtaaatgtttgaataatct
gi|15 : acacatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AGG----AGCAC---------------A--TT-GGC------GAACTT----------GAAGTAACTATGGT-CCT-G-A------------------------ACATTTC----TGTGC--------A
gi|16 : tacaAGCATCA-GAAACTTAAAACCTAGTTGTTCAGTGACTGCCCCTTAATGTA---A----TT---A-CCATGTTAAATACCATTCAAAA-CTCGAATACAC------tattt
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCG----TGAACATTGGCAA-------A--TT-GAG------GTAACT----------G-------TATGGT-CCT-
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TTG-----GCGA-------A-------A--TC-TAG------GAAACT----------G-------TTTGGT-ATT-G-AACAA------TGCTGTAC------ATATTTC---ATATAC--------AC-A--A-CTTTG--GATATTCCGAGCATCT-AAAACTAGCACACTTCAGTTCTGGTAACATTCCCTTCA---ACATA----TT---TGTCATAAAAAATACCATGTAAGA-TTTGAGGACAC------C----------TG-----TGTTT---GCA---------A--A------CA-TTTACACATTTTGT--CTG-AAAATACTG-CTG--TGT-A-TAATC------TGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTG---AAGGTATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATG-AG---CTGGACTTTTTCT-----A-ATCACATTTCTTTTGATTGGCATGTCTTTTAATTGAATAAAAATATTGATTTACAG
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TTG----AAC-C-------A-------A--T--GAA------GAAACT----------A-------TGTGGT-CC------CAA----------------------ATTTC---ATGTAT--------AC-TTTA-CTTGC--AATAGCTAGAGTATTATGAAACTTGAAAACTTGAGGTACGGTGACAATCCCTTCA---A---G----TTATAT-CCATATAAATTACTATTTTAGG-CTCGGAAACAC------CTA--C--TT-TGGCTGATGTT----ACA---------TGTA--CTTTCATTTTACCCACTTTGT--CTG-AG-----TG-TAG--TG--A-TGA--------TTT-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTTGGATAAGA-A----CTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--G-AG---GT----------T-----G-ATTGCACTTCTTTTGATTGGTATAT-TCTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : AATCGTATAATTT-----AAACA-A-AA---TT----------TCTTTTG-ATTGCACCGTTTTTTATCAGCATAT-GTTTA----ACT--AAATATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaGTGGTGAC---ACTT-TGATAACTTGAGCA--AAAAA--A-TC----------------------------TC-GAG------GAAACT-------------------ATGGTACCA-A-A-CAAATTTGCT------C------ATATTTTGTTATGTACTAGTATATAC-TTTA-CTTTC--AATA------GCATCA-GAAACTAAAAAACTGAAAGTATGGTGACCGTCCTTTTG---A---AATATTT---T-TCATAATAAATACTATTTTAAA-CTCAAGGACAC------C-AT-TA-C--TGTGTG-TGTTT---GCAAAATTTAACT--A--CTTTCATTTCACCTATTTTGTTGCTGCAT-----TG-CAAGTTG--A-CAATGTCATGTTCT-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t------ACATTTC---ATATGC--------AT-TTTT-CTTGT--GAAAACTCGAGTATCA-GAAACTT
gi|6 : gaaactattcagcgcATTTTAGA-CTCGAGGAAACATTTTAC-A--CA-TT-ATTCTGATG--------G---------T--A--CTTTCATCTTACCCACTTCAT--CT---G-----TG-CA---TA--AGTAG--------GGTGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTA---AGGATA----agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactcttta---ATGTAC--------AA-TTTA-CTCGC--AATAACTCAACCAACA-AAATCTTGAAAACTCAAGTTACAGTGACAGTACCTTCA---A----------------CATAGAAAATACTATGTTAGA-CT---AGACAT------C-A--------------ATGTT-----------------------TTTCGTTTGACCCATTTAGT------AA-----TT-AAT--TG--G-TAA--------TTA-GTTG-GTACATT------G-----CA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TTG----AGCAC-------ATTGGCTGA--TTTGAG------GAAACT----------G-------TTTGGC-CCT-G-AACAA------T------CCTGTGCATATTTC---ATATTC--------AC-ATTA-CTTGC--ACTATATCAAGCAACATAAAACCAGAAAACTCAAGATCCAGTGAC
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TCA----AGCAT-------GTCTGTT-AGCTC-AAG------GAAAGT----------G-------TATGAT-CTT-G-A-CAA------G------TCTATGCATGTTTC---ATGTAC--------AC-ATTA-TTTTT--GATATCATGTGCATTA-GAAACTTGAAAACACATGGTCTGGTAACAGTTCctagcaacatattgttcat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|14 ): AAATTCTTATAACAAGTGCACGGAAATTTGATAACTTGAGCAAATACGCTAACTCCAGTTCTGAACAATGCTGTGCATATTTCATATACATGTTACTT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 5555555555555555555 222222222222222222222222222222222222222222222222222 55555555555555555555555555555555555555 1111111 111111 44444444444444 111 22222 1111 55555555555555555555555 1 1111 11
lowQualScore : 1 777 4 0 5 7 55 3 888888 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555 22222222 777 4 66 4 11 8 0 22 0 6666666666666666666 22 1 5 111111111111111111111111111111111111111111111111111 3 88888888888888888888888888888888888888 1 6 77 9999999 2 000000 6 6 66666666666666 1 555 3 1 1 00000 0000 88888888888888888888888 2 3 7777 1 11 0 6
lowQualScore : . ... . . . . .. . ...... ............................................................................................... ... ........ ... . .. . .. . . .. . ................... .. . . ................................................... . ...................................... . . .. ....... . ...... . . .............. . ... . . . ..... .... ....................... . . .... . .. . .
