lowQualScore : 222222222222 22222222 33333333333333 555555 1111111 1
lowQualScore : 222222222222 6666 88888888 3 333 2 22 55555555555555 7777 333 7777 222222 1 3 7777777 333 1 5
lowQualScore : ............ .... ........ . ... . .. .............. .... ... .... ...... . . ....... ... . .
lowQualScore : 333333333333 1111 11111111 8 777 1 88 00000000000000 4444 000 4444 111111 7 3 7777777 000 1 8
consensus : ACTCAAGAGAT------A-TG-AAAA----CGCAACACAN-NAAG---A-GA--TAT--GA--A-A-----AC----GCA---ACA---CAGGGTT--TAGAGGGGACTTACTTGGAAATG-A-AAAA------A---GTGACACCAATGCAGGAGG
Reference ( gi|4 ) : ACTCAAGAGAT------A-TG-TAAA----CGCAGCCCAT-CAGG---A-GA--TAT--AC--A-C-----AC----GCA---ACA---TAGGGTTAATGGGGGGGACTTACTTGGAAATG-A-AAAG------A---GTGACACCAATCCAAGAGG
gi|5 : ACTCAAGAGAT------A-TG-AAAA----CACA----ATGTAGGTAGA-GA--TAT--GA--A-A-----AT----GCA---ACA---CAAGGTT--TAGACAGGACATACATGAAAATG-A-AAAA------A---AGGACACCAATGCAGGAGG
gi|6 : ACTCAAGGAAT------A-TA-AAAAAAAACGCAGCATAG-GAAG---A-GA--TAT--GA--A-A-----AC----ACA---AAA---CACGGTT--TAGAGTGGATTTACTTGGAAATG-A-CAA-------A---GTGACACCAAt
gi|3 : ACTTAAAAAAT---------G-AAAA----CGCAACACAG-GAAG---A-GA--GCT--GA--A-C-----CC----GCA---ACACTGTGGGGTT--TAGATTGGACTTACATGGAAGTG-A-AACA------A---GTGACACAAATCCAGGAGGggcagg
gi|9 : ATTCAAGAGAT------A-AA-GAAA----TGCAACAAAG-GAAG---A-GG--TAT--GA--A-A-----AT----GCA---A------------AACAGGGGGGATTTACTTGAAAATG-A-GAAA------A---GTGACACCATTGCCGGAGGta
gi|20 : ACTCGAGAGAT------A-TG-AAAA----CGCAt
gi|14 : ACCCAAGAGAT------A-TG-AAAA----CGCGAC--AT-TAGA---A-GAAATGT--GA--A-A-----AC----GCA---A-------------------GGGACTTGCATGGAAATG-A-AAA-------A---GTGACACCAGTCatacaggacttctgaggggactttcttggaattaaaaaaatgacaccaatacaggaga
gi|23 : tacATTCAAGA---------------AAA----CGAAACACAT-GAAA---A-GA--TAT--GG--A-A-----AT----GCA---ACA---CAGGGTT--TAGAGAGGACTTGCTTGGAAATggg
gi|26 : aacACTCAAGAGAT------A-TGAAAAA----CGCAG
gi|7 : cACGCAAGAGAT------G-AG-AAAA----CGCAACGCA--GAAA---A-AA--TAT--GA--A-A-----AC----GGA---ACA---TAGAGTTTA-------GACTTAATTAGAAATGTA-AAAA------A---GTGACAggtttagaggagaattactcgaaaatgaaaaagtgacacca
gi|2 : ACTCATGAGATGAGCCAA-TT-TAAA-----ACAGG------AAG---A-GA--TAA--GA--A-A-----AC----ACA---ACA---CAGAGTT--TAGAATGGACTTAACTGAAAATA-A-AAAA------AAACGTGACAACAATGCAGGAGGtttatgccggagttac
gi|22 : acACTCAAGAGAT------A-TG-AAAA----TACAACACAG-CAAA---A-GA--TAC--TT--A-A-----AC----ACA---ACA---TAGtac
gi|12 : atacCAAGAGAT------A-TG-AAAA----CACAATACAC-TAAG---A-GA--TAT--GA--A-A-----AT----GCA---ACC---TAGAGTTAA--AAGGGGACTTACTTGGAAATG-A-AAAA------A---GTGAAACCtttgtacaagcatatacatg
gi|1 : caCAAGAGAA------AATA-AAAA----CACAACACAC----G---ATGT--TAT--ACGAA-A-----AC----GCA---ACT---CAGGGTT--TAAAGGGGAATTACTTGGAAATA-A-AAAGTGAAAAA---GTTACACCAATGCAGGAGG
