lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 22222222 11 222 4444444444444444444444444444444444444444444444444444 11111 11 55555555555555555555555555555555555555 2222222222 1 11 3333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33333 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33 55555555
lowQualScore : 7 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 2 5555 66666666 99 2 6 000 2 5 9999999999999999999999999999999999999999999999999999 3 0 4 99999 1 9 44 88888888888888888888888888888888888888 8 8 9999999999 3 66 9999999 3 6 3 4 888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 77 3 33333 9 1 6 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 11 77 7 6 99999999 8
lowQualScore : . ........................................................................................................................................................................................................................................ . . .... ........ .. . . ... . . .................................................... . . . ..... . . .. ...................................... . . .......... . .. ....... . . . . ... .................................................................................................................................................................................................................................................................................................................................................... .. . ..... . . . . ......................................................................................................................................... . .. .. . . ........ .
lowQualScore : 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 8888 88888888 00 2 0 000 1 7 6666666666666666666666666666666666666666666666666666 3 7 0 11111 7 8 55 77777777777777777777777777777777777777 0 0 6666666666 2 55 7777777 5 0 5 0 888 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77 7 33333 0 8 0 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 44 99 0 7 44444444 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTNAAAAATCCTCAAATCATC-A-CTANAACACAAAACGA--ATACGCACAA----ACC------TACACC-------GAT-CCTTT-CGGCAAAGCNTCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACGTT--TATTATTCCGA-AAA---TGCAAAGGGCCGTAACT--GTCAGTNAAAAATCNNCNAACCGGAACACAAAA--GAGATATGCACAACTAGACCTCACACNGAT-CCTTCC---AANCAAGTTTC-GGCTAAATCTG-ACAACA--GATGT---CTG-GG---AGTTCTCCAG----ACAAGATTTTTTAAT-T---CC-GAAAACGC-AAN--GGNCGTAACTCGGTA-A-AAA-TC-CCC--AA--CCGNAACAC-AAAA---A--NATATGCACAACTAGACCTCACAC---TG----ATCC--C-T-CAGCAAGTTTCGGC-T------AA-C--------A----------GA-------TGT---N---GAAGGAGTTATCCGGACA--AGATTTTTAATTCC--AATATGCAA-GG-CCGCAATTCAGTCAAAAATCCTCGAAC-TGGA---CAAAA--NG---GATAT--GCACAACTAG---ACCTCACATTGATCCTTCCCAGCAAGTTTTGGCTAAATCTGACNACAGATGTC--G----GAGTT-------ATCCGG---A-ATTTTTAATTCATATGACCGCAATTGCAATGGGTCGG------TCGAA-AATCATCAA-CTG-AATACGAAACGNATAC--GCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCGGCTAAATC------CGACCGC------------A----------GATGTA-GG--AGGAGTTATCC-G-----------C---GACAAGATTTT-----------------A--------G--G-----A--G-A---AGCACAAA-AACAATATG--TCTCCCAGA-GA--T-AG--G-AGACATAA
Reference ( gi|1 ) : TTAGGACTGGTGATAGGGCTGCAAGAAAAACTTCAATAGCACTGAAAAGCAAAGTGGATACACAAGTTTGATCAAAACACGATCATTGGCTGTGGAGAAGTATGGGCACGATTTTTATATTTGAAATTTCAAAAAAAAAAAAAGTTTTAGTGAATTCCAA-CTGATGGTTCAAGAGAAGCAACATAGTCAAGATTCTTCAAATCACTGAACTAGAATGCAAAATGG--ATATGCACAA----A--------TATACT-------GAT-CCTCT-CAGC-A--CTTCATTGAAATGTGAGTTGATTCAAGAGATG----AAACATT------ACA--ATATTAATATTATTTAAA-AAAAAATGCAAAAAAAAAAAGCTT-GTCAGTCAAAAATCAATGAACAAGAACTTAAAA--GAAATATTCCCAACTAGACCTCACACTGAT-CCTTCC---AATCAAGTTTC-AGCTAAATTTG-GCAACA--GGTAT---C---GG---AGCTCTCCAA----ACAAGATTTTTTAAT-T---AT-GAAAACACTAAA--GGCTGTAACTTGGCC-A-AAA-TC-TCC--AA--CTGCAACAT-AAAA---A--CATATGCACAACTGGATCCCACAC---TG----TTCC--CGT-CAGCAAGTTTCAGC-T------AA----------A----------GA-------TGT---T---GGAGAAGTTTTTTGGACA--AGATTTTAAATTCC-CAATATGCAAAGGTTTGTAACTCTGTAAAAAATC-----AC-TG-----CAAAA--TG---GATGT--GCACTACAGG---AACTCACACTTATCCTTCCTGGCAAATCTTACCTAAATCTGACTACAGATGTT--A----GAGTT-------CACCAG---ACATTTTTAAT--AT----TTTCAAT-GCAAATGGTCA-------TAGAA-AGTAATCAAGCTGGAATGAAAAATGGATAC--GTACAATTAGACCTTACACTAATCCTTCCCAGCAAGTTTCAG-TAAATC------CAGCCTT------------A----------GATGTC-GG--AGGAGT--TCT-G-----------T---G----GATTTT-----------------A--------G--G-----A--G-A---AGCACAAA-AACA--ATG--TCTCCAAGA-GA--C-A---G-AGACATAAT
gi|2 : AATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTAAA--------AAATCATCCAACCAAAACACAAAAGAA--ATAAGCA-AA----ACTAGGCCTTACACA-------AATACTTTT-CAGT-AAGTATCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACATT--TA--ATTCCGA-AAA---TGCAAAGGACCCAA-C----TCAGTCAAAAATCCACGAACCTGAACAAAAAA--GGGGTATGCACAACTAAACCTCATATTGAT-CTTTCC---TAACAAACTTT-AGCTTAATCTG-ACCACA--GACAT---CTG-GG---AGTTATCCGG----AAAAGA-TTTTTAAT-T-----------CAT--AT--GACTGCAATGCAGTC-A-AAA-CC-CCTTGAA--CAGTAACATGAGAG---A--TATATACTCAAGTATACCTTACAT---TG----ATCCTTC-T-CAATTAGTTTCAGC-T------AA----------ATCT-------GACCACAGTTGT---A---GGAGGAGTGGCCCGGACA--AGATTTT
gi|3 : cttcatacAGTCAAAAATCCTCAAA--------CTGGAACACAAAATGGATATATGCACAA----C--------TAGACCTCACACAGAT-CCTTT-Cgtgacagactgaggacaggtggaaatgtcttccagagatgcaggagacataa
gi|5 : ctaatacaatcttttttaattctgaaatccaaaagagaaatgcacaactaaatgtcatattgatccttcccaggtgtcagagttataaggacataagatttttaattccacaattacaatgggtcAAATCATCAATCTACAATACAAAACGA--AAACGCACAACTAGACCT-----TACACT-------GAT-CCTTTCCGGCAA--CTTcagaatattttggctaaatgcgacaacagatatagaaggagttatccggacaacacagacggatagatggaaagcacaaacacaatatgtctccctgagcggtgcagacaaat
gi|2 : cccttcatataagacttttaatttaaataaaaaatgaaaagggcaataacttcgtaatT------ACA--ATGTT----TTATTCCAA-ACA---TGCCAAGAGATGTAACT----CAGTAAAAAATCATCCAACCAAAACACAAAA--GAAATAAGCAAAACTAGGCCTTACACAAATACTTTTC---AGT-AAGTATC-AGCTAAATCTGAGC-ACA--GATGT---T---GGAAAAGTTCTTCAG----ACAGGA-CATTTAAT-T---CC-GAAAATGC-AAA--GGACCCAACTCAGTCAA-AAA-TC-CAC--GAACCTG-AACA--AAAA---AGGGGTATGCACAACTAAACCTCATAT---TGATC-TTTC--C---TAACAAACTTTAGCTT------AATCTGACCAC-A----------GA-------CATC--T---G--GGAGTTATCCGGAAA--AGATTTTTAATTC----ATATG-A-----CTGCAATGCAGTCAAAACCCCTTGAAC-AG-----TAACA--TGAGAGATAT--ATACT-CAAGTATACCTTACATTGATCCTTCTCAATTAGTTTCAGCTAAATCTGACCACAGTTGTA--G----GAGgaccttacactga
gi|5 : cttcaATTTAAATAAAAAATGAAAAGGGCAATAACTTCGT-AATAAATCATCAATCTACAATA---CAAAAC-GAAA-ACGCACAACTAGACCTTACACTGAT-CCTTTC---gagtggcccggacaagattttgtgacagactgaggacaggtggaaatgtcttccagagatgcaggagacataa
gi|3 : cccttcatataagactttta-GTCAGTCAAAAATCCTCAAACTGGAACACAAAATGGATATATGCACAACTAGACCTCACACAGAT-CCTTTCCAGAAT---ATTTT-GGCTAAATGCG-ACAACA--GATATAGAA---GG---AGTTATCCGG----ACAAcggcaacttgaccttacactga
