lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222 666666666666666666666666666 111 222222 11111111111111111 22222222 1 11 11 111111111111111111111111111111111111111111111111111111111111111111111111111 1 9999999999999999 11 1
lowQualScore : 6 4 6 77777777777777 5 9 3 0 5 777777777777777777777777777 333 000000 2 2 22 77777 77777777777777777 4444 55555 77777777 333 2 8888 777 8 0 4 44 2 2 2 7 33 4 88 2 11 2 4 99 0 444444444444444444444444444444444444444444444444444444444444444444444444444 777 0 6 55 6666666666666666 3 88 6
lowQualScore : . . . .............. . . . . . ........................... ... ...... . . .. ..... ................. .... ..... ........ ... . .... ... . . . .. . . . . .. . .. . .. . . .. . ........................................................................... ... . . .. ................ . .. .
lowQualScore : 0 2 0 22222222222222 3 6 6 4 2 888888888888888888888888888 111 222222 5 5 99 33333 11111111111111111 5555 33333 11111111 777 1 9999 999 9 9 2 88 2 2 2 1 11 0 55 4 66 9 3 00 2 111111111111111111111111111111111111111111111111111111111111111111111111111 000 2 0 00 5555555555555555 6 33 8
consensus : ATGGGCGTAGACACGGGTGCGGCATGGTGCGGC-ATNGCCGC-ACCAATAATTAAT-ATTGGTGCGGCATT--GCC--------GCAC-CAATAA--TTTCAAAACT-TTTCTACA-T-TT-TTAGCTAATT--TC-AA--AAC--T--------------T----TT-----T--------T---A-CATTTATT----TTGTATGCCGCACCAATAATTTCCCA-TTTN-TT-CTTGTT-TT-ATAATTA--TCTTAAAT-T-CGGACGATGAT-GGCATTTG-TCATT---------CTGT--------CACCACTGGTGCTGCTCGTT---TT-A---AAGTC--TAC---A---------AAATTAC---AAGTTTTGTAAAATATTT--A-----NCCGCA--CCAA-TAT-CAAATTCGTGTCTACGCC
Reference ( gi|1 ) : ACGGGCGTAGACACGGGTACGGCATGGTGCGGT-ATAGCCGC-AGCAGTAACTAAT-ATTGGTGCGACAT---GCC--------TCGC-CAGTAT--TTTCAAAACT-CTTCTCCA-TGTT-TTAGCTAATT--TC-AA--AAC--T--------------T----TT-----TA-------T---A-CATTTATT----TTGTATGCCGCACTAGTAATGTCCCA-TTTG-TT-CTTGTT-TT-ATAATCA--TTTTAAAC-T-CGGACAGTGAT-GACATTTA-TCATTC--------CTGT--------CATCACTGGTGCTGCTTGTT---TT-A---AAGTC--TAC---A---------AAATTAC---AAGTTTTGTAAAATGTTT--A-----CACGCATTTC-A-TAA-CATATTCGTGTCTACACC
gi|3 : ATGAGCGTAAACATGAGTGCAGCATAATGTGGC-A--GCTGC-ACCAATAATTAAT-ATTGCTGCGGCAC---ACC---------------G--------CAAAACT---TCTACA-TTTT-TTAGTTAATT--TCCAA--AAT--A--------------T----TT-----TA-------T---A---TTTACT----T-GTATACCACATCAATAATTTCCCA-TTTT-TT-TTTGTT-TTTCTAATGA--TCATAAAT-T-CAGACAATGAT-GGCATTTG-TGGTAA--------TTGC--------CACCACTAGTACTGCTCATT---TA-C---AAATT--TAC---A---------AATTTAT---AAGTTTTGTAAAATATTT--AG----CCCAAA---A-A-TAT-CAAATTTGTGTCTACACC
gi|2 : ATGGGCGTAGAAACGGGTGCGGTATGGTGCGTC-ATTGCCGC-CCCAATAACTcct
gi|7 : tcATGGGCGTTGACATGGGTGCAGCAT----------TA-CTGC-A-CAATAA----T-ATTGTTGTGGCAT---GCC--------GCAT-CAATAA--TTTCAAA-CT-TTTCTACA-T-TT-TTAGTTAATT--TC-CA--AAC--T--------------T----TT-----T--------T---G-CATTTATT----TTG-------CACCAATAATTTCCCA-TTTA-TT-CTTGTT-TT-ATAATTA--TCTTAATT-T-CGAACAtcaaaacttttgtacattttaagttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|4 : attgacATGGGCGTAGACAAGGGTGCGGCATGGTGCA--------CGT---CAATAATCAGT-ATTGGGGCCGCAT---AC-----------------TATGATTTCAAAACCGTTTCTACA-T-TT-TTAGATAATT--TC-CA--AGT--TGTTGTTGGGGGGTTT----TT-----TT-------T---GGCATTTATT----TTGTATGCCACATCAATACT-TTCAA-TTTT-TT-CTTGTC-TT-ATAATTG--TCTTAAAT-T-CGGGCGATGAT-GACAaatcaacattaattgactacttgtaaaatatttagtcacaccaatatcaaattcgtgtccaggctcct
gi|17 : tagcATGGGCGTAGACACGAGTGCGGCATTGTGCGGC-Acaagttgtataaaatatttaaccacatcaatatcaagttcttatctacgcccct
gi|16 : acATGGGTGTAGAGATGGGTGCGGCATGGTGCGACAATAACCccaacaatttcaaaactcttctgcatgtttagtttattagctaactttttattttacgtttattttgtatgccgcaccaataatttccaattttccttgttttataaatatcttaaattcggatgacggcatttgtca
gi|15 : cATGGGCGTAAACATGCATGCGACATGGTACAAC-ATTACCAC--------ACCAAT-ATTaatgatttcaaaacttttgtacgtatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|6 : acATGGACGAAGACAAGGGTGCGGTATGGTGCGAC-ATTGCCGC-ACCAGTAATTTAT-AT---------AT---GC----------CGC-CAGCTT--CNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNN--NN-NN--NNN--N--------------N----NN-----NN-------N---N-NNNNNNNNNNCATTGCATGCTGCACCAATAATTTCCAA----A-CT-CT--TT-TT-ACATTTA--TTTTtccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcatttctacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|14 : GGTGCGGCATGGTG-------AACCG------ACAATTAAT-ATTGGTACGGCAT------------------------T--TTT---------TTCTACA-TTTT-TTATCTAATT--TC-CA--AAC--T--------------T----CT-----TT-------C---A-CGCTCA-T----GTGTGCGCCGCACCAATAATTTCCTA-TTTG--T-CTTGCC-TT-ATGAATA--TCTTTAAT-T-CGGACGATGAT-GGTATTTG-T-------------CTGT--------CAttatgtcacaccaataatttgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|23 : GTGCGATATGGTGCGGC-ATTGTCGC-GCCAATTATTAAT-ATaacctttaaacttaaatgaccgttaatgagat
gi|3 : TGCGGT-GT-GCCGC-AGCAATA-TTAATTATTGGTGCAGC-T---GCC--------
gi|11 : atgagcgtaaacatgagtgcagcataatgtGGT-GTAGACACCAACAATGA--GGT-AT-GGTGTGGCATT--GCT--------GCAC-AAATAA--TTTCAAAGAT-TTTCTACA-ATTT-TTAGCTTATT--TC-CA--ATC--T--------------T----TT-----T--------T---A-CATTTATT----TTGTATGCTGCACCAATAATTTTCTGTTTTT-TT-CTTGCT-TT-ATAATTA--TCTTAAAT-T-TGaaacttctacattttttagttaatttccaaaatattttatatttacttgtataccacatcaataatttcccatttttttttgtttttctaatgatcataaattcagacaatgatggcatttgtggtaattgccaccactagtactgctcatttacaaatttacaaatttataagttttgtaaaatatttagcccaaaaatatcaaatttgtgtctacacccct
gi|12 : caacatg-ACTGGTGCGGCTT---ATA--------TC----AATAA--TTT-GAAAC--ATTTTCCACTTTT-TTAGGTAATT--TC-CT--TAC--A--------------T----TT-----T--------T---A-CATTTATT----CTGTATGGCGCACCAACAATTTCCCA-TTTT-TT-CTTG----T-ATAATTA--TCTTAACT-T-CAGACGATGAT-GGCATTTG-TCG-----------CTG-----------CCACTGTTGC--------------------------AC---G---------AAATTAC---ATATTTTGTCAAATtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|8 : atacatagacggcgttcatc-ATGGATGCGACATT--GTG--------T-AC-CAATAA--TTTCACAAAT-TTTCTACA-GATT-TTAGCTAATT--TT-AT--AACATT--------------T----TT-----TACATTTTTT---A-CATTT-TT----TTATATGCCACAACAATAAT-TCCAA-TT----------TT-TT-ATAGTTA--TCTTAAAT-T-TGGTCAATAGT-CGCATTTC-TCAT-----------TGT--------------TGAT-----TCGTT---TTCG---AA--C--T----------------AAT--C---AAGATTTGTAACATATTG--AAGCCTCAC-CA-----A-TAT-CGAATTCGAGTCTACGCCa
gi|2 : agcgtaggcTGGTGCGTCATT--GCC--------GCCC-CAATAA--CTTCAAAACT-TTTGTACA-T-TT-TAAGTTGATT--TCCAA--AAG--T--------------T----GAAAAAATA-----------A-CATTTATT----TTGTGTGCCACACAAATAATTCTCCA-TTTGTTT-TTTCTT-TT-ATAATAA--TTTTAAAA-TACGAACGACAAT-GGCAATAG-TCATTT--------CTGTTTGACTGCCACCACTGGTGCGACTCATT---TT-A---AAGTCTGTAT---A---------CAATTAC---AAGTTCTATAAAATATAT--A-----GCCGCA--CCAA-TAT-CAAATTCTTGTCTACGCCcc
gi|5 : tcatgggcgtagaaacgggtgcggtaTGGTGCGGCATT--ACCAATTATTGCCGCACAATCA--TTTCAAAAC---------A-T----TTAGCTAATT--TC-CA--AATGTT--------------T----TT-----TACAT----T---A-AATTTATT----TTGTATGTCGCAACAATAATTGCCCA-TTTG-TT-CTTGTT-TT-ATACCTA--TCTTATAT-T-CGGACAATACTGGAC-TTTG-TCAT-----------TGT--------------TGAT-----TCGTT---TTCAAACAAATC--AAC---ATTTTAGAATAGATTAC---AAGTTTTGTAAAATATTT--A-----GCCGCA--CCAA-TAT-CAAATCCGTGTCTACACac
gi|15 : caTGGTACAACATT--ACC--------ACAC-CAATAT--TTCCGAAACT-TTTCTACA-T--T-TAAGCGAATT--GC-CA--AAC--TC-------------T----TT-----TT-------T---A-CATTTAGT----TTGTAAGCTGCATTGATAATTTCTCA-TTTtcc
gi|17 : acatgggcgtaaacatgcatgcgacaGTGCGGCATTGTGCG--------GCAC-CAACAA--TTTCAAAACT-CTTCTGCA-TGTT-T-AGTTTATT-----AGCTAAC--T--------------T----TT-----TA-------TTTTA-CGTTTATT----TTGTATGCCGCACCAATAATTTCCAA-TTT--TC-CTTGTT-TT-ATAAATA--TCTTAAAT-T-CGGA---TGAC-GGCATTTG-TCActacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|19 : acatgggcgtagacacgaC-CAATAA--TTTCAAAACT-TTTCTACA-TTTTCTTAGCAAACTGACC-AAT-AAT--T--------------T----TT-----T
gi|9 : TAA--TTTCAAAACC-TTTCT---------------AATT--TC-AA--AAC--T--------------TCGTTTT-----TG-------T-------TATATT----TTTCATGCCGCACCAATAATTTCCCA-TTT--TT-CTTGTT-TT-ATAATTATCTTTTATATGC-CGTAC---GAT-A--ATTTC-TCTTTT--------CT-T--------CTT--CT--TACTATTTAT-----------------------------------AATTACCTTAAA-TTTGTAAAATATAT--A-----GCCGCA--CCAA-TAT-CAAATTCTTGTCTAtcattatcataaattcggacgatgatagcattgttgatttgttggtgctgctcatttt
gi|13 : cgtatcatgggcatagacacgggcgtggcaAACT-TTTATCAA-TATT-T-AGCTTATT--TC-AA--AAC--T--------------C----TT-----T--------T---A-CATTTATTATTTTTGTATGCCGCACCAACAATTTTCCA-TTTT-TTTCTTGTT-TT-ATAATTA--TCTTAAAC-A-CGGACAATGAT-GGCATTTG-TTATT
gi|10 : ttgtatatactcattacggaagtagacatagctgccacacccaaaaaattTT-TTAGCTAATT--TT-CA--TCC--T--------------A----TT-----T--------T---A-CATTTATT----TTGTATGTCAAATCGATAATGTCCCA-TTTT-TT-CTCGTT-TA-AAAAT-A--TCTTAAAT-T-Cgatgtttctatttcgaacaaatc
gi|18 : GCTAATT--TC-AT--TTT--T--------------T----TT-----T--------T---A-CATTTATT----TTGTATGCTGCACCAATAATTTCCCATTTTT-TT-CTTGTT-TT-ATTATTA--TCTTAAAA-T-CGGACAATGAT-GGCACTTctaccacagcatttatacttgttgattcattttcaaacaactcaacatattagaatcggtaccttgtacatgttttgtaaaacatttataggcaccaatatcaaattcatgtctacatccctg