lowQualScore : 0 000 0 5 5 3 00 6 555555 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 11111111 333 0 11 9 22 0 3 66 1 2222222222222222222 00 3 7 444444444444444444444444444444444444444444444444444 5 00000000000000000000000000000000000000 0 7 00 7777777 5 222222 7 7 22222222222222 0 000 2 0 4 00000 0000 22222222222222222222222 0 2 0000 0 22 8 4
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------AC-TTTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------AC-TTTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TCA----AGCAC-------A-------A--T-T-G-G------CCAACTTAACGATATAG-------TTTGGT-CCC-GCA-CAATTTTACT------C------ATATTTT---ATATAC--------ATATTTATTTTGTCAGATATCAAAAGCTTCG-AAAACTCGAAAGCTTGATATCCCATGACAGACCCTGCA---AC--ATAT-TT---T-TCATATG-----------TAGAGCTCCAAGACAC------C-AGTCATCTGTGTTTGATTTTTTTCACA---------T--AATTTTTCAATTTACTT-TTTTAT------AG-----TGTCTG--TGGTA-CAA--------TGT-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT---------------TATTTTTC-TCTCA--CCTATAATTT-----GAACA-G-AGCTTTT----------T-----G-ATTTCACATCTTTTGAT
gi|1 : CATATCTTTTA----ATT--AAATATTAATTTACAATGaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|10 : gcgaaacttcaataacgtgagtgctgaaaactcaagcacaattggccaacttaacgatatagtttggtcccgcacaattttactcatattttatatacatatttattttgtcagatatcaaaagcttcgaaaactcgaaagcttgatatcccatgacagaccctgcaacatatttttcatatgtagagctccaagacaccagtcatctgtgtttgatttttttcacataatttttcaatttacttttttatagtgtctgtggtacaatgtgttatcatcttcatttttcacatatgttttatttttatttttctctcacctataatttgaacagagctttttgatttcacatcttttgataaataattttcaccaattatttgaaacgattttttttatttTGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TAA----AGCAT-------A----------T-C-GGATAACTCGAAACT----------G-------TATAAT-C-T-G-G--AA------T------A------AT-TCTC---G-GCAC--------A---TTA-CTTGC--AATATCTCAAGCATAA-GAAACTTGAAAACTCAAGGTCCAGTGACAGTttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATA-GGAG---AT----------T-----TTACTGCACTTCCTTTGATTGGTATTTTCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTCACATCAGC-C-------G-------AT-T-T-GAG------CAAACT----------A-------TGTAGT-CCTAA-A-CAA------TTCTGTGT------ATATTTC---ATATAC--------AC-Tattatcactgtaaatgtttgaataatct
gi|14 : acacatAA--C-TTG----AGCA--------A-------A--TAC-GCT--------AACT-------------------CCAGT-TCT-G-AACAA------TGCTGTGC------ATATTTC---ATATAC--------AT-GTTA-CTT
gi|15 : aaattcttataacaagtgcacggaaatttgatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AGG----AGCAC---------------A--T-T-GGC------GAACTT----------GAAGTAACTATGGT-CCT-G-A------------------------ACATTTC----TGTGC--------A
gi|16 : tacaAGCATCA-GAAACTTAAAACCTAGTTGTTCAGTGACTGCCCCTTAATGTA---A----TT---A-CCATGTTAAATACCATTCAAAA-CTCGAATACAC------tattt
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCG----TGAACATTGGCAA-------A--T-T-GAG------GTAACT----------G-------TATGGT-CCT-
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TTG-----GCGA-------A-------A--T-C-TAG------GAAACT----------G-------TTTGGT-ATT-G-AACAA------TGCTGTAC------ATATTTC---ATATAC--------AC-A--A-CTTTG--GATATTCCGAGCATCT-AAAACTAGCACACTTCAGTTCTGGTAACATTCCCTTCA---ACATA----TT---TGTCATAAAAAATACCATGTAAGA-TTTGAGGACAC------C----------TG-----TGTTT---GCA---------A--A------CA-TTTACACATTTTGT--CTG-AAAATACTG-CTG--TGT-A-TAATC------TGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTG---AAGGTATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATG-AG---CTGGACTTTTTCT-----A-ATCACATTTCTTTTGATTGGCATGTCTTTTAATTGAATAAAAATATTGATTTACAG
