lowQualScore : 11 222222222 22222222 111111111111
lowQualScore : 222 44 22 33333 2 1 1 8 33333 22 000000000 55555555 22 55 11111111 22 555 111111111111 1 1 22 1 66666666 4444 22 4
lowQualScore : ... .. .. ..... . . . . ..... .. ......... ........ .. .. ........ .. ... ............ . . .. . ........ .... .. .
lowQualScore : 888 99 11 77777 9 4 4 5 66666 00 444444444 22222222 00 33 99999999 22 222 666666666666 8 8 55 3 99999999 0000 66 8
consensus : TATTTTATGCATTTACAT---ANATTTTT--GTTTATTTTGACCTCAA-----TTCGCCATTAGATAT-T-ATTGGAT-----TAAT--AAAAAA-AATT-AAAG--------T--AC-TTTTT-T-----TT--TTTAA---AT-A----T-T---TT-T-T--TTTAAATT--------AAT----ATG--CAAGGACA
Reference ( gi|8 ) : TATTTTATGCATTTACAT---ACATTTTT--GTTTATTTTGACCTCAA-----TTCACCATTAGATAT-T-ATTGAAT-----TAAT--AAAAAA-AATT-AAAG--------T--AT-TTTTT-T----ATT--TTTAA---AT-A----T-T---TT-T-T--TTTAAATT--------AAT----ATG--CAAGAACA
gi|6 : TATTTTATGCATTTACAT---AAATTTTT--GTTTAGTTTGATTTTAA-----TTTGCCGTTAGATAT-T-ATTGGAT-----TAAT--AAAAAA-AATTAAAAG--------T--AC-TTTTT-------TT--TTTAA---AT-AAC--A-T---TT-T-T--ATTAAAAT--------AAT----ATT--CAAGGAC
gi|12 : tTAATTTATACTTTTTCAT---AT-TTTTG--GTTTATGTTTACCTTAA-----TTCACCATTAGATAT-T-ATTGGAT-----TAAT---AAAAA-AATT-AAAG--------T--A------C-T----ATT--TTAAA---AT-A----T-T---TT-T-T--TTTGGATT---------AT----GTG--TAAGGAC
gi|27 : TATTTCATGCATTTATAG---A-ATTTTTTTGTCTATTTTGACTTCAA-----TTCGCCATAAGATAT-T-ATTTGAT-----AAAT--AAAAAA-AATT-AAAG--------T--AC-TTTTT-
gi|1 : tTATTTAATGCATTTGCAT---A-ATGTAT--GTTTATTTTTACCTCAA-----TTCACCCTAAGATAT-T-ATTGGAT-----TAAT--AAAAAA-CAAT-AAAA--------C--GT-TCTTT-T----TTT--TTTAAATTAT-A----T-T---TT-T-TTCTTTAAATC--------TAT----ATT--CAAgt
gi|9 : TATTTTATGCATCTATAT------TATTT--GTTTATTTTTACCTCAA-----TTCGCCATTTGATAT-TAATTG-AT-----TAAT--AAAATA-TATC-ATAG--------T--A---TTTT-T----ATT--TTAAA---AT-AT---T-T---TT-T-T--TTTAAAAC--------AAT----AAGGACAAAAtgtataaggacaaaaa
gi|2 : tTATTTTATGCATTAACAT---AATTTTTT--GTTTAGTTTTACCTCAGTTCGCTTCGCCATGAGATAG-T-ATTGGAT-----TAA---AAAAAA----T-AAAA--------T--AT-TTT---------TT--TTTAA---AT-A----T-C---TTAT-T--TTTAAATTTTAAATAAAAT----A-G--CAAGGAC
gi|17 : TATTTTATTCATTTACAT---AAATATTG--GTTTGTTTTGACCTCAT-----TTCGACATTAGATAT-T-ATTGGAC-----TCAT--A---------C-AACG--------T--AC-TTTT--------TT--TTTAA---AT-A----T-T---TT-T-T--
gi|4 : ATTTTATCCATTTACAT---AATTTTTT--GTTTATTTTGACCTCAG-----CTCGCCATTAGATAG-T-ATAGCTT-----TGATAAAAAAAA-AAAT-AAAG--------TTCAT-TTTT--------TT--TTTAA---AT-A----T-T---TT-T-T--TTAAAATT--------AAT----GTG--CAAGGACAaacgacaaaaaaat
gi|22 : ATTTTATGCATTTACAT---AAATTTTT--GTTCATTTTGACCTCAT-----TTCGACATTAGA----T-ATTGGAC-----TAAT--AAAAAA-AATT-AAAG--------T--AC-TTTTT-TTAAAA------TAA---AT-A----T-T---aaa
gi|15 : ATTTTATGCATTAACGTTAAAC-TTTTT--GTCTATTTTTACCTCAA-----TTCGCCATTAGATAT-T-ATTGGAT-----TAAT--ACAAAA-AA-C-AAAG--------T--A------C-C----ATT--TTTA-----------------------------AAATT--------AAT----TTG--CAAGGACAcaaagaa
gi|19 : ATTTTATGCATTTACAT---ACATTTTT--GTTTATTTTGAACTTAA-----TTTGCCACTAGATAG-T-ATTG--T-----T--------------------G--------T--GT-TTT---------TT--TTTAA---ATAA----TAT---TT-A-T--TTTAAATT--------GAT----ATT--CAAGGaa
gi|29 : ATTTTATGCATTTAAAT---A-ATTTTT--TGTTAGTTTGACCTCTA-----CTCGCCATTAGA-ATAT-ATTTGAT-----TAAT--AAAATT-GATA-AAAG--------T--GC-CTTTT-aa
gi|14 : TTTTATGCATTTACAT---ACATTTTT--GTTTATTTTGACCTCAA-----TTCGCCATTAAATAT-T-ACTGAAT-----TAAT--AATAAA-A----AAAG--------T--A---------------C--TTTAA---AT-A----T-T---TT-TAT--TTTAAATT--------AAT----ATG--CAAGGACA