gi|3 : ctaatacaatcttttttaattctgaaatccaaaagagaaatgcacaactaaatgtcatattgatccttcccaggtgtcagagttataaggacataagatttttaattccacaattacaatggAAAA--GAGAAATGCACAACTAAATGTCATATTGAT-CCTTCC-------------------------------CA--GGTGT---C---AG---AGTTAT--AAGGACATAAGATTTTT-AAT-T---CC-ACAATTAC-AAT--GG--GTCA---GTCA-A-AAA-TCCTCA--AA--CTGGAACAC-AAAATGGA--TATATGCACAACTAGACCTCACAC---AG----ATCC--TTTCCAGAATATTTTGGC-T------AAATGCGACAACA----------GA-------TAT---A---GAAGGAGTTATCCGGACA--Acacagacggatagatggaaagcacaaacacaatatgtctccctgagcggtgcagacaaat
gi|7 : ctaatacaatcttttttaattctgaaatccACCTGAAACAGAT-CCTTCC---AAGCAA-TTCCAAGCTTTATCTG---AACACTGATGT---CTGAGT---AGTTCTCGAG----AAAAGATTTTGTAACAA---ATGGAAAGCACAAAA--cacagacggatagatggaaagcacaaacacaatatgtctccctgagcggtgcagacaaat
gi|6 : CTCACACTGAT-CCTTCC---CAGCAAGTTTT-GGCTAAATCTG-AAGACA--GATGT---acaatatctctccaagagttgagaagacataac
gi|5 : CCCTTCAT----ATAAGACTTTT-AAT-TTAAAT-AAAAA-ATGAAAAGGGCAATAACTTCGTA-ATAAA-TC-ATC--AAT-CTACAATAC-AAAACG-A--AA-ACGCACAACTAGACCTTACAC---TG----ATCC--TTTCCGGCAACTTacatataaaagaagatatctggataagacttctgtgacagatggacggacagcacaaaacaatatgtctccctgacaataggagacata
gi|2 : CTTCAT----ACAATGTTTT---AT-T---CC-AAACATGCCAAG--AGATGTAACTCAGTA-A-AAAATCATCC--AA--CCAAAACAC-AAAAG--A--AATAAGCAAAACTAGGCCTTACACAAATA----CTTT----T-CAGTAAGTATCAGC-T------AA----------ATCTGAGCACAGA-------TGT---T---GGAAAAGTTCTTCAGACA--GGACATTTAATTCC-GAAAATGCAAAGGACC-CAACTCAGTCAAAAATCCACGAACCTGAA---CAAAAAAGG---GGTAT--GCACAACTAA---ACCTCATATTGATCTTTCCTAACAAACTTTAGCTTAATCTGACCACAGACATCTGG----GAGTT-------ATCCGGAAAAGATTTTTAATTCATATGACTGCAAT-GCA----GTCAAAACCCCTTGAACAGTAAC---------ATGAGAGATATATAC---T-CAAGTATACCTTACATTGATCCTTCTCAATTAGTTTCAGCTAAATC------TGACCAC------------A----------GTTGTA-GG--AGGAGTGGCCC-G---------------GACAAGATTTT-----------------G--------T--GAC---A--G-ACTGAGGACAGGTGGAA--ATG--TCTTCCAGA-GATGC-AG--G-AGACATAAgaccttacactga
gi|3 : -AAAG---A--GAAATGCACAACTAAATGTCATAT---TG----ATCC--TTC-C--CAGGTGTCAG--------------------------------------------------------AGTTATAAGGACATAAGATTTTTAATTCCACAAT-TACAATGG---GTCAGTC----AAAAATCCTCAAAC-TGGAACACAAAA--TG---GATATATGCACAACTAG---ACCTCACACAGATCCTTTCCAGAATATTTTGGCTAAATGCGACAACAGATA-T--AGAAGGAGTT-------ATCCGG---ACA
gi|6 : ctaatacaatcttttttaattctgaaatccaCTCACAC---TGATCCTTCC--C----AGCAAGTTTTGGC-T------AAATCTGAAGACA----------GA-------TGTACATATAAAAGAAGATATCTGGATA--AGACTTacacagacggatagatggaaagcacaaacacaatatgtctccctgagcggtgcagacaaat
gi|4 : CCAACAC---TG----AGCCT-CAC-CTGCATGCTTCAGC-TTTATCAAACCAC------A----------GA-------TGT---A---GAAGGAGTTATCCTTACA--AGATTTTctgtgacagatggacggacagcacaaaacaatatgtctccctgacaataggagacata
gi|3 : TTTTTAATTCTG----AAATC---------------CAAAA--GA---GAAAT--GCACAACTAA---ATGTCATATTGATCCTTCC--------------------------CAGGTGTC--A----GAGTTATAAGGACATAAG---A--TTTTTAAT---T----CCACAATTACAATGGGTCAG------TCAAA-AATCCTCAAACTGGAACACAAAATGGATATATGCACAACTAGACCTCACACAGATCCTTTCCAGAATATTTTGGCTAAATG------CGACAAC------------A----------GATATA-GA--AGGAGTTATCC-GGACAACACAGAC---G----GA---T-----------------A--------GATG-----G--A-A---AGCACAAA-CACAATATG--TCTCCgtgactgacagacagacaggtggacagaaagcacaaaaacaatatgtcttcctgagaatgtgagacat
gi|6 : ctaatacaatctCTCACACTGATCCTTCCCAGCAAGTTTTGGCTAAATCTGAAGACAGATGTctgagcggtgcagacaaat
gi|5 : TCG-------TAATA-AATCATCAATCTACAATACAAAACGAAAAC--GCACAACTAGACCTTACACTGATCCTTTCCGGCAACTTacatataaaagaagatatctggataagacttctgtgacagatggacggacagcacaaaacaatatgtctccctgacaataggagacata
gi|7 : cccttcatataagacttttaatttaaataaaaaatgaaaagggcaataactACCTGAAACAGATCCTTCCAAGCAA-TTCCA---------------AGCTTT------------ATCTGAACACTGATGTC-TG--AGTAGT--TCTCG-----------A---GAAAAGATTTT-----------------GTAACAAATG--G-----A----A---AGCACAAA-AACA--ATATCTCTCCAAGA-GT--TGA---GAAGACATAAgaccttacactga
gi|6 : CTCACACTGATCCTTCCCAGCAAGTTTTGGCTAAATCTGAAGACAGATGTACATATAAAAGAA----------GATATCTGGATAAGACT--TCT-G-----------T---GACA-GAT-----------------------------G--G-----ACGG-AC--AGCAC-AA-AACAATATG--TCTCCCTGACAA--T-AG--G-AGACATAc
gi|4 : ACACTGAGCCTCACCTGCATGCTTCAGCTTTATC------AAACCAC------------A----------GATGTA-GA--AGGAGTTATCC-T-----------TACAA----GATTTTGTGACTGACAGACAGACA--------G--GTGGACA--GAA---AGCACAAA-AACAATATG--TCTTCCTGA-GA----ATGTG-AGACAT
gi|8 : cca-----------------A--------G--G-----A----A---AGCACAAA-AACT--ATT--TTTCCAAGA-G
gi|18 : atattttgtggcagacaggttgacaggatgga--G-----A--A-A---AGCACAAA-AACAACATG--TCTTCCAGA-GA--G-AG--G-AGACATAtggggaaggcat
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TGACACAAGGATGGACAGACAGACAGCGTAAAAGCAATATGTCTCCCAGAAAGCAAGAGACATTATTATCA
Unaligned ( gi|10 ): ATAGGCAGACGGATGGACAGAAAGCACAAAAACACTTTGTCTCCCAGCAAGGAGATATAATTC
Unaligned ( gi|11 ): ACAGAAGGATGGACATGACAAAAAACAATATATCTCCACAGAAAGTGGGAGACACACTTTAA
Unaligned ( gi|12 ): GCAGACAGACAGACAGATAGCAAACACAAAAACAATGTCTTTCTGAGAGGGGGAAGATAT
Unaligned ( gi|13 ): ACAGACAAACAGACAGAAAGCACAAAAACAATATGTCTCTTTGAGAGAGATGAAACACA
Unaligned ( gi|14 ): ATGAACAGACAGATGGAAAGCACAAAAACAACATGTATCCCTGAGAGGGGTAGACAT
Unaligned ( gi|15 ): GACAGAAAGACGGACGGAAAGAAAGTATAAAAACAATGTTTTCCTGAATGTAGG
Unaligned ( gi|16 ): ACAGAGGAACAGAAAGCACAAACAAATATGACTCCCTGAGAGGGGCTGGGGGAC
Unaligned ( gi|17 ): ATGGACAGATGAAAAGCACACAAACAAAATGTCTCAGCGAAAGGAAGACATA
Unaligned ( gi|19 ): ACGGACAGATGGAAAGCACAAAAATATGTCTCCCTGAGAGTGGGTGACA
Unaligned ( gi|20 ): ATGTAAGTCATCCACACAAGAATTTTAGACCAACCGACTGACCAACC
Unaligned ( gi|21 ): AGATATGGGAGGAATTATCTGATCAAGATTTTGTAAAAGG
Alignments
lowQualScore : 11111111111 11111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55555 3333 22 1 6666666666 1 1 1 88888888 1 2 444 6666666 2222 1 2222222 222 222 33 11 1 11 1 111 55555555555555555 1 22 1 22 3333 88888888888 11 4 6666 1 1 11111111111 11 55555555555555555555555555555555555555555555555555555555555555555555555 1 2 555555 11 222222 111111111111111111111111111111111111111111111111111111111111111 11111 11
lowQualScore : 4 00000 3333 77 4 4 1 4 0 6666666666 1 0 0 5 33333333 0 0 6 555 1 333 2 5555555 2 3333 3 888888 2 9 6666666 888 333 0 888 66 7 1 22 1 22 3 3 0 7 1 7 1 3 6 4 3 6 88 2 2 5 555 4 11111111111111111 5 77 0 1 66 1 4 2 2 4 7777 4 6 66666666666 1 6 4 0 77 0 6 7777 6 6 7 5 77777777777 1 4 4 4 33 2 77777777777777777777777777777777777777777777777777777777777777777777777 5 66 3 2 666666 6 0 1 88 1 5 8 22 1 7 333333 0 11 333333333333333333333333333333333333333333333333333333333333333 6 2 444 2 2 66666 00
lowQualScore : . ..... .... .. . . . . . .......... . . . . ........ . . . ... . ... . ....... . .... . ...... . . ....... ... ... . ... .. . . .. . .. . . . . . . . . . . . . .. . . . ... . ................. . .. . . .. . . . . . .... . . ........... . . . . .. . . .... . . . . ........... . . . . .. . ....................................................................... . .. . . ...... . . . .. . . . .. . . ...... . .. ............................................................... . . ... . . ..... ..