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TTG----AAC-C-------A-------A--T---GAA------GAAACT----------A-------TGTGGT-CC------CAA----------------------ATTTC---ATGTAT--------AC-TTTA-CTTGC--AATAGCTAGAGTATTATGAAACTTGAAAACTTGAGGTACGGTGACAATCCCTTCA---A---G----TTATAT-CCATATAAATTACTATTTTAGG-CTCGGAAACAC------CTA--C--TT-TGGCTGATGTT----ACA---------TGTA--CTTTCATTTTACCCACTTTGT--CTG-AG-----TG-TAG--TG--A-TGA--------TTT-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTTGGATAAGA-A----CTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--G-AG---GT----------T-----G-ATTGCACTTCTTTTGATTGGTATAT-TCTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : AATCGTATAATTT-----AAACA-A-AA---TT----------TCTTTTG-ATTGCACCGTTTTTTATCAGCATAT-GTTTA----ACT--AAATATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaGTGGTGAC---ACTT-TGATAACTTGAGCA--AAAAA--A-TC----------------------------T-C-GAG------GAAACT-------------------ATGGTACCA-A-A-CAAATTTGCT------C------ATATTTTGTTATGTACTAGTATATAC-TTTA-CTTTC--AATA------GCATCA-GAAACTAAAAAACTGAAAGTATGGTGACCGTCCTTTTG---A---AATATTT---T-TCATAATAAATACTATTTTAAA-CTCAAGGACAC------C-AT-TA-C--TGTGTG-TGTTT---GCAAAATTTAACT--A--CTTTCATTTCACCTATTTTGTTGCTGCAT-----TG-CAAGTTG--A-CAATGTCATGTTCT-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t------C------ACATTTC---ATATGC--------AT-TTTT-CTTGT--GAAAACTCGAGTATCA-GAAACTT
gi|6 : gaaactattcagcgATTTTAGA-CTCGAGGAAACATTTTAC-A--CA-TT-ATTCTGATG--------G---------T--A--CTTTCATCTTACCCACTTCAT--CT---G-----TG-CA---TA--AGTAG--------GGTGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTA---AGGATA----agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactcttta---ATGTAC--------AA-TTTA-CTCGC--AATAACTCAACCAACA-AAATCTTGAAAACTCAAGTTACAGTGACAGTACCTTCA---A----------------CATAGAAAATACTATGTTAGA-CT---AGACAT------C-A--------------ATGTT-----------------------TTTCGTTTGACCCATTTAGT------AA-----TT-AAT--TG--G-TAA--------TTA-GTTG-GTACATT------G-----CA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TTG----AGCAC-------ATTGGCTGA--T-TTGAG------GAAACT----------G-------TTTGGC-CCT-G-AACAA------T------CCTGTGCATATTTC---ATATTC--------AC-ATTA-CTTGC--ACTATATCAAGCAACATAAAACCAGAAAACTCAAGATCCAGTGAC
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TCA----AGCAT-------GTCTGTT-AGCT-C-AAG------GAAAGT----------G-------TATGAT-CTT-G-A-CAAGTCTA-TG-----C------ATGTTTC---ATGTAC--------AC-ATTA-TTTTT--GATATCATGTGCATTA-GAAACTTGAAAACACATGGTCTGGTAACAGTTCctagcaacatattgttcat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 5555555555555555555 222222222222222222222222222222222222222222222222222 55555555555555555555555555555555555555 1111111 111111 44444444444444 111 22222 1111 55555555555555555555555 1 1111 11
lowQualScore : 1 777 4 0 5 7 55 3 888888 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555 22222222 777 4 66 4 11 8 0 22 0 6666666666666666666 22 1 5 111111111111111111111111111111111111111111111111111 3 88888888888888888888888888888888888888 1 6 77 9999999 2 000000 6 6 66666666666666 1 555 3 1 1 00000 0000 88888888888888888888888 2 3 7777 1 11 0 6
lowQualScore : . ... . . . . .. . ...... ............................................................................................... ... ........ ... . .. . .. . . .. . ................... .. . . ................................................... . ...................................... . . .. ....... . ...... . . .............. . ... . . . ..... .... ....................... . . .... . .. . .