gi|13 : TTTTATGCATTTACAT---ACATTTTT--GGTTATTTTGACCTCAA------TCGCCATTAAATAT-T-ATTGGAT-----TAAT--AAAAAA-A--T-AAAG--------T--AC-TTTTT-T-----TT--TTTA-------A----T-C---TT-T-T--TTTAAACT--------TAT----ATG--CAAGCACcaa
gi|3 : TTTTATGTATTTACAT---ACATTTTT--GTTTCTTTTGACCTTAA-----TTCCCCATTAGA----T-ATTGGAT-----TAAT--AAAAAA-AAT---AAG--------T--AC-TTTTT-T----TTTTATTTAA---ATAA----T-TTAATT-T-T--TTTAAATT--------GAT----ATG--CAAGGACA
gi|10 : TTTGATGCATTTACAT---AAATTTG---GTTTATTTTGACCTCAA-----TTCGCCATTAGATAT-T-ATTGGAT-----TTAT--AAAAAA-AATC--AAG--------T--AC-TTTT--------TT--TCAAA---AT-C----T-G---TT-T-T--TTCAAATT--------AAT----ATT--CAaaac
gi|11 : TTTTATGCATTGACAT---ACATTTTT--GTTTATTTTGACCTCAG-----TGCTCCATTTGTCAT-T-ATTGGAT-----TAA---AAGAAG-TACT-------------T--CT-CTTCT-T----TTT--TTTAA---AT-T----T-T---TT-T-T--TTAAAATT--------AAT----ATG--CAAGGACAttgacaaa
gi|24 : TTTTATACATTTACAT---AATTTTTT--ATTTATTTTGACCTCAA-----TTCGCCATTAGATAT-T-ATTGGAT-----TAAT--A--------------------------AT-TTTTT--------------------------------------T--TTTAAATT--------AAT----ATG--CAAGGACAa
gi|5 : TTTTTTGCATTAACAT---A-ATTTT---GTTTATTTTGACCTCAA-----TTCAGC-TTAGATAT-T-ATTGGATGACCGTAAT--AAAAAA------AAGA--------T--ATCTTTTT-T----TTT--TTTAA---ATGA----T-T---TC-T-T--TTAAAATT--------GAT----TTG--CAAGGACAaa
gi|21 : TTTTATGCATTTAAAT---ATCTTTTT--GTTTATTTTGACCTAAA-----TTCGTCATTAGA----T-ATTGGAT-----TAAT--AAAAAACAATT-AAAT--------T--CT-TTTTTAT----ATT--aaa
gi|28 : TTTTATGCATTAACAT---AAAGTTTT--GTTTATTTTGACCTTAA-----TTCAACATAAGATAT-T-ATTGGAC-----AAAT--AAACAA-AATT-GATT--------C--AT-TTTTT-T----Aaataagcaaggaccaaa
gi|7 : TTTATGAATT-ACAT---AAATGTTT--GTTTATTTTGACCTCAA-----TTCGCCATTAAATAT-T-ATTGGAT-----TAAT---AACAA-AATT-GAAG--------C--AC-TTTTT-------TT--TTTGG---AT-AATTTC-T---TT-T-T--TTTAAATC--------AATAATAATG--CAATGACA
gi|16 : TTTATGCATTATCAT---GATTTTTT--CTTTAAGTTGAACTCAA-----TTTGCCATAAGATAT-T-ATTGGAC-----TAAT---AAAAA-AATT--AAG--------T--AC-TTTTT-------TT--TTTAA---AT-A----------------------------------AAT----ATG--CAAGAACA
gi|20 : ATGCATTTACAT---AAATTTGT--GATTATT--GAGCTCAC-----TTCACCATTAGATAT-T-ATTGGAT-----TTAT--AAAA--------------------C--AT-TTTTT-------TT--TTTAA---AT-A----aa
gi|23 : GCATTTACAT---AT-TGTTT--GTTTATTTTGACCTCAG-----TTCACCATAAGATAT-T-ATTAGAT-----TAAT--A---------------------------T-TTTTT-T----A-------AATG-AT-T----T-T---TT-T-T--TTTATATT--------TAT----ATG--CAAGGACccggtaataattatgcaatgtcaaaaa
gi|18 : TTTTT--GTT-ATTTTTACCTCAA-----TTCACCATAAGATAT-T---------------AT--AAGA------T-AGAGTTCTTCCTT--TT-TCTTT-T----TTT--TTTAA---ATGA----T-TGTATT-T-T--TTT-AATT--------AAT----ATG--AAAGGACta
gi|25 : tTTTTTACCTGGA-----GATGCCATTAGATAT-T-ATTGGAT-----TAAT--AAAA--------AAAG--------T--AT-TTT---------TT--TTTAA---AT-A----T-T---TG-T-T--TT--AATT--------AAT----ATG--CAcaaca
gi|26 : agcctCATTAAATAT-C-GTTGGAT-----TAAT--AATAAT-AA---AAAG--------C--AC-CTTTT-T----ATT--T----------A----T-T---TT-T-T--TTAAAATT--------AAT----ATG--CAAGGACAtggataaacacat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|30 ): TAAACATTTTATTTTTACAAGTTTTTTTAGTTAAAATGCAGGAATCATCAATATGTAATTTAAAATAGT
Unaligned ( gi|31 ): TATTGTAGCGGATTAATAAAAAAATCAAAGTACTATATTTTTCTAAATTAATGTGCAAGGACAAAA
Alignments
lowQualScore : 11111 222222222222222222222222222 11111111111
lowQualScore : 1 00000 33333 1 1 11 33333 11 333333333333333333333333333 1 444 222 22 11111111111 1 1 22 0 66666666 3333
lowQualScore : . ..... ..... . . .. ..... .. ........................... . ... ... .. ........... . . .. . ........ ....