lowQualScore : 0 00000 0000 55 0 0 0 0 5 5555555555 0 5 5 0 00000000 5 0 0 555 0 555 5 0000000 5 5555 0 777777 0 0 0000000 000 333 7 777 77 3 0 00 0 77 7 3 7 3 0 7 0 7 0 0 0 0 00 5 5 5 555 0 55555555555555555 0 55 5 0 00 0 0 5 5 0 5555 0 0 00000000000 0 0 7 7 33 0 0 0000 0 0 0 0 00000000000 0 0 0 0 00 5 55555555555555555555555555555555555555555555555555555555555555555555555 5 55 0 5 333333 0 7 0 33 4 2 0 88 4 8 000000 6 44 666666666666666666666666666666666666666666666666666666666666666 2 9 222 9 9 55555 44
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAA-GCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACT--TCAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTT-NAATTCCCAATATGCAAAGGTTTGTAACTCTGTAAAAAATC-----ACTG--CAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTT---CNCAATTGCAANNGGTCAGTCGAAAATCATCAANCT-G-AATACAAAACGGATAC--GCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AG-A-G-A-C-GGG--AGACATAA
Reference ( family-1017 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTNAAAAATCCTCAAATCATC--ACTANAACACAAAACGAATACGCACAAACC------TACACCGAT-CCTTTCGGCAAAGCNTCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACGTT--TA--TTATTCCGAAAA---TGCAAAGGGCCGTAACT-GTCAGTNAAAAATCNNCNAACCGGAACACAAAA-GAGATATGCACAACTAGACCTCACACNGATCCTTCCAANCAAGTTTCGGCTAAATCTGACAACAGATGTCTGGGAGTTCTCCAGACAAGATTTTTTAATTCCGAAAAC-GC-AANGGNCGTAACTCGGTAAAAATCCCC--AACCGNAACAC-AAAAANATATGCACAACTAGACCTCACACTGATCC--C-TCAGCAAGTTTCGGCTA---------ACAGATGTNGAAGGAGTTATCCGGACAAGATTTT-TAATT-CCAATATGCAAGG--CCGCAATTCAGTCAAAAATCCTCGAACTGGACAAAANGGATATGCACAACTAGACCTCACATTGATCCTTCCCAGCAAGTTTTGGCTAAATCTGACNACAGATGTCGGAGTTATCCGGA------ATTTTTAATTCATATGACCGCAATTGCAATGGGTCGGTCGAAAATCATCAA-CT-G-AATACGAAACGNATAC--GCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCGCAGATG------TAGGAGGAGTTATCCGCGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AG-A-G-A-T-AGG--AGACATAA
gi|1 : AAAGTTTTAGTGAATTCCAA-CTGATGGTTCAAGAGAAGCAACATAGTCAAGATTCTTCAAATCACTGAACTAGAATGCAAAATGGATATGCACAAA--------TATACTGAT-CCTCTCAGCA---CTTCATTGAAATGTGAGTTGATTCAAGAGATG----AAACATT------ACA--ATATTAATA--TTATTTAAAAAAAAATGCAAAAAAAAAAAGCTTGTCAGTCAAAAATCAATGAACAAGAACTTAAAA-GAAATATTCCCAACTAGACCTCACACTGATCCTTCCAATCAAGTTTCAGCTAAATTTGGCAACAGGTATC--GGAGCTCTCCAAACAAGATTTTTTAATTATGAAAAC-ACTAAAGGCTGTAACTTGGCCAAAATCTCC--AACTGCAACAT-AAAAACATATGCACAACTGGATCCCACACTGTTCC--CGTCAGCAAGTTTCAGCTA---------A-AGATGTTGGAGAAGTTTTTTGGACAAGATTTT-AAATTCCCAATATGCAAAGGTTTGTAACTCTGTAAAAAATC-----ACTG--CAAAATGGATGTGCACTACAGGAACTCACACTTATCCTTCCTGGCAAATCTTACCTAAATCTGACTACAGATGTTAGAGTTCACCAGAC-----ATTTTTAAT--ATTT----TCAA-TGCAAATGGTC-ATAGAAAGTAATCAAGCTGG-AATGAAAAATGGATAC--GTACAATTAGACCTTACACTAATCCTTCCCAGCAAGTTTCA-G-TAAATCCAGCCTTAGATG------TCGGAGGAGT--TCTGTG------------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACA--ATGTCTCC-A--AG-A-G-A-C-A-G--AGACATAA
gi|10 : ttaggactggtgatagggctgcaagaaaaacttcaatagcactgaaaagcaaagtggatacacaagtttgatcaaaacacgatcattggctgtggagaagtatgggcacgatttttatatttgaaatttcaaaaaaaaaa-A-AGCACAAAAACACTTTGTCTCC-C--AGCA-------AGG--AGATATAAt
gi|11 : ataggcagacggatggacagaAAAAACAATATATCTCCAC--AG-A-A-AGT-GGG--AGACACAttc
gi|13 : acagaaggatggacatgaca-A-AGCACAAAAACAATATGTCTCT-TTGAG-A-G-A-G-ATG--AAACACActttaa
gi|14 : acagacaaacagacagaGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAACAACATGTATCC-C--TG-A-G-A-G-GGGT-AGACAT
gi|17 : atgaaca--G-----A--A-A-AGCACACAAACAAAATGTCT---C--AG-C-G-A-A-AGGA-AGACATA
gi|18 : atggacagat--G-----A--A-A-AGCACAAAAACAACATGTCTTC-C--AG-A-G-A-G-AGG--AGACATA
gi|19 : gacagatGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAA---TATGTCTCC-C--TG-A-G-AGT-GGG--TGACA
gi|2 : acgAATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTAAAAAATCATC----CA----ACCAAAACACAAAAGAAATAAGCA-AAACTAGGCCTTACACAAATACTTTTCAGTAA-GTATCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACATT--TA----ATTCCGAAAA---TGCAAAGGACC-CAACT---CAGTCAAAAATCCACGAACCTGAACAAAAAA-GGGGTATGCACAACTAAACCTCATATTGATCTTTCCTAACAAACTTTAGCTTAATCTGACCACAGACATCTGGGAGTTATCCGGAAAAGA-TTTTTAATTCATATGACTGC-AATG---------CAGTCAAAACCCCTTGAACAGTAACATGAGAGATATATACTCAAGTATACCTTACATTGATCCTTC-TCAATTAGTTTCAGCTAAATCTGACCACAGTTGTAGGAGGAGTGGCCCGGACAAGATTTT-
gi|21 : cttcatacAGATATGGGAGGAATTATCTGATCAAGATTTTGTAAgtgacagactgaggacaggtggaaatgtcttccagagatgcaggagacataa
gi|3 : CAAAAGAGAAATGCACAACTAAATGTCATATTGATCCTTCCCA--------------------------GGTGTCAGAGTTATAAGGACATAAGATTTTTAATTC-------CACAATTACAATGGGTCAGTCAAAAATCCTCAAACT-GGAACACAAAATGGATATATGCACAACTAGACCTCACACAGATCCTTTCCAGAATATTTTG-GCTAAATGCGACAACAGATA------TAGAAGGAGTTATCCG-GACAACACAGACGGA-T--------------------A--------GATG-----G--A-A-AGCACAAACACAATATGTCTCC-C--TG-A-G-aagg
gi|4 : ctaatacaatcttttttaattctgaaatcACACTGAGCCTCACCTGCATGCTTCA-GCTTTATCAAACCACAGATG------TAGAAGGAGTTATCC-TTACAA--------GA-TTTTGTGACTGACAGACAGACA--------G--GTGGACA--GAA-AGCACAAAAACAATATGTCTTC-C--TG-A-GAA-T-GTG--AGACATcggtgcagacaaat
gi|5 : ccaCTTCATATAAGACTTT--TAATTTAAATAAAAAA---TGAAAAGGGCAATAACT--TC-GTAATAAATCATCAATCTACAATACAAAACGAAA-ACGCACAACTAGACCTTACACTGATCCTTTCCGGCAACTT
gi|5 : ccAAATCATCAATCT-ACAATACAAAACGAAAAC--GCACAACTAGACCTTACACTGATCCTTTCCGGCAACTTgaccttacactga