lowQualScore : 0 000 0 5 5 3 00 6 555555 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 11111111 333 0 11 9 22 0 3 66 1 2222222222222222222 00 3 7 444444444444444444444444444444444444444444444444444 5 00000000000000000000000000000000000000 0 7 00 7777777 5 222222 7 7 22222222222222 0 000 2 0 4 00000 0000 22222222222222222222222 0 2 0000 0 22 8 4
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------AC-TTTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------AC-TTTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TCA----AGCAC-------A-------A--T-T-G-G------CCAACTTAACGATATAG-------TTTGGT-CCC-GCA-CAATTTTACT------C------ATATTTT---ATATAC--------ATATTTATTTTGTCAGATATCAAAAGCTTCG-AAAACTCGAAAGCTTGATATCCCATGACAGACCCTGCA---AC--ATAT-TT---T-TCATATG-----------TAGAGCTCCAAGACAC------C-AGTCATCTGTGTTTGATTTTTTTCACA---------T--AATTTTTCAATTTACTT-TTTTAT------AG-----TGTCTG--TGGTA-CAA--------TGT-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT---------------TATTTTTC-TCTCA--CCTATAATTT-----GAACA-G-AGCTTTT----------T-----G-ATTTCACATCTTTTGAT
gi|1 : CATATCTTTTA----ATT--AAATATTAATTTACAATGaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|10 : gcgaaacttcaataacgtgagtgctgaaaactcaagcacaattggccaacttaacgatatagtttggtcccgcacaattttactcatattttatatacatatttattttgtcagatatcaaaagcttcgaaaactcgaaagcttgatatcccatgacagaccctgcaacatatttttcatatgtagagctccaagacaccagtcatctgtgtttgatttttttcacataatttttcaatttacttttttatagtgtctgtggtacaatgtgttatcatcttcatttttcacatatgttttatttttatttttctctcacctataatttgaacagagctttttgatttcacatcttttgataaataattttcaccaattatttgaaacgattttttttatttTGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TAA----AGCAT-------A----------T-C-GGATAACTCGAAACT----------G-------TATAAT-C-T-G-G--AA------T------A------AT-TCTC---G-GCAC--------A---TTA-CTTGC--AATATCTCAAGCATAA-GAAACTTGAAAACTCAAGGTCCAGTGACAGTttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATA-GGAG---AT----------T-----TTACTGCACTTCCTTTGATTGGTATTTTCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTCACATCAGC-C-------G-------AT-T-T-GAG------CAAACT----------A-------TGTAGT-CCTAA-A-CAA------TTCTGTGT------ATATTTC---ATATAC--------AC-Tattatcactgtaaatgtttgaataatct
gi|14 : acacatAA--C-TTG----AGCA--------A-------A--TAC-GCT--------AACT-------------------CCAGT-TCT-G-AACAA------TGCTGTGC------ATATTTC---ATATAC--------AT-GTTA-CTT
gi|15 : aaattcttataacaagtgcacggaaatttgatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AGG----AGCAC---------------A--T-T-GGC------GAACTT----------GAAGTAACTATGGT-CCT-G-A------------------------ACATTTC----TGTGC--------A
gi|16 : tacaAGCATCA-GAAACTTAAAACCTAGTTGTTCAGTGACTGCCCCTTAATGTA---A----TT---A-CCATGTTAAATACCATTCAAAA-CTCGAATACAC------tattt
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCG----TGAACATTGGCAA-------A--T-T-GAG------GTAACT----------G-------TATGGT-CCT-
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TTG-----GCGA-------A-------A--T-C-TAG------GAAACT----------G-------TTTGGT-ATT-G-AACAA------TGCTGTAC------ATATTTC---ATATAC--------AC-A--A-CTTTG--GATATTCCGAGCATCT-AAAACTAGCACACTTCAGTTCTGGTAACATTCCCTTCA---ACATA----TT---TGTCATAAAAAATACCATGTAAGA-TTTGAGGACAC------C----------TG-----TGTTT---GCA---------A--A------CA-TTTACACATTTTGT--CTG-AAAATACTG-CTG--TGT-A-TAATC------TGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTG---AAGGTATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATG-AG---CTGGACTTTTTCT-----A-ATCACATTTCTTTTGATTGGCATGTCTTTTAATTGAATAAAAATATTGATTTACAG