lowQualScore : 5 66666 66666 4 3 88 33333 88 555555555555555555555555555 4 111 666 11 55555555555 6 6 22 1 00000000 5555
consensus : TATTTTATGCATTTACAT-AAA---TTTTTGTTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
Reference ( family-957 ) : TATTTTATGCATTTACAT-ANA---TTTTTGTTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
gi|1 : TATTTAATGCATTTGCAT-A-A---TGTATGTTTATTTTTACCTCAA-----TTC-ACCCTAAGATAT-TAT--TGGAT-----TAAT--AAAAAACAATA-AAACGTTC---TT--------TTTT-TT---TT---AAATTAT-A---T-T---TT-T-TTCTTTAAATC--------TAT----ATTCAA
gi|10 : TTTGATGCATTTACAT-AAA---TTTG-GTTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TTAT--AAAAAA-AATC--AA-GTAC-------------TTTT-TT---TC---AAA--AT-C---T-G---TT-T-T--TTCAAATT--------AAT----ATTCATTGACAtgtataaggacaaaaa
gi|11 : TTTTATGCATTGACAT-ACA---TTTTTGTTTATTTTGACCTCAG-----TGC-TCCATTTGTCAT-TAT--TGGAT-----TAAA--AGAAGT-ACTT------CTC---TT--------CTTT-TT---TT---TAA--AT-T---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaa
gi|12 : TAATTTATACTTTTTCAT-AT----TTTTGGTTTATGTTTACCTTAA-----TTC-ACCATTAGATAT-TAT--TGGAT-----TAAT---AAAAA-AATT-AAA-GTAC---------------TA-TT---TT---AAA--AT-A---T-T---TT-T-T--TTTGGATT---------AT----GTGTAAGGACa
gi|13 : TTTTATGCATTTACAT-ACA---TTTTTGGTTATTTTGACCTCAA------TC-GCCATTAAATAT-TAT--TGGAT-----TAAT--AAAAAA-A--T-AAA-GTAC---TT--------TTTT-TT---TT---TA------A---T-C---TT-T-T--TTTAAACT--------TAT----ATGCAAGCAC
gi|14 : TTTTATGCATTTACAT-ACA---TTTTTGTTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAC--TGAAT-----TAAT--AATAAA-A----AAA-GTAC-----------------------TT---TAA--AT-A---T-T---TT-TAT--TTTAAATT--------AAT----ATGCAAGGACA
gi|15 : ATTTTATGCATTAACGTTAAAC--TTTTTGTCTATTTTTACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--ACAAAA-AA-C-AAA-GTAC----------------------------CA-----------------T-T-T--TTAAAATT--------AAT----TTGCAAGGACAcaa
gi|16 : TTTATGCATTATCAT-GAT---TTTTTCTTTAAGTTGAACTCAA-----TTT-GCCATAAGATAT-TAT--TGGAC-----TAAT---AAAAA-AATT--AA-GTAC----T--------TTTT-TT---TT---TAA--AT-A---------------------------------AAT----ATGCAAGAACAaa
gi|17 : TATTTTATTCATTTACAT-AAA---TATTGGTTTGTTTTGACCTCAT-----TTC-GACATTAGATAT-TAT--TGGAC-----TCAT--A---------C-AAC-GTAC-------------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--aa
gi|18 : ---TTTTTGTT-ATTTTTACCTCAA-----TTC-ACCATAAGATAT-TAT----------------------AA-GAT--AGA-GTTC---TTCCTTTTTCTTTT-TTT--TT---TAA--ATGA---T-TGTATT-T-T--TTT-AATT--------AAT----ATGAAAGGACaacgacaaaaaaat
gi|19 : tATTTTATGCATTTACAT-ACA---TTTTTGTTTATTTTGAACTTAA-----TTT-GCCACTAGATAG-TAT--TG--T-----T---------------------GTG--------------TTTT-TT---TT---TAA--ATAA---TAT---TT-A-T--TTTAAATT--------GAT----ATTCAAGGAcaaca
gi|2 : TATTTTATGCATTAACAT-AAT---TTTTTGTTTAGTTTTACCTCAGTTCGCTTC-GCCATGAGATAG-TAT--TGGAT-----TAA---AAAAAA----T-AAA-ATA--------------TTTT-TT---TT---TAA--AT-A---T-C---TTAT-T--TTTAAATTTTAAATAAAAT----A-GCAAGGACaa
gi|20 : ATGCATTTACAT-AAA---TTTGTGATTATT--GAGCTCAC-----TTC-ACCATTAGATAT-TAT--TGGAT-----TTAT--AAAACA-----------------TT--------TTTT-TT---TT---TAA--AT-A---
gi|21 : TTTTATGCATTTAAAT-ATC---TTTTTGTTTATTTTGACCTAAA-----TTC-GTCATTAGA----TAT--TGGAT-----TAAT--AAAAAACAATT-AA------------------------------------------A---T-T---CT-T-T--TTTATATT--------AAT----AAGCAAGGACccggtaataattatgcaatgtcaaaaa
gi|22 : ATTTTATGCATTTACAT-AAA---TTTTTGTTCATTTTGACCTCAT-----TTC-GACATTAGA----TAT--TGGAC-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-Tcaaa
gi|23 : GCATTTACAT-AT----TGTTTGTTTATTTTGACCTCAG-----TTC-ACCATAAGATAT-TAT--TAGAT-----TAAT--A----------------------------------TT-TT---TT---TAA--AT-GATTT-T---TT-T-T--TTTATATT--------TAT----ATGCAAGGACaaaataaatattcaaagaa
gi|24 : TTTTATACATTTACAT-AAT---TTTTTATTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AA---------------------TT--------TTT---------------------------------T-T--TTTAAATT--------AAT----ATGCAAGGACAta
gi|25 : TTTTTACCTGGA-----GAT-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAA--------AAA-GTA--------------TTTT-TT---TT---TAA--AT-A---T-T---TG-T-T--TT--AATT--------AAT----ATGCATGGATAaa
gi|26 : agcctCATTAAATAT-CGT--TGGAT-----TAAT--AATAAT-AA---AAA-GCAC---CT--------TTTT-AT---TT-----------A---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaacacat
gi|27 : ctTATTTCATGCATTTA--T-AGAATTTTTTTGTCTATTTTGACTTCAA-----TTC-GCCATAAGATAT-TAT--TTGAT-----AAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTattttttttttctctccata
gi|28 : tTTTTATGCATTAACAT-AAA---GTTTTGTTTATTTTGACCTTAA-----TTC-AACATAAGATAT-TAT--TGGAC-----AAAT--AAACAA-AATT-GA---------TT--------CATT-TT---TT---TAgt
gi|29 : ATTTTATGCATTTAAAT-AAT---TTTTTGTT-AGTTTGACCTCTA-----CTC-GCCATTAGA-ATATAT--TTGAT-----TAAT--AAAATT-GATA-AAA-GTGC---CT--------TTT
gi|3 : TTTTATGTATTTACAT-ACA---TTTTTGTTTCTTTTGACCTTAA-----TTC-CCCATTAGA----TAT--TGGAT-----TAAT--AAAAAA-AAT---AA-GTAC---TT--------TTTT-TTTTATT---TAA--ATAA---T-TTAATT-T-T--TTTAAATT--------GAT----ATGCAAGGACA
gi|31 : TAT-TGTAGCGGAT-----TAAT--AAAAA--AATC-AAA-GTAC---T-----------------------------AT-A---------TT-T-T--TCTAAATT--------AAT----GTGCAAGGACAaaac
gi|4 : ATTTTATCCATTTACAT-AAT---TTTTTGTTTATTTTGACCTCAG-----CTC-GCCATTAGATAG-TAT--AGCTT-----TGATAAAAAAAA-AAAT-AAA-GTTC---AT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTAAAATT--------AAT----GTGCAAGGACAaaa
gi|5 : TTTTTTGCATTAACAT-AA-----TTTTGTTTATTTTGACCTCAA-----TTCAGC--TTAGATAT-TAT--TGGATGACCGTAAT--AAAAAA-AA-----G-ATATCTTTT--------TTTT--T---TT---TAA--ATGA---T-T---TC-T-T--TTAAAATT--------GAT----TTGCAAGGACAaaa
gi|6 : TATTTTATGCATTTACAT-AAA---TTTTTGTTTAGTTTGATTTTAA-----TTT-GCCGTTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATTAAAA-GTAC----T--------TTTT-TT---TT---TAA--AT-AAC-A-T---TT-T-T--ATTAAAAT--------AAT----ATTCAAGGACaaa
gi|7 : tTTTATGAATT-ACAT-AAA---TGTTTGTTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAT--TGGAT-----TAAT---AACAA-AATT-GAA-GCAC---TT--------TTTT-TT---TTGGATAA--TT-T---C-T---TT-T-T--TTTAAATC--------AATAATAATGCAATGACA
gi|8 : TATTTTATGCATTTACAT-ACA---TTTTTGTTTATTTTGACCTCAA-----TTC-ACCATTAGATAT-TAT--TGAAT-----TAAT--AAAAAA-AATT-AAA-GTAT---TT--------TTTTATT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGAACA
gi|9 : TATTTTATGCATCTATAT-------TATTTGTTTATTTTTACCTCAA-----TTC-GCCATTTGATAT-TAA--TTGAT-----TAAT--AAAATA-TATC-ATA-GTA----TT--------TTTA-TT---TT---AAA--AT-AT--T-T---TT-T-T--TTTAAAAC--------AAT--------AAGGACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): TAAACATTTTATTTTTACAAGTTTTTTTAGTTAAAATGCAGGAATCATCAATATGTAATTTAAAATAGT
Alignments
lowQualScore : 222222222222222222222222222 11111111111
lowQualScore : 1 888 1 1 1 33333 1 1 11 33333 11 333333333333333333333333333 1 444 222 22 11111111111 1 1 22 0 66666666 3333
lowQualScore : . ... . . . ..... . . .. ..... .. ........................... . ... ... .. ........... . . .. . ........ ....