gi|16 : TGATT--TC-AA--AAC-----------------T----TT-----TG-------T---A-CGTATATT----TGGTATGCTGCAC----AA---------TTG-T------TT-TT-ATAAGCA--TCTTAAAT-T-CAGATGATGAT-GGCATTTG-TCATTCCTATAGGACTGC--------CACCACTGATGCTGCTCATTTTATT-A---AAGTC--TACTATA---------AAATTAC---AAtagaattgatattttattaaaaataaatctgcatcaaatttaaatttgtatctaaaccccagca
gi|19 : catgggtgtagagatgggtgcggcatggtgcgacaataaccaaTAATT--TC-AA--AAC--T--------------T----TT-----C--------T---A-CATTTTCT----TAGCAAACTG-ACCAATAAT-------TTT---------TT-TC-ATTATCA-----TAAAT-T-CGGACGATGAT-AGCATTGT-TGATT----------TGT--------------TGGTGCTGCTCATT---TT-
gi|20 : ccaa-------T---A-CATTTATT----TTATATGCCGCACCAATAAT------------TT-CTTGTTCTT-ATAATTA--TCTGAAAT-T-TGTAAA-------ATATTTAGCCACAC--------CTGT---------ATCA
gi|6 : ACATTTA-TTTTTT--------ATGT--------CA-CACCAATAAT--TTGAT---TT---------C--TAC---A---------AAATTAC---CAG-TTTGTAAAATATTTTAA-----C-CGCA--CCAA-TAT-CAAATCCGTGCCaattcgtacctacgccc
gi|15 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaataatttccaaactctttttTC--TAC---A---------AAATAAC---AAG-TTAGTAAAATATTT--AGC---CACAC----C-A-AAATCAAATTCATGTCAACGCC
gi|10 : acatgggcgtaaacatgcatgcgacatggtacaacattaccacaccaatatttccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcattTAC---ATGTTTTGTAAAACATTT--A-----TAGGCA--CCAA-TAT-CAAATTCATGTCTACATC
gi|11 : ttttagctaattttcatcctattttacatttattttgtatgtcaaatcgataatgtcccattttttctcgtttaaaaatatcttaaattcctaccacagcatttatacttgttgattcattttcaaacaactcaacatattagaatcggtaccttgTTTGTAAAATATTT--AGTTG-CAC-CA-----A-TAT-CAGATTCGTGTCTACACCcctg
gi|20 : caacatgggtgtagacaccaacaatgaggtatggtgtggcattgctgcacaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaaTTTGTAAAATATTT--A-----GCCACACCT--G-TAT-CAAATTCGTACCTACGCCc
gi|22 : tacatttattttatatgccgcaccaataatttcttgttcttataattatctgaaaTTGTAAAATATTT--A-----GCCGCAC--C-AATAT-CAAATCCGTGTCTACACc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TGCATATTTCGTAAATCTTTTAACATCAATATCAAATTTGTGTCTACACCCATGGATGC
Alignments
lowQualScore : 111111111 11111111111111111111111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111
lowQualScore : 0 555 3 3 3 3 7777 4 4 888888888 5555 33 0 2 33 444 4 1 1 44 22 22 88888888888888888888888888 22 44444 5555 1 1 66666 5555 333 2 3 8 2 33333 2 22 22 2 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4444444444 44 777777 2 33 0 33
lowQualScore : . ... . . . . .... . . ......... .... .. . . .. ... . . . .. .. .. .......................... .. ..... .... . . ..... .... ... . . . . ..... . .. .. . . ................................................................................................ .......... .. ...... . .. . ..
lowQualScore : 4 888 3 1 3 1 2222 4 1 222222222 7777 77 2 5 44 999 7 1 9 88 66 66 77777777777777777777777777 66 88888 7777 8 8 44444 7777 222 2 8 4 0 00000 0 88 88 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6666666666 22 222222 5 77 9 77
consensus : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGC-ATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTAC--A-T-TTTT-AGCTA-ATTTC-NA--AA--C----------T---------------T--TT-----T----T-A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TTTAG-CCGCA--CCAATATCAAATTCGTGTCTACGCC
Reference ( family-963 ) : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGC-ATNGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTAC--A-T-TTTT-AGCTA-ATTTC-AA--AA--C----------T---------------T--TT-----T----T-A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--G----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TTTAN-CCGCA--CCAATATCAAATTCGTGTCTACGCC
gi|1 : ACGGGCGTAGACACGGG---TAC-GGCATGG-TGCGGT-ATAGCCGCAGCAGTAACTAA-TATTGGTGCGACAT---G--CCTCG----CC--AGTATTTTCAAAACT-CTTCTCC--A-TGTTTT-AGCTA-ATTTC-AA--AA--C----------T---------------T--TT-----TA---T-A-CATT-----TATT----TTGT---ATGCCGCACTAGTAATGTCCCA-TTTGTT-CT-TG-TTTT-ATAATCATT--TT--AAAC-T-CGGACAGTGATGACATTTATCAT--TC--------CTGTCATCACTGGTGC--------TG-CTTGTT---TT---A-AA--G----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATG-TTTAC-ACGCATTTC-ATAACATATTCGTGTCTACACC
gi|10 : -TTTT-AGCTA-ATTTT-CA--TC--C----------T---------------A--TT-----T----T-A-CATT-----TATT----TTGT---ATGTCAAATCGATAATGTCCCA-TTTTTT-CT-CG--TTT-AAAAATATC--TT--AAAT-T-C---CTACCACAGCATTTAT-----------------------ACT--TGT--------TGATTCATT---TT---C-AA--ACAACTCA---------ACATATTA---------GAATCGGTACCTTGTACA--TGTT------TTGTAAAACA-TTTAT-AGGCA--CCAATATCAAATTCATGTCTAC
gi|11 : ATGGGTGTAGACACCAACAATGA-GGTATGG-TGTGGC-ATTGCTGCACatccctg
gi|11 : caacCACCAACAATGAGGTAT-GGTGTGGCAT--TG--CTGCA----CA--AATAATTTCAAAGAT-TTTCTAC--AAT-TTTT-AGCTT-ATTTC-CA--AT--C----------T---------------T--TT-----T----T-A-CATT-----TATT----TTGT---ATGCTGCACCAATAATTTTCTGTTTTTTT-CT-TG-CTTT-ATAATTATC--TT--AAAT-T-TGaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaatttgtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|11 : caacatgggtgtagaT------TTGTAAAATA-TTTAG-TTGCA--CCAATATCAGATTCGTGTCTACACCtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|12 : caacatgggtgtagacaccaacaatgaggtatggtgtggcattgctgcacaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaaACTGGTGCGGC-T--TA--T---A----TC--AATAATTTGAAACAT-TTTCCAC--T-T-TTTT-AGGTA-ATTTC-CT--TA--C----------A---------------T--TT-----T----T-A-CATT-----TATT----CTGT---ATGGCGCACCAACAATTTCCCA-TTTTTT-CT-TG----T-ATAATTATC--TT--AACT-T-CAGACGATGATGGCATTTGTCG-------------CTG---CCACTGTTGC------------------------------------------------AC-----G---------AAAT----------TACA--TATT------TTGTCAAATA-c
gi|13 : atacatagacggcgttcatc--TG--CCACA----CCCAAAAAATT----AACT-TTTATCA--A-T-ATTT-AGCTT-ATTTC-AA--AA--C----------T---------------C--TT-----T----T-A-CATT-----TATTATTTTTGT---ATGCCGCACCAACAATTTTCCA-TTTTTTTCT-TG-TTTT-ATAATTATC--TT--AAAC-A-CGGACAATGATGGCATTTGTTAT--T---------
gi|14 : ttgtatatactcattacggaagtagacatagcGG-TGCGGC-ATGGT-GAACCGACAATTAA-TATTGGTACGGCAT--T-----------------------------TT-TTTCTAC--A-T-TTTTTATCTA-ATTTC-CA--AA--C----------T---------------T--CT-----T----TCA-CGCT-----CATG----T-GT---GCGCCGCACCAATAATTTCCTA-TTTG-T-CT-TG-CCTT-ATGAATATC--TT--TAAT-T-CGGACGATGATGGTATTTG------T---------CTGTCAgatgtttctatttcgaacaaatc
gi|15 : ATGGGCGTAAACATGCA---TGC-GACATGG-TACAAC-ATTACCACACCAATATTTaacctttaaacttaaatgaccgttaatgagat
gi|15 : acTGGTACAACAT--TA--CCACA----CC--AATATTTCCGAAACT-TTTCTAC--A---TTTA-AGCGA-ATTGC-CA--AACTC----------T---------------T--TT-----T----T-A-CATT-----TAGT----TTGT---AAGCTGCATTGATAATTTCTCA-TTTCTccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcatttctacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|15 : acatgggcgtaaacatgcatgcgaca----TCT---------AC-----A---------AAAT----------AACA--AGTT------A-GTAAAATA-TTTAG-CCACA--CCAAAATCAAATTCATGTCAACGCCacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|16 : acatgggcgtaaacatgcatgcgacatggtacaacattaccacaccaatatttccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcattATGGGTGTAGAGATGGG---TGC-GGCATGG-TGCGACAATA-----ACCAATGATT
gi|16 : cATGGGTGCGGCATGGTG--CGACAATAACC--AATGATTTCAAAACT-TTTGTACGTA-T-ATTT-GG-TATGCTGC-AC--AA--T----------TG--------------T--TT-----T----T-A-TAtcaaaacttttgtacgtatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|16 : catgggtgtagagTG-ATTTC-AA--AA--C----------T---------------T--TT-----G----T-A-CGTA-----TATT----TGGT---ATGCTGCA-CAA------------TTGT--------TTTT-ATAAGCATC--TT--AAAT-T-CAGATGATGATGGCATTTGTCAT--TCCTATAGGACTGCCACCACTGATGC--------TG-CTCATTTTATT---A-AA--G----TCT---------ACTAT--A---------AAAT----------TACA--Aagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|17 : catgggtgtagagatgggtgcggcatggtgcgacaataaccaaATGGGCGTAGACACGAG---TGC-GGCATTG-TGCG---------GCACCAACAATT
gi|17 : acGTGCGGCAT--TGTGCGGCA----CC--AACAATTTCAAAACT-CTTCTGC--A-T-GTTT-AGTTT-ATT---AGCTAA--C----------T---------------T--TT-----TATTTT-A-CGTT-----TATT----TTGT---ATGCCGCACCAATAATTTCCAA-TTT-TC-CT-TG-TTTT-ATAAATATC--TT--AAAT-T-CG---GATGACGGCATTTGTCAtcaaaactcttctgcatgtttagtttattagctaactttttattttacgtttattttgtatgccgcaccaataatttccaattttccttgttttataaatatcttaaattcggatgacggcatttgtca
gi|18 : acatgggcgtagacacgaGCTA-ATTTC-AT--TT--T----------T---------------T--TT-----T----T-A-CATT-----TATT----TTGT---ATGCTGCACCAATAATTTCCCATTTTTTT-CT-TG-TTTT-ATTATTATC--TT--AAAA-T-CGGACAATGATGGCACTT
gi|19 : TA-ATTTC-AA--AA--C----------T---------------T--TT-----C----T-A-CATT-----TTCT----TAGC---AAACTG-ACCAATAATTT-------TTTT-C-------------ATTATC--AT--AAAT-T-CGGACGATGATAGCA-TTGTTGA--T---------TTGT------TGGTGC--------TG-CTCATT---TT---tagaattgatattttattaaaaataaatctgcatcaaatttaaatttgtatctaaaccccagca
gi|2 : ccaaATGGGCGTAGAAACGGG---TGC-GGTATGG-TGCGTC-ATTGCCGCCCCAATAACT
