lowQualScore : 1
lowQualScore : 0 1 777 4444 555555 1 1 4
lowQualScore : . . ... .... ...... . . .
lowQualScore : 4 3 000 4444 222222 3 3 3
consensus : AAGAGTTGTCAGAAGAC-AACAAA---GCT---CGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
Reference ( gi|4 ) : AAGAGTTGTCAGATGAC-AACAAA---GCT---TGCC------G-AT-GGAATAAAACTCACCACCCATGCAAAG
gi|7 : AAGAGTTGTCAAAAGAT-AACAAA---GAT---CGCC------G-AT-GGGATAAAACTCACCACCCATGC
gi|1 : AAGAGCTATCAGAAGAC-AACAATTTTGCT---CGCT------G-AT-GGGATAAAACTCACCACCCATGCAAA
gi|3 : taacAAGAGTTGTCAGAAGAC-AACAAA---ACT---CACT------G-AC-AAGGTAAAACTCACTACCCATGCAAA
gi|31 : cAAGAGTTGTCAGATGAC-AAC-AA---GCT---TGCC------G-AT-GGGAT
gi|32 : AAGAGTTGTCAGAAGAC-AACAAA---GCT---CACC------G-AT-G
gi|5 : GAGCTATCAGAAGAC-AACAATTTTGCT---CGCT------G-AT-GGGATAAAACTCACCACCCATGCAAcga
gi|8 : GAGTTGTCAGAAGAC-AACAAA---ACT---CACT------G-AC-AAGGTAAAACTCACCACCCATGCAA
gi|20 : GAGTTGTCAGAAGACCAACAAA---GCT---TGCC------G-AT-ATGATAAAACTCACCACC
gi|18 : GAGTTGTCAGATGAC-AACAAC---GCT---CATC------T-AT-GGGATAAAACTTTCCATCCATGt
gi|22 : GAGTTGTCAGAAAAC-AACAAA---GCTCACTGTCA-----G-AT-GGGATAAAACTCACC
gi|11 : AGTTGTCAGAAGAC-AACAAA---GCT---TGCC------T-AT-GGGATAAAACTCACCAACCATGCAAg
gi|10 : GTTGTCACATGAC-AACAAA---GTT---TGCC------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|13 : GTTGTCAAAAGAC-AACAAA---GCT---TGCC------G-AT-GGAATAAAACTTGCCACCCATGCAA
gi|9 : GTTGTCAGATGAC-AACAAA---GCT---CACC------G-AT-GGGATAAAATTTACCACCAATGCAAA
gi|2 : GTTGTCAGAAGAC-AACAAA---GCT---CGCCTAGTGAGTAT-GGGATAAAACTCACCACCCATGCAA
gi|17 : GTTGTAAGACGAC-AACATA---GC-------C------A-TT-GGGATAAAACTCACCACCCTTGCAAAG
gi|16 : cTTGTGAGATGAC-AACAAA---GTT---CCCC------T-AT-GGGATAAAACTCACCACCCATGCAA
gi|15 : TTGTTAAAGGAC-AACAAA---GCT---CACC------T-AT-GGAATAAAACTCACCACCTATGCAA
gi|24 : TTGTCAGAAGAC-AACAAA---GCT---CACC------G-AT-GCGATAAATCTCACCACCCATGC
gi|14 : TTTTCAGATGAC-AAGAAA---ACT---CGTT------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|12 : TTGTTAGAAGAC-AGCAAA---ACT---CGTC------G-ATTGGGATAAAACTCACCACCCATGCAA
gi|19 : TGTCAGATGAC-AACAAA---GCC---CGCC------A-AT-GAGATAAAACTCACCACCCATGCAA
gi|25 : TGTCAGA--A--AACAAA---GCT---TGCC------G-AT-GGGATAAAACTCACCACCCATGTAA
gi|23 : TGTCAAAAG-C-GACAAA---GCT---CGCC------T-AT-GGCATAAA-CTCACCACCAATGCAAA
gi|21 : TCAGAAGAC-AACAATTTTGCT---CGCT------G-AT-GGGATAAAACTCACCACCCATG
gi|26 : aGAAGAC-AACAAA---GCT---GGCT------G-AT-GGAATAAAACTCACCACCCATGCAAA
gi|27 : GAC-AACAAA---GCT---CGCC------T-AT-GGGATAAAACTCACCACCCTTGCAAA
gi|28 : aGAC-AGCAAA---GTT---CTCC------T-AT-GGGATAAAACTCACCACCCATGCAAA
gi|29 : aC-AACAAA---GCT---TGCA------T-AT-GGGATGAAACTCACCA-CCATGCAAAG
gi|30 : -AACAAA---TCT---TGCT------A-AT-GGGATAAAACTCACCACCCATGCAGAG
gi|33 : T-GGAATAAAACTCACCACCCATGCAAAG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AAATACTTTCTAATAAGATGGCCTACACCAGTATGCAGCTTGCTGATAAAGGGATAA
Alignments
lowQualScore : 1 666 666666 1 1
lowQualScore : . ... ...... . .