gi|6 : cccttcatataagacttttaatttaaataaaaaatgaaaagggcaataacttcgtaatCTCACACTGATCCTTCCCAGCAAGTTTTG-GCTAAATCTGAAGACAGATGTACATATAAAAGAAGATATCTG-GATAA--------GACTTCT-----------------GTGACAGATG--G-----ACGG-ACAGCAC-AAAACAATATGTCTCC-C--TG-ACA-A-T-AGG--AGACATAgaccttacactga
gi|7 : ACCTGAAACAGATCCTTCCAAGCAA-TTCCAAGCTTTATCTGAACACTGATG------TCTGAGTAGTTCTC-GAGAAAA--------GA-TTTT-----------------GTAACAAATG--G-----A----A-AGCACAAAAACAATATCTCTCC-A--AG-A-G-T-TGAGA--AGACATAA
gi|8 : GACAG--------GA-TGGA-----------------A--------G--G-----A----A-AGCACAAAAAC--TATTTTTCC-A--AG-A-G---T-GGGGAAGGCATc
gi|9 : atattttgtggcagacaggtt-----A--G-ACAGCGTAAAAGCAATATGTCTCC-C--AG-A-A-AGC-AAG--AGACAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GCAGACAGACAGACAGATAGCAAACACAAAAACAATGTCTTTCTGAGAGGGGGAAGATAT
Unaligned ( gi|15 ): GACAGAAAGACGGACGGAAAGAAAGTATAAAAACAATGTTTTCCTGAATGTAGG
Unaligned ( gi|16 ): ACAGAGGAACAGAAAGCACAAACAAATATGACTCCCTGAGAGGGGCTGGGGGAC
Unaligned ( gi|20 ): ATGTAAGTCATCCACACAAGAATTTTAGACCAACCGACTGACCAACC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 2222 11 333333333 1 33333333 1 11 3333333 2222 222222 1 2222222 222 222 1 11 1 1111 333333333 11 1 2222 333333333 2222 2222 88888888888888888888888888 22222 55555555 1 1 333 22 222222 000000000000000000000000000000000000000000000000000000000000000 222222
lowQualScore : 1 66666 3333 88 1 1 1 1 1 888888888 1 1 5 44444444 1 5 88 1 1 2 1 2222222 1 3333 2 888888 2 6666666 333 88 555 7 1 1 3 7 0 1 1 1 1 1 88 1 1 5 333 1 9999 1 777777777 88 1 5 1 1 1 1 3333 1 777777777 1 1 0 1 2 4444 3333 1 1 1 1 22 1 55555555555555555555555555 5555 77777 88888888 5 22 5 2 55 1 000 2 6 77 0 1 44 8 22 1 333333 0 11 666666666666666666666666666666666666666666666666666666666666666 5 55555 2 000000 2 8
lowQualScore : . ..... .... .. . . . . . ......... . . . ........ . . .. . . . . ....... . .... . ...... . ....... ... .. ... . . . . . . . . . . . .. . . . ... . .... . ......... .. . . . . . . .... . ......... . . . . . .... .... . . . . .. . .......................... .... ..... ........ . .. . . .. . ... . . .. . . .. . .. . ...... . .. ............................................................... . ..... . ...... . .
lowQualScore : 0 55555 5555 00 0 0 0 0 0 000000000 0 0 0 00000000 0 5 00 0 0 5 0 5555555 0 5555 5 777777 0 0000000 333 33 777 3 0 0 3 3 7 0 0 0 0 0 00 0 0 5 000 0 0000 0 555555555 00 0 0 0 0 0 0 5555 0 000000000 0 0 7 0 5 5555 5555 0 0 0 0 00 0 55555555555555555555555555 5555 00000 55555555 5 00 0 5 55 0 000 5 0 55 2 4 66 0 88 4 000000 6 44 555555555555555555555555555555555555555555555555555555555555555 7 55555 7 000000 7 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-A-NG-G-G-AGACATAA
Reference ( family-1017 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTNAATTCCCAATATGCAAAGGTTTGTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAATCATCAANCT-G-AATACAAAACGGATAC--GCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-A-CG-G-G-AGACATAA
gi|1 : AAAGTTTTAGTGAATTCCAA-CTGATGGTTCAAGAGAAGCAACATAGTCAAGATTCTTCAAATCACTGAACTAGAATGCAAAATGGATATGCACAAA--------TATACTGAT-CCTCTCAGCA--CTTCATTGAAATGTGAGTTGATTCAAGAGATG----AAACATT------ACA--ATATTAATA--TTATTTAAAAAAAAATGCAAAAAAAAAAAGCTTGTCAGTCAAAAATCAATGAACAAGAACTTAAAA-GAAATATTCCCAACTAGACCTCACACTGATCCTTCCAATCAAGTTTCAGCTAAATTTGGCAACAGGTATC--GGAGCTCTCCAAACAAGATTTTTTAATTATGAAAAC-ACTAAAGGCTGTAACTTGGCCAAAATCTCC--AACTGCAACATAAAA-ACATATGCACAACTGGATCCCACACTGTTCC--CGTCAGCAAGTTTCAGCTAAA----------GATGTTGGAGAAGTTTTTTGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTGTAACTCTGTAAAAAATCACTGCAAAATGGATGTGCACTACAGGAACTCACACTTATCCTTCCTGGCAAATCTTACCTAAATCTGACTACAGATGTTAGAGTTCACCAGAC-----ATTTTTAAT--ATTT-TCAA-TGCAAATGGTCA-TAGAAAGTAATCAAGCTGG-AATGAAAAATGGATAC--GTACAATTAGACCTTACACTAATCCTTCCCAGCAAGTTTCA-G-TAAATCCAGCCTTAGATG------TCGGAGGAGT--TCTGTG------------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACA--ATGTCTCC-A--AGA-G-A-C--A-G-AGACATAA
gi|10 : ttaggactggtgatagggctgcaagaaaaacttcaatagcactgaaaagcaaagtggatacacaagtttgatcaaaacacgatcattggctgtggagaagtatgggcacgatttttatatttgaaatttcaaaaaaaaaa-A-AGCACAAAAACACTTTGTCTCC-C--AGC-A-A----G-G-AGATATAAt
gi|11 : ataggcagacggatggacagaAAAAACAATATATCTCCAC--AGA-A-AGTG-G-G-AGACACAttc
gi|12 : acagaaggatggacatgaca-A-AACACAAAAACAATGTCTTTCT-G--AGA-G-G-GG-G-A-AGATATctttaa
gi|13 : gcagacagacagacagatagc-A-AGCACAAAAACAATATGTCTCT-TTGAGA-G-A-GA-T-G-AAACACA
gi|14 : acagacaaacagacagaGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAACAACATGTATCC-C--TGA-G-A-GG-G-GTAGACAT
gi|16 : atgaaca-A-AGCACAAACA-AATATGACTCC-C--TGA-G-A-GG-G-G-
gi|18 : acagaggaacaga--G-----A--A-A-AGCACAAAAACAACATGTCTTC-C--AGA-G-A-GA-G-G-AGACATActgggggac
gi|19 : gacagatGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAA---TATGTCTCC-C--TGA-G-AGTG-G-G-TGACA
gi|2 : acgAATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTAAAAAATCATC------C--AACCAAAACACAAAAGAAATAAGCA-AAACTAGGCCTTACACAAATACTTTTCAGTAAGTATCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACATT--TA----ATTCCGAAAA---TGCAAAGGACC-CAACT---CAGTCAAAAATCCACGAACCTGAACAAAAAA-GGGGTATGCACAACTAAACCTCATATTGATCTTTCCTAACAAACTTTAGCTTAATCTGACCACAGACATCTGGGAGTTATCCGGAAAAGA-TTTTTAATTCATATGACTGC-AATG---------CAGTCAAAACCCCTTGAACAGTAACATGAGAGATATATACTCAAGTATACCTTACATTGATCCTTC-TCAATTAGTTTCAGCTAAATCTGACCACAGTTGTAGGAGGAGTGGCCCGGACAAGATTTT