gi|2 : tcTGGTGCGTCAT--TG--CCGCC----CC--AATAACTTCAAAACT-TTTGTAC--A-T-TTTA-AGTTG-ATTTCCAA--AA--G----------T---------------T--GAAAAAAT----A-A-CATT-----TATT----TTGT---GTGCCACACAAATAATTCTCCA-TTTGTT-TT-TTCTTTT-ATAATAATT--TT--AAAA-TACGAACGACAATGGCAATAGTCAT--TTCTGTTTGACTGCCACCACTGGTGC--------GA-CTCATT---TT---A-AA--G----TCTGT-------AT-----A---------CAAT----------TACA--AGTT------CTATAAAATA-TATAG-CCGCA--CCAATATCAAATTCTTGTCTACGCCtcaaaacttttgtacattttaagttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|20 : tcatgggcgtagaaacgggtgcggta----T-A-CATT-----TATT----TTAT---ATGCCGCACCAATAATTTC-----TTGTT-C-------TT-ATAATTATC--TG--AAAT-T-TGac
gi|20 : T------TTGTAAAATA-TTTAG-CCACA--CCTGTATCAAATTCGTACCTACGCCtaaaatatttagccacacctgtatcaaattcgtacctacgccc
gi|21 : tacatttattttatatgccgcaccaataatttcttgttcttataattatctgaaaTT------TCGTAAATCT-TTTAA-C---A--TCAATATCAAATTTGTGTCTACACCc
gi|22 : tgcata------TTGTAAAATA-TTTAG-CCGCA--CCAATATCAAATCCGTGTCTACACcatggatgc
gi|23 : G---TGC-GATATGG-TGCGGC-ATTGTCGCGCCAATTATTAA-TATtcctttggaga
gi|3 : ATGAGCGTAAACATGAG---TGC-AGCATAA-TGTGGC-A--GCTGCACCAATAATTAA-TATTGCTGCGGCA----------CA----CC--G-------CAAAACT-T--CTAC--A-T-TTTTTAGTTA-ATTTC-CA--AA--A----------T---------------A--TT-----T----T-A-TATT-----TACT----T-GT---ATACCACATCAATAATTTCCCA-TTTTTT-TT-TG-TTTTTCTAATGATC--AT--AAAT-T-CAGACAATGATGGCATTTGTGGTAAT----------TGCCACCACTAGTAC--------TG-CTCATT---TA---C-AA--A----TTT---------AC-----A---------AATT----------TATA--AGTT------TTGTAAAATA-TTTAG-CC-CA--AAAATATCAAATTTGTGTCTACACC
gi|4 : ATGGGCGTAGACAAGGG---TGC-GGCATGG-TGCA----------CGTCAATAATCAG-TATTGGGGCCGCAT----------A----CT--A-TGATTTCAAAACCGTTTCTAC--A-T-TTTT-AGATA-ATTTC-CA--AG--T----------TGTTGTTGGGGGGTTTT--TT-----T----T-GGCATT-----TATT----TTGT---ATGCCACATCAATACTTTCA-A-TTTTTT-CT-TG-TCTT-ATAATTGTC--TT--AAAT-T-CGGGCGATGATGACAcct
gi|4 : tagcACA--AGTT------GTATAAAATA-TTTAA-CCACA--TCAATATCAAGTTCTTATCTACGCCcaagttgtataaaatatttaaccacatcaatatcaagttcttatctacgcccct
gi|5 : tagcatgggcgtagacaagggtgcggcatggtgcacgtcaataatcagtattggggccgcatactatgatttcaaaaccgtttctacatttttagataatttccaagttgttgttggggggttttttttggcatttattttgtatgccacatcaatactttcaattttttcttgtcttataattgtcttaaattcgggcgatgatgacCATGG-TGCGGC-ATTACC--------AATTA---------------T--TG--CCGCA----C---AATCATTTCAAAAC-----------A-T-TT---AGCTA-ATTTC-CA--AA--TG---------T---------------T--TT-----T----T-A-CATTAAATTTATT----TTGT---ATGTCGCAACAATAATTGCCCA-TTTGTT-CT-TG-TTTT-ATACCTATC--TT--ATAT-T-CGGACAATACTGGACTTTGTCAT--T-----------GT------TGAT--------------TCGTT---TTCAAACAA--A----TCA---------AC-----ATTTTAGAATAGAT----------TACA--AGTT------TTGTAAAATA-TTTAG-CCGCA--CCAATATCAAATCCGTGTCTACACcct
gi|6 : ATGGACGAAGACAAGGG---TGC-GGTATGG-TGCGAC-ATTGCCGCACCAGTAATTTA-TAT--ATGCCGC--------CAGCT----TC--NNNNNNNNNNNNNNN-NNNNNNN--N-N-NNNN-NNNNN-NNNNN-NN--NN--N----------N---------------N--NN-----N----N-N-NNNN-----NNCA----TTGC---ATGCTGCACCAATAATTTCCAA----ACT-CT----TTTT-ACATTTATT--TT--tcc
gi|6 : TA-ATTTC-CA--AA--C----------TC--------------T--TT-----T----T-A-CATT-----TATT----TTTT---ATGTCACACCAATAATTTttatgtcacaccaataatttgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|6 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaa----TCT---------AC-----A---------AAAT----------TACC--AG-T------TTGTAAAATATTTTAA-CCGCA--CCAATATCAAATCCGTGCCgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|7 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaataatttccaaactctttttacatttattttttatgtcacaccaataatttgattGACATGGG---CGTTGACATGGGTGCAGC-ATTACTGCAC----AAT-AA-TATTGTTGTGGCAT---G--CCGCA----TC--AATAATTTCAAA-CT-TTTCTAC--A-T-TTTT-AGTTA-ATTTC-CA--AA--C----------T---------------T--TT-----T----T-G-CATT-----TATT----TTG----------CACCAATAATTTCCCA-TTTATT-CT-TG-TTTT-ATAATTATC--TT--AATT-T-CGAACAA
gi|7 : att-----TATTG---TTGTGGCATGCCGCATCAATAATTTCAAA-CTT-TT-CTACA-TTTT--TAGTTAAT--TTCCAAAC-T--------TTTTTGCATTT---AT--T---------TTG-CACCAATAATTTCCCATTTATT-CTTGTT---TT---ATAATTA----TCTTAATTTCGAAC-----A---------AATC----------AACATTAATTGACTACTTGTAAAATA-TTTAG-TCACA--CCAATATCAAATTCGTGTCCAGGCatcaacattaattgactacttgtaaaatatttagtcacaccaatatcaaattcgtgtccaggctcct
gi|8 : attgacatgggcgttgacatgggtgcagcattactgcacaataaATGGATGCGACAT--TG--T-GTA----CC--AATAATTTCACAAAT-TTTCTAC--A-GATTTT-AGCTA-ATTTT-AT--AA--CATTTTTTACAT---------------T--TT-----T----T-A-CATT-----T-TT----TTAT---ATGCCACAACAATAATT-CCAA-TTT-----------TTT-ATAGTTATC--TT--AAAT-T-TGGTCAATAGTCGCATTTCTCAT--T-----------GT------TGAT--------------TCGTT---TT---C-GA--A-----CT---------A------------------AT------------CA--AGAT------TTGTAACATA-TTGAAGCCTCA--CCAATATCGAATTCGAGTCTACGCCtcct
gi|9 : agcgtaggcATGGGCATAGACACGGG---CGT-GGCATcc
gi|9 : cgtatcATAATTTCAAAACC-TTTCTA------------------ATTTC-AA--AA--C----------T---------------TCGTT-----T----T---TGTTA----TATT----TTTC---ATGCCGCACCAATAATTTCCCA-TTT-TT-CT-TG-TTTT-ATAATTATCTTTT--ATATGC-CGTACGATAATTTCTCTTTTC-T--T---------CT-TC-TTACTA--------------------T---TT---A-TA--A----T-T---------AC-----------------CT----------TA-A--A--T------TTGTAAAATA-TATAG-CCGCA--CCAATATCAAATTCTTGTCTAaatttcaaaacctttctaatttcaaaacttcgtttttgttatatttttcatgccgcaccaataatttcccatttttcttgttttataattatcttttatatgccgtacgataatttctcttttcttcttcttactatttataattaccttaaatttgtaaaatatatagccgcaccaatatcaaattcttgtcta
Alignments
lowQualScore : 111111111 11111111111111111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 0 555 3 3 1 00 11 4 4 888888888 5555 33 2 444 5 1 22 77777777777777777777777 22 555555 6666 6666 66666 5555 333 1 3 8 2 33333 2 22 22 2 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 666666 2 5555 2 66666 0 33
lowQualScore : . ... . . . .. .. . . ......... .... .. . ... . . .. ....................... .. ...... .... .... ..... .... ... . . . . ..... . .. .. . . ............................................................................................................... .. ...... . .... . ..... . ..
lowQualScore : 4 888 3 1 4 88 55 4 1 222222222 7777 77 5 999 0 0 88 00000000000000000000000 88 888888 0000 0000 44444 7777 222 0 8 4 0 00000 0 88 88 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 888888 4 3333 5 22222 2 44
consensus : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCCAAA--C----------T------------T--TT------T----T----ACATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
Reference ( family-963 ) : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCNAAA--C----------T------------T--TT------T----T----ACATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
gi|1 : ACGGGCGTAGACACGGG---TAC-GGCATGG-TGCGGTATAGCCGCAGCAGTAACTAA-TATTGGTGCGACAT---G--CCTCG----CC--AGTATTTTCAAAACT-CTTCTCCA-TGTTTT-AGCTAATTTCAAAA--C----------T------------T--TT------TA---T----ACATT-----TATT----TTGT---ATGCCGCACTAGTAATGTCCCA-TTTGTT-CT-TG-TTTT-ATAATCATT--TT--AAAC-T-CGGACAGTGATGACATTTATCAT--TC--------CTGTCATCACTGGTGC--------TG-CTTGTT---TT---A-AA--G----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATG-TT----TA-CA-----CGCATTTC-ATAACATATTCGTGTCTACACC
gi|10 : -TTTT-AGCTAATTTTCATC--C----------T------------A--TT------T----T----ACATT-----TATT----TTGT---ATGTCAAATCGATAATGTCCCA-TTTTTT-CT-CG--TTT-AAAAATATC--TT--AAAT-T-C---CTACCACAGCATTTAT-----------------------ACT--TGT--------TGATTCATT---TT---C-AA--ACAACTCA---------ACATATTA---------GAATCGGTACCTTGTACA--TGTT------TTGTAAAACA-TT----TA-TA-----GGCA--CCAATATCAAATTCATGTCTAC
gi|11 : ATGGGTGTAGACACCAACAATGA-GGTATGG-TGTGGCATTGCTGCACatccctg
gi|11 : caacCACCAACAATGAGGTAT-GGTGTGGCAT--TG--CTGCA----CA--AATAATTTCAAAGAT-TTTCTACAAT-TTTT-AGCTTATTTCCAAT--C----------T------------T--TT------T----T----ACATT-----TATT----TTGT---ATGCTGCACCAATAATTTTCTGTTTTTTT-CT-TG-CTTT-ATAATTATC--TT--AAAT-T-TGaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaatttgtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|11 : caacatgggtgtagaT------TTGTAAAATA-TT----TA-GT-----TGCA--CCAATATCAGATTCGTGTCTACACCtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|12 : caacatgggtgtagacaccaacaatgaggtatggtgtggcattgctgcacaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaaACTGGTGCGGC-T--TA--T---A----TC--AATAATTTGAAACAT-TTTCCACT-T-TTTT-AGGTAATTTCCTTA--C----------A------------T--TT------T----T----ACATT-----TATT----CTGT---ATGGCGCACCAACAATTTCCCA-TTTTTT-CT-TG----T-ATAATTATC--TT--AACT-T-CAGACGATGATGGCATTTGTCG-------------CTG---CCACTGTTGC------------------------------------------------AC-----G---------AAAT----------TACA--TATT------TTGTCAAATA-c
gi|13 : atacatagacggcgttcatc--TG--CCACA----CCCAAAAAATT----AACT-TTTATCAA-T-ATTT-AGCTTATTTCAAAA--C----------T------------C--TT------T----T----ACATT-----TATTATTTTTGT---ATGCCGCACCAACAATTTTCCA-TTTTTTTCT-TG-TTTT-ATAATTATC--TT--AAAC-A-CGGACAATGATGGCATTTGTTAT--T---------