gi|8 : acatc-TG-AAAA----AGCAACACAG-CAAA---A-CA--TAT--GA--A-A-----AC----GCATTTACA---T-------------GGAACTTACTTGGAAATC-A-AAAT------A---GTGACACCAATGCATGAGGtg
gi|11 : tacactcaaacttttCAT-AGGA---A-GA--TGTGTAA--A-A-----AC----GCA---CCA---CAGGGCT--TAGATGTGATTTCCTTAGAAATG-A-TAAA------A---GTGATACCAATGCAGGAAGtac
gi|20 : aacatgcaaT-CGAG---A-GA--TAT--GA--A-A-----AC----GCA---ATA---CAGGACTTCTGAGGGG-ACTTTCTTGGAA-TT-A-AAAA------A---ATGACACCAATACAGGAGtac
gi|26 : acT-CAAG---A-GA--TATG-AA--A-A-----AC----GCA-----------GGGTT--TAGAGGAGAATTACTCGAAAATG-A-AAA-------A---GTGACACCAa
gi|21 : cacAAG---A-GA--TAT--GA--A-------ACTGCGGCA---ACA---CAGGGTT--TAGAGGGGAAATACTTGGAAATA-A-AAAT------A---ACGACACCAAAGCAGGAGG
gi|15 : AAG---A-GA--TAT--GG--A-------ACTGCGGCA---ACA---CAGGGTT--TAAAAGGGAAATACTTGGAAAT----AAAA------A---ATAATATCAATGCAAGAGGt
gi|30 : atatgaaatAAG---A-GA--TAT--GA--A-A-----AC----ACA---AAA---CACGGTT--TAGAGTGGATTTACTTGGAAATG-ACAAAG------tac
gi|13 : taggG---A-AA--TAT--AT--A-TGAAAAAC----ACA---ACA---CAAGGTTTA---GAGTGACTCATTTGGAAATG-A-AAAA------A---GTGAAACCAATGCAt
gi|16 : nnnnnnnnnagaaaca--TAT--AA--AGC-----AC----GCA---ATA---CAGTGTTGA--GAGGGAACTTACTTGGTAATG-ACAAAA------A---GTCACACCAATGCAGAAGGgt
gi|28 : acacagaaatgtg-----AC----GCA---GCA---AAGGGTT--TAGAGGGGACTAACTTGGAAAT--A-AAAC------A---GTGACACCAATACTGGAGGta
gi|27 : -----AC----GCA---ACA---CAGAGTT--TACAGGGAACTTACACGGAGATG-A-AAA-------A---ATGGCACCAATCCAGta
gi|29 : atattaa-----AC----GCA---ACA---CCGGGTT--TAGAGGGGAATTTCTTGGAAACG-A-AAA-------C---GTGACACTAATGCA
gi|33 : aGGTT--TAGAGGGGACTTGCTTAAAAATG-A-AAAA------A---GTGAAACCAAAGCAGGAGgtgg
gi|32 : ACTTGGAAATA-A-AAAA------A---GTGAAACCAATGCAGGAGGata
gi|34 : tacagtaaacaaACTTGAAAATG-A-AAAA------A---ATTAAACCAATGCAGGAGtgccaaa
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TGAAAATGCAACATAGCAAAATGTATAAAAAAGCAAATCATGATCTAGAAGAGACTTGTTTGCCAATGTAACAATGGAACCGATGTTGGAGGTACC
Unaligned ( gi|17 ): CTGACGGGATATGAAAACGCAACCACAAGTTTGTAGGACTATATTAGAGAAACTAATTACACATCACTCATAAATGCATGTGAAA
Unaligned ( gi|18 ): TGAAGAGATATGAAAACGCAACACTGGACTTAGAGGTGTATATCTGCGGATTGAAAACAGTGACAGAAATATCAAAGGTGCCA
Unaligned ( gi|19 ): CAAGAGATATGAAAACGCAACACTGGACTTAGAGGTGTATATCTGCGGATTGAAAACAGTGACAGAAATATCAAAGGTGCCA
Unaligned ( gi|24 ): TGACGAGATATGAAAACGCAACAACGGGTTTATAGGGCTATATTAGAGAAACAAATTACACAACACTCAT
Unaligned ( gi|25 ): AAAGATATATGAAAACACAACACAGGGTTTAAAGGGGCCTTGCATTGGATATGAAATAAATGCCACCAA
Unaligned ( gi|31 ): AGATATAACGGGACTAAATCGAGTCAATGTTTAAAAAATGACGCAAATGCAGAAGGTA
Unaligned ( gi|35 ): GTTAAAAGAGGTATTACTTGGTAATAAAAAAATTACACCAATG
Alignments
lowQualScore : 3 6666 22 55 1 2 222 11 1 4 1 2 1 555555 222
lowQualScore : . .... .. .. . . ... .. . . . . . ...... ...