gi|21 : cttcatacAGATATGGGAGGAATTATCTGATCAAGATTTTgtgacagactgaggacaggtggaaatgtcttccagagatgcaggagacataa
gi|3 : TTTTTAATTCTG----AAATC----CAAAAGAGAAATGCACAACTAAATGTCATATTGATCCTTCCC--------------------------AGGTGTCAGAGTTATAAGGACATAAGATTTTTAATTC----CACAATTACAATGGGTCAGTCAAAAATCCTCAAACT-GGAACACAAAATGGATATATGCACAACTAGACCTCACACAGATCCTTTCCAGAATATTTTG-GCTAAATGCGACAACAGATA------TAGAAGGAGTTATCCG-GACAACACAGACGGA----T-----------------A--------GATG-----G--A-A-AGCACAAACACAATATGTCTCC-C--TGA-G---CG-GTGCAGACAgtaaaagg
gi|4 : ctaatacaatctACACTGAGCCTCACCTGCATGCTTCA-GCTTTATCAAACCACAGATG------TAGAAGGAGTTATCC-TTACAA--------GA-TTTTGTGACTGACAGACAGACA--------G--GTGGACA--GAA-AGCACAAAAACAATATGTCTTC-C--TGA-GAA-TG-T-G-AGACATaat
gi|5 : ccaCTTCATATAAGACTTT--TAATTTAAATAAAAAA---TGAAAAGGGCAATAACTT--C-GTAATAAATCATCAATCTACAATACAAAACGAAA-ACGCACAACTAGACCTTACACTGATCCTTTCCGGCAACTT
gi|6 : ccCTCACACTGATCCTTCCCAGCAAGTTTTG-GCTAAATCTGAAGACAGATGTACATATAAAAGAAGATATCTG-GATAA--------GACTTCT-----------------GTGACAGATG--G-----ACGG-ACAGCAC-AAAACAATATGTCTCC-C--TGACA-A-TA-G-G-AGACATAgaccttacactga
gi|7 : ACCTGAAACAGATCCTTCCAAGCAA-TTCCAAGCTTTATCTGAACACTGATG------TCTGAGTAGTTCTC-GAGAAAA--------GA-TTTT-----------------GTAACAAATG--G-----A----A-AGCACAAAAACAATATCTCTCC-A--AGA-G-T-TGAG-A-AGACATAA
gi|8 : TGACAG--------GA-TGGA-----------------A--------G--G-----A----A-AGCACAAAAAC--TATTTTTCC-A--AGA-G-T-GG-G-GAAGGCATc
gi|9 : atattttgtggcagacaggt-----A--G-ACAGCGTAAAAGCAATATGTCTCC-C--AGA-A-AGCA-A-G-AGACAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGAAAGACGGACGGAAAGAAAGTATAAAAACAATGTTTTCCTGAATGTAGG
Unaligned ( gi|17 ): ATGGACAGATGAAAAGCACACAAACAAAATGTCTCAGCGAAAGGAAGACATA
Unaligned ( gi|20 ): ATGTAAGTCATCCACACAAGAATTTTAGACCAACCGACTGACCAACC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 2222 11 333333333 1 33333333 1 11 3333333 2222 222222 1 2222222 222 222 1 11 1 1111 333333333 11 1 2222 333333333 2222 2222 88888888888888888888888888 22222 55555555 1 1 222 11 222222 000000000000000000000000000000000000000000000000000000000000000 111111
lowQualScore : 1 66666 3333 88 1 1 1 1 1 888888888 1 1 5 44444444 1 5 88 1 1 2 1 2222222 1 3333 2 888888 2 6666666 333 88 555 7 1 1 3 7 0 1 1 1 1 1 88 1 1 5 333 1 9999 1 777777777 88 1 5 1 1 1 1 3333 1 777777777 1 1 0 1 4444 3333 1 1 1 1 22 1 55555555555555555555555555 5555 77777 88888888 5 22 5 2 22 000 1 88 0 1 44 8 22 1 333333 0 11 333333333333333333333333333333333333333333333333333333333333333 5 2 444 2 666666 5
lowQualScore : . ..... .... .. . . . . . ......... . . . ........ . . .. . . . . ....... . .... . ...... . ....... ... .. ... . . . . . . . . . . . .. . . . ... . .... . ......... .. . . . . . . .... . ......... . . . . .... .... . . . . .. . .......................... .... ..... ........ . .. . . .. ... . .. . . .. . .. . ...... . .. ............................................................... . . ... . ...... .
lowQualScore : 0 55555 5555 00 0 0 0 0 0 000000000 0 0 0 00000000 0 5 00 0 0 5 0 5555555 0 5555 5 777777 0 0000000 333 33 777 3 0 0 3 3 7 0 0 0 0 0 00 0 0 5 000 0 0000 0 555555555 00 0 0 0 0 0 0 5555 0 000000000 0 0 7 0 5555 5555 0 0 0 0 00 0 55555555555555555555555555 5555 00000 55555555 5 00 0 5 00 000 0 55 2 4 66 0 88 4 000000 6 44 555555555555555555555555555555555555555555555555555555555555555 3 5 222 5 333333 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-A-NG-GG-AGACATAA
Reference ( family-1017 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-A-NG-GG-AGACATAA
gi|1 : AAAGTTTTAGTGAATTCCAA-CTGATGGTTCAAGAGAAGCAACATAGTCAAGATTCTTCAAATCACTGAACTAGAATGCAAAATGGATATGCACAAA--------TATACTGAT-CCTCTCAGCA--CTTCATTGAAATGTGAGTTGATTCAAGAGATG----AAACATT------ACA--ATATTAATA--TTATTTAAAAAAAAATGCAAAAAAAAAAAGCTTGTCAGTCAAAAATCAATGAACAAGAACTTAAAA-GAAATATTCCCAACTAGACCTCACACTGATCCTTCCAATCAAGTTTCAGCTAAATTTGGCAACAGGTATC--GGAGCTCTCCAAACAAGATTTTTTAATTATGAAAAC-ACTAAAGGCTGTAACTTGGCCAAAATCTCC--AACTGCAACATAAAA-ACATATGCACAACTGGATCCCACACTGTTCC--CGTCAGCAAGTTTCAGCTAAA----------GATGTTGGAGAAGTTTTTTGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTGTAACTCTGTAAAAAATCACTGCAAAATGGATGTGCACTACAGGAACTCACACTTATCCTTCCTGGCAAATCTTACCTAAATCTGACTACAGATGTTAGAGTTCACCAGAC-----ATTTTTAAT--ATTT-TCAA-TGCAAATGGTCA-TAGAAAGTAATCAAGCT-GGAATGAAAAATGGATAC--GTACAATTAGACCTTACACTAATCCTTCCCAGCAAGTTTCA-G-TAAATCCAGCCTTAGATG------TCGGAGGAGT--TCTGTG------------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACA--ATGTCTCC-A--AGA-G-A-C--AG-AGACATAA
gi|10 : ttaggactggtgatagggctgcaagaaaaacttcaatagcactgaaaagcaaagtggatacacaagtttgatcaaaacacgatcattggctgtggagaagtatgggcacgatttttatatttgaaatttcaaaaaaaaaa-A-AGCACAAAAACACTTTGTCTCC-C--AGC-A-A----GG-AGATATAAt
gi|11 : ataggcagacggatggacagaAAAAACAATATATCTCCAC--AGA-A-AGTG-GG-AGACACAttc
gi|12 : acagaaggatggacatgaca-A-AACACAAAAACAATGTCTTTCT-G--AGA-G-G-GG-GA-AGATATctttaa
gi|13 : gcagacagacagacagatagc-A-AGCACAAAAACAATATGTCTCT-TTGAGA-G-A-GA-TG-AAACACA
gi|14 : acagacaaacagacagaGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAACAACATGTATCC-C--TGA-G-A-GG-GGTAGACAT
gi|16 : atgaaca-A-AGCACAAACA-AATATGACTCC-C--TGA-G-A-GG-GG-
gi|17 : acagaggaacaga--G-----A--A-A-AGCACACAAACAAAATGTCT---C--AGC-GAA-AG-GA-AGACATActgggggac