gi|14 : ttgtatatactcattacggaagtagacatagcGG-TGCGGCATGGT-GAACCGACAATTAA-TATTGGTACGGCAT--T-----------------------------TT-TTTCTACA-T-TTTTTATCTAATTTCCAAA--C----------T------------T--CT------T----TC---ACGCT-----CATG----T-GT---GCGCCGCACCAATAATTTCCTA-TTTG-T-CT-TG-CCTT-ATGAATATC--TT--TAAT-T-CGGACGATGATGGTATTTG------T---------CTGTCAgatgtttctatttcgaacaaatc
gi|15 : ATGGGCGTAAACATGCA---TGC-GACATGG-TACAACATTACCACACCAATATTTaacctttaaacttaaatgaccgttaatgagat
gi|15 : acTGGTACAACAT--TA--CCACA----CC--AATATTTCCGAAACT-TTTCTACA---TTTA-AGCGAATTGCCAAACTC----------T------------T--TT------T----T----ACATT-----TAGT----TTGT---AAGCTGCATTGATAATTTCTCA-TTTCTccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcatttctacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|15 : acatgggcgtaaacatgcatgcgaca----TCT---------AC-----A---------AAAT----------AACA--AGTT------A-GTAAAATA-TT----TA-GC-----CACA--CCAAAATCAAATTCATGTCAACGCCacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|16 : acatgggcgtaaacatgcatgcgacatggtacaacattaccacaccaatatttccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcattATGGGTGTAGAGATGGG---TGC-GGCATGG-TGCGACAATA----ACCAATGATT
gi|16 : cATGGGTGCGGCATGGTG--CGACAATAACC--AATGATTTCAAAACT-TTTGTACG-T-tcaaaacttttgtacgtatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|16 : catgggtgtagagTGATTTCAAAA--C----------T------------T--TT------G----T----ACGTA-----TATT----TGGT---ATGCTGCA-CAA------------TTGT--------TTTT-ATAAGCATC--TT--AAAT-T-CAGATGATGATGGCATTTGTCAT--TCCTATAGGACTGCCACCACTGATGC--------TG-CTCATTTTATT---A-AA--G----TCT---------ACTAT--A---------AAAT----------TACA--Aatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|17 : catgggtgtagagatgggtgcggcatggtgcgacaataaccaaATGGGCGTAGACACGAG---TGC-GGCATTG-TGCG--------GCACCAACAATT
gi|17 : acGTGCGGCAT--TGTGCGGCA----CC--AACAATTTCAAAACT-CTTCTGCA-T-GTTT-AGTTTATTAGCTAA--C----------T------------T--TT------TATTTT----ACGTT-----TATT----TTGT---ATGCCGCACCAATAATTTCCAA-TTT-TC-CT-TG-TTTT-ATAAATATC--TT--AAAT-T-CG---GATGACGGCATTTGTCAtcaaaactcttctgcatgtttagtttattagctaactttttattttacgtttattttgtatgccgcaccaataatttccaattttccttgttttataaatatcttaaattcggatgacggcatttgtca
gi|18 : acatgggcgtagacacgaGCTAATTTCATTT--T----------T------------T--TT------T----T----ACATT-----TATT----TTGT---ATGCTGCACCAATAATTTCCCATTTTTTT-CT-TG-TTTT-ATTATTATC--TT--AAAA-T-CGGACAATGATGGCACTT
gi|19 : TAATTTCAAAA--C----------T------------T--TT------C----T----ACATT-----TTCT----TAGC---AAACTG-ACCAATAATTT-------TTTT-C-------------ATTATC--AT--AAAT-T-CGGACGATGATAGCA-TTGTTGA--T---------TTGT------TGGTGC--------TG-CTCATT---TT---tagaattgatattttattaaaaataaatctgcatcaaatttaaatttgtatctaaaccccagca
gi|2 : ccaaATGGGCGTAGAAACGGG---TGC-GGTATGG-TGCGTCATTGCCGCCCCAATAACT
gi|2 : tc---TT---A-AA--A----TGT---------AC-----A---------A----------------A--AGTT------TTG-AAGTTA-TTGGGGCG-GCAATGACGCA--CC-ATACCGCACCCGTTTCTACGCCtcaaaacttttgtacattttaagttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|2 : tcatgTGGTGCGTCAT--TG--CCGCC----CC--AATAACTTCAAAACT-TTTGTACA-T-TTTA-AGTTGATTTCCAAA--A----------G------------T--TGAAAAAAT----A----ACATT-----TATT----TTGT---GTGCCACACAAATAATTCTCCA-TTTGTT-TT-TTCTTTT-ATAATAATT--TT--AAAA-TACGAACGACAATGGCAATAGTCAT--TTCTGTTTGACTGCCACCACTGGTGC--------GA-CTCATT---TT---A-AA--G----TCTGT-------AT-----A---------CAAT----------TACA--AGTT------CTATAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTACGCCgttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|20 : tcatgggcgtagaaacgggtgcggta----T----ACATT-----TATT----TTAT---ATGCCGCACCAATAATTTC-----TTGTT-C-------TT-ATAATTATC--TG--AAAT-T-TGac
gi|20 : T------TTGTAAAATA-TT----TA-GC-----CACA--CCTGTATCAAATTCGTACCTACGCCtaaaatatttagccacacctgtatcaaattcgtacctacgccc
gi|21 : tacatttattttatatgccgcaccaataatttcttgttcttataattatctgaaaTT------TCGTAAATCT-TT----TA-AC--------A--TCAATATCAAATTTGTGTCTACACCc
gi|22 : tgcata------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcatggatgc
gi|23 : G---TGC-GATATGG-TGCGGCATTGTCGCGCCAATTATTAA-TATtcctttggaga
gi|3 : ATGAGCGTAAACATGAG---TGC-AGCATAA-TGTGGCA--GCTGCACCAATAATTAA-TATTGCTGCGGCA----------CA----CC--G-------CAAAACT-T--CTACA-T-TTTTTAGTTAATTTCCAAA--A----------T------------A--TT------T----T----ATATT-----TACT----T-GT---ATACCACATCAATAATTTCCCA-TTTTTT-TT-TG-TTTTTCTAATGATC--AT--AAAT-T-CAGACAATGATGGCATTTGTGGTAAT----------TGCCACCACTAGTAC--------TG-CTCATT---TA---C-AA--A----TTT---------AC-----A---------AATT----------TATA--AGTT------TTGTAAAATA-TT----TA-GC-----C-CA--AAAATATCAAATTTGTGTCTACACC
gi|4 : ATGGGCGTAGACAAGGG---TGC-GGCATGG-TG---------CACGTCAATAATCAG-TATTGGGGCCGCAT----------A----CT---ATGATTTCAAAACCGTTTCTACA-T-TTTT-AGATAATTTCCAAG--T----------TGTTGTTGGGGGGT--TT------T----TTTTGGCATT-----TATT----TTGT---ATGCCACATCAATACTTT-CAA-TTTTTT-CT-TG-TCTT-ATAATTGTC--TT--AAAT-T-CGGGCGATGATGACAcct
gi|4 : tagcACA--AGTT------GTATAAAATA-TT----TA-AC-----CACA--TCAATATCAAGTTCTTATCTACGCCcaagttgtataaaatatttaaccacatcaatatcaagttcttatctacgcccct
gi|5 : tagcatgggcgtagacaagggtgcggcatggtgcacgtcaataatcagtattggggccgcatactatgatttcaaaaccgtttctacatttttagataatttccaagttgttgttggggggttttttttggcatttattttgtatgccacatcaatactttcaattttttcttgtcttataattgtcttaaattcgggcgatgatgacCATGG-TGCGGCATTACC--------AATTA---------------T--TG--CCGCA----C---AATCATTTCAAAAC---------A-T-TT---AGCTAATTTCCAAA--TG---------T------------T--TT------T----T----ACATTAAATTTATT----TTGT---ATGTCGCAACAATAATTGCCCA-TTTGTT-CT-TG-TTTT-ATACCTATC--TT--ATAT-T-CGGACAATACTGGACTTTGTCAT--T-----------GT------TGAT--------------TCGTT---TTCAAACAA--A----TCA---------AC-----ATTTTAGAATAGAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcct
gi|6 : ATGGACGAAGACAAGGG---TGC-GGTATGG-TGCGACATTGCCGCACCAGTAATTTA-TAT--ATGCCGC--------CAGCT----TC--NNNNNNNNNNNNNNN-NNNNNNNN-N-NNNN-NNNNNNNNNNNNNN--N----------N------------N--NN------N----N----NNNNN-----NNCA----TTGC---ATGCTGCACCAATAATTTCCAA----ACT-CT----TTTT-ACATTTATT--TT--tcc
gi|6 : TAATTTCCAAA--C----------TC-----------T--TT------T----T----ACATT-----TATT----TTTT---ATGTCACACCAATAATTTttatgtcacaccaataatttgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|6 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaa----TCT---------AC-----A---------AAAT----------TACC--AG-T------TTGTAAAATATTT----TA-AC-----CGCA--CCAATATCAAATCCGTGCCgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|7 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaataatttccaaactctttttacatttattttttatgtcacaccaataatttgattGACATGGG---CGTTGACATGGGTGCAGCATTACTGCAC----AAT-AA-TATTGTTGTGGCAT---G--CCGCA----TC--AATAATTTCAAA-CT-TTTCTACA-T-TTTT-AGTTAATTTCCAAA--C----------T------------T--TT------T----T----GCATT-----TATT----TT----------GCACCAATAATTTCCCA-TTTATT-CT-TG-TTTT-ATAATTATC--TT--AATT-T-CGAACAA
gi|7 : att-----TATTG---TTGTGGCATGCCGCATCAATAATTTCAAA-CTT-TT-CTACA-TTTT--TAGTTAAT--TTCCAAAC-T--------TTTTTGCATTT---AT--T---------TTG-CACCAATAATTTCCCATTTATT-CTTGTT---TT---ATAATTA----TCTTAATTTCGAAC-----A---------AATC----------AACATTAATTGACTACTTGTAAAATA-TT----TA-GT-----CACA--CCAATATCAAATTCGTGTCCAGGCatcaacattaattgactacttgtaaaatatttagtcacaccaatatcaaattcgtgtccaggctcct
gi|8 : attgacatgggcgttgacatgggtgcagcattactgcacaataaATGGATGCGACAT--TG--T-GTA----CC--AATAATTTCACAAAT-TTTCTACA-GATTTT-AGCTAATTTTATAA--CATTTTTTACAT------------T--TT------T----T----ACATT-----T-TT----TTAT---ATGCCACAACAATAATT-CCAA-TTT-----------TTT-ATAGTTATC--TT--AAAT-T-TGGTCAATAGTCGCATTTCTCAT--T-----------GT------TGAT--------------TCGTT---TT---C-GA--A-----CT---------A------------------AT------------CA--AGAT------TTGTAACATA-TT----GAAGC-----CTCA--CCAATATCGAATTCGAGTCTACGCCtcct
gi|9 : agcgtaggcATGGGCATAGACACGGG---CGT-GGCATcc
gi|9 : cgtatcATAATTTCAAAACC-TTTCTA---------------ATTTCAAAA--C----------T------------TCGTT------T----T-----TGTTA----TATT----TTTC---ATGCCGCACCAATAATTTCCCA-TTT-TT-CT-TG-TTTT-ATAATTATCTTTT--ATATGC-CGTACGATAATTTCTCTTTTC-T--T---------CT-TC-TTACTA--------------------T---TT---A-TA--A----T-T---------AC-----------------CT----------TA-A--A--T------TTGTAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTAaatttcaaaacctttctaatttcaaaacttcgtttttgttatatttttcatgccgcaccaataatttcccatttttcttgttttataattatcttttatatgccgtacgataatttctcttttcttcttcttactatttataattaccttaaatttgtaaaatatatagccgcaccaatatcaaattcttgtcta
Alignments
lowQualScore : 111111111 22222222222222222222222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 0 555 3 3 3 00 33 4 4 888888888 5555 33 0 2 2 4 5 0 22222222222222222222222222 44 555555 6666 333 1 66666 5555 333 2 3 8 2 44444 2 22 22 2 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 666666 2 5555 2 66666 0 33
lowQualScore : . ... . . . .. .. . . ......... .... .. . . . . . . .......................... .. ...... .... ... . ..... .... ... . . . . ..... . .. .. . . ............................................................................................................... .. ...... . .... . ..... . ..