lowQualScore : 3 1111 00 44 4 9 555 88 3 0 3 6 3 222222 444
consensus : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAACAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
Reference ( family-958 ) : ACTCAAGAGATA-TGAAAA----CGCAACACANNAAGAGATATGAAA--A-CG-CAACAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
gi|1 : CAAGAGAAAATAAAAA----CACAACACACGATGTTATACGAAA--A-CG-CAACTC---AGGGTT--TA-AAGGGGAAT-TAC-TTG-GAAATA-AAAAGTGAAAAA---GTTACACCAATGCAGGAGG
gi|11 : acatcAACA----TGCAACATAGGAAGATGTGTAAAA--A-CG-CACCAC---AGGGCT--TA-GATGTGATT-TCC-TTA-GAAATG-A------TAAAA---GTGATACCAATGCAGGAAGtg
gi|12 : CAAGAGATA-TGAAAA----CACAATACACTAAGAGATATGAAA--A-TG-CAACCT---AGAGTT--AA-AAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGAAACCtac
gi|13 : caACAGAAATATATATGAAA--AACA-CAACAC---AAGGTT--TA-GAGTG-ACT-CAT-TTG-GAAATG-A------AAAAA---GTGAAACCAATGCAG
gi|14 : nnnnnnnnnagaaACCCAAGAGATA-TGAAAA----CGCGACATTAGAAGAAATGTGAAA--A-CG-CAA--------------------GGGACT-TGC-ATG-GAAATG--------AAAAA---GTGACACCAGTt
gi|15 : tacAATAAGAGATATGGAACTG-CGGCAACAC---AGGGTT--TA-AAAGGGAAA-TAC-TTG-GAAAT---------AAAAA---ATAATATCAATGCAAGAGGcggg
gi|16 : atatgaACACAGAAATGTGTATAAAGC-A-CG-CAATAC---AGTGTT--GA-GAGGGAACT-TAC-TTG-GTAATG-AC-----AAAAA---GTCACACCAATGCAGAAGGtac
gi|18 : AAGAGATATGAAA--A-CG-CAACAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAta
gi|19 : tgAAGAGATATGAAA--A-CG-CAACAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAgaaatatcaaaggtgcca
gi|2 : cACTCATGAGATG-AGCCAA----TTTAAAACAGGAAGAGATAAGAAA--A-CA-CAACAC---AGAGTT--TA-GAATGGACT-TAA-CTG-AAAATA-A------AAAAAAACGTGACAACAATGCAGGAGGgaaatatcaaaggtgcca
gi|20 : acAGAGATATGAAA--A-CG-CAATAC---AGGACT--TCTGAGGGGACT-TTC-TTG-G-AATT-A------AAAAA---ATGACACCAATACAGGAGtac
gi|21 : actcgAAGAGATATGAAACTG-CGGCAACAC---AGGGTT--TA-GAGGGGAAA-TAC-TTG-GAAATA-A------AAATA---ACGACACCAAAGCAGGAGGa
gi|22 : ACTCAAGAGATA-TGAAAA----TACAACACAGCAAAAGATACTTAA--A-CA-CAACAT---AGt
gi|23 : atacGAAAA----CGAAACACATGAAAAGATATGGAA--A-TG-CAACAC---AGGGTT--TA-GAGAGGACT-TGC-TTG-GAAATtttgtacaagcatatacatg
gi|24 : aacattcaaGAGATATGAAA--A-CG-CAACAA---CGGGTT--TA-TAGGG--CTATA--TTA-GA---G-A------AACAA---ATTACAC
gi|25 : tgacAAGATATATGAAA--A-CA-CAACAC---AGGGTT--TA-AAGGGGCCT-TGCATTG-GATATG-A------AATAA---ATGCCACCAAaacactcat
gi|26 : aCAC-TCAAGAGATATGAAA--A------ACGC---AGGGTT--TA-GAGGAGAAT-TAC-TCG-AAAATG--------AAAAA---GTGACACCA
gi|27 : AA--A-CG-CAACAC---AGAGTT--TA-CAGGGAACT-TAC-ACG-GAGATG-A------AAAAA----TGGCACCAATCCAGG
gi|28 : atatt--A-CG-CAGCAA---AGGGTT--TA-GAGGGGACT-AAC-TTG-GAAAT--A------AAACA---GTGACACCAATACTGGAGG
gi|29 : A--A-CG-CAACAC---CGGGTT--TA-GAGGGGAAT-TTC-TTG-GAAACG--------AAAAC---GTGACACTAATGCAGta
gi|3 : ACTTAAAAAAT---GAAAA----CGCAACACAGGAAGAGAGCTGAAC--C-CG-CAACACTGTGGGGTT--TA-GATTGGACT-TAC-ATG-GAAGTG-A------AACAA---GTGACACAAATCCAGGAGGtgg
gi|30 : AGGAAGAGATATGAAA--A-CA-CAAAAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG-A------CAAAta
gi|32 : tAC-TTG-GAAATA-A------AAAAA---GTGAAACCAATGCAGGAGGgt
gi|33 : tacagtaaacaaGGTT--TA-GAGGGGACT-TGC-TTA-AAAATG-A------AAAAA---GTGAAACCAAAGCAGGAGtgccaaa