gi|18 : atggacagat--G-----A--A-A-AGCACAAAAACAACATGTCTTC-C--AGA-G-A-GA-GG-AGACATA
gi|19 : gacagatGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAA---TATGTCTCC-C--TGA-G-AGTG-GG-TGACA
gi|2 : acgAATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTAAAAAATCATC------C--AACCAAAACACAAAAGAAATAAGCA-AAACTAGGCCTTACACAAATACTTTTCAGTAAGTATCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACATT--TA----ATTCCGAAAA---TGCAAAGGACC-CAACT---CAGTCAAAAATCCACGAACCTGAACAAAAAA-GGGGTATGCACAACTAAACCTCATATTGATCTTTCCTAACAAACTTTAGCTTAATCTGACCACAGACATCTGGGAGTTATCCGGAAAAGA-TTTTTAATTCATATGACTGC-AATG---------CAGTCAAAACCCCTTGAACAGTAACATGAGAGATATATACTCAAGTATACCTTACATTGATCCTTC-TCAATTAGTTTCAGCTAAATCTGACCACAGTTGTAGGAGGAGTGGCCCGGACAAGATTTT
gi|21 : cttcatacAGATATGGGAGGAATTATCTGATCAAGATTTTgtgacagactgaggacaggtggaaatgtcttccagagatgcaggagacataa
gi|3 : TTTTTAATTCTG----AAATC----CAAAAGAGAAATGCACAACTAAATGTCATATTGATCCTTCCC--------------------------AGGTGTCAGAGTTATAAGGACATAAGATTTTTAATTC----CACAATTACAATGGGTCAGTCAAAAATCCTCAAACTGG-AACACAAAATGGATATATGCACAACTAGACCTCACACAGATCCTTTCCAGAATATTTTG-GCTAAATGCGACAACAGATA------TAGAAGGAGTTATCCG-GACAACACAGACGGA----T-----------------A--------GATG-----G--A-A-AGCACAAACACAATATGTCTCC-C--TGA-G-C-GGTGC-AGACAgtaaaagg
gi|4 : ctaatacaatctACACTGAGCCTCACCTGCATGCTTCA-GCTTTATCAAACCACAGATG------TAGAAGGAGTTATCC-TTACAA--------GA-TTTTGTGACTGACAGACAGACA--------G--GTGGACA--GAA-AGCACAAAAACAATATGTCTTC-C--TGA-GAA-TG-TG-AGACATaat
gi|5 : ccaCTTCATATAAGACTTT--TAATTTAAATAAAAAA---TGAAAAGGGCAATAACTT--C-GTAATAAATCATCAATCTACAATACAAAACGAAA-ACGCACAACTAGACCTTACACTGATCCTTTCCGGCAACTT
gi|6 : ccCTCACACTGATCCTTCCCAGCAAGTTTTG-GCTAAATCTGAAGACAGATGTACATATAAAAGAAGATATCTG-GATAA--------GACTTCT-----------------GTGACAGATG--G-----ACGG-ACAGCAC-AAAACAATATGTCTCC-C--TGACA-A-TA-GG-AGACATAgaccttacactga
gi|7 : ACCTGAAACAGATCCTTCCAAGCAA-TTCCAAGCTTTATCTGAACACTGATG------TCTGAGTAGTTCTC-GAGAAAA--------GA-TTTT-----------------GTAACAAATG--G-----A----A-AGCACAAAAACAATATCTCTCC-A--AGA-G-T-TGAGA-AGACATAA
gi|8 : TGACAG--------GA-TGGA-----------------A--------G--G-----A----A-AGCACAAAAAC--TATTTTTCC-A--AGA-G-T-GG-GGAAGGCATc
gi|9 : atattttgtggcagacaggt-----A--G-ACAGCGTAAAAGCAATATGTCTCC-C--AGA-A-AGCA-AG-AGACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGAAAGACGGACGGAAAGAAAGTATAAAAACAATGTTTTCCTGAATGTAGG
Unaligned ( gi|20 ): ATGTAAGTCATCCACACAAGAATTTTAGACCAACCGACTGACCAACC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 2222 11 333333333 1 33333333 1 11 3333333 2222 222222 1 2222222 222 222 1 11 1 1111 333333333 11 1 2222 333333333 2222 2222 88888888888888888888888888 22222 55555555 1 1 222 11 222222 000000000000000000000000000000000000000000000000000000000000000 111111
lowQualScore : 1 66666 3333 88 1 1 1 1 1 888888888 1 1 5 44444444 1 5 88 1 1 2 1 2222222 1 3333 2 888888 2 6666666 333 88 555 7 1 1 3 7 0 1 1 1 1 1 88 1 1 5 333 1 9999 1 777777777 88 1 5 1 1 1 1 3333 1 777777777 1 1 0 1 4444 3333 1 1 1 1 22 1 55555555555555555555555555 5555 77777 88888888 5 22 5 2 22 000 1 88 0 1 44 8 22 1 333333 0 11 333333333333333333333333333333333333333333333333333333333333333 5 2 444 2 666666 5
lowQualScore : . ..... .... .. . . . . . ......... . . . ........ . . .. . . . . ....... . .... . ...... . ....... ... .. ... . . . . . . . . . . . .. . . . ... . .... . ......... .. . . . . . . .... . ......... . . . . .... .... . . . . .. . .......................... .... ..... ........ . .. . . .. ... . .. . . .. . .. . ...... . .. ............................................................... . . ... . ...... .
lowQualScore : 0 55555 5555 00 0 0 0 0 0 000000000 0 0 0 00000000 0 5 00 0 0 5 0 5555555 0 5555 5 777777 0 0000000 333 33 777 3 0 0 3 3 7 0 0 0 0 0 00 0 0 5 000 0 0000 0 555555555 00 0 0 0 0 0 0 5555 0 000000000 0 0 7 0 5555 5555 0 0 0 0 00 0 55555555555555555555555555 5555 00000 55555555 5 00 0 5 00 000 0 55 2 4 66 0 88 4 000000 6 44 555555555555555555555555555555555555555555555555555555555555555 3 5 222 5 333333 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-A-NG-GG-AGACATAA
Reference ( family-1017 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-A-NG-GG-AGACATAA
gi|1 : AAAGTTTTAGTGAATTCCAA-CTGATGGTTCAAGAGAAGCAACATAGTCAAGATTCTTCAAATCACTGAACTAGAATGCAAAATGGATATGCACAAA--------TATACTGAT-CCTCTCAGCA--CTTCATTGAAATGTGAGTTGATTCAAGAGATG----AAACATT------ACA--ATATTAATA--TTATTTAAAAAAAAATGCAAAAAAAAAAAGCTTGTCAGTCAAAAATCAATGAACAAGAACTTAAAA-GAAATATTCCCAACTAGACCTCACACTGATCCTTCCAATCAAGTTTCAGCTAAATTTGGCAACAGGTATC--GGAGCTCTCCAAACAAGATTTTTTAATTATGAAAAC-ACTAAAGGCTGTAACTTGGCCAAAATCTCC--AACTGCAACATAAAA-ACATATGCACAACTGGATCCCACACTGTTCC--CGTCAGCAAGTTTCAGCTAAA----------GATGTTGGAGAAGTTTTTTGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTGTAACTCTGTAAAAAATCACTGCAAAATGGATGTGCACTACAGGAACTCACACTTATCCTTCCTGGCAAATCTTACCTAAATCTGACTACAGATGTTAGAGTTCACCAGAC-----ATTTTTAAT--ATTT-TCAA-TGCAAATGGTCA-TAGAAAGTAATCAAGCT-GGAATGAAAAATGGATAC--GTACAATTAGACCTTACACTAATCCTTCCCAGCAAGTTTCA-G-TAAATCCAGCCTTAGATG------TCGGAGGAGT--TCTGTG------------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACA--ATGTCTCC-A--AGA-G-A-C--AG-AGACATAA