lowQualScore : 4 888 3 1 3 88 55 4 1 222222222 7777 77 2 5 5 7 0 6 00000000000000000000000000 88 888888 0000 333 9 44444 7777 222 2 8 4 0 22222 0 88 88 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 888888 4 3333 5 22222 2 44
consensus : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
Reference ( family-963 ) : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
gi|1 : ACGGGCGTAGACACGGG---TAC-GGCATGG-TGCGGTATAGCCGCAGCAGTAACTAA-TATTGGTGCGACAT---G--CCTCG----CC--AGTATTTTCAAAACT-CTTCTCCA-TGTTTT-AGCTAATTTCAAAAC----------T---------------T--TT------TA---T---A-CATT-----TATT----TTGT---ATGCCGCACTAGTAATGTCCCA-TTTGTT-CT-TG-TTTT-ATAATCATT--TT--AAAC-T-CGGACAGTGATGACATTTATCAT--TC--------CTGTCATCACTGGTGC--------TG-CTTGTT---TT---A-AA--G----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATG-TT----TA-CA-----CGCATTTC-ATAACATATTCGTGTCTACACC
gi|10 : -TTTT-AGCTAATTTTCATCC----------T---------------A--TT------T----T---A-CATT-----TATT----TTGT---ATGTCAAATCGATAATGTCCCA-TTTTTT-CT-CG--TTT-AAAAATATC--TT--AAAT-T-C---CTACCACAGCATTTAT-----------------------ACT--TGT--------TGATTCATT---TT---C-AA--ACAACTCA---------ACATATTA---------GAATCGGTACCTTGTACA--TGTT------TTGTAAAACA-TT----TA-TA-----GGCA--CCAATATCAAATTCATGTCTAC
gi|11 : ATGGGTGTAGACACCAACAATGA-GGTATGG-TGTGGCATTGCTGCACatccctg
gi|11 : caacCACCAACAATGAGGTAT-GGTGTGGCAT--TG--CTGCA----CA--AATAATTTCAAAGAT-TTTCTACAAT-TTTT-AGCTTATTTCCAATC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCTGCACCAATAATTTTCTGTTTTTTT-CT-TG-CTTT-ATAATTATC--TT--AAAT-T-TGaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaatttgtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|11 : caacatgggtgtagaT------TTGTAAAATA-TT----TA-GT-----TGCA--CCAATATCAGATTCGTGTCTACACCtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|12 : caacatgggtgtagacaccaacaatgaggtatggtgtggcattgctgcacaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaaACTGGTGCGGC-T--TA--T---A----TC--AATAATTTGAAACAT-TTTCCACT-T-TTTT-AGGTAATTTCCTTAC----------A---------------T--TT------T----T---A-CATT-----TATT----CTGT---ATGGCGCACCAACAATTTCCCA-TTTTTT-CT-TG----T-ATAATTATC--TT--AACT-T-CAGACGATGATGGCATTTGTCG-------------CTG---CCACTGTTGC------------------------------------------------AC-----G---------AAAT----------TACA--TATT------TTGTCAAATA-c
gi|13 : atacatagacggcgttcatc--TG--CCACA----CCCAAAAAATT----AACT-TTTATCAA-T-ATTT-AGCTTATTTCAAAAC----------T---------------C--TT------T----T---A-CATT-----TATTATTTTTGT---ATGCCGCACCAACAATTTTCCA-TTTTTTTCT-TG-TTTT-ATAATTATC--TT--AAAC-A-CGGACAATGATGGCATTTGTTAT--T---------
gi|14 : ttgtatatactcattacggaagtagacatagcGG-TGCGGCATGGT-GAACCGACAATTAA-TATTGGTACGGCAT--T-----------------------------TT-TTTCTACA-T-TTTTTATCTAATTTCCAAAC----------T---------------TC-TT------T----C---A-CGCT-----CA-T----GTGT---GCGCCGCACCAATAATTTCCTA-TTTG-T-CT-TG-CCTT-ATGAATATC--TT--TAAT-T-CGGACGATGATGGTATTTG------T---------CTGTCAgatgtttctatttcgaacaaatc
gi|15 : ATGGGCGTAAACATGCA---TGC-GACATGG-TACAACATTACCACACCAATATTTaacctttaaacttaaatgaccgttaatgagat
gi|15 : acTGGTACAACAT--TA--CCACA----CC--AATATTTCCGAAACT-TTTCTACA-T-TTA--AGCGAATTGCCAAAC----------TCT-------------T--TT------T----T---A-CATT-----TAGT----TTGT---AAGCTGCATTGATAATTTCTCA-TTTCTccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcatttctacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|15 : acatgggcgtaaacatgcatgcgaca----TCT---------AC-----A---------AAAT----------AACA--AGTT------A-GTAAAATA-TT----TA-GC-----CACA--CCAAAATCAAATTCATGTCAACGCCacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|16 : acatgggcgtaaacatgcatgcgacatggtacaacattaccacaccaatatttccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcattATGGGTGTAGAGATGGG---TGC-GGCATGG-TGCGACAATA----ACCAATGATT
gi|16 : cATGGGTGCGGCATGGTG--CGACAATAACC--AATGATTTCAAAACT-TTTGTACG-T-tcaaaacttttgtacgtatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|16 : catgggtgtagagTGATTTCAAAAC----------T---------------T--TT------G----T---A-CGTA-----TATT----TGGT---ATGCTGCAC----AATT---------GTT--------TTT-ATAAGCATC--TT--AAAT-T-CAGATGATGATGGCATTTGTCAT--TCCTATAGGACTGCCACCACTGATGC--------TG-CTCATTTTATT---A-AA--G----TCT---------ACTAT--A---------AAAT----------TACA--Aatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|17 : catgggtgtagagatgggtgcggcatggtgcgacaataaccaaATGGGCGTAGACACGAG---TGC-GGCATTG-TGCG--------GCACCAACAATT
gi|17 : acGTGCGGCAT--TGTGCGGCA----CC--AACAATTTCAAAACT-CTTCTGCA-T-GTTT-AGTTTATTAGCTAAC----------T---------------T--TT------TATTTT---A-CGTT-----TATT----TTGT---ATGCCGCACCAATAATTTCCAA-TTT-TC-CT-TG-TTTT-ATAAATATC--TT--AAAT-T-CG---GATGACGGCATTTGTCAtcaaaactcttctgcatgtttagtttattagctaactttttattttacgtttattttgtatgccgcaccaataatttccaattttccttgttttataaatatcttaaattcggatgacggcatttgtca
gi|18 : acatgggcgtagacacgaGCTAATTTC---AT----------T---------------T--TT------T----TTTTA-CATT-----TATT----TTGT---ATGCTGCACCAATAATTTCCCATTTTTTT-CT-TG-TTTT-ATTATTATC--TT--AAAA-T-CGGACAATGATGGCACTT
gi|19 : TAATTTCAAAAC----------T---------------T--TT------C----T---A-CATT-----TTCT----TAGC---AAACTG-ACCAATAATTT-------TTTT-C-------------ATTATC--AT--AAAT-T-CGGACGATGATAGCA-TTGTTGA--T---------TTGT------TGGTGC--------TG-CTCATT---TT---tagaattgatattttattaaaaataaatctgcatcaaatttaaatttgtatctaaaccccagca
gi|2 : ccaaATGGGCGTAGAAACGGG---TGC-GGTATGG-TGCGTCATTGCCGCCCCAATAACT
gi|2 : tc---TT---A-AA--A----TGT---------AC-----A---------A----------------A--AGTT------TTG-AAGTTA-TTGGGGCG-GCAATGACGCA--CC-ATACCGCACCCGTTTCTACGCCtcaaaacttttgtacattttaagttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|2 : tcatgTGGTGCGTCAT--TG--CCGCC----CC--AATAACTTCAAAACT-TTTGTACA-T-TTTA-AGTTGATTTCCAAAA----------G---------------T--TGAAAAAAT----A---A-CATT-----TATT----TTGT---GTGCCACACAAATAATTCTCCA-TTTGTT-TT-TTCTTTT-ATAATAATT--TT--AAAA-TACGAACGACAATGGCAATAGTCAT--TTCTGTTTGACTGCCACCACTGGTGC--------GA-CTCATT---TT---A-AA--G----TCTGT-------AT-----A---------CAAT----------TACA--AGTT------CTATAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTACGCCgttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|20 : tcatgggcgtagaaacgggtgcggta----T---A-CATT-----TATT----TTAT---ATGCCGCACCAATAATTTC-----TTGTT-C-------TT-ATAATTATC--TG--AAAT-T-TGac
gi|20 : T------TTGTAAAATA-TT----TA-GC-----CACA--CCTGTATCAAATTCGTACCTACGCCtaaaatatttagccacacctgtatcaaattcgtacctacgccc
gi|21 : tacatttattttatatgccgcaccaataatttcttgttcttataattatctgaaaTT------TCGTAAATCT-TT----TA-AC--------A--TCAATATCAAATTTGTGTCTACACCc
gi|22 : tgcata------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcatggatgc
gi|23 : G---TGC-GATATGG-TGCGGCATTGTCGCGCCAATTATTAA-TATtcctttggaga
gi|3 : ATGAGCGTAAACATGAG---TGC-AGCATAA-TGTGGCA--GCTGCACCAATAATTAA-TATTGCTGCGGCA----------CA----CC--G-------CAAAACT-T--CTACA-T-TTTTTAGTTAATTTCCAAAA----------T---------------A--TT------T----T---A-TATT-----TACT----T-GT---ATACCACATCAATAATTTCCCA-TTTTTT-TT-TG-TTTTTCTAATGATC--AT--AAAT-T-CAGACAATGATGGCATTTGTGGTAAT----------TGCCACCACTAGTAC--------TG-CTCATT---TA---C-AA--A----TTT---------AC-----A---------AATT----------TATA--AGTT------TTGTAAAATA-TT----TA-GC-----C-CA--AAAATATCAAATTTGTGTCTACACC
gi|4 : ATGGGCGTAGACAAGGG---TGC-GGCATGG-TGCA---------CGTCAATAATCAG-TATTGGGGCCGCAT----------A----CT--A-TGATTTCAAAACCGTTTCTACA-T-TTTT-AGATAATTTCCAAGT----------TGTTGTTGGGGGGTTTT--TT------T----T---GGCATT-----TATT----TTGT---ATGCCACATCAATACTTTCA-A-TTTTTT-CT-TG-TCTT-ATAATTGTC--TT--AAAT-T-CGGGCGATGATGACAcct
gi|4 : tagcACA--AGTT------GTATAAAATA-TT----TA-AC-----CACA--TCAATATCAAGTTCTTATCTACGCCcaagttgtataaaatatttaaccacatcaatatcaagttcttatctacgcccct
gi|5 : tagcatgggcgtagacaagggtgcggcatggtgcacgtcaataatcagtattggggccgcatactatgatttcaaaaccgtttctacatttttagataatttccaagttgttgttggggggttttttttggcatttattttgtatgccacatcaatactttcaattttttcttgtcttataattgtcttaaattcgggcgatgatgacCATGG-TGCGGCATTACC--------AATTA---------------T--TG--CCGCA----C---AATCATTTCAAAAC---------A-T-TT---AGCTAATTTCCAAATG---------T---------------T--TT------T----T---A-CATTAAATTTATT----TTGT---ATGTCGCAACAATAATTGCCCA-TTTGTT-CT-TG-TTTT-ATACCTATC--TT--ATAT-T-CGGACAATACTGGACTTTGTCAT--T-----------GT------TGAT--------------TCGTT---TTCAAACAA--A----TCA---------AC-----ATTTTAGAATAGAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcct
gi|6 : ATGGACGAAGACAAGGG---TGC-GGTATGG-TGCGACATTGCCGCACCAGTAATTTA-TAT--ATGCCGC--------CAGCT----TC--NNNNNNNNNNNNNNN-NNNNNNNN-N-NNNN-NNNNNNNNNNNNNNN----------N---------------N--NN------N----N---N-NNNN-----NNCA----TTGC---ATGCTGCACCAATAATTTCCAA----ACT-CT----TTTT-ACATTTATT--TT--tcc
gi|6 : TAATTTCCAAAC----------TC--------------T--TT------T----T---A-CATT-----TATT----TTTT---ATGTCACACCAATAATTTttatgtcacaccaataatttgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|6 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaa----TCT---------AC-----A---------AAAT----------TACC--AG-T------TTGTAAAATATTT----TA-AC-----CGCA--CCAATATCAAATCCGTGCCgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|7 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaataatttccaaactctttttacatttattttttatgtcacaccaataatttgattGACATGGG---CGTTGACATGGGTGCAGCATTACTGCAC----AAT-AA-TATTGTTGTGGCAT---G--CCGCA----TC--AATAATTTCAAA-CT-TTTCTACA-T-TTTT-AGTTAATTTCCAAAC----------T---------------T--TT------T----T---G-CATT-----TATT----TT----------GCACCAATAATTTCCCA-TTTATT-CT-TG-TTTT-ATAATTATC--TT--AATT-T-CGAACAA
gi|7 : att-----TATTG---TTGTGGCATGCCGCATCAATAATTTCAAA-CTT-TT-CTACA-TTTT--TAGTTAAT--TTCCAAAC-T--------TTTTTGCATTT---AT--T---------TTG-CACCAATAATTTCCCATTTATT-CTTGTT---TT---ATAATTA----TCTTAATTTCGAAC-----A---------AATC----------AACATTAATTGACTACTTGTAAAATA-TT----TA-GT-----CACA--CCAATATCAAATTCGTGTCCAGGCatcaacattaattgactacttgtaaaatatttagtcacaccaatatcaaattcgtgtccaggctcct
gi|8 : attgacatgggcgttgacatgggtgcagcattactgcacaataaATGGATGCGACAT--TG--T-GTA----CC--AATAATTTCACAAAT-TTTCTACA-GATTTT-AGCTAATTTTATAACATTTTTTACAT---------------T--TT------T----T---A-CATT-----T-TT----TTAT---ATGCCACAACAATAATT-CCAA-TTT-----------TTT-ATAGTTATC--TT--AAAT-T-TGGTCAATAGTCGCATTTCTCAT--T-----------GT------TGAT--------------TCGTT---TT---C-GA--A-----CT---------A------------------AT------------CA--AGAT------TTGTAACATA-TT----GAAGC-----CTCA--CCAATATCGAATTCGAGTCTACGCCtcct
gi|9 : agcgtaggcATGGGCATAGACACGGG---CGT-GGCATcc
gi|9 : cgtatcATAATTTCAAAACC-TTTCTA---------------ATTTCAAAAC----------T---------------TCGTT------T----T-----TGTTA----TATT----TTTC---ATGCCGCACCAATAATTTCCCA-TTT-TT-CT-TG-TTTT-ATAATTATCTTTT--ATATGC-CGTACGATAATTTCTCTTTTC-T--T---------CT-TC-TTACTA--------------------T---TT---A-TA--A----T-T---------AC-----------------CT----------TA-A--A--T------TTGTAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTAaatttcaaaacctttctaatttcaaaacttcgtttttgttatatttttcatgccgcaccaataatttcccatttttcttgttttataattatcttttatatgccgtacgataatttctcttttcttcttcttactatttataattaccttaaatttgtaaaatatatagccgcaccaatatcaaattcttgtcta
Alignments
lowQualScore : 111111111 22222222222222222222222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 0 555 3 3 3 00 33 4 4 888888888 5555 33 0 2 2 4 5 0 22222222222222222222222222 44 555555 6666 333 1 66666 5555 333 2 3 8 2 44444 2 22 22 2 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 666666 2 5555 2 66666 0 33
lowQualScore : . ... . . . .. .. . . ......... .... .. . . . . . . .......................... .. ...... .... ... . ..... .... ... . . . . ..... . .. .. . . ............................................................................................................... .. ...... . .... . ..... . ..