gi|34 : GGGTT--TA-GTCGGGACT-T-----G-AAAATG-A------AAAAA---ATTAAACCAATGCAGGAGata
gi|35 : GTT--AA-AAGAGGTAT-TAC-TTG-GTAAT--A------AAAAA---ATTACACCAATGatact
gi|4 : ACTCAAGAGATA-TGTAAA----CGCAGCCCATCAGGAGATATACAC--A-CG-CAACAT---AGGGTTAATG-GGGGGGACT-TAC-TTG-GAAATG-A------AAAGA---GTGACACCAATCCAAGAGG
gi|5 : ACTCAAGAGATA-TGAAAA----CACAATGTAGGTAGAGATATGAAA--A-TG-CAACAC---AAGGTT--TA-GACAGGACA-TAC-ATG-AAAATG-A------AAAAA---AGGACACCAATGCAGGAGG
gi|6 : ACTCAAGGAATA-TAAAAAAAAACGCAGCATAGGAAGAGATATGAAA--A-CA-CAAAAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG--------ACAAA---GTGACACCAAGGCAGGt
gi|7 : ACGCAAGAGATG-AGAAAA----CGCAACGCAGAAAAA-ATATGAAA--A-CG-GAACAT---AGAGTT--TA------GACT-TAA-TTA-GAAATGTA------AAAAA---GTGACATTTATGCCGGAG
gi|8 : -TGAAAA----AGCAACACAGCAAAACATATGAAA--A-CG-CA-----------TT--TA-CATGGAACT-TAC-TTG-GAAATC-A------AAATA---GTGACACCAATGCATGAGGttac
gi|9 : tacactcaaacttttATTCAAGAGATA-AAGAAA----TGCAACAAAGGAAGAGGTATGAAA--A-TG-CAAAAC---AGGG----------GGGATT-TAC-TTG-AAAATG-A------GAAAA---GTGACACCATTGCCGGAGGtac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGAAAATGCAACATAGCAAAATGTATAAAAAAGCAAATCATGATCTAGAAGAGACTTGTTTGCCAATGTAACAATGGAACCGATGTTGGAGGTACC
Unaligned ( gi|17 ): CTGACGGGATATGAAAACGCAACCACAAGTTTGTAGGACTATATTAGAGAAACTAATTACACATCACTCATAAATGCATGTGAAA
Unaligned ( gi|31 ): AGATATAACGGGACTAAATCGAGTCAATGTTTAAAAAATGACGCAAATGCAGAAGGTA
Alignments
lowQualScore : 3 6666 55 1 2 1 222 11 1 5 1 2 1 555555 222
lowQualScore : . .... .. . . . ... .. . . . . . ...... ...
lowQualScore : 3 1111 22 4 8 4 444 88 3 2 2 5 3 000000 333
consensus : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
Reference ( family-958 ) : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
gi|1 : CAAGAGAAAATAAAAA----CACAACACACGATGTTATACGAAA--A-CG-CAA-CTC---AGGGTT--TA-AAGGGGAAT-TAC-TTG-GAAATA-AAAAGTGAAAAA---GTTACACCAATGCAGGAGG
gi|11 : acatcAACA----TGCAACATAGGAAGATGTGTAAAA--A-CG-CAC-CAC---AGGGCT--TA-GATGTGATT-TCC-TTA-GAAATG-A------TAAAA---GTGATACCAATGCAGGAAGtg
gi|12 : CAAGAGATA-TGAAAA----CACAATACACTAAGAGATATGAAA--A-TG-CAA-CCT---AGAGTT--AA-AAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGAAACCtac
gi|13 : caACAGAAATATATATGAAA--AACA-CAA-CAC---AAGGTT--TA-GAGTG-ACT-CAT-TTG-GAAATG-A------AAAAA---GTGAAACCAATGCAG
gi|14 : nnnnnnnnnagaaACCCAAGAGATA-TGAAAA----CGCGACATTAGAAGAAATGTGAAA--A-CG-CAA---------------------GGGACT-TGC-ATG-GAAATG--------AAAAA---GTGACACCAGTt
gi|15 : tacAAGAGATATGGAACTG-CGGCAA-CAC---AGGGTT--TA-AAAGGGAAA-TAC-TTG-GAAAT---------AAAAA---ATAATATCAATGCAAGAGGcggg
gi|16 : atatgaaatACACAGAAATGTGTATAAAGC-A-CG-CAA-TAC---AGTGTT--GA-GAGGGAACT-TAC-TTG-GTAATG-AC-----AAAAA---GTCACACCAATGCAGAAGGtac
gi|17 : GACGGGATATGAAA--A-CG-CAACCAC---A-AGTT--TG-TA--GGACTATA--TTA-GA---G-A------AACTA---ATTACACta
gi|18 : ctGAAGAGATATGAAA--A-CG-CAA-CAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAatcactcataaatgcatgtgaaa
gi|19 : tAAGAGATATGAAA--A-CG-CAA-CAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAgaaatatcaaaggtgcca
gi|2 : cACTCATGAGATG-AGCCAA----TTTAAAACAGGAAGAGATAAGAAA--A-CA-CAA-CAC---AGAGTT--TA-GAATGGACT-TAA-CTG-AAAATA-A------AAAAAAACGTGACAACAATGCAGGAGGgaaatatcaaaggtgcca
gi|20 : acAGAGATATGAAA--A-CG-CAA-TAC---AGGACT--TCTGAGGGGACT-TTC-TTG-G-AATT-A------AAAAA---ATGACACCAATACAGGAGtac
gi|21 : actcgAAGAGATATGAAACTG-CGGCAA-CAC---AGGGTT--TA-GAGGGGAAA-TAC-TTG-GAAATA-A------AAATA---ACGACACCAAAGCAGGAGGa
gi|22 : ACTCAAGAGATA-TGAAAA----TACAACACAGCAAAAGATACTTAA--A-CA-CAA-CAT---AGt
gi|23 : atacGAAAA----CGAAACACATGAAAAGATATGGAA--A-TG-CAA-CAC---AGGGTT--TA-GAGAGGACT-TGC-TTG-GAAATtttgtacaagcatatacatg
gi|24 : aacattcaaGACGAGATATGAAA--A-CG-CAA-CAA---CGGGTT--TA-TAGGG--CTATA--TTA-GA---G-A------AACAA---ATTACAC
gi|25 : tAAGATATATGAAA--A-CA-CAA-CAC---AGGGTT--TA-AAGGGGCCT-TGCATTG-GATATG-A------AATAA---ATGCCACCAAaacactcat
gi|26 : aAAGAGATATGAAA--A------A-CGC---AGGGTT--TA-GAGGAGAAT-TAC-TCG-AAAATG--------AAAAA---GTGACACCA
gi|27 : cactcAA--A-CG-CAA-CAC---AGAGTT--TA-CAGGGAACT-TAC-ACG-GAGATG-A------AAAAA----TGGCACCAATCCAGG
gi|28 : atatt--A-CG-CAG-CAA---AGGGTT--TA-GAGGGGACT-AAC-TTG-GAAAT--A------AAACA---GTGACACCAATACTGGAGG
gi|29 : A--A-CG-CAA-CAC---CGGGTT--TA-GAGGGGAAT-TTC-TTG-GAAACG--------AAAAC---GTGACACTAATGCAGta
gi|3 : ACTTAAAAAAT---GAAAA----CGCAACACAGGAAGAGAGCTGAAC--C-CG-CAA-CACTGTGGGGTT--TA-GATTGGACT-TAC-ATG-GAAGTG-A------AACAA---GTGACACAAATCCAGGAGGtgg
gi|30 : AGGAAGAGATATGAAA--A-CA-CAA-AAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG-A------CAAAta
gi|32 : tAC-TTG-GAAATA-A------AAAAA---GTGAAACCAATGCAGGAGGgt
gi|33 : tacagtaaacaaGGTT--TA-GAGGGGACT-TGC-TTA-AAAATG-A------AAAAA---GTGAAACCAAAGCAGGAGtgccaaa
gi|34 : GGGTT--TA-GTCGGGACT-T-----G-AAAATG-A------AAAAA---ATTAAACCAATGCAGGAGata
gi|35 : GTT--AA-AAGAGGTAT-TAC-TTG-GTAAT--A------AAAAA---ATTACACCAATGatact
gi|4 : ACTCAAGAGATA-TGTAAA----CGCAGCCCATCAGGAGATATACAC--A-CG-CAA-CAT---AGGGTTAATG-GGGGGGACT-TAC-TTG-GAAATG-A------AAAGA---GTGACACCAATCCAAGAGG
gi|5 : ACTCAAGAGATA-TGAAAA----CACAATGTAGGTAGAGATATGAAA--A-TG-CAA-CAC---AAGGTT--TA-GACAGGACA-TAC-ATG-AAAATG-A------AAAAA---AGGACACCAATGCAGGAGG
gi|6 : ACTCAAGGAATA-TAAAAAAAAACGCAGCATAGGAAGAGATATGAAA--A-CA-CAA-AAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG--------ACAAA---GTGACACCAAGGCAGGt
gi|7 : ACGCAAGAGATG-AGAAAA----CGCAACGCAGAAAAA-ATATGAAA--A-CG-GAA-CAT---AGAGTT--TA------GACT-TAA-TTA-GAAATGTA------AAAAA---GTGACATTTATGCCGGAG
gi|8 : -TGAAAA----AGCAACACAGCAAAACATATGAAA--A-CG-CA------------TT--TA-CATGGAACT-TAC-TTG-GAAATC-A------AAATA---GTGACACCAATGCATGAGGttac
gi|9 : tacactcaaacttttATTCAAGAGATA-AAGAAA----TGCAACAAAGGAAGAGGTATGAAA--A-TG-CAA-AAC---AGG----------GGGGATT-TAC-TTG-AAAATG-A------GAAAA---GTGACACCATTGCCGGAGGtac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGAAAATGCAACATAGCAAAATGTATAAAAAAGCAAATCATGATCTAGAAGAGACTTGTTTGCCAATGTAACAATGGAACCGATGTTGGAGGTACC
Unaligned ( gi|31 ): AGATATAACGGGACTAAATCGAGTCAATGTTTAAAAAATGACGCAAATGCAGAAGGTA
Alignments
lowQualScore : 3 6666 55 1 2 1 222 11 1 5 1 2 1 555555 222
lowQualScore : . .... .. . . . ... .. . . . . . ...... ...