lowQualScore : 5 222 5 5 5 66666 4 3 88 33333 88 555555555555555555555555555 4 111 666 11 55555555555 6 6 22 1 00000000 5555
consensus : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
Reference ( family-957 ) : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
gi|1 : TATTTAATGCATTTGCAT-AA--TG-TAT-G-TTTATTTTTACCTCAA-----TTC-ACCCTAAGATAT-TAT--TGGAT-----TAAT--AAAAAACAATA-AAACGTTC---TT--------TTTT-TT---TT---AAATTAT-A---T-T---TT-T-TTCTTTAAATC--------TAT----ATTCAA
gi|10 : TTTGATGCATTTACAT-AAA-TT-TG--G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TTAT--AAAAAA-AATC--AA-GTAC-------------TTTT-TT---TC---AAA--AT-C---T-G---TT-T-T--TTCAAATT--------AAT----ATTCATTGACAtgtataaggacaaaaa
gi|11 : TTTTATGCATTGACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAG-----TGC-TCCATTTGTCAT-TAT--TGGAT-----TAAA--AGAAGT-ACTT------CTC---TT--------CTTT-TT---TT---TAA--AT-T---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaa
gi|12 : TAATTTATACTTTTTCAT-A---TT-TTT-GGTTTATGTTTACCTTAA-----TTC-ACCATTAGATAT-TAT--TGGAT-----TAAT---AAAAA-AATT-AAA-GTAC---------------TA-TT---TT---AAA--AT-A---T-T---TT-T-T--TTTGGATT---------AT----GTGTAAGGACa
gi|13 : TTTTATGCATTTACAT-ACA-TT-TTT-G-GTTATTTTGACCTCAA------TC-GCCATTAAATAT-TAT--TGGAT-----TAAT--AAAAAA-A--T-AAA-GTAC---TT--------TTTT-TT---TT---TA------A---T-C---TT-T-T--TTTAAACT--------TAT----ATGCAAGCAC
gi|14 : TTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAC--TGAAT-----TAAT--AATAAA-A----AAA-GTAC-----------------------TT---TAA--AT-A---T-T---TT-TAT--TTTAAATT--------AAT----ATGCAAGGACA
gi|15 : ATTTTATGCATTAACGTTAAACTT-TTT-G-TCTATTTTTACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--ACAAAA-AA-C-AAA-GTAC----------------------------CA-----------------T-T-T--TTAAAATT--------AAT----TTGCAAGGACAcaa
gi|16 : TTTATGCATTATCAT-GAT-TT-TTT-C-TTTAAGTTGAACTCAA-----TTT-GCCATAAGATAT-TAT--TGGAC-----TAAT---AAAAA-AATT--AA-GTAC----T--------TTTT-TT---TT---TAA--AT-A---------------------------------AAT----ATGCAAGAACAaa
gi|17 : TATTTTATTCATTTACAT-AAA-TA-TTG-G-TTTGTTTTGACCTCAT-----TTC-GACATTAGATAT-TAT--TGGAC-----TCAT--A---------C-AAC-GTAC-------------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--aa
gi|18 : -TT-TTT-G-TT-ATTTTTACCTCAA-----TTC-ACCATAAGATAT-TAT----------------------AA-GAT--AGA-GTTC---TTCCTTTTTCTTTT-TTT--TT---TAA--ATGA---T-TGTATT-T-T--TTT-AATT--------AAT----ATGAAAGGACaacgacaaaaaaat
gi|19 : tATTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGAACTTAA-----TTT-GCCACTAGATAG-TAT--TG--T-----T---------------------GTG--------------TTTT-TT---TT---TAA--ATAA---TAT---TT-A-T--TTTAAATT--------GAT----ATTCAAGGAcaaca
gi|2 : TATTTTATGCATTAACAT-AAT-TT-TTT-G-TTTAGTTTTACCTCAGTTCGCTTC-GCCATGAGATAG-TAT--TGGAT-----TAA---AAAAAA----T-AAA-ATA--------------TTTT-TT---TT---TAA--AT-A---T-C---TTAT-T--TTTAAATTTTAAATAAAAT----A-GCAAGGACaa
gi|20 : ATGCATTTACAT-AAA-TT-TGT-G-ATTATT--GAGCTCAC-----TTC-ACCATTAGATAT-TAT--TGGAT-----TTAT--AAAACA-----------------TT--------TTTT-TT---TT---TAA--AT-A---
gi|21 : TTTTATGCATTTAAAT-ATC-TT-TTT-G-TTTATTTTGACCTAAA-----TTC-GTCATTAGA----TAT--TGGAT-----TAAT--AAAAAACAATT-AA------------------------------------------A---T-T---CT-T-T--TTTATATT--------AAT----AAGCAAGGACccggtaataattatgcaatgtcaaaaa
gi|22 : ATTTTATGCATTTACAT-AAA-TT-TTT-G-TTCATTTTGACCTCAT-----TTC-GACATTAGA----TAT--TGGAC-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-Tcaaa
gi|23 : GCATTTACAT-A---TTGTTT-G-TTTATTTTGACCTCAG-----TTC-ACCATAAGATAT-TAT--TAGAT-----TAAT--A----------------------------------TT-TT---TT---TAA--AT-GATTT-T---TT-T-T--TTTATATT--------TAT----ATGCAAGGACaaaataaatattcaaagaa
gi|24 : TTTTATACATTTACAT-AAT-TT-TTT-A-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AA---------------------TT--------TTT---------------------------------T-T--TTTAAATT--------AAT----ATGCAAGGACAta
gi|25 : TTTTTACCTGGA-----GAT-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAA--------AAA-GTA--------------TTTT-TT---TT---TAA--AT-A---T-T---TG-T-T--TT--AATT--------AAT----ATGCATGGATAaa
gi|26 : agcctCATTAAATAT-CGT--TGGAT-----TAAT--AATAAT-AA---AAA-GCAC---CT--------TTTT-AT---TT-----------A---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaacacat
gi|27 : ctTATTTCATGCATTTATAG-AAT-TT-TTTTG-TCTATTTTGACTTCAA-----TTC-GCCATAAGATAT-TAT--TTGAT-----AAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTattttttttttctctccata
gi|28 : tTTTTATGCATTAACAT-AAA-GT-TTT-G-TTTATTTTGACCTTAA-----TTC-AACATAAGATAT-TAT--TGGAC-----AAAT--AAACAA-AATT-GA---------TT--------CATT-TT---TT---TAgt
gi|29 : ATTTTATGCATTTAAAT-AAT-TT-TTT-G-TT-AGTTTGACCTCTA-----CTC-GCCATTAGA-ATATAT--TTGAT-----TAAT--AAAATT-GATA-AAA-GTGC---CT--------TTT
gi|3 : TTTTATGTATTTACAT-ACA-TT-TTT-G-TTTCTTTTGACCTTAA-----TTC-CCCATTAGA----TAT--TGGAT-----TAAT--AAAAAA-AAT---AA-GTAC---TT--------TTTT-TTTTATT---TAA--ATAA---T-TTAATT-T-T--TTTAAATT--------GAT----ATGCAAGGACA
gi|31 : TAT-TGTAGCGGAT-----TAAT--AAAAA--AATC-AAA-GTAC---T-----------------------------AT-A---------TT-T-T--TCTAAATT--------AAT----GTGCAAGGACAaaac
gi|4 : ATTTTATCCATTTACAT-AAT-TT-TTT-G-TTTATTTTGACCTCAG-----CTC-GCCATTAGATAG-TAT--AGCTT-----TGATAAAAAAAA-AAAT-AAA-GTTC---AT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTAAAATT--------AAT----GTGCAAGGACAaaa
gi|5 : TTTTTTGCATTAACAT-AA---T-TTT-G-TTTATTTTGACCTCAA-----TTCAGC--TTAGATAT-TAT--TGGATGACCGTAAT--AAAAAA-AA-----G-ATATCTTTT--------TTTT--T---TT---TAA--ATGA---T-T---TC-T-T--TTAAAATT--------GAT----TTGCAAGGACAaaa
gi|6 : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTAGTTTGATTTTAA-----TTT-GCCGTTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATTAAAA-GTAC----T--------TTTT-TT---TT---TAA--AT-AAC-A-T---TT-T-T--ATTAAAAT--------AAT----ATTCAAGGACaaa
gi|7 : tTTTATGAATT-ACAT-AAA-TG-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAT--TGGAT-----TAAT---AACAA-AATT-GAA-GCAC---TT--------TTTT-TT---TTGGATAA--TT-T---C-T---TT-T-T--TTTAAATC--------AATAATAATGCAATGACA
gi|8 : TATTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-ACCATTAGATAT-TAT--TGAAT-----TAAT--AAAAAA-AATT-AAA-GTAT---TT--------TTTTATT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGAACA
gi|9 : TATTTTATGCATCTATAT-TA-----TTT-G-TTTATTTTTACCTCAA-----TTC-GCCATTTGATAT-TAA--TTGAT-----TAAT--AAAATA-TATC-ATA-GTA----TT--------TTTA-TT---TT---AAA--AT-AT--T-T---TT-T-T--TTTAAAAC--------AAT--------AAGGACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): TAAACATTTTATTTTTACAAGTTTTTTTAGTTAAAATGCAGGAATCATCAATATGTAATTTAAAATAGT
Alignments
lowQualScore : 222222222222222222222222222 11111111111
lowQualScore : 1 888 1 1 1 33333 1 1 11 33333 11 333333333333333333333333333 1 444 222 22 11111111111 1 1 22 0 66666666 3333
lowQualScore : . ... . . . ..... . . .. ..... .. ........................... . ... ... .. ........... . . .. . ........ ....
lowQualScore : 5 222 5 5 5 66666 4 3 88 33333 88 555555555555555555555555555 4 111 666 11 55555555555 6 6 22 1 00000000 5555
consensus : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
Reference ( family-957 ) : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
gi|1 : TATTTAATGCATTTGCAT-AA--TG-TAT-G-TTTATTTTTACCTCAA-----TTC-ACCCTAAGATAT-TAT--TGGAT-----TAAT--AAAAAACAATA-AAACGTTC---TT--------TTTT-TT---TT---AAATTAT-A---T-T---TT-T-TTCTTTAAATC--------TAT----ATTCAA
gi|10 : TTTGATGCATTTACAT-AAA-TT-TG--G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TTAT--AAAAAA-AATC--AA-GTAC-------------TTTT-TT---TC---AAA--AT-C---T-G---TT-T-T--TTCAAATT--------AAT----ATTCATTGACAtgtataaggacaaaaa
gi|11 : TTTTATGCATTGACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAG-----TGC-TCCATTTGTCAT-TAT--TGGAT-----TAAA--AGAAGT-ACTT------CTC---TT--------CTTT-TT---TT---TAA--AT-T---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaa
gi|12 : TAATTTATACTTTTTCAT-A---TT-TTT-GGTTTATGTTTACCTTAA-----TTC-ACCATTAGATAT-TAT--TGGAT-----TAAT---AAAAA-AATT-AAA-GTAC---------------TA-TT---TT---AAA--AT-A---T-T---TT-T-T--TTTGGATT---------AT----GTGTAAGGACa
gi|13 : TTTTATGCATTTACAT-ACA-TT-TTT-G-GTTATTTTGACCTCAA------TC-GCCATTAAATAT-TAT--TGGAT-----TAAT--AAAAAA-A--T-AAA-GTAC---TT--------TTTT-TT---TT---TA------A---T-C---TT-T-T--TTTAAACT--------TAT----ATGCAAGCAC
gi|14 : TTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAC--TGAAT-----TAAT--AATAAA-A----AAA-GTAC-----------------------TT---TAA--AT-A---T-T---TT-TAT--TTTAAATT--------AAT----ATGCAAGGACA
gi|15 : ATTTTATGCATTAACGTTAAACTT-TTT-G-TCTATTTTTACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--ACAAAA-AA-C-AAA-GTAC----------------------------CA-----------------T-T-T--TTAAAATT--------AAT----TTGCAAGGACAcaa
gi|16 : TTTATGCATTATCAT-GAT-TT-TTT-C-TTTAAGTTGAACTCAA-----TTT-GCCATAAGATAT-TAT--TGGAC-----TAAT---AAAAA-AATT--AA-GTAC----T--------TTTT-TT---TT---TAA--AT-A---------------------------------AAT----ATGCAAGAACAaa