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TTG----AAC-C-------A-------A--T---GAA------GAAACT----------A-------TGTGGT-CC------CAA----------------------ATTTC---ATGTAT--------AC-TTTA-CTTGC--AATAGCTAGAGTATTATGAAACTTGAAAACTTGAGGTACGGTGACAATCCCTTCA---A---G----TTATAT-CCATATAAATTACTATTTTAGG-CTCGGAAACAC------CTA--C--TT-TGGCTGATGTT----ACA---------TGTA--CTTTCATTTTACCCACTTTGT--CTG-AG-----TG-TAG--TG--A-TGA--------TTT-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTTGGATAAGA-A----CTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--G-AG---GT----------T-----G-ATTGCACTTCTTTTGATTGGTATAT-TCTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : AATCGTATAATTT-----AAACA-A-AA---TT----------TCTTTTG-ATTGCACCGTTTTTTATCAGCATAT-GTTTA----ACT--AAATATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaGTGGTGAC---ACTT-TGATAACTTGAGCA--AAAAA--A-TC----------------------------T-C-GAG------GAAACT-------------------ATGGTACCA-A-A-CAAATTTGCT------C------ATATTTTGTTATGTACTAGTATATAC-TTTA-CTTTC--AATA------GCATCA-GAAACTAAAAAACTGAAAGTATGGTGACCGTCCTTTTG---A---AATATTT---T-TCATAATAAATACTATTTTAAA-CTCAAGGACAC------C-AT-TA-C--TGTGTG-TGTTT---GCAAAATTTAACT--A--CTTTCATTTCACCTATTTTGTTGCTGCAT-----TG-CAAGTTG--A-CAATGTCATGTTCT-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t------C------ACATTTC---ATATGC--------AT-TTTT-CTTGT--GAAAACTCGAGTATCA-GAAACTT
gi|6 : gaaactattcagcgATTTTAGA-CTCGAGGAAACATTTTAC-A--CA-TT-ATTCTGATG--------G---------T--A--CTTTCATCTTACCCACTTCAT--CT---G-----TG-CA---TA--AGTAG--------GGTGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTA---AGGATA----agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactcttta---ATGTAC--------AA-TTTA-CTCGC--AATAACTCAACCAACA-AAATCTTGAAAACTCAAGTTACAGTGACAGTACCTTCA---A----------------CATAGAAAATACTATGTTAGA-CT---AGACAT------C-A--------------ATGTT-----------------------TTTCGTTTGACCCATTTAGT------AA-----TT-AAT--TG--G-TAA--------TTA-GTTG-GTACATT------G-----CA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TTG----AGCAC-------ATTGGCTGA--T-TTGAG------GAAACT----------G-------TTTGGC-CCT-G-AACAA------T------CCTGTGCATATTTC---ATATTC--------AC-ATTA-CTTGC--ACTATATCAAGCAACATAAAACCAGAAAACTCAAGATCCAGTGAC
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TCA----AGCAT-------GTCTGTT-AGCT-C-AAG------GAAAGT----------G-------TATGAT-CTT-G-A-CAAGTCTA-TG-----C------ATGTTTC---ATGTAC--------AC-ATTA-TTTTT--GATATCATGTGCATTA-GAAACTTGAAAACACATGGTCTGGTAACAGTTCctagcaacatattgttcat
blockSeqs : G TAT T T A AA T CACATC ACATTGGCTGATTTGAGGAAACTGTTTGGCCCTGAACAATCCTGTGC GTT TAGTATAT CT . . T TC T CA ACATATTTG TT T . CATTACTGTGTGTGTTTGCAAAATTTAACTAC T TGCTGCATTGCAAGTTGACAATGTCATGT G G TA AGAAGGT C TCAT C T GAAGGTATACC G GTT A A C TGCAG AGG CTGGACTTTTTCTA T T ATTG T AA A
blockSeqs : . . C T . . AA ATGTCTGTTAGCTCAAGGAAAGTGTATGATCTTGACAAGTCTATGC . . TG . . T CC T AG AAATATTTT AA G . CTACTTTGGCTGATGTTACATGTAC T CTGAAAATACTGCTGTGTATAATC T . A TT C TCTC . . GGATAAGAA A AT A A G . ATG TTTCTTTTG T C . A AA G
blockSeqs : . . G T . . TG CGATTTGAGCAAACTATGTAGTCCTAAACAATTCTGTGT . . CA . . G TA . TC TGTAATTA TA T . ATTTTACACATTATTCTGATGGTAC T CTGAGTGTAGTGATGA C . A GT C CC . . AAGGATA A C C . AA ATTTT C . . A AA G
blockSeqs : . . C G . . GG GAAATCTAGGAAACTGTTTGGTATTGAACAATGCTGTAC . . CT . . A TC . TG AGTTATAT AT T . CTGTGTTTGCAAA T CTGTGCATAAGTAG G . G AA A TA . . G T . G GTTG . . C . .
blockSeqs : . . T C . . CG ATATCGGATAACTCGAAACTGTATAATCTGGAATA . . CT . . A TC . GA A GA T . CAATGTT . AATTAATTGGTAA T . G G . TC . .
blockSeqs : . . T C . . TG AAATACGCTAACTCCAGTTCTGAACAATGCTGTGC . . TT . . T TC . CA G .