lowQualScore : 4 888 3 1 3 88 55 4 1 222222222 7777 77 2 5 5 7 0 6 00000000000000000000000000 88 888888 0000 333 9 44444 7777 222 2 8 4 0 22222 0 88 88 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 888888 4 3333 5 22222 2 44
consensus : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
Reference ( family-963 ) : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
gi|1 : ACGGGCGTAGACACGGG---TAC-GGCATGG-TGCGGTATAGCCGCAGCAGTAACTAA-TATTGGTGCGACAT---G--CCTCG----CC--AGTATTTTCAAAACT-CTTCTCCA-TGTTTT-AGCTAATTTCAAAAC----------T---------------T--TT------TA---T---A-CATT-----TATT----TTGT---ATGCCGCACTAGTAATGTCCCA-TTTGTT-CT-TG-TTTT-ATAATCATT--TT--AAAC-T-CGGACAGTGATGACATTTATCAT--TC--------CTGTCATCACTGGTGC--------TG-CTTGTT---TT---A-AA--G----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATG-TT----TA-CA-----CGCATTTC-ATAACATATTCGTGTCTACACC
gi|10 : -TTTT-AGCTAATTTTCATCC----------T---------------A--TT------T----T---A-CATT-----TATT----TTGT---ATGTCAAATCGATAATGTCCCA-TTTTTT-CT-CG--TTT-AAAAATATC--TT--AAAT-T-C---CTACCACAGCATTTAT-----------------------ACT--TGT--------TGATTCATT---TT---C-AA--ACAACTCA---------ACATATTA---------GAATCGGTACCTTGTACA--TGTT------TTGTAAAACA-TT----TA-TA-----GGCA--CCAATATCAAATTCATGTCTAC
gi|11 : ATGGGTGTAGACACCAACAATGA-GGTATGG-TGTGGCATTGCTGCACatccctg
gi|11 : caacCACCAACAATGAGGTAT-GGTGTGGCAT--TG--CTGCA----CA--AATAATTTCAAAGAT-TTTCTACAAT-TTTT-AGCTTATTTCCAATC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCTGCACCAATAATTTTCTGTTTTTTT-CT-TG-CTTT-ATAATTATC--TT--AAAT-T-TGaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaatttgtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|11 : caacatgggtgtagaT------TTGTAAAATA-TT----TA-GT-----TGCA--CCAATATCAGATTCGTGTCTACACCtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|12 : caacatgggtgtagacaccaacaatgaggtatggtgtggcattgctgcacaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaaACTGGTGCGGC-T--TA--T---A----TC--AATAATTTGAAACAT-TTTCCACT-T-TTTT-AGGTAATTTCCTTAC----------A---------------T--TT------T----T---A-CATT-----TATT----CTGT---ATGGCGCACCAACAATTTCCCA-TTTTTT-CT-TG----T-ATAATTATC--TT--AACT-T-CAGACGATGATGGCATTTGTCG-------------CTG---CCACTGTTGC------------------------------------------------AC-----G---------AAAT----------TACA--TATT------TTGTCAAATA-c
gi|13 : atacatagacggcgttcatc--TG--CCACA----CCCAAAAAATT----AACT-TTTATCAA-T-ATTT-AGCTTATTTCAAAAC----------T---------------C--TT------T----T---A-CATT-----TATTATTTTTGT---ATGCCGCACCAACAATTTTCCA-TTTTTTTCT-TG-TTTT-ATAATTATC--TT--AAAC-A-CGGACAATGATGGCATTTGTTAT--T---------
gi|14 : ttgtatatactcattacggaagtagacatagcGG-TGCGGCATGGT-GAACCGACAATTAA-TATTGGTACGGCAT--T-----------------------------TT-TTTCTACA-T-TTTTTATCTAATTTCCAAAC----------T---------------TC-TT------T----C---A-CGCT-----CA-T----GTGT---GCGCCGCACCAATAATTTCCTA-TTTG-T-CT-TG-CCTT-ATGAATATC--TT--TAAT-T-CGGACGATGATGGTATTTG------T---------CTGTCAgatgtttctatttcgaacaaatc
gi|15 : ATGGGCGTAAACATGCA---TGC-GACATGG-TACAACATTACCACACCAATATTTaacctttaaacttaaatgaccgttaatgagat
gi|15 : acTGGTACAACAT--TA--CCACA----CC--AATATTTCCGAAACT-TTTCTACA-T-TTA--AGCGAATTGCCAAAC----------TCT-------------T--TT------T----T---A-CATT-----TAGT----TTGT---AAGCTGCATTGATAATTTCTCA-TTTCTccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcatttctacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|15 : acatgggcgtaaacatgcatgcgaca----TCT---------AC-----A---------AAAT----------AACA--AGTT------A-GTAAAATA-TT----TA-GC-----CACA--CCAAAATCAAATTCATGTCAACGCCacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|16 : acatgggcgtaaacatgcatgcgacatggtacaacattaccacaccaatatttccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcattATGGGTGTAGAGATGGG---TGC-GGCATGG-TGCGACAATA----ACCAATGATT
gi|16 : cATGGGTGCGGCATGGTG--CGACAATAACC--AATGATTTCAAAACT-TTTGTACG-T-tcaaaacttttgtacgtatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|16 : catgggtgtagagTGATTTCAAAAC----------T---------------T--TT------G----T---A-CGTA-----TATT----TGGT---ATGCTGCAC----AATT---------GTT--------TTT-ATAAGCATC--TT--AAAT-T-CAGATGATGATGGCATTTGTCAT--TCCTATAGGACTGCCACCACTGATGC--------TG-CTCATTTTATT---A-AA--G----TCT---------ACTAT--A---------AAAT----------TACA--Aatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|17 : catgggtgtagagatgggtgcggcatggtgcgacaataaccaaATGGGCGTAGACACGAG---TGC-GGCATTG-TGCG--------GCACCAACAATT
gi|17 : acGTGCGGCAT--TGTGCGGCA----CC--AACAATTTCAAAACT-CTTCTGCA-T-GTTT-AGTTTATTAGCTAAC----------T---------------T--TT------TATTTT---A-CGTT-----TATT----TTGT---ATGCCGCACCAATAATTTCCAA-TTT-TC-CT-TG-TTTT-ATAAATATC--TT--AAAT-T-CG---GATGACGGCATTTGTCAtcaaaactcttctgcatgtttagtttattagctaactttttattttacgtttattttgtatgccgcaccaataatttccaattttccttgttttataaatatcttaaattcggatgacggcatttgtca
gi|18 : acatgggcgtagacacgaGCTAATTTC---AT----------T---------------T--TT------T----TTTTA-CATT-----TATT----TTGT---ATGCTGCACCAATAATTTCCCATTTTTTT-CT-TG-TTTT-ATTATTATC--TT--AAAA-T-CGGACAATGATGGCACTT
gi|19 : TAATTTCAAAAC----------T---------------T--TT------C----T---A-CATT-----TTCT----TAGC---AAACTG-ACCAATAATTT-------TTTT-C-------------ATTATC--AT--AAAT-T-CGGACGATGATAGCA-TTGTTGA--T---------TTGT------TGGTGC--------TG-CTCATT---TT---tagaattgatattttattaaaaataaatctgcatcaaatttaaatttgtatctaaaccccagca
gi|2 : ccaaATGGGCGTAGAAACGGG---TGC-GGTATGG-TGCGTCATTGCCGCCCCAATAACT
gi|2 : tc---TT---A-AA--A----TGT---------AC-----A---------A----------------A--AGTT------TTG-AAGTTA-TTGGGGCG-GCAATGACGCA--CC-ATACCGCACCCGTTTCTACGCCtcaaaacttttgtacattttaagttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|2 : tcatgTGGTGCGTCAT--TG--CCGCC----CC--AATAACTTCAAAACT-TTTGTACA-T-TTTA-AGTTGATTTCCAAAA----------G---------------T--TGAAAAAAT----A---A-CATT-----TATT----TTGT---GTGCCACACAAATAATTCTCCA-TTTGTT-TT-TTCTTTT-ATAATAATT--TT--AAAA-TACGAACGACAATGGCAATAGTCAT--TTCTGTTTGACTGCCACCACTGGTGC--------GA-CTCATT---TT---A-AA--G----TCTGT-------AT-----A---------CAAT----------TACA--AGTT------CTATAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTACGCCgttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|20 : tcatgggcgtagaaacgggtgcggta----T---A-CATT-----TATT----TTAT---ATGCCGCACCAATAATTTC-----TTGTT-C-------TT-ATAATTATC--TG--AAAT-T-TGac
gi|20 : T------TTGTAAAATA-TT----TA-GC-----CACA--CCTGTATCAAATTCGTACCTACGCCtaaaatatttagccacacctgtatcaaattcgtacctacgccc
gi|21 : tacatttattttatatgccgcaccaataatttcttgttcttataattatctgaaaTT------TCGTAAATCT-TT----TA-AC--------A--TCAATATCAAATTTGTGTCTACACCc
gi|22 : tgcata------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcatggatgc
gi|23 : G---TGC-GATATGG-TGCGGCATTGTCGCGCCAATTATTAA-TATtcctttggaga
gi|3 : ATGAGCGTAAACATGAG---TGC-AGCATAA-TGTGGCA--GCTGCACCAATAATTAA-TATTGCTGCGGCA----------CA----CC--G-------CAAAACT-T--CTACA-T-TTTTTAGTTAATTTCCAAAA----------T---------------A--TT------T----T---A-TATT-----TACT----T-GT---ATACCACATCAATAATTTCCCA-TTTTTT-TT-TG-TTTTTCTAATGATC--AT--AAAT-T-CAGACAATGATGGCATTTGTGGTAAT----------TGCCACCACTAGTAC--------TG-CTCATT---TA---C-AA--A----TTT---------AC-----A---------AATT----------TATA--AGTT------TTGTAAAATA-TT----TA-GC-----C-CA--AAAATATCAAATTTGTGTCTACACC
gi|4 : ATGGGCGTAGACAAGGG---TGC-GGCATGG-TGCA---------CGTCAATAATCAG-TATTGGGGCCGCAT----------A----CT--A-TGATTTCAAAACCGTTTCTACA-T-TTTT-AGATAATTTCCAAGT----------TGTTGTTGGGGGGTTTT--TT------T----T---GGCATT-----TATT----TTGT---ATGCCACATCAATACTTTCA-A-TTTTTT-CT-TG-TCTT-ATAATTGTC--TT--AAAT-T-CGGGCGATGATGACAcct
gi|4 : tagcACA--AGTT------GTATAAAATA-TT----TA-AC-----CACA--TCAATATCAAGTTCTTATCTACGCCcaagttgtataaaatatttaaccacatcaatatcaagttcttatctacgcccct
gi|5 : tagcatgggcgtagacaagggtgcggcatggtgcacgtcaataatcagtattggggccgcatactatgatttcaaaaccgtttctacatttttagataatttccaagttgttgttggggggttttttttggcatttattttgtatgccacatcaatactttcaattttttcttgtcttataattgtcttaaattcgggcgatgatgacCATGG-TGCGGCATTACC--------AATTA---------------T--TG--CCGCA----C---AATCATTTCAAAAC---------A-T-TT---AGCTAATTTCCAAATG---------T---------------T--TT------T----T---A-CATTAAATTTATT----TTGT---ATGTCGCAACAATAATTGCCCA-TTTGTT-CT-TG-TTTT-ATACCTATC--TT--ATAT-T-CGGACAATACTGGACTTTGTCAT--T-----------GT------TGAT--------------TCGTT---TTCAAACAA--A----TCA---------AC-----ATTTTAGAATAGAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcct
gi|6 : ATGGACGAAGACAAGGG---TGC-GGTATGG-TGCGACATTGCCGCACCAGTAATTTA-TAT--ATGCCGC--------CAGCT----TC--NNNNNNNNNNNNNNN-NNNNNNNN-N-NNNN-NNNNNNNNNNNNNNN----------N---------------N--NN------N----N---N-NNNN-----NNCA----TTGC---ATGCTGCACCAATAATTTCCAA----ACT-CT----TTTT-ACATTTATT--TT--tcc