gi|10 : ttaggactggtgatagggctgcaagaaaaacttcaatagcactgaaaagcaaagtggatacacaagtttgatcaaaacacgatcattggctgtggagaagtatgggcacgatttttatatttgaaatttcaaaaaaaaaa-A-AGCACAAAAACACTTTGTCTCC-C--AGC-A-A----GG-AGATATAAt
gi|11 : ataggcagacggatggacagaAAAAACAATATATCTCCAC--AGA-A-AGTG-GG-AGACACAttc
gi|12 : acagaaggatggacatgaca-A-AACACAAAAACAATGTCTTTCT-G--AGA-G-G-GG-GA-AGATATctttaa
gi|13 : gcagacagacagacagatagc-A-AGCACAAAAACAATATGTCTCT-TTGAGA-G-A-GA-TG-AAACACA
gi|14 : acagacaaacagacagaGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAACAACATGTATCC-C--TGA-G-A-GG-GGTAGACAT
gi|16 : atgaaca-A-AGCACAAACA-AATATGACTCC-C--TGA-G-A-GG-GG-
gi|17 : acagaggaacaga--G-----A--A-A-AGCACACAAACAAAATGTCT---C--AGC-GAA-AG-GA-AGACATActgggggac
gi|18 : atggacagat--G-----A--A-A-AGCACAAAAACAACATGTCTTC-C--AGA-G-A-GA-GG-AGACATA
gi|19 : gacagatGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAA---TATGTCTCC-C--TGA-G-AGTG-GG-TGACA
gi|2 : acgAATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTAAAAAATCATC------C--AACCAAAACACAAAAGAAATAAGCA-AAACTAGGCCTTACACAAATACTTTTCAGTAAGTATCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACATT--TA----ATTCCGAAAA---TGCAAAGGACC-CAACT---CAGTCAAAAATCCACGAACCTGAACAAAAAA-GGGGTATGCACAACTAAACCTCATATTGATCTTTCCTAACAAACTTTAGCTTAATCTGACCACAGACATCTGGGAGTTATCCGGAAAAGA-TTTTTAATTCATATGACTGC-AATG---------CAGTCAAAACCCCTTGAACAGTAACATGAGAGATATATACTCAAGTATACCTTACATTGATCCTTC-TCAATTAGTTTCAGCTAAATCTGACCACAGTTGTAGGAGGAGTGGCCCGGACAAGATTTT
gi|21 : cttcatacAGATATGGGAGGAATTATCTGATCAAGATTTTgtgacagactgaggacaggtggaaatgtcttccagagatgcaggagacataa
gi|3 : TTTTTAATTCTG----AAATC----CAAAAGAGAAATGCACAACTAAATGTCATATTGATCCTTCCC--------------------------AGGTGTCAGAGTTATAAGGACATAAGATTTTTAATTC----CACAATTACAATGGGTCAGTCAAAAATCCTCAAACTGG-AACACAAAATGGATATATGCACAACTAGACCTCACACAGATCCTTTCCAGAATATTTTG-GCTAAATGCGACAACAGATA------TAGAAGGAGTTATCCG-GACAACACAGACGGA----T-----------------A--------GATG-----G--A-A-AGCACAAACACAATATGTCTCC-C--TGA-G-C-GGTGC-AGACAgtaaaagg
gi|4 : ctaatacaatctACACTGAGCCTCACCTGCATGCTTCA-GCTTTATCAAACCACAGATG------TAGAAGGAGTTATCC-TTACAA--------GA-TTTTGTGACTGACAGACAGACA--------G--GTGGACA--GAA-AGCACAAAAACAATATGTCTTC-C--TGA-GAA-TG-TG-AGACATaat
gi|5 : ccaCTTCATATAAGACTTT--TAATTTAAATAAAAAA---TGAAAAGGGCAATAACTT--C-GTAATAAATCATCAATCTACAATACAAAACGAAA-ACGCACAACTAGACCTTACACTGATCCTTTCCGGCAACTT
gi|6 : ccCTCACACTGATCCTTCCCAGCAAGTTTTG-GCTAAATCTGAAGACAGATGTACATATAAAAGAAGATATCTG-GATAA--------GACTTCT-----------------GTGACAGATG--G-----ACGG-ACAGCAC-AAAACAATATGTCTCC-C--TGACA-A-TA-GG-AGACATAgaccttacactga
gi|7 : ACCTGAAACAGATCCTTCCAAGCAA-TTCCAAGCTTTATCTGAACACTGATG------TCTGAGTAGTTCTC-GAGAAAA--------GA-TTTT-----------------GTAACAAATG--G-----A----A-AGCACAAAAACAATATCTCTCC-A--AGA-G-T-TGAGA-AGACATAA
gi|8 : TGACAG--------GA-TGGA-----------------A--------G--G-----A----A-AGCACAAAAAC--TATTTTTCC-A--AGA-G-T-GG-GGAAGGCATc
gi|9 : atattttgtggcagacaggt-----A--G-ACAGCGTAAAAGCAATATGTCTCC-C--AGA-A-AGCA-AG-AGACAT
blockSeqs : T . AC . T T A A A C G A . CTAGGCCT A A AG A G T C . C TTGG A CTTCAG G TAATT . AT T A C A C T T A A T C TG A A . CAT T TGC T . TG A G T G T A TTC T TCTGACCAC A G T . . G A A T TG G . ATAA ATAAG TCCA T TG G C CC GG C AT A TA A AA C TACATA TA CTTACAAGATTTTGTGACTGACAGACAGACAGGTGGACAGA C A TGA C AGTG T
blockSeqs : CTTCAT A TA . C . . T C . . C G C G A T TG . TT A . TA TGGATAAGACTTCTGTGACAGATGGACGG C . A . AAAG A
blockSeqs : T AG . AA T . TA CGGACAACACAGACGGATAGATGGA . . A . AGTG .
blockSeqs : A A . TT T . TC GAGAAAAGATTTTGTAACAAATGGA . . A . CGGT .
blockSeqs : . . T . AATG .
blockSeqs : . . T . TTGA .
blockSeqs : . . A . AGCA .
blockSeqs : . . A . GGG .
blockSeqs : . . T . AGA .
blockSeqs : . . T . AGG .
blockSeqs : . . T . AGG .
blockSeqs : . . T . AGA .
blockSeqs : . . A . ATA .
blockSeqs : . . A . TGG .
blockSeqs : . A . A .
blockSeqCons : TA AGG***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-A-NG-GG-AGACATAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-GAGG---GG-AGACATAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGAAAGACGGACGGAAAGAAAGTATAAAAACAATGTTTTCCTGAATGTAGG
Unaligned ( gi|20 ): ATGTAAGTCATCCACACAAGAATTTTAGACCAACCGACTGACCAACC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 2222 11 333333333 1 33333333 1 11 3333333 2222 222222 1 2222222 222 222 1 11 1 1111 333333333 11 1 2222 333333333 2222 2222 88888888888888888888888888 22222 55555555 1 1 222 11 222222 000000000000000000000000000000000000000000000000000000000000000 111111
lowQualScore : 1 66666 3333 88 1 1 1 1 1 888888888 1 1 5 44444444 1 5 88 1 1 2 1 2222222 1 3333 2 888888 2 6666666 333 88 555 7 1 1 3 7 0 1 1 1 1 1 88 1 1 5 333 1 9999 1 777777777 88 1 5 1 1 1 1 3333 1 777777777 1 1 0 1 4444 3333 1 1 1 1 22 1 55555555555555555555555555 5555 77777 88888888 5 22 5 2 22 000 1 88 0 1 44 8 22 1 333333 0 11 333333333333333333333333333333333333333333333333333333333333333 5 2 444 2 222222 5
lowQualScore : . ..... .... .. . . . . . ......... . . . ........ . . .. . . . . ....... . .... . ...... . ....... ... .. ... . . . . . . . . . . . .. . . . ... . .... . ......... .. . . . . . . .... . ......... . . . . .... .... . . . . .. . .......................... .... ..... ........ . .. . . .. ... . .. . . .. . .. . ...... . .. ............................................................... . . ... . ...... .