blockSeqs : . . G C . . TG ACATTGGCGAACTTGAAGTAACTATGGTCCTGA . . AT . . T AT . CA
blockSeqs : . . T . . . TG TCGAGGAAACTATGGTACCAAACAAATTTGCTC . . CA . . . . . CA
blockSeqs : . . . . . . CA CAATGAAGAAACTATGTGGTCCCAA . . CA . .
blockSeqs : . . C . . .
blockSeqs : . .
blockSeqCons : CN* ** ANNTATTT*********** CTGAACGCAGTGGTAA********************** AG** NTTTTG***************** AA
originalCons : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------AC-TTTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCA---A---A----TT---T-TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGT--CTG-AG-----TG-CAG--TG--A-TAA--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-G-AG---NT----------T-----G-ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
finalCons : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------ACN-TTA-CTTGC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGACAGTCCCTTCAANNTATTT-----------TCATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTTTGTCTGAACGCAGTGGTAA----------------------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATAG--AGNTTTTG-----------------ATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111 1111111111111 222222222222222222222222222222222222222222222222222 1111 7777777777777777777777777777777 1111111 111111 44444444444444 111 22222 11 44444444444444 1 1111 11
lowQualScore : 1 777 4 0 5 7 55 3 888888 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555 22222222 1 3 66666 4 11 8 0 22 0 66 1 6666666666666 22 1 5 111111111111111111111111111111111111111111111111111 3 4444 99 2222222222222222222222222222222 1 6 77 9999999 2 000000 6 6 66666666666666 1 555 3 1 1 00000 66 88888888888888 3 2 3 7777 1 11 0 6
lowQualScore : . ... . . . . .. . ...... ............................................................................................... ... ........ . . ..... . .. . . .. . .. . ............. .. . . ................................................... . .... .. ............................... . . .. ....... . ...... . . .............. . ... . . . ..... .. .............. . . . .... . .. . .
lowQualScore : 0 000 0 5 5 3 00 6 555555 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888 11111111 0 6 66666 9 22 0 3 66 1 11 0 4444444444444 00 3 7 444444444444444444444444444444444444444444444444444 5 2222 22 3333333333333333333333333333333 0 7 00 7777777 5 222222 7 7 22222222222222 0 000 2 0 4 00000 88 66666666666666 2 0 2 0000 0 22 8 4
consensus : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------ACNTT-ACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGAC--AGTCCCTTCAACAT-A-TT-T-T-CATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTT----TGT--CTGAA-----TGCAN--TG-GTA--A--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-GAGC-------TTT---TTGATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
Reference ( family-1050 ) : GTNGTGAA---ACTT-CGATAACTCGAGCATCAAAAA--C-TCG----AGCAC-------A-------A--T-C-GAG------GAAACT----------G-------TNTGGT-CCT-G-A-CAA------T------C------ATATTTC---ATGTAC--------ACNTT-ACTT-GC--GATATCTCGAGCATCA-GAAACTTGAAAACTCGAGGTCCGGTGAC--AGTCCCTTCAANNT-A-TT-T-T-CATANNAAATACTATTTTAGA-CTCGAGGACAC------C-A--CA-CT-TGTCTGATGTTT---GCA---------T--A--CTTTCATTTTACCCATTT----TGT--CTGAA-----CGCAG--TG-GTA--A--------TNT-TTTA-ACACCTTC-----GTTTTTCACA--TC--TGTCTT-AA-TTTG---AAGATA----CTATTTGNCGTCTCAATCNTATAATCT-----AAATA-GAG--------NTT---TTGATTGCACTTCTTTTGATCGGCATATCTTTTA----ANTAAAAATATTAGTTTACAGTG