gi|17 : TATTTTATTCATTTACAT-AAA-TA-TTG-G-TTTGTTTTGACCTCAT-----TTC-GACATTAGATAT-TAT--TGGAC-----TCAT--A---------C-AAC-GTAC-------------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--aa
gi|18 : -TT-TTT-G-TT-ATTTTTACCTCAA-----TTC-ACCATAAGATAT-TAT----------------------AA-GAT--AGA-GTTC---TTCCTTTTTCTTTT-TTT--TT---TAA--ATGA---T-TGTATT-T-T--TTT-AATT--------AAT----ATGAAAGGACaacgacaaaaaaat
gi|19 : tATTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGAACTTAA-----TTT-GCCACTAGATAG-TAT--TG--T-----T---------------------GTG--------------TTTT-TT---TT---TAA--ATAA---TAT---TT-A-T--TTTAAATT--------GAT----ATTCAAGGAcaaca
gi|2 : TATTTTATGCATTAACAT-AAT-TT-TTT-G-TTTAGTTTTACCTCAGTTCGCTTC-GCCATGAGATAG-TAT--TGGAT-----TAA---AAAAAA----T-AAA-ATA--------------TTTT-TT---TT---TAA--AT-A---T-C---TTAT-T--TTTAAATTTTAAATAAAAT----A-GCAAGGACaa
gi|20 : ATGCATTTACAT-AAA-TT-TGT-G-ATTATT--GAGCTCAC-----TTC-ACCATTAGATAT-TAT--TGGAT-----TTAT--AAAACA-----------------TT--------TTTT-TT---TT---TAA--AT-A---
gi|21 : TTTTATGCATTTAAAT-ATC-TT-TTT-G-TTTATTTTGACCTAAA-----TTC-GTCATTAGA----TAT--TGGAT-----TAAT--AAAAAACAATT-AA------------------------------------------A---T-T---CT-T-T--TTTATATT--------AAT----AAGCAAGGACccggtaataattatgcaatgtcaaaaa
gi|22 : ATTTTATGCATTTACAT-AAA-TT-TTT-G-TTCATTTTGACCTCAT-----TTC-GACATTAGA----TAT--TGGAC-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-Tcaaa
gi|23 : GCATTTACAT-A---TTGTTT-G-TTTATTTTGACCTCAG-----TTC-ACCATAAGATAT-TAT--TAGAT-----TAAT--A----------------------------------TT-TT---TT---TAA--AT-GATTT-T---TT-T-T--TTTATATT--------TAT----ATGCAAGGACaaaataaatattcaaagaa
gi|24 : TTTTATACATTTACAT-AAT-TT-TTT-A-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AA---------------------TT--------TTT---------------------------------T-T--TTTAAATT--------AAT----ATGCAAGGACAta
gi|25 : TTTTTACCTGGA-----GAT-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAA--------AAA-GTA--------------TTTT-TT---TT---TAA--AT-A---T-T---TG-T-T--TT--AATT--------AAT----ATGCATGGATAaa
gi|26 : agcctCATTAAATAT-CGT--TGGAT-----TAAT--AATAAT-AA---AAA-GCAC---CT--------TTTT-AT---TT-----------A---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaacacat
gi|27 : ctTATTTCATGCATTTATAG-AAT-TT-TTTTG-TCTATTTTGACTTCAA-----TTC-GCCATAAGATAT-TAT--TTGAT-----AAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTattttttttttctctccata
gi|28 : tTTTTATGCATTAACAT-AAA-GT-TTT-G-TTTATTTTGACCTTAA-----TTC-AACATAAGATAT-TAT--TGGAC-----AAAT--AAACAA-AATT-GA---------TT--------CATT-TT---TT---TAgt
gi|29 : ATTTTATGCATTTAAAT-AAT-TT-TTT-G-TT-AGTTTGACCTCTA-----CTC-GCCATTAGA-ATATAT--TTGAT-----TAAT--AAAATT-GATA-AAA-GTGC---CT--------TTT
gi|3 : TTTTATGTATTTACAT-ACA-TT-TTT-G-TTTCTTTTGACCTTAA-----TTC-CCCATTAGA----TAT--TGGAT-----TAAT--AAAAAA-AAT---AA-GTAC---TT--------TTTT-TTTTATT---TAA--ATAA---T-TTAATT-T-T--TTTAAATT--------GAT----ATGCAAGGACA
gi|31 : TAT-TGTAGCGGAT-----TAAT--AAAAA--AATC-AAA-GTAC---T-----------------------------AT-A---------TT-T-T--TCTAAATT--------AAT----GTGCAAGGACAaaac
gi|4 : ATTTTATCCATTTACAT-AAT-TT-TTT-G-TTTATTTTGACCTCAG-----CTC-GCCATTAGATAG-TAT--AGCTT-----TGATAAAAAAAA-AAAT-AAA-GTTC---AT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTAAAATT--------AAT----GTGCAAGGACAaaa
gi|5 : TTTTTTGCATTAACAT-AA---T-TTT-G-TTTATTTTGACCTCAA-----TTCAGC--TTAGATAT-TAT--TGGATGACCGTAAT--AAAAAA-AA-----G-ATATCTTTT--------TTTT--T---TT---TAA--ATGA---T-T---TC-T-T--TTAAAATT--------GAT----TTGCAAGGACAaaa
gi|6 : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTAGTTTGATTTTAA-----TTT-GCCGTTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATTAAAA-GTAC----T--------TTTT-TT---TT---TAA--AT-AAC-A-T---TT-T-T--ATTAAAAT--------AAT----ATTCAAGGACaaa
gi|7 : tTTTATGAATT-ACAT-AAA-TG-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAT--TGGAT-----TAAT---AACAA-AATT-GAA-GCAC---TT--------TTTT-TT---TTGGATAA--TT-T---C-T---TT-T-T--TTTAAATC--------AATAATAATGCAATGACA
gi|8 : TATTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-ACCATTAGATAT-TAT--TGAAT-----TAAT--AAAAAA-AATT-AAA-GTAT---TT--------TTTTATT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGAACA
gi|9 : TATTTTATGCATCTATAT-TA-----TTT-G-TTTATTTTTACCTCAA-----TTC-GCCATTTGATAT-TAA--TTGAT-----TAAT--AAAATA-TATC-ATA-GTA----TT--------TTTA-TT---TT---AAA--AT-AT--T-T---TT-T-T--TTTAAAAC--------AAT--------AAGGACA
blockSeqs : T AAC G T G TTCGC A A AG GACCG AA GATAGAGTTCTTCCTTTTTC A TTA GGA . GATTGTA A A . TTAAATAA AATA
blockSeqs : . AA . . . . . . . . . AATTAAAGTACTT . T . . AATTTAA . . . . .