lowQualScore : 3 1111 22 4 8 4 444 88 3 2 2 5 3 000000 333
consensus : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
Reference ( family-958 ) : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
gi|1 : CAAGAGAAAATAAAAA----CACAACACACGATGTTATACGAAA--A-CG-CAA-CTC---AGGGTT--TA-AAGGGGAAT-TAC-TTG-GAAATA-AAAAGTGAAAAA---GTTACACCAATGCAGGAGG
gi|11 : acatcAACA----TGCAACATAGGAAGATGTGTAAAA--A-CG-CAC-CAC---AGGGCT--TA-GATGTGATT-TCC-TTA-GAAATG-A------TAAAA---GTGATACCAATGCAGGAAGtg
gi|12 : CAAGAGATA-TGAAAA----CACAATACACTAAGAGATATGAAA--A-TG-CAA-CCT---AGAGTT--AA-AAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGAAACCtac
gi|13 : caACAGAAATATATATGAAA--AACA-CAA-CAC---AAGGTT--TA-GAGTG-ACT-CAT-TTG-GAAATG-A------AAAAA---GTGAAACCAATGCAG
gi|14 : nnnnnnnnnagaaACCCAAGAGATA-TGAAAA----CGCGACATTAGAAGAAATGTGAAA--A-CG-CAA---------------------GGGACT-TGC-ATG-GAAATG--------AAAAA---GTGACACCAGTt
gi|15 : tacAAGAGATATGGAACTG-CGGCAA-CAC---AGGGTT--TA-AAAGGGAAA-TAC-TTG-GAAAT---------AAAAA---ATAATATCAATGCAAGAGGcggg
gi|16 : atatgaaatACACAGAAATGTGTATAAAGC-A-CG-CAA-TAC---AGTGTT--GA-GAGGGAACT-TAC-TTG-GTAATG-AC-----AAAAA---GTCACACCAATGCAGAAGGtac
gi|17 : GACGGGATATGAAA--A-CG-CAACCAC---A-AGTT--TG-TA--GGACTATA--TTA-GA---G-A------AACTA---ATTACACta
gi|18 : ctGAAGAGATATGAAA--A-CG-CAA-CAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAatcactcataaatgcatgtgaaa
gi|19 : tAAGAGATATGAAA--A-CG-CAA-CAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAgaaatatcaaaggtgcca
gi|2 : cACTCATGAGATG-AGCCAA----TTTAAAACAGGAAGAGATAAGAAA--A-CA-CAA-CAC---AGAGTT--TA-GAATGGACT-TAA-CTG-AAAATA-A------AAAAAAACGTGACAACAATGCAGGAGGgaaatatcaaaggtgcca
gi|20 : acAGAGATATGAAA--A-CG-CAA-TAC---AGGACT--TCTGAGGGGACT-TTC-TTG-G-AATT-A------AAAAA---ATGACACCAATACAGGAGtac
gi|21 : actcgAAGAGATATGAAACTG-CGGCAA-CAC---AGGGTT--TA-GAGGGGAAA-TAC-TTG-GAAATA-A------AAATA---ACGACACCAAAGCAGGAGGa
gi|22 : ACTCAAGAGATA-TGAAAA----TACAACACAGCAAAAGATACTTAA--A-CA-CAA-CAT---AGt
gi|23 : atacGAAAA----CGAAACACATGAAAAGATATGGAA--A-TG-CAA-CAC---AGGGTT--TA-GAGAGGACT-TGC-TTG-GAAATtttgtacaagcatatacatg
gi|24 : aacattcaaGACGAGATATGAAA--A-CG-CAA-CAA---CGGGTT--TA-TAGGG--CTATA--TTA-GA---G-A------AACAA---ATTACAC
gi|25 : tAAGATATATGAAA--A-CA-CAA-CAC---AGGGTT--TA-AAGGGGCCT-TGCATTG-GATATG-A------AATAA---ATGCCACCAAaacactcat
gi|26 : aAAGAGATATGAAA--A------A-CGC---AGGGTT--TA-GAGGAGAAT-TAC-TCG-AAAATG--------AAAAA---GTGACACCA
gi|27 : cactcAA--A-CG-CAA-CAC---AGAGTT--TA-CAGGGAACT-TAC-ACG-GAGATG-A------AAAAA----TGGCACCAATCCAGG
gi|28 : atatt--A-CG-CAG-CAA---AGGGTT--TA-GAGGGGACT-AAC-TTG-GAAAT--A------AAACA---GTGACACCAATACTGGAGG
gi|29 : A--A-CG-CAA-CAC---CGGGTT--TA-GAGGGGAAT-TTC-TTG-GAAACG--------AAAAC---GTGACACTAATGCAGta
gi|3 : ACTTAAAAAAT---GAAAA----CGCAACACAGGAAGAGAGCTGAAC--C-CG-CAA-CACTGTGGGGTT--TA-GATTGGACT-TAC-ATG-GAAGTG-A------AACAA---GTGACACAAATCCAGGAGGtgg
gi|30 : AGGAAGAGATATGAAA--A-CA-CAA-AAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG-A------CAAAta
gi|32 : tAC-TTG-GAAATA-A------AAAAA---GTGAAACCAATGCAGGAGGgt
gi|33 : tacagtaaacaaGGTT--TA-GAGGGGACT-TGC-TTA-AAAATG-A------AAAAA---GTGAAACCAAAGCAGGAGtgccaaa
gi|34 : GGGTT--TA-GTCGGGACT-T-----G-AAAATG-A------AAAAA---ATTAAACCAATGCAGGAGata
gi|35 : GTT--AA-AAGAGGTAT-TAC-TTG-GTAAT--A------AAAAA---ATTACACCAATGatact
gi|4 : ACTCAAGAGATA-TGTAAA----CGCAGCCCATCAGGAGATATACAC--A-CG-CAA-CAT---AGGGTTAATG-GGGGGGACT-TAC-TTG-GAAATG-A------AAAGA---GTGACACCAATCCAAGAGG
gi|5 : ACTCAAGAGATA-TGAAAA----CACAATGTAGGTAGAGATATGAAA--A-TG-CAA-CAC---AAGGTT--TA-GACAGGACA-TAC-ATG-AAAATG-A------AAAAA---AGGACACCAATGCAGGAGG
gi|6 : ACTCAAGGAATA-TAAAAAAAAACGCAGCATAGGAAGAGATATGAAA--A-CA-CAA-AAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG--------ACAAA---GTGACACCAAGGCAGGt
gi|7 : ACGCAAGAGATG-AGAAAA----CGCAACGCAGAAAAA-ATATGAAA--A-CG-GAA-CAT---AGAGTT--TA------GACT-TAA-TTA-GAAATGTA------AAAAA---GTGACATTTATGCCGGAG
gi|8 : -TGAAAA----AGCAACACAGCAAAACATATGAAA--A-CG-CA------------TT--TA-CATGGAACT-TAC-TTG-GAAATC-A------AAATA---GTGACACCAATGCATGAGGttac
gi|9 : tacactcaaacttttATTCAAGAGATA-AAGAAA----TGCAACAAAGGAAGAGGTATGAAA--A-TG-CAA-AAC---AGG----------GGGGATT-TAC-TTG-AAAATG-A------GAAAA---GTGACACCATTGCCGGAGGtac
blockSeqs : . AAAA CT A G C TGT AA T A A C T C AAC
blockSeqs : . . CT . G . . . . A . C . . .