gi|1 : GCGAA---ACTT-CAATAACGTGAGTGCTGAAAA--C-TCA----AGCAC-------A-------A--T-T-G-G------CCAACTTAACGATATAG-------TTTGGT-CCC-GCA-CAA------TTTTACTC------ATATTTT---ATATAC--------ATATTTATTTTGTCAGATATCAAAAGCTTCG-AAAACTCGAAAGCTTGATATCCCATGAC--AGACCCTGCAACAT-A-TT-T-TTCATATG-----------TAGAGCTCCAAGACAC------C-AGTCATCTGTGTTTGATTTTTTTCACA---------T--AATTTTTCAATTTACTTTTTTATAGTGT--CTG--------------TG-GTACAA--------TGT-GTTA-TCATCTTC-----ATTTTTCACA--TA--TGTTTT-AT-TTT---------------TATTTTTC-TCTCA--CCTATAATTT-----GAACA-GAGC-------TTT---TTGATTTCACATCTTTTGAT
gi|1 : CATATCTTTTA----ATT--AAATATTAATTTACAATGaaataattttcaccaattatttgaaacgattttttttatttcatatcttttaattaaatattaatttacaatgttcatcactgtacatttttgattcat
gi|10 : gcgaaacttcaataacgtgagtgctgaaaactcaagcacaattggccaacttaacgatatagtttggtcccgcacaattttactcatattttatatacatatttattttgtcagatatcaaaagcttcgaaaactcgaaagcttgatatcccatgacagaccctgcaacatatttttcatatgtagagctccaagacaccagtcatctgtgtttgatttttttcacataatttttcaatttacttttttatagtgtctgtggtacaatgtgttatcatcttcatttttcacatatgttttatttttatttttctctcacctataatttgaacagagctttttgatttcacatcttttgataaataattttcaccaattatttgaaacgattttttttatttTGAA---ACTT-TGATAACTTGAGCATAAAAAAAAC-TAA----AGCAT-------A----------T-C-GGATAACTCGAAACT----------G-------TATAAT-CTG-G-A------------------------ATAATTC---TCG-GC--------ACATT-ACTT-GC--AATATCTCAAGCATAA-GAAACTTGAAAACTCAAGGTCCAGTGAC--AGTttcatcactgtacatttttgattcat
gi|12 : TCATATAATCT-----AAATAGGAG--------ATT---TT-ACTGCACTTCCTTTGATTGGTATTTTCTCTA----ATTAAAAACATTA-TTTACAATGtgcatg
gi|13 : tatgcTGAA---ACTT-TGATGACTCAAACATTAAAAA--CTTCACATCAGC-C-------G-------AT-T-T-GAG------CAAACT----------A-------TGTAGT-CCTAA-A-CAA------TTCTGTGT------ATATTTC---ATATAC--------ACattatcactgtaaatgtttgaataatct
gi|14 : acacatAA--C-TTG----AGCA--------A-------A--TAC-GCT--------AACT-------------------CCAGT-TCT-G-AACAA------TGCTGTGC------ATATTTC---ATATAC--------ATGTT-ACTT-t
gi|15 : aaattcttataacaagtgcacggaaatttgatGTGAA---ATTTTCAATAAT--GAGCATTCAAAA--C-AGG----AGCAC---------------A--T-T-GGC------GAACTT----------GAAGTAACTATGGT-CCT-G-A------------------------ACATTTC----TGTGC--------ATATT-
gi|16 : tacaAGCATCA-GAAACTTAAAACCTAGTTGTTCAGTGAC--TGCCCCTT-AATGTAA-TT-A-C-CATGTTAAATACCATTCAAAA-CTCGAATACAC------t
gi|18 : GTGAATATACTG-CGATAACTGGAGCATGAATAA--C-TCG----TGAACATTGGCAA-------A--T-T-GAG------GTAACT----------G-------TATGGT-CCT-
gi|2 : caatacaGTGAA---ATTT-TTATAACTCAAGTAT--AAAA--C-TTG-----GCGA-------A-------A--T-C-TAG------GAAACT----------G-------TTTGGT-ATT-G-AACAA------TGCTGTAC------ATATTTC---ATATAC--------ACA---ACTT-TG--GATATTCCGAGCATCT-AAAACTAGCACACTTCAGTTCTGGTAAC--ATTCCCTTCAACAT-A-TT-TGT-CATAAAAAATACCATGTAAGA-TTTGAGGACAC------C----------TG-----TGTTT---GCA---------A--A------CA-TTTACACATTT----TGT--CTGAAAATACTGCTG--TGTATA--ATC------TGT-TTTATACACCTCC-----TTTTGTCACA--TCATTGTCTT-ACTTTTG---AAGGTATACCCTACTTGGAGTTCCCATCATATACTGG-----AAATATGAGCTGGACTTTTT---CTAATCACATTTCTTTTGATTGGCATGTCTTTTAATTGAATAAAAATATTGATTTACAG