blockSeqs : . CA . . . . . . . . . AATTAAAGTACTT . . . . GATTTT . . . . .
blockSeqs : . CA . . . . . . . . . GATAAAAGTGCCT . . . . AATAT . . . . .
blockSeqs : . CA . . . . . . . . . AAATAAAGTTCAT . . . . AACAT . . . . .
blockSeqs : . AT . . . . . . . . . AATTAAAAGTACT . . . . GATT . . . . .
blockSeqs : . AA . . . . . . . . . AATTGAAGCACTT . . . . ATTT . . . . .
blockSeqs : . CA . . . . . . . . . AATTAAAGTATTT . . . . CTG . . . . .
blockSeqs : . AT . . . . . . . . . AATCAAAGTACT . . . . TTT . . . . .
blockSeqs : . AA . . . . . . . . . AAGATATCTTTT . . . . ATT . . . . .
blockSeqs : . TC . . . . . . . . . TATCATAGTATT . . . . ATC . . . . .
blockSeqs : . AA . . . . . . . . . AATTAAAGTAC . . . . ATT . . . . .
blockSeqs : . AT . . . . . . . . . ATAAAGTACTT . . . . ATT . . . . .
blockSeqs : . AT . . . . . . . . . AATTAAGTACT . . . . ATC . . . . .
blockSeqs : . AA . . . . . . . . . AAAAAGCACCT . . . . ATT . . . . .
blockSeqs : . AT . . . . . . . . . AATAAGTACTT . . . . ATT . . . . .
blockSeqs : . CA . . . . . . . . . AATCAAGTAC . . . . ATT . . . . .
blockSeqs : . AT . . . . . . . . . AACAAAGTAC . . . . ATT . . . . .
blockSeqs : . AA . . . . . . . . . ACTTCTCTT . . . . TCT . . . . .
blockSeqs : . AA . . . . . . . . . AAAAGTAC . . . . ATT . . . . .
blockSeqs : . CA . . . . . . . . . CAACGTAC . . . . A . . . . .
blockSeqs : . A . . . . . . . . . AATTGATT . . . . A . . . . .
blockSeqs : . A . . . . . . . . . TAAAATA . . . . . . . . . .
blockSeqs : . . . . . . . . . . . CAATTAA . . . . . . . .
blockSeqs : . . . . . . . . . . . AAAGTA . . . .
blockSeqs : . . . . . . . . . GTG . . .
blockSeqs : . . . . . . TT .
blockSeqs : . . . . TT
blockSeqs : . . . . .
blockSeqCons : AA* AATTAAAGTACTT************** ** **
originalCons : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
finalCons : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAAAATTAAAGTACTT--------------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): TAAACATTTTATTTTTACAAGTTTTTTTAGTTAAAATGCAGGAATCATCAATATGTAATTTAAAATAGT
Alignments
lowQualScore : 222222222222222222222222222 11111111111
lowQualScore : 1 888 1 1 1 33333 1 1 11 33333 11 333333333333333333333333333 1 444 222 22 11111111111 1 1 22 0 66666666 3333
lowQualScore : . ... . . . ..... . . .. ..... .. ........................... . ... ... .. ........... . . .. . ........ ....
lowQualScore : 5 222 5 5 5 66666 4 3 88 33333 88 555555555555555555555555555 4 111 666 11 55555555555 6 6 22 1 00000000 5555
consensus : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
Reference ( family-957 ) : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGGACA
gi|1 : TATTTAATGCATTTGCAT-AA--TG-TAT-G-TTTATTTTTACCTCAA-----TTC-ACCCTAAGATAT-TAT--TGGAT-----TAAT--AAAAAACAATA-AAACGTTC---TT--------TTTT-TT---TT---AAATTAT-A---T-T---TT-T-TTCTTTAAATC--------TAT----ATTCAA
gi|10 : TTTGATGCATTTACAT-AAA-TT-TG--G-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TTAT--AAAAAA-AATC--AA-GTAC-------------TTTT-TT---TC---AAA--AT-C---T-G---TT-T-T--TTCAAATT--------AAT----ATTCATTGACAtgtataaggacaaaaa
gi|11 : TTTTATGCATTGACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAG-----TGC-TCCATTTGTCAT-TAT--TGGAT-----TAAA--AGAAGT-ACTT------CTC---TT--------CTTT-TT---TT---TAA--AT-T---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaa
gi|12 : TAATTTATACTTTTTCAT-A---TT-TTT-GGTTTATGTTTACCTTAA-----TTC-ACCATTAGATAT-TAT--TGGAT-----TAAT---AAAAA-AATT-AAA-GTAC---------------TA-TT---TT---AAA--AT-A---T-T---TT-T-T--TTTGGATT---------AT----GTGTAAGGACa
gi|13 : TTTTATGCATTTACAT-ACA-TT-TTT-G-GTTATTTTGACCTCAA------TC-GCCATTAAATAT-TAT--TGGAT-----TAAT--AAAAAA-A--T-AAA-GTAC---TT--------TTTT-TT---TT---TA------A---T-C---TT-T-T--TTTAAACT--------TAT----ATGCAAGCAC
gi|14 : TTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAC--TGAAT-----TAAT--AATAAA-A----AAA-GTAC-----------------------TT---TAA--AT-A---T-T---TT-TAT--TTTAAATT--------AAT----ATGCAAGGACA
gi|15 : ATTTTATGCATTAACGTTAAACTT-TTT-G-TCTATTTTTACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--ACAAAA-AA-C-AAA-GTAC----------------------------CA-----------------T-T-T--TTAAAATT--------AAT----TTGCAAGGACAcaa
gi|16 : TTTATGCATTATCAT-GAT-TT-TTT-C-TTTAAGTTGAACTCAA-----TTT-GCCATAAGATAT-TAT--TGGAC-----TAAT---AAAAA-AATT--AA-GTAC----T--------TTTT-TT---TT---TAA--AT-A---------------------------------AAT----ATGCAAGAACAaa