lowQualScore : 3 888 555555 3 2
consensus : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
Reference ( family-835 ) : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
gi|1 : AAGAGCTATCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGCAAA
gi|10 : taacGTTGTCACATGAC-AACAAA---GTTTGCC------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|11 : AGTTGTCAGAAGAC-AACAAA---GCTTGCC------T-AT-GGGATAAAACTCACCAACCATGCAA
gi|12 : TTGTTAGAAGAC-AGCAAA---ACTCGTC------G-ATTGGGATAAAACTCACCACCCATGCAA
gi|13 : GTTGTCAAAAGAC-AACAAA---GCTTGCC------G-AT-GGAATAAAACTTGCCACCCATGCAA
gi|14 : TTTTCAGATGAC-AAGAAA---ACTCGTT------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|15 : TTGTTAAAGGAC-AACAAA---GCTCACC------T-AT-GGAATAAAACTCACCACCTATGCAA
gi|16 : TTGTGAGATGAC-AACAAA---GTTCCCC------T-AT-GGGATAAAACTCACCACCCATGCAA
gi|17 : GTTGTAAGACGAC-AACA-------TAGCC------A-TT-GGGATAAAACTCACCACCCTTGCAAAG
gi|18 : cGAGTTGTCAGATGAC-AACAAC---GCTCATC------T-AT-GGGATAAAACTTTCCATCCATG
gi|19 : TGTCAGATGAC-AACAAA---GCCCGCC------A-AT-GAGATAAAACTCACCACCCATGCAA
gi|2 : GTTGTCAGAAGAC-AACAAA---GCTCGCCTAGTGAGTAT-GGGATAAAACTCACCACCCATGCAA
gi|20 : GAGTTGTCAGAAGACCAACAAA---GCTTGCC------G-AT-ATGATAAAACTCACCACC
gi|21 : TCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGt
gi|22 : aGAGTTGTCAGAAAAC-AACAAA---GCTCACTGTCA--G-AT-GGGATAAAACTCACC
gi|23 : TGTCAAAAG-C-GACAAA---GCTCGCC------T-AT-GGCAT-AAACTCACCACCAATGCAAAg
gi|24 : TTGTCAGAAGAC-AACAAA---GCTCACC------G-AT-GCGATAAATCTCACCACCCATGC
gi|25 : TGTCAGAA----AACAAA---GCTTGCC------G-AT-GGGATAAAACTCACCACCCATGTAA
gi|26 : GAAGAC-AACAAA---GCTGGCT------G-AT-GGAATAAAACTCACCACCCATGCAAA
gi|27 : AGAC-AACAAA---GCTCGCC------T-AT-GGGATAAAACTCACCACCCTTGCAAA
gi|28 : AGAC-AGCAAA---GTTCTCC------T-AT-GGGATAAAACTCACCACCCATGCAAA
gi|29 : C-AACAAA---GCTTGCA------T-AT-GGGATGAAACTCACCA-CCATGCAAAG
gi|3 : AAGAGTTGTCAGAAGAC-AACAAA---ACTCACT------G-AC-AAGGTAAAACTCACTACCCATGCAAA
gi|30 : c-AACAAA---TCTTGCT------A-AT-GGGATAAAACTCACCACCCATGCAGAG
gi|31 : AAGAGTTGTCAGATGAC-AAC-AA---GCTTGCC------G-AT-GGGAT
gi|32 : AAGAGTTGTCAGAAGAC-AACAAA---GCTCACC------G-AT-GCGA
gi|33 : T-GGAATAAAACTCACCACCCATGCAAAG
gi|4 : AAGAGTTGTCAGATGAC-AACAAA---GCTTGCC------G-AT-GGAATAAAACTCACCACCCATGCAAAGa
gi|5 : GAGCTATCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGCAA
gi|7 : AAGAGTTGTCAAAAGAT-AACAAA---GATCGCC------G-AT-GGGATAAAACTCACCACCCATGC
gi|8 : GAGTTGTCAGAAGAC-AACAAA---ACTCACT------G-AC-AAGGTAAAACTCACCACCCATGCAA
gi|9 : GTTGTCAGATGAC-AACAAA---GCTCACC------G-AT-GGGATAAAATTTACCACCAATGCAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AAATACTTTCTAATAAGATGGCCTACACCAGTATGCAGCTTGCTGATAAAGGGATAA
Alignments
lowQualScore : 1 666 666666 1 1
lowQualScore : . ... ...... . .