gi|3 : caGTTGTGAA---ATTG-CAATAACTTGAGCATCGAAAA--C-TTG----AAC-C-------A-------A--T---GAA------GAAACT----------A-------TGTGGT-CC------CAA----------------------ATTTC---ATGTAT--------ACTTT-ACTT-GC--AATAGCTAGAGTATTATGAAACTTGAAAACTTGAGGTACGGTGAC--AATCCCTTCAAGTT-A-TA-T-C-CATATAAATTACTATTTTAGG-CTCGGAAACAC------CTA--C--TT-TGGCTGATGTT----ACA---------TGTA--CTTTCATTTTACCCACTT----TGT--CTGAG-----TGTAG--TG-ATG--A--------TTT-TTTA-ACACCTTC-----GTTTTACACA--CC--TGTCTT-AA-TTTGGATAAGA-A----CTATTGGACAT-TTAATCCTATAATCTTGCAGGAAT--GAG--------G-----TTGATTGCACTTCTTTTGATTGGTATAT-TCTTA----AATAAAA--ATTAGTTCACAGTGctttcatcactgtaaatgtttaaattatttcaattccactgtcaaagactcac
gi|4 : AATCGTATAATTT-----AAACA-AAA--------TTTCTTTTGATTGCACCGTTTTTTATCAGCATAT-GTTTA----ACT--AAATATTAGTTTACA
gi|5 : agctagcagcttcgtgcttgcggctcaacattaaggtccatgaacatttacttgttgaaagatactgtattagaagaaggacagctcagtttgaaaattaccacacattttacctgatgattctttcgtttacctaccgtatcatctacacactgctttgtgttttgcacatgtccggaGTGGTGAC---ACTT-TGATAACTTGAGCA--AAAAA--A-TC----------------------------T-C-GAG------GAAACT-------------------ATGGTACCA-A-A-CAAATTTGCT------C------ATATTTTGTTATGTACTAGTATATACTTT-ACTT-TC--AATA------GCATCA-GAAACTAAAAAACTGAAAGTATGGTGAC--CGTCCTTTTGAAAT-ATTT-T-T-CATAATAAATACTATTTTAAA-CTCAAGGACAC------C-AT-TA-C--TGTGTG-TGTTT---GCAAAATTTAACT--A--CTTTCATTTCACCTATTT----TGTTGCTGCAT----TGCAAGTTG-ACA--ATGTCATGTTCT-TTTA-ACACCTCC-----AATTTTCACATCTC--TGTCTA-AA-TTTccattcatacattagtgtaaatgtttgaattattacaattgaaatgtcccagattatcactgatgaaacttttacagagtgttttattttaccgtgcgcaggcgtttgatgatttac
gi|6 : t------C------ACATTTC---ATATGC--------ATTTT-TCTT-GT--GAAAACTCGAGTATCA-GAAACTT
gi|6 : gaaactattcagcgATTTTAGA-CTCGAGGAAACATTTTAC-A--CA-TT-ATTCTGATG--------G---------T--A--CTTTCATCTTACCCACTT----CAT--CTG-------TGCAT--AA-GTA--G--------GGTGTTGA-GAACCTTCAGAAGGTGTTTCAAA--TA--TGTTTTCAA-TTTA---AGGATA----agctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactctttaattttagactcgaggaaacattttacacattattctgatggtactttcatcttacccacttcatctgtgcataagtagggtgttgagaaccttcagaaggtgtttcaaatatgttttcaatttaaggataaataatgaagaaattta
gi|7 : gaaactattcagcgcacatttcatatgcatttttcttgtgaaaactcgagtatcagaaacttagctaacacgtcgccaataaaacaaaatttcagacagtcaaaagaaccatatactttccaaaatgaaaaatttaaatcagtcaactcttta---ATGTAC--------AATTT-ACTC-GC--AATAACTCAACCAACA-AAATCTTGAAAACTCAAGTTACAGTGAC--AGTACCTTCAA-------------CATAGAAAATACTATGTTAGA-CT---AGACAT------C-A--------------ATGTT-----------------------TTTCGTTTGACCCATTT----AGT-----AA-----TTAAT--TG-GTA--A--------TTA-GTTG-GTACATT------G-----CA-A--TC--TGTTTT-AA-TTTaataatgaagaaattta
gi|8 : AA---ACTC-CAATAGCTGGTGCTTCAAAAA--C-TTG----AGCAC-------ATTGGCTGA--T-TTGAG------GAAACT----------G-------TTTGGC-CCT-G-AACAA------T------CCTGTGCATATTTC---ATATTC--------ACATT-ACTT-GC--ACTATATCAAGCAACATAAAACCAGAAAACTCAAGATCCAGTGACCTAG------CAACAT-A-TTGT-T-CAT
gi|9 : gcaGTGAA---ACTT-AAATAACTTGAACATCAAATA--A-TCA----AGCAT-------GTCTGTT-AGCT-C-AAG------GAAAGT----------G-------TATGAT-CTT-G-A-CAAGTCTA-TG-----C------ATGTTTC---ATGTAC--------ACATT-ATTT-TT--GATATCATGTGCATTA-GAAACTTGAAAACACATGGTCTGGTAAC--AGTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTATATTAAACTTCCTATAATATGAAGAAGATTTCTTTTGATTGCCCTTTTTTTTAATCAGCTTCATTTATTAAATAATAAGTTGTTTAAGGTGGTGTTATTGTGATGTTCAAATTATTACAATTGTCACATTGTCCCAGAT
Unaligned ( gi|17 ): AGACTGTTTAAAGAACCATATACTCCCAAAAATGACATTTTTCAATACAGTTTAGTAACTTCATTCTCGAAAGATTCAGT
Unaligned ( gi|19 ): AGAATATTCCTACAATCCATATAACCTCGGGTATACATTTTCCATGGTTTGA
Unaligned ( gi|20 ): AGACATATTAAAAGAACCTGTAAATCCATTCTGTCAACATTTATAATTATCT