gi|17 : TATTTTATTCATTTACAT-AAA-TA-TTG-G-TTTGTTTTGACCTCAT-----TTC-GACATTAGATAT-TAT--TGGAC-----TCAT--A---------C-AAC-GTAC-------------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--aa
gi|18 : -TT-TTT-G-TT-ATTTTTACCTCAA-----TTC-ACCATAAGATAT-TAT----------------------AA-GAT--AGA-GTTC---TTCCTTTTTCTTTT-TTT--TT---TAA--ATGA---T-TGTATT-T-T--TTT-AATT--------AAT----ATGAAAGGACaacgacaaaaaaat
gi|19 : tATTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGAACTTAA-----TTT-GCCACTAGATAG-TAT--TG--T-----T---------------------GTG--------------TTTT-TT---TT---TAA--ATAA---TAT---TT-A-T--TTTAAATT--------GAT----ATTCAAGGAcaaca
gi|2 : TATTTTATGCATTAACAT-AAT-TT-TTT-G-TTTAGTTTTACCTCAGTTCGCTTC-GCCATGAGATAG-TAT--TGGAT-----TAA---AAAAAA----T-AAA-ATA--------------TTTT-TT---TT---TAA--AT-A---T-C---TTAT-T--TTTAAATTTTAAATAAAAT----A-GCAAGGACaa
gi|20 : ATGCATTTACAT-AAA-TT-TGT-G-ATTATT--GAGCTCAC-----TTC-ACCATTAGATAT-TAT--TGGAT-----TTAT--AAAACA-----------------TT--------TTTT-TT---TT---TAA--AT-A---
gi|21 : TTTTATGCATTTAAAT-ATC-TT-TTT-G-TTTATTTTGACCTAAA-----TTC-GTCATTAGA----TAT--TGGAT-----TAAT--AAAAAACAATT-AA------------------------------------------A---T-T---CT-T-T--TTTATATT--------AAT----AAGCAAGGACccggtaataattatgcaatgtcaaaaa
gi|22 : ATTTTATGCATTTACAT-AAA-TT-TTT-G-TTCATTTTGACCTCAT-----TTC-GACATTAGA----TAT--TGGAC-----TAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTT-Tcaaa
gi|23 : GCATTTACAT-A---TTGTTT-G-TTTATTTTGACCTCAG-----TTC-ACCATAAGATAT-TAT--TAGAT-----TAAT--A----------------------------------TT-TT---TT---TAA--AT-GATTT-T---TT-T-T--TTTATATT--------TAT----ATGCAAGGACaaaataaatattcaaagaa
gi|24 : TTTTATACATTTACAT-AAT-TT-TTT-A-TTTATTTTGACCTCAA-----TTC-GCCATTAGATAT-TAT--TGGAT-----TAAT--AA---------------------TT--------TTT---------------------------------T-T--TTTAAATT--------AAT----ATGCAAGGACAta
gi|25 : TTTTTACCTGGA-----GAT-GCCATTAGATAT-TAT--TGGAT-----TAAT--AAAA--------AAA-GTA--------------TTTT-TT---TT---TAA--AT-A---T-T---TG-T-T--TT--AATT--------AAT----ATGCATGGATAaa
gi|26 : agcctCATTAAATAT-CGT--TGGAT-----TAAT--AATAAT-AA---AAA-GCAC---CT--------TTTT-AT---TT-----------A---T-T---TT-T-T--TTAAAATT--------AAT----ATGCAAGGACAaacacat
gi|27 : ctTATTTCATGCATTTATAG-AAT-TT-TTTTG-TCTATTTTGACTTCAA-----TTC-GCCATAAGATAT-TAT--TTGAT-----AAAT--AAAAAA-AATT-AAA-GTAC---TT--------TTTattttttttttctctccata
gi|28 : tTTTTATGCATTAACAT-AAA-GT-TTT-G-TTTATTTTGACCTTAA-----TTC-AACATAAGATAT-TAT--TGGAC-----AAAT--AAACAA-AATT-GA---------TT--------CATT-TT---TT---TAgt
gi|29 : ATTTTATGCATTTAAAT-AAT-TT-TTT-G-TT-AGTTTGACCTCTA-----CTC-GCCATTAGA-ATATAT--TTGAT-----TAAT--AAAATT-GATA-AAA-GTGC---CT--------TTT
gi|3 : TTTTATGTATTTACAT-ACA-TT-TTT-G-TTTCTTTTGACCTTAA-----TTC-CCCATTAGA----TAT--TGGAT-----TAAT--AAAAAA-AAT---AA-GTAC---TT--------TTTT-TTTTATT---TAA--ATAA---T-TTAATT-T-T--TTTAAATT--------GAT----ATGCAAGGACA
gi|31 : TAT-TGTAGCGGAT-----TAAT--AAAAA--AATC-AAA-GTAC---T-----------------------------AT-A---------TT-T-T--TCTAAATT--------AAT----GTGCAAGGACAaaac
gi|4 : ATTTTATCCATTTACAT-AAT-TT-TTT-G-TTTATTTTGACCTCAG-----CTC-GCCATTAGATAG-TAT--AGCTT-----TGATAAAAAAAA-AAAT-AAA-GTTC---AT--------TTTT-TT---TT---TAA--AT-A---T-T---TT-T-T--TTAAAATT--------AAT----GTGCAAGGACAaaa
gi|5 : TTTTTTGCATTAACAT-AA---T-TTT-G-TTTATTTTGACCTCAA-----TTCAGC--TTAGATAT-TAT--TGGATGACCGTAAT--AAAAAA-AA-----G-ATATCTTTT--------TTTT--T---TT---TAA--ATGA---T-T---TC-T-T--TTAAAATT--------GAT----TTGCAAGGACAaaa
gi|6 : TATTTTATGCATTTACAT-AAA-TT-TTT-G-TTTAGTTTGATTTTAA-----TTT-GCCGTTAGATAT-TAT--TGGAT-----TAAT--AAAAAA-AATTAAAA-GTAC----T--------TTTT-TT---TT---TAA--AT-AAC-A-T---TT-T-T--ATTAAAAT--------AAT----ATTCAAGGACaaa
gi|7 : tTTTATGAATT-ACAT-AAA-TG-TTT-G-TTTATTTTGACCTCAA-----TTC-GCCATTAAATAT-TAT--TGGAT-----TAAT---AACAA-AATT-GAA-GCAC---TT--------TTTT-TT---TTGGATAA--TT-T---C-T---TT-T-T--TTTAAATC--------AATAATAATGCAATGACA
gi|8 : TATTTTATGCATTTACAT-ACA-TT-TTT-G-TTTATTTTGACCTCAA-----TTC-ACCATTAGATAT-TAT--TGAAT-----TAAT--AAAAAA-AATT-AAA-GTAT---TT--------TTTTATT---TT---TAA--AT-A---T-T---TT-T-T--TTTAAATT--------AAT----ATGCAAGAACA
gi|9 : TATTTTATGCATCTATAT-TA-----TTT-G-TTTATTTTTACCTCAA-----TTC-GCCATTTGATAT-TAA--TTGAT-----TAAT--AAAATA-TATC-ATA-GTA----TT--------TTTA-TT---TT---AAA--AT-AT--T-T---TT-T-T--TTTAAAAC--------AAT--------AAGGACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): TAAACATTTTATTTTTACAAGTTTTTTTAGTTAAAATGCAGGAATCATCAATATGTAATTTAAAATAGT