gi|6 : TAATTTCCAAAC----------TC--------------T--TT------T----T---A-CATT-----TATT----TTTT---ATGTCACACCAATAATTTttatgtcacaccaataatttgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|6 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaa----TCT---------AC-----A---------AAAT----------TACC--AG-T------TTGTAAAATATTT----TA-AC-----CGCA--CCAATATCAAATCCGTGCCgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|7 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaataatttccaaactctttttacatttattttttatgtcacaccaataatttgattGACATGGG---CGTTGACATGGGTGCAGCATTACTGCAC----AAT-AA-TATTGTTGTGGCAT---G--CCGCA----TC--AATAATTTCAAA-CT-TTTCTACA-T-TTTT-AGTTAATTTCCAAAC----------T---------------T--TT------T----T---G-CATT-----TATT----TT----------GCACCAATAATTTCCCA-TTTATT-CT-TG-TTTT-ATAATTATC--TT--AATT-T-CGAACAA
gi|7 : att-----TATTG---TTGTGGCATGCCGCATCAATAATTTCAAA-CTT-TT-CTACA-TTTT--TAGTTAAT--TTCCAAAC-T--------TTTTTGCATTT---AT--T---------TTG-CACCAATAATTTCCCATTTATT-CTTGTT---TT---ATAATTA----TCTTAATTTCGAAC-----A---------AATC----------AACATTAATTGACTACTTGTAAAATA-TT----TA-GT-----CACA--CCAATATCAAATTCGTGTCCAGGCatcaacattaattgactacttgtaaaatatttagtcacaccaatatcaaattcgtgtccaggctcct
gi|8 : attgacatgggcgttgacatgggtgcagcattactgcacaataaATGGATGCGACAT--TG--T-GTA----CC--AATAATTTCACAAAT-TTTCTACA-GATTTT-AGCTAATTTTATAACATTTTTTACAT---------------T--TT------T----T---A-CATT-----T-TT----TTAT---ATGCCACAACAATAATT-CCAA-TTT-----------TTT-ATAGTTATC--TT--AAAT-T-TGGTCAATAGTCGCATTTCTCAT--T-----------GT------TGAT--------------TCGTT---TT---C-GA--A-----CT---------A------------------AT------------CA--AGAT------TTGTAACATA-TT----GAAGC-----CTCA--CCAATATCGAATTCGAGTCTACGCCtcct
gi|9 : agcgtaggcATGGGCATAGACACGGG---CGT-GGCATcc
gi|9 : cgtatcATAATTTCAAAACC-TTTCTA---------------ATTTCAAAAC----------T---------------TCGTT------T----T-----TGTTA----TATT----TTTC---ATGCCGCACCAATAATTTCCCA-TTT-TT-CT-TG-TTTT-ATAATTATCTTTT--ATATGC-CGTACGATAATTTCTCTTTTC-T--T---------CT-TC-TTACTA--------------------T---TT---A-TA--A----T-T---------AC-----------------CT----------TA-A--A--T------TTGTAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTAaatttcaaaacctttctaatttcaaaacttcgtttttgttatatttttcatgccgcaccaataatttcccatttttcttgttttataattatcttttatatgccgtacgataatttctcttttcttcttcttactatttataattaccttaaatttgtaaaatatatagccgcaccaatatcaaattcttgtcta
blockSeqs : CAA T G G CT G T GGTGCGA ATAA CA G A A T TGTTGTTGGGGGGTTT CG AAAAAA ATTT TTT G AAATT ATTT GGC C T T T TTCT T TT CC G A ATTTTGCACCAATAATTTCCCATTTATTCTTGTTTTATAATTATCTTAATTTCGAACAAATCA TT GACTAC T GGGG A AATGA .
blockSeqs : . . . G CC . T TGTGCGG . . . . . T ATTTTTTACAT C . . . . A G . T T T . ACAT . . . . . CATTCCTATAGGACTGCCACCACTGATGCTGCTCATTTTATTAAAGTCTACTATAAAATT . . . . . . .
blockSeqs : . . . A CC . T TGCTG . . . . . . TCT . . . . . . . . C . T . TGC . . . . . CATTTCTGTTTGACTGCCACCACTGGTGCGACTCATTTTAAAGTCTGTATACAATT . . . . . . .
blockSeqs : . . . A TC . G TGCCA . . . . . . GT . . . . . . . . C . T . TGT . . . . . ACTTGTTGATTCATTTTCAAACAACTCAACATATTAGAATCGGTACCTTGT . . . . . . .
blockSeqs : . . . T CT . T TACCA . . . . . . TC . . . . . . . . T . G . TGC . . . . . GGTAATTGCCACCACTAGTACTGCTCATTTACAAATTTACAAATTT . . . . . . .
blockSeqs : . . . G CC . T TGCCG . . . . . . T . . . . . . . . C . C . TGT . . . . . CATTGTTGATTCGTTTTCAAACAAATCAACATTTTAGAATAGATT . . . . . . .
blockSeqs : . . . G CC . T TGCCG . . . . . . T . . . . . . . . A . G . TGT . . . . . CTTCTTCTTACTATTTATAATTACCTT . . . . . . .
blockSeqs : . . . G CT . T GCCG . . . . . . A . . . . . . . . C . T . TGT . . . . . CATTGTTGATTCGTTTTCGAACTAAT . . . . . . .
blockSeqs : . . . A T G TGTG . . . . . . T . . . . . . . . C . T . TGT . . . . . CGCTGCCACTGTTGCACGAAATT . . . . . . .
blockSeqs : . . . G . . TAT . . . . . . T . . . . . . . . C . G . TGT . . . . . . . . . . . .
blockSeqs : . . . . . . CAG . . . . . . T . . . . . . . . C . G . TGT . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . T . . . . . . . . A . T . TGT . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . C . T . CG . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . A . G . TG . . . . . . . . . . .
blockSeqs : . . . . G . . . . . . . . A . A . T . . . . . . . . . . .
blockSeqs : . T . . . . . . . . C . A . . . . . . . . .
blockSeqs : N . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . .
blockSeqCons : TGCG***** **** **
originalCons : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCAT--TG--CCGCA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
finalCons : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATTAA-TATTGGTGCGGCATTGCG-----CA----CC--AATAATTTCAAAACT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T---------------T--TT------T----T---A-CATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
Alignments
lowQualScore : 222222222222 11111111111111111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 0 555 3 3 1 77777 555 4 2 1 2 0 555555555555 33 1 33 2 2 4 44 0 99999999999999999999999 44 555555 6666 7777 66666 5555 333 1 3 8 2 33333 2 22 22 2 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 666666 2 5555 2 66666 0 33
lowQualScore : . ... . . . ..... ... . . . . . ............ .. . .. . . . .. . ....................... .. ...... .... .... ..... .... ... . . . . ..... . .. .. . . ............................................................................................................... .. ...... . .... . ..... . ..
lowQualScore : 4 888 3 1 4 66666 444 0 7 1 7 8 222222222222 44 0 22 4 4 4 99 6 88888888888888888888888 88 888888 0000 4444 44444 7777 222 0 8 4 0 00000 0 88 88 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 99 888888 4 3333 5 22222 2 44
consensus : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATT---AA-TAT-TGGTG-CGGCATT---GC-GC---ACC--AATAATTTCAAAA--CT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T------------T--TT------T----T----ACATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
Reference ( family-963 ) : ATGGGCGTAGACACGGG---TGC-GGCATGG-TGCGGCATTGCCGCACCAATAATT---AA-TAT-TGGTG-CGGCATT---GC-GC---ACC--AATAATTTCAAAA--CT-TTTCTACA-T-TTTT-AGCTAATTTCCAAAC----------T------------T--TT------T----T----ACATT-----TATT----TTGT---ATGCCGCACCAATAATTTCCCA-TTTNTT-CT-TG-TTTT-ATAATTATC--TT--AAAT-T-CGGACGATGATGGCATTTGTCAT--T---------CTGTCACCACTGGTGC--------TG-CTCGTT---TT---A-AA--A----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATTCGTGTCTACGCC
gi|1 : ACGGGCGTAGACACGGG---TAC-GGCATGG-TGCGGTATAGCCGCAGCAGTAACT---AA-TAT-TGGTG-CGACATG---CC-TC---GCC--AGTATTTTCAAAA--CT-CTTCTCCA-TGTTTT-AGCTAATTTCAAAAC----------T------------T--TT------TA---T----ACATT-----TATT----TTGT---ATGCCGCACTAGTAATGTCCCA-TTTGTT-CT-TG-TTTT-ATAATCATT--TT--AAAC-T-CGGACAGTGATGACATTTATCAT--TC--------CTGTCATCACTGGTGC--------TG-CTTGTT---TT---A-AA--G----TCT---------AC-----A---------AAAT----------TACA--AGTT------TTGTAAAATG-TT----TA-CA-----CGCATTTC-ATAACATATTCGTGTCTACACC
gi|10 : -TTTT-AGCTAATTTTCATCC----------T------------A--TT------T----T----ACATT-----TATT----TTGT---ATGTCAAATCGATAATGTCCCA-TTTTTT-CT-CG--TTT-AAAAATATC--TT--AAAT-T-C---CTACCACAGCATTTAT-----------------------ACT--TGT--------TGATTCATT---TT---C-AA--ACAACTCA---------ACATATTA---------GAATCGGTACCTTGTACA--TGTT------TTGTAAAACA-TT----TA-TA-----GGCA--CCAATATCAAATTCATGTCTAC
gi|11 : ATGGGTGTAGACACCAACAATGA-GGTATGG-TGTGGCATTGCTGCACatccctg
gi|11 : caacCACCAACAATG---AGGTAT--GGTG-TGGCATT---GCTGC---ACA--AATAATTTCAAAG--AT-TTTCTACAAT-TTTT-AGCTTATTTCCAATC----------T------------T--TT------T----T----ACATT-----TATT----TTGT---ATGCTGCACCAATAATTTTCTGTTTTTTT-CT-TG-CTTT-ATAATTATC--TT--AAAT-T-TGaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaatttgtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|11 : caacatgggtgtagaT------TTGTAAAATA-TT----TA-GT-----TGCA--CCAATATCAGATTCGTGTCTACACCtaaaatatttagttgcaccaatatcagattcgtgtctacaccc
gi|12 : caacatgggtgtagacaccaacaatgaggtatggtgtggcattgctgcacaaataatttcaaagattttctacaatttttagcttatttccaatcttttttacatttattttgtatgctgcaccaataattttctgtttttttcttgctttataattatcttaaaAC-TGGTG-CGGC-TT---AT------ATC--AATAATTTGAAAC--AT-TTTCCACT-T-TTTT-AGGTAATTTCCTTAC----------A------------T--TT------T----T----ACATT-----TATT----CTGT---ATGGCGCACCAACAATTTCCCA-TTTTTT-CT-TG----T-ATAATTATC--TT--AACT-T-CAGACGATGATGGCATTTGTCG-------------CTG---CCACTGTTGC------------------------------------------------AC-----G---------AAAT----------TACA--TATT------TTGTCAAATA-c
gi|13 : atacatagacggcgttcatcC-AC---ACCCAAAAAATT----AA--CT-TTTATCAA-T-ATTT-AGCTTATTTCAAAAC----------T------------C--TT------T----T----ACATT-----TATTATTTTTGT---ATGCCGCACCAACAATTTTCCA-TTTTTTTCT-TG-TTTT-ATAATTATC--TT--AAAC-A-CGGACAATGATGGCATTTGTTAT--T---------