blockSeqs : . . C . . . . . . A . . . . .
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blockSeqCons : ******
originalCons : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
finalCons : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGAAAATGCAACATAGCAAAATGTATAAAAAAGCAAATCATGATCTAGAAGAGACTTGTTTGCCAATGTAACAATGGAACCGATGTTGGAGGTACC
Unaligned ( gi|31 ): AGATATAACGGGACTAAATCGAGTCAATGTTTAAAAAATGACGCAAATGCAGAAGGTA
Alignments
lowQualScore : 3 6666 55 1 2 1 222 11 1 5 1 2 1 555555 222
lowQualScore : . .... .. . . . ... .. . . . . . ...... ...
lowQualScore : 3 1111 22 4 8 4 444 88 3 2 2 5 3 000000 333
consensus : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
Reference ( family-958 ) : ACTCAAGAGATA-TGAAAA----CGCAACACAGGAAGAGATATGAAA--A-CG-CAA-CAC---AGGGTT--TA-GAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGACACCAATGCAGGAGG
gi|1 : CAAGAGAAAATAAAAA----CACAACACACGATGTTATACGAAA--A-CG-CAA-CTC---AGGGTT--TA-AAGGGGAAT-TAC-TTG-GAAATA-AAAAGTGAAAAA---GTTACACCAATGCAGGAGG
gi|11 : acatcAACA----TGCAACATAGGAAGATGTGTAAAA--A-CG-CAC-CAC---AGGGCT--TA-GATGTGATT-TCC-TTA-GAAATG-A------TAAAA---GTGATACCAATGCAGGAAGtg
gi|12 : CAAGAGATA-TGAAAA----CACAATACACTAAGAGATATGAAA--A-TG-CAA-CCT---AGAGTT--AA-AAGGGGACT-TAC-TTG-GAAATG-A------AAAAA---GTGAAACCtac
gi|13 : caACAGAAATATATATGAAA--AACA-CAA-CAC---AAGGTT--TA-GAGTG-ACT-CAT-TTG-GAAATG-A------AAAAA---GTGAAACCAATGCAG
gi|14 : nnnnnnnnnagaaACCCAAGAGATA-TGAAAA----CGCGACATTAGAAGAAATGTGAAA--A-CG-CAA---------------------GGGACT-TGC-ATG-GAAATG--------AAAAA---GTGACACCAGTt
gi|15 : tacAAGAGATATGGAACTG-CGGCAA-CAC---AGGGTT--TA-AAAGGGAAA-TAC-TTG-GAAAT---------AAAAA---ATAATATCAATGCAAGAGGcggg
gi|16 : atatgaaatACACAGAAATGTGTATAAAGC-A-CG-CAA-TAC---AGTGTT--GA-GAGGGAACT-TAC-TTG-GTAATG-AC-----AAAAA---GTCACACCAATGCAGAAGGtac
gi|17 : GACGGGATATGAAA--A-CG-CAACCAC---A-AGTT--TG-TA--GGACTATA--TTA-GA---G-A------AACTA---ATTACACta
gi|18 : ctGAAGAGATATGAAA--A-CG-CAA-CAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAatcactcataaatgcatgtgaaa
gi|19 : tAAGAGATATGAAA--A-CG-CAA-CAC---TGGACT--TA-GAGGTG--TATAT-CTGCGGATTG-A------AAACA---GTGACAgaaatatcaaaggtgcca
gi|2 : cACTCATGAGATG-AGCCAA----TTTAAAACAGGAAGAGATAAGAAA--A-CA-CAA-CAC---AGAGTT--TA-GAATGGACT-TAA-CTG-AAAATA-A------AAAAAAACGTGACAACAATGCAGGAGGgaaatatcaaaggtgcca
gi|20 : acAGAGATATGAAA--A-CG-CAA-TAC---AGGACT--TCTGAGGGGACT-TTC-TTG-G-AATT-A------AAAAA---ATGACACCAATACAGGAGtac
gi|21 : actcgAAGAGATATGAAACTG-CGGCAA-CAC---AGGGTT--TA-GAGGGGAAA-TAC-TTG-GAAATA-A------AAATA---ACGACACCAAAGCAGGAGGa