lowQualScore : 3 888 555555 3 2
consensus : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
Reference ( family-835 ) : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
gi|1 : AAGAGCTATCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGCAAA
gi|10 : taacGTTGTCACATGAC-AACAAA---GTTTGCC------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|11 : AGTTGTCAGAAGAC-AACAAA---GCTTGCC------T-AT-GGGATAAAACTCACCAACCATGCAA
gi|12 : TTGTTAGAAGAC-AGCAAA---ACTCGTC------G-ATTGGGATAAAACTCACCACCCATGCAA
gi|13 : GTTGTCAAAAGAC-AACAAA---GCTTGCC------G-AT-GGAATAAAACTTGCCACCCATGCAA
gi|14 : TTTTCAGATGAC-AAGAAA---ACTCGTT------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|15 : TTGTTAAAGGAC-AACAAA---GCTCACC------T-AT-GGAATAAAACTCACCACCTATGCAA
gi|16 : TTGTGAGATGAC-AACAAA---GTTCCCC------T-AT-GGGATAAAACTCACCACCCATGCAA
gi|17 : GTTGTAAGACGAC-AACA-------TAGCC------A-TT-GGGATAAAACTCACCACCCTTGCAAAG
gi|18 : cGAGTTGTCAGATGAC-AACAAC---GCTCATC------T-AT-GGGATAAAACTTTCCATCCATG
gi|19 : TGTCAGATGAC-AACAAA---GCCCGCC------A-AT-GAGATAAAACTCACCACCCATGCAA
gi|2 : GTTGTCAGAAGAC-AACAAA---GCTCGCCTAGTGAGTAT-GGGATAAAACTCACCACCCATGCAA
gi|20 : GAGTTGTCAGAAGACCAACAAA---GCTTGCC------G-AT-ATGATAAAACTCACCACC
gi|21 : TCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGt
gi|22 : aGAGTTGTCAGAAAAC-AACAAA---GCTCACTGTCA--G-AT-GGGATAAAACTCACC
gi|23 : TGTCAAAAG-C-GACAAA---GCTCGCC------T-AT-GGCAT-AAACTCACCACCAATGCAAAg
gi|24 : TTGTCAGAAGAC-AACAAA---GCTCACC------G-AT-GCGATAAATCTCACCACCCATGC
gi|25 : TGTCAGAA----AACAAA---GCTTGCC------G-AT-GGGATAAAACTCACCACCCATGTAA
gi|26 : GAAGAC-AACAAA---GCTGGCT------G-AT-GGAATAAAACTCACCACCCATGCAAA
gi|27 : AGAC-AACAAA---GCTCGCC------T-AT-GGGATAAAACTCACCACCCTTGCAAA
gi|28 : AGAC-AGCAAA---GTTCTCC------T-AT-GGGATAAAACTCACCACCCATGCAAA
gi|29 : C-AACAAA---GCTTGCA------T-AT-GGGATGAAACTCACCA-CCATGCAAAG
gi|3 : AAGAGTTGTCAGAAGAC-AACAAA---ACTCACT------G-AC-AAGGTAAAACTCACTACCCATGCAAA
gi|30 : c-AACAAA---TCTTGCT------A-AT-GGGATAAAACTCACCACCCATGCAGAG
gi|31 : AAGAGTTGTCAGATGAC-AAC-AA---GCTTGCC------G-AT-GGGAT
gi|32 : AAGAGTTGTCAGAAGAC-AACAAA---GCTCACC------G-AT-GCGA
gi|33 : T-GGAATAAAACTCACCACCCATGCAAAG
gi|4 : AAGAGTTGTCAGATGAC-AACAAA---GCTTGCC------G-AT-GGAATAAAACTCACCACCCATGCAAAGa
gi|5 : GAGCTATCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGCAA
gi|7 : AAGAGTTGTCAAAAGAT-AACAAA---GATCGCC------G-AT-GGGATAAAACTCACCACCCATGC
gi|8 : GAGTTGTCAGAAGAC-AACAAA---ACTCACT------G-AC-AAGGTAAAACTCACCACCCATGCAA
gi|9 : GTTGTCAGATGAC-AACAAA---GCTCACC------G-AT-GGGATAAAATTTACCACCAATGCAAA
blockSeqs : C TTT TAGTGA T T
blockSeqs : . TTT GTCA . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : ***
originalCons : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
finalCons : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AAATACTTTCTAATAAGATGGCCTACACCAGTATGCAGCTTGCTGATAAAGGGATAA
Alignments
lowQualScore : 1 666 666666 1 1
lowQualScore : . ... ...... . .