lowQualScore : 0 55555 5555 00 0 0 0 0 0 000000000 0 0 0 00000000 0 5 00 0 0 5 0 5555555 0 5555 5 777777 0 0000000 333 33 777 3 0 0 3 3 7 0 0 0 0 0 00 0 0 5 000 0 0000 0 555555555 00 0 0 0 0 0 0 5555 0 000000000 0 0 7 0 5555 5555 0 0 0 0 00 0 55555555555555555555555555 5555 00000 55555555 5 00 0 5 00 000 0 55 2 4 66 0 88 4 000000 6 44 555555555555555555555555555555555555555555555555555555555555555 3 5 222 5 111111 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-AG-G-GG-AGACATAA
Reference ( family-1017 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAANGTTTTAGTGAATTCCAAACTGATGGTCCAAGAGANGCAACNCAGTNAAGANTCNTCAAATCACTGAACCAGAACGCAAAANGGATANGCACAAACTAGGCCTTACACNGATACCTCTCAGCAAGCNTCANCGAAATNTGAGCTGATTCAANAGATGTTGGAAACGTTCTTCA-ACAGGACATT--TA--TTATTTAAAAAA---TGCAAAGGACAANAACTT--CAGTCAAAAATCAACGAACNAGAACANAAAA-GAAATACGCACAACTAGACCTCACACTGATCCTTCCNANCAANTTTCAGCTNAATCTGGCNACAGGCATCTGGGAGCTNTCCGGANAAGATTTTTTAATTNNNANGACTGCTAANGGCTGTAACTCGGCCAAAACCCCCTGAACNGCAACATGAGAGACATATGCNCAANTGNACCCCACACTGNTCCTTCGTCAGCNAGTTTCAGCTAAATCTGACCACAGATGTNGGAGGAGTTNTCCGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTNTAACTCTGTAAAAAATCACTGCAAAANGGANGTGCACNACNGGANNTCACACTNATCCTTCCCGGCAAATCTTACCTAAATCTGACTACAGGTGTCAGAGTTNNNCGGACATAAGATTTTTAATTCATTTCNCAATTGCAANNGGTCAGTCGAAAGTNNTCAAGCTGGGAACGNAAAATGGATACATGCACAACTAGACCTCACACTGATCCTTCCCAGCAAGTTTCG-GCTAAATCCGACCACAGATG------TAGAAGGAGTTATCCGTGACAA--------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACAATATGTCTCC-C--AGA-G-AG-G-GG-AGACATAA
gi|1 : AAAGTTTTAGTGAATTCCAA-CTGATGGTTCAAGAGAAGCAACATAGTCAAGATTCTTCAAATCACTGAACTAGAATGCAAAATGGATATGCACAAA--------TATACTGAT-CCTCTCAGCA--CTTCATTGAAATGTGAGTTGATTCAAGAGATG----AAACATT------ACA--ATATTAATA--TTATTTAAAAAAAAATGCAAAAAAAAAAAGCTTGTCAGTCAAAAATCAATGAACAAGAACTTAAAA-GAAATATTCCCAACTAGACCTCACACTGATCCTTCCAATCAAGTTTCAGCTAAATTTGGCAACAGGTATC--GGAGCTCTCCAAACAAGATTTTTTAATTATGAAAAC-ACTAAAGGCTGTAACTTGGCCAAAATCTCC--AACTGCAACATAAAA-ACATATGCACAACTGGATCCCACACTGTTCC--CGTCAGCAAGTTTCAGCTAAA----------GATGTTGGAGAAGTTTTTTGGACAAGATTTTAAATTCCCAATATGCAAAGGTTTGTAACTCTGTAAAAAATCACTGCAAAATGGATGTGCACTACAGGAACTCACACTTATCCTTCCTGGCAAATCTTACCTAAATCTGACTACAGATGTTAGAGTTCACCAGAC-----ATTTTTAAT--ATTT-TCAA-TGCAAATGGTCA-TAGAAAGTAATCAAGCT-GGAATGAAAAATGGATAC--GTACAATTAGACCTTACACTAATCCTTCCCAGCAAGTTTCA-G-TAAATCCAGCCTTAGATG------TCGGAGGAGT--TCTGTG------------GA-TTTT-----------------A--------G--G-----A--G-A-AGCACAAAAACA--ATGTCTCC-A--AGA-G-A--C-AG-AGACATAA
gi|10 : ttaggactggtgatagggctgcaagaaaaacttcaatagcactgaaaagcaaagtggatacacaagtttgatcaaaacacgatcattggctgtggagaagtatgggcacgatttttatatttgaaatttcaaaaaaaaaa-A-AGCACAAAAACACTTTGTCTCC-C--AGC-A-A----GG-AGATATAAt
gi|11 : ataggcagacggatggacagaAAAAACAATATATCTCCAC--AGA-A-AGTG-GG-AGACACAttc
gi|12 : acagaaggatggacatgaca-A-AACACAAAAACAATGTCTTTCT-G--AGA-G-GG-G-GA-AGATATctttaa
gi|13 : gcagacagacagacagatagc-A-AGCACAAAAACAATATGTCTCT-TTGAGA-G-AG-A-TG-AAACACA
gi|14 : acagacaaacagacagaGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAACAACATGTATCC-C--TGA-G-AG-G-GGTAGACAT
gi|16 : atgaaca-A-AGCACAAACA-AATATGACTCC-C--TGA-G-AG-G-GG-
gi|17 : acagaggaacaga--G-----A--A-A-AGCACACAAACAAAATGTCT---C--AGC-GAAA-G-GA-AGACATActgggggac
gi|18 : atggacagat--G-----A--A-A-AGCACAAAAACAACATGTCTTC-C--AGA-G-AG-A-GG-AGACATA
gi|19 : gacagatGACA---------GA-T-----------------------------G--G-----A----A-AGCACAAAAA---TATGTCTCC-C--TGA-G-AGTG-GG-TGACA
gi|2 : acgAATGTTTTA-----TTCCAAAC--ATG--CCAAGAGATGTAACTCAGTAAAAAATCATC------C--AACCAAAACACAAAAGAAATAAGCA-AAACTAGGCCTTACACAAATACTTTTCAGTAAGTATCAGCTAAATCTGAGC-------ACAGATGTTGGAAAAGTTCTTCAGACAGGACATT--TA----ATTCCGAAAA---TGCAAAGGACC-CAACT---CAGTCAAAAATCCACGAACCTGAACAAAAAA-GGGGTATGCACAACTAAACCTCATATTGATCTTTCCTAACAAACTTTAGCTTAATCTGACCACAGACATCTGGGAGTTATCCGGAAAAGA-TTTTTAATTCATATGACTGC-AATG---------CAGTCAAAACCCCTTGAACAGTAACATGAGAGATATATACTCAAGTATACCTTACATTGATCCTTC-TCAATTAGTTTCAGCTAAATCTGACCACAGTTGTAGGAGGAGTGGCCCGGACAAGATTTT
gi|21 : cttcatacAGATATGGGAGGAATTATCTGATCAAGATTTTgtgacagactgaggacaggtggaaatgtcttccagagatgcaggagacataa
gi|3 : TTTTTAATTCTG----AAATC----CAAAAGAGAAATGCACAACTAAATGTCATATTGATCCTTCCC--------------------------AGGTGTCAGAGTTATAAGGACATAAGATTTTTAATTC----CACAATTACAATGGGTCAGTCAAAAATCCTCAAACTGG-AACACAAAATGGATATATGCACAACTAGACCTCACACAGATCCTTTCCAGAATATTTTG-GCTAAATGCGACAACAGATA------TAGAAGGAGTTATCCG-GACAACACAGACGGA----T-----------------A--------GATG-----G--A-A-AGCACAAACACAATATGTCTCC-C--TGA-G-CG-GTGC-AGACAgtaaaagg
gi|4 : ctaatacaatctACACTGAGCCTCACCTGCATGCTTCA-GCTTTATCAAACCACAGATG------TAGAAGGAGTTATCC-TTACAA--------GA-TTTTGTGACTGACAGACAGACA--------G--GTGGACA--GAA-AGCACAAAAACAATATGTCTTC-C--TGA-G-AATG-TG-AGACATaat
gi|5 : ccaCTTCATATAAGACTTT--TAATTTAAATAAAAAA---TGAAAAGGGCAATAACTT--C-GTAATAAATCATCAATCTACAATACAAAACGAAA-ACGCACAACTAGACCTTACACTGATCCTTTCCGGCAACTT
gi|6 : ccCTCACACTGATCCTTCCCAGCAAGTTTTG-GCTAAATCTGAAGACAGATGTACATATAAAAGAAGATATCTG-GATAA--------GACTTCT-----------------GTGACAGATG--G-----ACGG-ACAGCAC-AAAACAATATGTCTCC-C--TGACA-AT-A-GG-AGACATAgaccttacactga
gi|7 : ACCTGAAACAGATCCTTCCAAGCAA-TTCCAAGCTTTATCTGAACACTGATG------TCTGAGTAGTTCTC-GAGAAAA--------GA-TTTT-----------------GTAACAAATG--G-----A----A-AGCACAAAAACAATATCTCTCC-A--AGA-GTTG-A-GA-AGACATAA
gi|8 : TGACAG--------GA-TGGA-----------------A--------G--G-----A----A-AGCACAAAAAC--TATTTTTCC-A--AGA-G-TG-G-GGAAGGCATc
gi|9 : atattttgtggcagacaggt-----A--G-ACAGCGTAAAAGCAATATGTCTCC-C--AGA-A-AGCA-AG-AGACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGAAAGACGGACGGAAAGAAAGTATAAAAACAATGTTTTCCTGAATGTAGG
Unaligned ( gi|20 ): ATGTAAGTCATCCACACAAGAATTTTAGACCAACCGACTGACCAACC