gi|14 : ttgtatatactcattacggaagtagacatagctgcGG-TGCGGCATGGT-GAACCGACAATT---AA-TAT-TGGTA-CGGCATT-------------------------------TT-TTTCTACA-T-TTTTTATCTAATTTCCAAAC----------T------------TC-TT------T----C----ACGCT-----CA-T----GTGT---GCGCCGCACCAATAATTTCCTA-TTTG-T-CT-TG-CCTT-ATGAATATC--TT--TAAT-T-CGGACGATGATGGTATTTG------T---------CTGTCAgatgtttctatttcgaacaaatc
gi|15 : ATGGGCGTAAACATGCA---TGC-GACATGG-TACAACATTACCACACCAATATTTCCGAA-ACT-T--TT-CTACATTTAAGC-G------------AATTGCCAAACTCT-TTTTTACA-T-TTaacctttaaacttaaatgaccgttaatgagat
gi|15 : ac-TGGTA-CAACATT---ACCAC---ACC--AATATTTCCGAAA--CT-TTTCTACA-T-TTA--AGCGAATTGCCAAAC----------TCT----------T--TT------T----T----ACATT-----TAGT----TTGT---AAGCTGCATTGATAATTTCTCA-TTTCTagtttgtaagctgcattgataatttctcatttctacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|15 : acatgggcgtaaacatgcatgcgaca----TCT---------AC-----A---------AAAT----------AACA--AGTT------A-GTAAAATA-TT----TA-GC-----CACA--CCAAAATCAAATTCATGTCAACGCCacaaaataacaagttagtaaaatatttagccacaccaaaatcaaattcatgtcaacgcc
gi|16 : acatgggcgtaaacatgcatgcgacatggtacaacattaccacaccaatatttccgaaacttttctacatttaagcgaattgccaaactcttttttacatttagtttgtaagctgcattgataatttctcattATGGGTGTAGAGATGGG---TGC-GGCATGG-TGCGACAATA----ACCAATGATT---
gi|16 : cAT-GGGTG-CGGCATG---GT-GC---GAC--AATAAC--CAA--------------------------TGATTTCAAAAC----------T------------T--TT------G----T----ACGTA-----TATT----TGGT---ATGCTGCA-CAA------------TTGT--------TTTT-ATAAGCATC--TT--AAAT-T-CAGATGATGATGGCATTTGTCAT--TCCTATAGGACTGCCACCACTGATGC--------TG-CTCATTTTATT---A-AA--G----TCT---------ACTAT--A---------AAAT----------TACA--Atcaaaacttttgtacgtatatttggtatgctgcacaattgtttttataagcatcttaaattcagatgatgatggcatttgtcattcctataggactgccaccactgatgctgctcattttattaaagtctactataaaattacaa
gi|17 : catgggtgtagagATGGGCGTAGACACGAG---TGC-GGCATTG-TGCG--------GCACCAACAATT---
gi|17 : acGTG-CGGCATT---GT-GCGGCACC--AACAATTTCAAAA--CT-CTTCTGCA-T-GTTT-AGTTTATTAGCTAAC----------T------------T--TT------TATTTT----ACGTT-----TATT----TTGT---ATGCCGCACCAATAATTTCCAA-TTT-TC-CT-TG-TTTT-ATAAATATC--TT--AAAT-T-CG---GATGACGGCATTTGTCAtcaaaactcttctgcatgtttagtttattagctaactttttattttacgtttattttgtatgccgcaccaataatttccaattttccttgttttataaatatcttaaattcggatgacggcatttgtca
gi|18 : acatgggcgtagacacgaGCTAATTTC---AT----------T------------T--TT------T----TTTT-ACATT-----TATT----TTGT---ATGCTGCACCAATAATTTCCCATTTTTTT-CT-TG-TTTT-ATTATTATC--TT--AAAA-T-CGGACAATGATGGCACTT
gi|19 : TAATTTCAAAAC----------T------------T--TT------C----T----ACATT-----TTCT----TAGC---AAACTG-ACCAATAATTT-------TTTT-C-------------ATTATC--AT--AAAT-T-CGGACGATGATAGCA-TTGTTGA--T---------TTGT------TGGTGC--------TG-CTCATT---TT---tagaattgatattttattaaaaataaatctgcatcaaatttaaatttgtatctaaaccccagca
gi|2 : ccaaATGGGCGTAGAAACGGG---TGC-GGTATGG-TGCGTCATTGCCGCCCCAATAACT---
gi|2 : tc---TT---A-AA--A----TGT---------AC-----A---------A----------------A--AGTT------TTG-AAGTTA-TTGGGGCG-GCAATGACGCA--CC-ATACCGCACCCGTTTCTACGCCtcaaaacttttgtacattttaagttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|2 : tcatg-TGGTG-CGTCATT---GCCGC---CCC--AATAACTTCAAAA--CT-TTTGTACA-T-TTTA-AGTTGATTTCCAAAA----------G------------T--TGAAAAAAT----A----ACATT-----TATT----TTGT---GTGCCACACAAATAATTCTCCA-TTTGTT-TT-TTCTTTT-ATAATAATT--TT--AAAA-TACGAACGACAATGGCAATAGTCAT--TTCTGTTTGACTGCCACCACTGGTGC--------GA-CTCATT---TT---A-AA--G----TCTGT-------AT-----A---------CAAT----------TACA--AGTT------CTATAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTACGCCgttgatttccaaaagttgaaaaaataacatttattttgtgtgccacacaaataattctccatttgttttttcttttataataattttaaaatacgaacgacaatggcaatagtcatttctgtttgactgccaccactggtgcgactcattttaaagtctgtatacaattacaagttctataaaatatatagccgcaccaatatcaaattcttgtctacgccac
gi|20 : tcatgggcgtagaaacgggtgcggta----T----ACATT-----TATT----TTAT---ATGCCGCACCAATAATTTC-----TTGTT-C-------TT-ATAATTATC--TG--AAAT-T-TGac
gi|20 : T------TTGTAAAATA-TT----TA-GC-----CACA--CCTGTATCAAATTCGTACCTACGCCtaaaatatttagccacacctgtatcaaattcgtacctacgccc
gi|21 : tacatttattttatatgccgcaccaataatttcttgttcttataattatctgaaaTT------TCGTAAATCT-TT----TA-AC--------A--TCAATATCAAATTTGTGTCTACACCc
gi|22 : tgcata------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcatggatgc
gi|23 : G---TGC-GATATGG-TGCGGCATTGTCGCGCCAATTATT---AA-TAT-tcctttggaga
gi|3 : ATGAGCGTAAACATGAG---TGC-AGCATAA-TGTGGCA--GCTGCACCAATAATT---AA-TAT-TGCTG-CGGCA---------C---ACC--G-------CAAAA--CT-T--CTACA-T-TTTTTAGTTAATTTCCAAAA----------T------------A--TT------T----T----ATATT-----TACT----T-GT---ATACCACATCAATAATTTCCCA-TTTTTT-TT-TG-TTTTTCTAATGATC--AT--AAAT-T-CAGACAATGATGGCATTTGTGGTAAT----------TGCCACCACTAGTAC--------TG-CTCATT---TA---C-AA--A----TTT---------AC-----A---------AATT----------TATA--AGTT------TTGTAAAATA-TT----TA-GC-----C-CA--AAAATATCAAATTTGTGTCTACACC
gi|4 : ATGGGCGTAGACAAGGG---TGC-GGCATGG-TG---------CACGTCAATAATC---AG-TAT-TGGGG-CCGCAT------------ACT---ATGATTTCAAAA--CCGTTTCTACA-T-TTTT-AGATAATTTCCAAGT----------TGTTGTTGGGGGGT--TT------T----TTTTGGCATT-----TATT----TTGT---ATGCCACATCAATACTTT-CAA-TTTTTT-CT-TG-TCTT-ATAATTGTC--TT--AAAT-T-CGGGCGATGATGACAcct
gi|4 : tagcACA--AGTT------GTATAAAATA-TT----TA-AC-----CACA--TCAATATCAAGTTCTTATCTACGCCcaagttgtataaaatatttaaccacatcaatatcaagttcttatctacgcccct
gi|5 : tagcatgggcgtagacaagggtgcggcatggtgcacgtcaataatcagtattggggccgcatactatgatttcaaaaccgtttctacatttttagataatttccaagttgttgttggggggttttttttggcatttattttgtatgccacatcaatactttcaattttttcttgtcttataattgtcttaaattcgggcgatgatgacCATGG-TGCGGCATT-----ACCAAT----------TAT-TG-------C-------C-GC---AC---AATCATTTCAAAA--C---------A-T-TT---AGCTAATTTCCAAATG---------T------------T--TT------T----T----ACATTAAATTTATT----TTGT---ATGTCGCAACAATAATTGCCCA-TTTGTT-CT-TG-TTTT-ATACCTATC--TT--ATAT-T-CGGACAATACTGGACTTTGTCAT--T-----------GT------TGAT--------------TCGTT---TTCAAACAA--A----TCA---------AC-----ATTTTAGAATAGAT----------TACA--AGTT------TTGTAAAATA-TT----TA-GC-----CGCA--CCAATATCAAATCCGTGTCTACACcct
gi|6 : ATGGACGAAGACAAGGG---TGC-GGTATGG-TGCGACATTGCCGCACCAGTAATT---TA-TATATGCCGCCAGC-TT---CN-NN---NNN--NNNNNNNNNNNNN--NN-NNNNNNNN-N-NNNN-NNNNNNNNNNNNNNN----------N------------N--NN------N----N----NCA---------------TTGC---ATGCTGCACCAATAATTTCCAA----ACT-CT----TTTT-ACATTTATT--TT--tcc
gi|6 : TAATTTCCAAAC----------TC-----------T--TT------T----T----ACATT-----TATT----TTTT---ATGTCACACCAATAATTTttatgtcacaccaataatttgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|6 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaa----TCT---------AC-----A---------AAAT----------TACC--AG-T------TTGTAAAATATTT----TA-AC-----CGCA--CCAATATCAAATCCGTGCCgatttctacaaaattaccagtttgtaaaatattttaaccgcaccaatatcaaatccgtgcc
gi|7 : atggacgaagacaagggtgcggtatggtgcgacattgccgcaccagtaatttatatatgccgccagcttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattgcatgctgcaccaataatttccaaactctttttacatttattttttatgtcacaccaataatttgattGACATGGG---CGTTGACATGGGTGCAGCATTACTGCAC----AAT----AA-TAT-TGTTG-TGGCATG---CC-GC---ATC--AATAATTTCAAA---CT-TTTCTACA-T-TTTT-AGTTAATTTCCAAAC----------T------------T--TT------T----T----GCATT-----TATT----TT----------GCACCAATAATTTCCCA-TTTATT-CT-TG-TTTT-ATAATTATC--TT--AATT-T-CGAACAA
gi|7 : att-----TATTG---TTGTGGCATGCCGCATCAATAATTTCAAA-CTT-TT-CTACA-TTTT--TAGTTAAT--TTCCAAAC-T--------TTTTTGCATTT---AT--T---------TTG-CACCAATAATTTCCCATTTATT-CTTGTT---TT---ATAATTA----TCTTAATTTCGAAC-----A---------AATC----------AACATTAATTGACTACTTGTAAAATA-TT----TA-GT-----CACA--CCAATATCAAATTCGTGTCCAGGCatcaacattaattgactacttgtaaaatatttagtcacaccaatatcaaattcgtgtccaggctcct
gi|8 : attgacatgggcgttgacatgggtgcagcattactgcacaataaAT-GGATG-CGACATT---GT-GT---ACC--AATAATTTCACAA--AT-TTTCTACA-GATTTT-AGCTAATTTTATAACATTTTTTACAT------------T--TT------T----T----ACATT-----T-TT----TTAT---ATGCCACAACAATAATT-CCAA-TTT-----------TTT-ATAGTTATC--TT--AAAT-T-TGGTCAATAGTCGCATTTCTCAT--T-----------GT------TGAT--------------TCGTT---TT---C-GA--A-----CT---------A------------------AT------------CA--AGAT------TTGTAACATA-TT----GAAGC-----CTCA--CCAATATCGAATTCGAGTCTACGCCtcct
gi|9 : agcgtaggcATGGGCATAGACACGGG---CGT-GGCATcc
gi|9 : cgtatcATAATTTCAAAA--CC-TTTCTA---------------ATTTCAAAAC----------T------------TCGTT------T----T-----TGTTA----TATT----TTTC---ATGCCGCACCAATAATTTCCCA-TTT-TT-CT-TG-TTTT-ATAATTATCTTTT--ATATGC-CGTACGATAATTTCTCTTTTC-T--T---------CT-TC-TTACTA--------------------T---TT---A-TA--A----T-T---------AC-----------------CT----------TA-A--A--T------TTGTAAAATA-TA----TA-GC-----CGCA--CCAATATCAAATTCTTGTCTAaatttcaaaacctttctaatttcaaaacttcgtttttgttatatttttcatgccgcaccaataatttcccatttttcttgttttataattatcttttatatgccgtacgataatttctcttttcttcttcttactatttataattaccttaaatttgtaaaatatatagccgcaccaatatcaaattcttgtcta