lowQualScore : 3 888 555555 3 2
consensus : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
Reference ( family-835 ) : AAGAGTTGTCAGAAGAC-AACAAA---GCTCGCC------G-AT-GGGATAAAACTCACCACCCATGCAAAG
gi|1 : AAGAGCTATCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGCAAA
gi|10 : taacGTTGTCACATGAC-AACAAA---GTTTGCC------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|11 : AGTTGTCAGAAGAC-AACAAA---GCTTGCC------T-AT-GGGATAAAACTCACCAACCATGCAA
gi|12 : TTGTTAGAAGAC-AGCAAA---ACTCGTC------G-ATTGGGATAAAACTCACCACCCATGCAA
gi|13 : GTTGTCAAAAGAC-AACAAA---GCTTGCC------G-AT-GGAATAAAACTTGCCACCCATGCAA
gi|14 : TTTTCAGATGAC-AAGAAA---ACTCGTT------G-AT-GGGATAAAACTCACCATCCATGCAAA
gi|15 : TTGTTAAAGGAC-AACAAA---GCTCACC------T-AT-GGAATAAAACTCACCACCTATGCAA
gi|16 : TTGTGAGATGAC-AACAAA---GTTCCCC------T-AT-GGGATAAAACTCACCACCCATGCAA
gi|17 : GTTGTAAGACGAC-AACA-------TAGCC------A-TT-GGGATAAAACTCACCACCCTTGCAAAG
gi|18 : cGAGTTGTCAGATGAC-AACAAC---GCTCATC------T-AT-GGGATAAAACTTTCCATCCATG
gi|19 : TGTCAGATGAC-AACAAA---GCCCGCC------A-AT-GAGATAAAACTCACCACCCATGCAA
gi|2 : GTTGTCAGAAGAC-AACAAA---GCTCGCCTAGTGAGTAT-GGGATAAAACTCACCACCCATGCAA
gi|20 : GAGTTGTCAGAAGACCAACAAA---GCTTGCC------G-AT-ATGATAAAACTCACCACC
gi|21 : TCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGt
gi|22 : aGAGTTGTCAGAAAAC-AACAAA---GCTCACTGTCA--G-AT-GGGATAAAACTCACC
gi|23 : TGTCAAAAG-C-GACAAA---GCTCGCC------T-AT-GGCAT-AAACTCACCACCAATGCAAAg
gi|24 : TTGTCAGAAGAC-AACAAA---GCTCACC------G-AT-GCGATAAATCTCACCACCCATGC
gi|25 : TGTCAGAA----AACAAA---GCTTGCC------G-AT-GGGATAAAACTCACCACCCATGTAA
gi|26 : GAAGAC-AACAAA---GCTGGCT------G-AT-GGAATAAAACTCACCACCCATGCAAA
gi|27 : AGAC-AACAAA---GCTCGCC------T-AT-GGGATAAAACTCACCACCCTTGCAAA
gi|28 : AGAC-AGCAAA---GTTCTCC------T-AT-GGGATAAAACTCACCACCCATGCAAA
gi|29 : C-AACAAA---GCTTGCA------T-AT-GGGATGAAACTCACCA-CCATGCAAAG
gi|3 : AAGAGTTGTCAGAAGAC-AACAAA---ACTCACT------G-AC-AAGGTAAAACTCACTACCCATGCAAA
gi|30 : c-AACAAA---TCTTGCT------A-AT-GGGATAAAACTCACCACCCATGCAGAG
gi|31 : AAGAGTTGTCAGATGAC-AAC-AA---GCTTGCC------G-AT-GGGAT
gi|32 : AAGAGTTGTCAGAAGAC-AACAAA---GCTCACC------G-AT-GCGA
gi|33 : T-GGAATAAAACTCACCACCCATGCAAAG
gi|4 : AAGAGTTGTCAGATGAC-AACAAA---GCTTGCC------G-AT-GGAATAAAACTCACCACCCATGCAAAGa
gi|5 : GAGCTATCAGAAGAC-AACAATTTTGCTCGCT------G-AT-GGGATAAAACTCACCACCCATGCAA
gi|7 : AAGAGTTGTCAAAAGAT-AACAAA---GATCGCC------G-AT-GGGATAAAACTCACCACCCATGC
gi|8 : GAGTTGTCAGAAGAC-AACAAA---ACTCACT------G-AC-AAGGTAAAACTCACCACCCATGCAA
gi|9 : GTTGTCAGATGAC-AACAAA---GCTCACC------G-AT-GGGATAAAATTTACCACCAATGCAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AAATACTTTCTAATAAGATGGCCTACACCAGTATGCAGCTTGCTGATAAAGGGATAA