gi|22 : ACTCAAGAGATA-TGAAAA----TACAACACAGCAAAAGATACTTAA--A-CA-CAA-CAT---AGt
gi|23 : atacGAAAA----CGAAACACATGAAAAGATATGGAA--A-TG-CAA-CAC---AGGGTT--TA-GAGAGGACT-TGC-TTG-GAAATtttgtacaagcatatacatg
gi|24 : aacattcaaGACGAGATATGAAA--A-CG-CAA-CAA---CGGGTT--TA-TAGGG--CTATA--TTA-GA---G-A------AACAA---ATTACAC
gi|25 : tAAGATATATGAAA--A-CA-CAA-CAC---AGGGTT--TA-AAGGGGCCT-TGCATTG-GATATG-A------AATAA---ATGCCACCAAaacactcat
gi|26 : aAAGAGATATGAAA--A------A-CGC---AGGGTT--TA-GAGGAGAAT-TAC-TCG-AAAATG--------AAAAA---GTGACACCA
gi|27 : cactcAA--A-CG-CAA-CAC---AGAGTT--TA-CAGGGAACT-TAC-ACG-GAGATG-A------AAAAA----TGGCACCAATCCAGG
gi|28 : atatt--A-CG-CAG-CAA---AGGGTT--TA-GAGGGGACT-AAC-TTG-GAAAT--A------AAACA---GTGACACCAATACTGGAGG
gi|29 : A--A-CG-CAA-CAC---CGGGTT--TA-GAGGGGAAT-TTC-TTG-GAAACG--------AAAAC---GTGACACTAATGCAGta
gi|3 : ACTTAAAAAAT---GAAAA----CGCAACACAGGAAGAGAGCTGAAC--C-CG-CAA-CACTGTGGGGTT--TA-GATTGGACT-TAC-ATG-GAAGTG-A------AACAA---GTGACACAAATCCAGGAGGtgg
gi|30 : AGGAAGAGATATGAAA--A-CA-CAA-AAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG-A------CAAAta
gi|32 : tAC-TTG-GAAATA-A------AAAAA---GTGAAACCAATGCAGGAGGgt
gi|33 : tacagtaaacaaGGTT--TA-GAGGGGACT-TGC-TTA-AAAATG-A------AAAAA---GTGAAACCAAAGCAGGAGtgccaaa
gi|34 : GGGTT--TA-GTCGGGACT-T-----G-AAAATG-A------AAAAA---ATTAAACCAATGCAGGAGata
gi|35 : GTT--AA-AAGAGGTAT-TAC-TTG-GTAAT--A------AAAAA---ATTACACCAATGatact
gi|4 : ACTCAAGAGATA-TGTAAA----CGCAGCCCATCAGGAGATATACAC--A-CG-CAA-CAT---AGGGTTAATG-GGGGGGACT-TAC-TTG-GAAATG-A------AAAGA---GTGACACCAATCCAAGAGG
gi|5 : ACTCAAGAGATA-TGAAAA----CACAATGTAGGTAGAGATATGAAA--A-TG-CAA-CAC---AAGGTT--TA-GACAGGACA-TAC-ATG-AAAATG-A------AAAAA---AGGACACCAATGCAGGAGG
gi|6 : ACTCAAGGAATA-TAAAAAAAAACGCAGCATAGGAAGAGATATGAAA--A-CA-CAA-AAC---ACGGTT--TA-GAGTGGATT-TAC-TTG-GAAATG--------ACAAA---GTGACACCAAGGCAGGt
gi|7 : ACGCAAGAGATG-AGAAAA----CGCAACGCAGAAAAA-ATATGAAA--A-CG-GAA-CAT---AGAGTT--TA------GACT-TAA-TTA-GAAATGTA------AAAAA---GTGACATTTATGCCGGAG
gi|8 : -TGAAAA----AGCAACACAGCAAAACATATGAAA--A-CG-CA------------TT--TA-CATGGAACT-TAC-TTG-GAAATC-A------AAATA---GTGACACCAATGCATGAGGttac
gi|9 : tacactcaaacttttATTCAAGAGATA-AAGAAA----TGCAACAAAGGAAGAGGTATGAAA--A-TG-CAA-AAC---AGG----------GGGGATT-TAC-TTG-AAAATG-A------GAAAA---GTGACACCATTGCCGGAGGtac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGAAAATGCAACATAGCAAAATGTATAAAAAAGCAAATCATGATCTAGAAGAGACTTGTTTGCCAATGTAACAATGGAACCGATGTTGGAGGTACC
Unaligned ( gi|31 ): AGATATAACGGGACTAAATCGAGTCAATGTTTAAAAAATGACGCAAATGCAGAAGGTA